Query psy17455
Match_columns 149
No_of_seqs 176 out of 1088
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 22:54:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 4.4E-25 9.6E-30 187.8 8.8 127 7-140 2-133 (557)
2 KOG4441|consensus 99.9 6.8E-25 1.5E-29 187.0 6.3 132 6-142 12-146 (571)
3 PHA02790 Kelch-like protein; P 99.9 1.5E-23 3.2E-28 175.8 6.1 123 18-146 10-136 (480)
4 PHA03098 kelch-like protein; P 99.8 1.2E-21 2.7E-26 165.4 5.8 113 27-146 6-121 (534)
5 PF00651 BTB: BTB/POZ domain; 99.8 4.4E-21 9.6E-26 130.2 3.8 103 21-128 1-109 (111)
6 smart00225 BTB Broad-Complex, 99.7 4.5E-18 9.7E-23 109.7 6.3 87 32-123 1-90 (90)
7 KOG4350|consensus 99.7 6.8E-18 1.5E-22 136.4 2.6 125 14-143 28-158 (620)
8 KOG4591|consensus 99.6 2.7E-16 5.9E-21 116.9 3.1 124 14-143 50-179 (280)
9 KOG2075|consensus 99.6 4.2E-15 9.2E-20 122.0 6.3 123 14-141 98-228 (521)
10 KOG4682|consensus 99.2 6.4E-11 1.4E-15 96.0 7.3 112 21-138 60-178 (488)
11 KOG0783|consensus 98.9 3.2E-10 6.8E-15 98.7 0.9 107 31-142 713-827 (1267)
12 KOG0783|consensus 98.7 5.6E-08 1.2E-12 85.1 6.8 106 14-124 538-683 (1267)
13 KOG2838|consensus 98.1 2.2E-06 4.9E-11 67.1 3.5 98 14-116 114-219 (401)
14 KOG2838|consensus 97.9 3.4E-06 7.4E-11 66.1 1.1 114 16-134 221-392 (401)
15 KOG2716|consensus 97.9 4.1E-05 8.8E-10 58.8 6.1 89 35-128 10-103 (230)
16 PF02214 BTB_2: BTB/POZ domain 97.8 3E-05 6.6E-10 51.1 3.6 84 33-122 1-94 (94)
17 smart00512 Skp1 Found in Skp1 97.4 0.0002 4.4E-09 48.3 3.7 75 35-115 8-104 (104)
18 KOG3473|consensus 97.2 0.0019 4.1E-08 43.1 6.8 75 35-115 23-112 (112)
19 KOG0511|consensus 97.2 8.3E-05 1.8E-09 60.7 -0.3 88 31-123 150-239 (516)
20 PF11822 DUF3342: Domain of un 96.8 0.00015 3.3E-09 58.0 -1.7 86 39-129 14-103 (317)
21 KOG0511|consensus 96.6 0.00031 6.7E-09 57.4 -1.1 84 39-128 301-393 (516)
22 KOG1724|consensus 96.4 0.0021 4.6E-08 46.9 2.4 88 35-128 11-125 (162)
23 PF03931 Skp1_POZ: Skp1 family 96.4 0.0037 8E-08 38.2 3.0 52 35-92 7-58 (62)
24 KOG1987|consensus 96.3 0.0024 5.3E-08 50.3 2.1 87 37-128 108-199 (297)
25 KOG2714|consensus 95.8 0.031 6.8E-07 46.5 6.3 86 30-120 9-102 (465)
26 KOG1665|consensus 95.1 0.069 1.5E-06 41.2 5.9 88 35-125 14-106 (302)
27 COG5201 SKP1 SCF ubiquitin lig 94.5 0.041 8.9E-07 38.7 2.9 90 35-130 8-122 (158)
28 KOG2715|consensus 90.8 0.52 1.1E-05 34.8 4.5 86 35-125 26-117 (210)
