RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17453
(140 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.003
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 42/144 (29%)
Query: 7 GNFCKSAKDAFSLLIRNAVRTVVV-DKVADLLLFLGK--------VLLTAGVS------- 50
G+ K + + S LIR + V + ++L +L LL+ +S
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 51 -AGAYYIFFRPVIDFDTKKSF-ILEYPWFPVAILGVATFLISST----------FFRVYS 98
Y + + ++ F + L+ G + L+++ FF
Sbjct: 245 QLAHYVVTAK-LLGFTPGELRSYLK------GATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 99 MAIDTLFLCFLEDCERNDGSQEYF 122
AI LF + E +
Sbjct: 298 KAITVLFFIGVR-------CYEAY 314
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 31.0 bits (71), Expect = 0.11
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 36 LLLFLGKVLLTAGVSAGAYYIFFRPVID--FDTKKSFILEYPWFPVAILGVATFLISSTF 93
++ + +L A + + +P++D F +L W P+ ++G+ +++
Sbjct: 28 IVAGIALILNAASDTFMLSLL--KPLLDDGFGKTDRSVLL--WMPLVVIGLMILRGITSY 83
Query: 94 FRVYSMA 100
Y ++
Sbjct: 84 ISSYCIS 90
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 29.1 bits (66), Expect = 0.48
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 36 LLLFLGKV-LLTAGVSAGAYYIFFRPVIDF---DTKKSFILEYPWFPVAILGVATFLISS 91
L L + V + + F +ID + + + + V ++
Sbjct: 19 RRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAA 78
Query: 92 TFFRVYSMAI 101
RVY M
Sbjct: 79 NAIRVYLMQT 88
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 28.3 bits (64), Expect = 0.93
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 36 LLLFLGKVLLTAGVSAGAYYIFFRPVID--FDTKKSFILEYPWFPVAILGVATFLISSTF 93
++ + V+ A + + +P++D F +S L P ILG+ S F
Sbjct: 28 VVSTIALVINAAADTYMISLL--KPLLDEGFGNAESNFLR--ILPFMILGLMFVRGLSGF 83
Query: 94 FRVYSMA 100
Y ++
Sbjct: 84 ASSYCLS 90
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 28.0 bits (63), Expect = 1.1
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 23 NAVRTVVVDK-VADLLLFLGKVLLTAGV 49
NA+ T++++ + L + L GV
Sbjct: 271 NAMETLLINPKFSKWWEVLENLTLEGGV 298
>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation,
oxidoreductase; HET: MTV; 2.60A {Pichia angusta}
Length = 474
Score = 26.8 bits (59), Expect = 3.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 40 LGKVLLTAGVSAGAYYIFFR 59
LG V+ A S A +++
Sbjct: 163 LGDVIGKARPSKRARFVWME 182
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 26.5 bits (59), Expect = 3.8
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 14 KDAFSLLIRNAVRTVVVDKVADLLLFLGKVLLTAGVSAGAYYIFFRPVIDFDTKKSFILE 73
+D L+ +RT + ++A LL+ GA FD F+ E
Sbjct: 559 RDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGA---------TFDVSMRFLTE 609
Query: 74 YPW 76
PW
Sbjct: 610 DPW 612
>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum,
nitrate assimilation, oxidoreductase; HET: MTV; 1.70A
{Pichia angusta}
Length = 424
Score = 26.3 bits (58), Expect = 4.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 40 LGKVLLTAGVSAGAYYIFFR 59
LG V+ A S A +++
Sbjct: 113 LGDVIGKARPSKRARFVWME 132
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for
structural genomics of infec diseases, csgid,
transferase; HET: MSE; 1.89A {Yersinia pestis} PDB:
1td2_A* 1vi9_A*
Length = 289
Score = 25.4 bits (56), Expect = 6.8
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 12 SAKDAFSLLIRNAVRTVVVDKVADLLLFLGKVLLTAGVSAGAYYIFFRPVIDFDTK 67
A L + V+V K + V+A + RP++DF +
Sbjct: 165 QAVQVARSLCARGPKVVLV-KHLSRAGYHADCFEMLLVTADDAWHICRPLVDFGKR 219
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 25.3 bits (56), Expect = 8.1
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 43 VLLTAGVSAGAYYIFFRPVID---FD-TKKSFILEY 74
+L A G Y+I P FD S IL Y
Sbjct: 249 FVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRY 284
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 25.0 bits (55), Expect = 9.7
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 34 ADLLLFLGKVLLTAGVSAGAYYIFFRPVIDFDTKKSFILEYPW 76
L K+ L + +Y+ F PVID FI + P
Sbjct: 263 PRALTLAYKLPLGSTEYPKLHYLSFVPVID----GDFIPDDPV 301
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.144 0.434
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,139,210
Number of extensions: 121165
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 21
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (23.8 bits)