Query psy17453
Match_columns 140
No_of_seqs 102 out of 357
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 22:52:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17453.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17453hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3ea1 c.47.1.12 (A:1-114) Re 47.5 2.7 0.0002 26.4 0.8 32 1-32 1-32 (114)
2 d1egoa_ c.47.1.1 (A:) Glutared 33.2 13 0.00096 21.4 2.4 25 2-26 3-27 (85)
3 d2axti1 f.23.37.1 (I:1-35) Pho 29.9 32 0.0023 17.1 3.4 12 107-118 23-34 (35)
4 d1nm3a1 c.47.1.1 (A:166-239) C 29.0 11 0.00083 21.1 1.5 28 2-29 7-34 (74)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 28.9 29 0.0021 16.3 3.0 18 80-97 5-22 (30)
6 d1r7ha_ c.47.1.1 (A:) Glutared 27.5 14 0.001 20.6 1.7 30 2-31 3-32 (74)
7 d1rw1a_ c.47.1.12 (A:) Hypothe 24.9 9.3 0.00067 23.6 0.6 31 2-32 2-32 (114)
8 d1j9ba_ c.47.1.12 (A:) Arsenat 24.4 11 0.00083 24.2 1.0 31 2-32 2-32 (138)
9 d1qasa1 a.39.1.7 (A:205-298) P 23.6 33 0.0024 20.1 3.1 31 101-138 10-40 (94)
10 d1h75a_ c.47.1.1 (A:) Glutared 22.5 12 0.0009 21.1 0.8 30 2-31 3-32 (76)
No 1
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=47.45 E-value=2.7 Score=26.45 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=28.0
Q ss_pred CeeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 1 MCAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 1 ~iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
|+-+||.+=|.++|+|...+..|...+..++-
T Consensus 1 Mi~ly~~~~C~~~rka~~~L~~~~i~~~~~d~ 32 (114)
T d1z3ea1 1 MVTLYTSPSCTSCRKARAWLEEHEIPFVERNI 32 (114)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCEEEEET
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCCeEEEee
Confidence 67899999999999999999999988766553
No 2
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=33.25 E-value=13 Score=21.44 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=19.8
Q ss_pred eeecCCchhHHHHHHHHHHHHchhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVR 26 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~ 26 (140)
+-|++++.|+-+++|-.|+.++...
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~ 27 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNE 27 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCC
Confidence 5688888888888888888876644
No 3
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=29.94 E-value=32 Score=17.06 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=7.9
Q ss_pred HhhhhhhhhcCC
Q psy17453 107 CFLEDCERNDGS 118 (140)
Q Consensus 107 Cf~~D~e~n~g~ 118 (140)
-...|+.||.|+
T Consensus 23 FLSnDP~RnP~r 34 (35)
T d2axti1 23 FLSGDPARNPKR 34 (35)
T ss_dssp HHTTCTTCSSCC
T ss_pred hccCCCCCCCCC
Confidence 345688888764
No 4
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=28.96 E-value=11 Score=21.08 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=21.1
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVV 29 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~ 29 (140)
|-|++++.|.-+++|-.|+.++......
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~~i~~~~ 34 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDKGLSFEE 34 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCeEE
Confidence 5678888888888888888888766543
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=28.88 E-value=29 Score=16.32 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhHHHH
Q psy17453 80 AILGVATFLISSTFFRVY 97 (140)
Q Consensus 80 ~i~~~~s~~ia~~F~~v~ 97 (140)
..+++++-+|+..|+.+|
T Consensus 5 ~yv~ifac~i~lfffaif 22 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHH
Confidence 345666667776666554
No 6
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=27.48 E-value=14 Score=20.56 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=23.9
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
|-||+++.|.-+++|-.++.++......++
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~~i~~~~~~ 32 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRAGLAYNTVD 32 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEeCCCChhHHHHHHHHHHcCCceEEEE
Confidence 568899999988888899999887765443
No 7
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.94 E-value=9.3 Score=23.63 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=26.8
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
+-|||.+=|.++|+|...+..|...+-.++-
T Consensus 2 ~~iY~~p~Cs~srka~~~L~~~~i~~~~idy 32 (114)
T d1rw1a_ 2 YVLYGIKACDTMKKARTWLDEHKVAYDFHDY 32 (114)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCeEEEEc
Confidence 4589999999999999999999988776554
No 8
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=24.45 E-value=11 Score=24.21 Aligned_cols=31 Identities=6% Similarity=0.252 Sum_probs=26.9
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVDK 32 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~~ 32 (140)
|-+||.+=|..+|+|..++..|...+-.++-
T Consensus 2 i~iY~~p~Cs~srkal~~L~~~~i~~~~idy 32 (138)
T d1j9ba_ 2 ITIYHNPACGTSRNTLEMIRNSGTEPTIILY 32 (138)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCCEEECT
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCCeEEEee
Confidence 4689999999999999999999988776663
No 9
>d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.63 E-value=33 Score=20.08 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhhhhhcCCCcccccHHHHHHHhhhcccC
Q psy17453 101 IDTLFLCFLEDCERNDGSQEYFMSKRLMKLLTKRKVVD 138 (140)
Q Consensus 101 idTiflCf~~D~e~n~g~~~~~~~~~L~~~l~~~~~~~ 138 (140)
|+.||.-|+.|. +.-.+++|.+||.+.++.+
T Consensus 10 i~~if~~ys~~~-------~~mt~~~f~~FL~~eQ~~~ 40 (94)
T d1qasa1 10 IDRAFEEAAGSA-------ETLSVERLVTFLQHQQREE 40 (94)
T ss_dssp HHHHHHHHHTTS-------SSCBHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHhCCC-------CccCHHHHHHHHHHHcCCc
Confidence 456676676431 1245689999998877654
No 10
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=22.52 E-value=12 Score=21.08 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=24.0
Q ss_pred eeecCCchhHHHHHHHHHHHHchhhhHhhh
Q psy17453 2 CAIHGGNFCKSAKDAFSLLIRNAVRTVVVD 31 (140)
Q Consensus 2 iAi~G~~Fc~sAk~a~~Li~~N~~~~~~v~ 31 (140)
|-||+++-|.-+++|-.++.++......++
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~~~i~y~~~~ 32 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMENRGFDFEMIN 32 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHhcCceeEEEe
Confidence 568888888888888888888887765544
Done!