29 PF01466 Skp1: Skp1 family, di 89.1 0.27 5.8E-06 31.3 1.7 33 98-130 11-43 (78)
30 KOG3840|consensus 85.1 3 6.4E-05 33.8 5.8 80 33-116 98-185 (438)
31 KOG2723|consensus 84.3 6.5 0.00014 30.2 7.2 95 28-127 5-107 (221)
32 PF09593 Pathogen_betaC1: Beta 63.7 30 0.00065 23.9 5.5 59 32-95 15-76 (117)
33 KOG4390|consensus 55.8 15 0.00033 30.9 3.4 92 35-134 45-143 (632)
34 KOG1778|consensus 49.2 3 6.5E-05 33.8 -1.5 86 35-124 32-119 (319)
35 PF06200 tify: tify domain; I 39.9 26 0.00056 19.0 1.7 21 91-111 11-35 (36)
36 PF09116 gp45-slide_C: gp45 sl 33.4 28 0.00061 23.8 1.5 24 96-119 4-27 (112)
37 PHA02790 Kelch-like protein; P 25.5 72 0.0016 27.0 3.0 32 97-128 119-150 (480)
38 PF07632 DUF1593: Protein of u 23.0 51 0.0011 26.0 1.5 26 73-98 2-30 (260)
39 KOG3713|consensus 21.4 1.1E+02 0.0023 26.4 3.2 41 78-118 86-127 (477)
40 PHA03098 kelch-like protein; P 20.5 88 0.0019 26.6 2.5 32 97-128 104-135 (534)
41 PF05225 HTH_psq: helix-turn-h 20.4 1.4E+02 0.0031 16.6 2.6 29 81-117 2-30 (45)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.92 E-value=4.4e-25 Score=187.82 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=117.4
Q ss_pred ceeecccHHHHHHHHHHHHhCCCcceEE-EeC-CeEEEeeeeeecccCCCCChHHHHHhcCC--CCC-CCCeEEeCCCCH
Q psy17455 7 EFCLRANQETMISLVNSLLKKETLVDLR-SAE-GQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HND-ERPILIFSETKF 81 (149)
Q Consensus 7 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~-g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~-~~~~i~l~~~~~ 81 (149)
.+.++.|+..+++.|++||.++.+|||+ .++ |++|+|||+||||+|+| |++||.. .+. ...+|.|.++++
T Consensus 2 ~~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~Y-----F~amF~~~~~e~~~~~~v~l~~v~~ 76 (557)
T PHA02713 2 DIDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKY-----FRTLFTTPMIIRDLVTRVNLQMFDK 76 (557)
T ss_pred CcchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHH-----HHHHhcCCchhhccCceEEeccCCH
Confidence 3567788999999999999999999999 887 89999999999999999 9999985 333 467899999999
Q ss_pred HHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhh
Q psy17455 82 NELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYS 140 (149)
Q Consensus 82 ~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~ 140 (149)
++|+.+|+|+|||+ |+.+++++++.+|++||++.|+++|.+++...+.++||-....
T Consensus 77 ~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~ 133 (557)
T PHA02713 77 DAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYH 133 (557)
T ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHH
Confidence 99999999999997 6899999999999999999999999999999999999988764
No 2
>KOG4441|consensus
Probab=99.91 E-value=6.8e-25 Score=186.98 Aligned_cols=132 Identities=23% Similarity=0.359 Sum_probs=124.4
Q ss_pred cceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHH
Q psy17455 6 QEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFN 82 (149)
Q Consensus 6 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~ 82 (149)
..|..+.|...+++.|+.+|..+.||||+ .+++++|+|||.||||+|+| |++||.. .+....+|.+.+++++
T Consensus 12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~Y-----FraMFt~~l~e~~~~~i~l~~v~~~ 86 (571)
T KOG4441|consen 12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPY-----FRAMFTSGLKESKQKEINLEGVDPE 86 (571)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHH-----HHHHhcCCcccccceEEEEecCCHH
Confidence 46778888999999999999999999999 99999999999999999999 9999984 7888999999999999
Q ss_pred HHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhc
Q psy17455 83 ELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQA 142 (149)
Q Consensus 83 ~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~ 142 (149)
+++.+++|+|||++.|+.+++++|+.+|.+|||+.++++|.+++...+.|+||-.....+
T Consensus 87 ~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a 146 (571)
T KOG4441|consen 87 TLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFA 146 (571)
T ss_pred HHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998654443
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.89 E-value=1.5e-23 Score=175.75 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=108.6
Q ss_pred HHHHHHHHhCCCcceEEEeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEe--CCCCHHHHHHHhhhhcC
Q psy17455 18 ISLVNSLLKKETLVDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIF--SETKFNELKSMIDYMYK 93 (149)
Q Consensus 18 ~~~l~~l~~~~~~~Dv~~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l--~~~~~~~~~~ll~f~Yt 93 (149)
.+.+-.++.++.||||+.+.|++|+|||+||||+|+| |++||.+ .|+. ..|.+ .++++++|+.+|+|+||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~HR~VLAa~S~Y-----FraMF~~~~~Es~-~~v~~~~~~v~~~~l~~lldy~YT 83 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIGGNIIVNSTILKKLSPY-----FRTHLRQKYTKNK-DPVTRVCLDLDIHSLTSIVIYSYT 83 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcCcEEeeehhhhhhcCHH-----HHHHhcCCccccc-cceEEEecCcCHHHHHHHHHhhee
Confidence 3556678999999999955677999999999999999 9999975 4443 34554 48999999999999999
Q ss_pred CcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCC
Q psy17455 94 GEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQ 146 (149)
Q Consensus 94 g~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (149)
|++.|+.+|+++++.||++||++.++++|.+++...+.|+||-.....|...+
T Consensus 84 g~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~ 136 (480)
T PHA02790 84 GKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYG 136 (480)
T ss_pred eeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999888776544
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.84 E-value=1.2e-21 Score=165.37 Aligned_cols=113 Identities=18% Similarity=0.269 Sum_probs=104.4
Q ss_pred CCCcceEE-Ee--CCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhH
Q psy17455 27 KETLVDLR-SA--EGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDEL 103 (149)
Q Consensus 27 ~~~~~Dv~-~~--~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~ 103 (149)
++.||||+ .+ +|++|+|||.||+++|+| |++||.+... ...|.+.+ ++++|+.+|+|+|||++.++.+++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~y-----F~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEY-----FKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHH-----HHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHHH
Confidence 88999999 76 999999999999999999 9999986444 67899999 999999999999999999999999
Q ss_pred HHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCC
Q psy17455 104 NHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQ 146 (149)
Q Consensus 104 ~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (149)
.+++.+|++|+++.|+++|++.+...+.+++|.+....|...+
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~ 121 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYG 121 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998877665544
No 5
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.82 E-value=4.4e-21 Score=130.22 Aligned_cols=103 Identities=24% Similarity=0.471 Sum_probs=90.4
Q ss_pred HHHHHhCCCcceEE-EeC-CeEEEeeeeeecccCCCCChHHHHHhcCCC-CCCC--CeEEeCCCCHHHHHHHhhhhcCCc
Q psy17455 21 VNSLLKKETLVDLR-SAE-GQYLKAHKVVLCTCSPVFEIPLFEMLLSQH-NDER--PILIFSETKFNELKSMIDYMYKGE 95 (149)
Q Consensus 21 l~~l~~~~~~~Dv~-~~~-g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~-~~~~--~~i~l~~~~~~~~~~ll~f~Ytg~ 95 (149)
|+++++++.++|++ .++ |+.|+|||.||+++|+| |+.+|... .... .+|.++++++++|+.+++|+|+|+
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~-----F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~ 75 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPY-----FRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGE 75 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHH-----HHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSE
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchh-----hhhcccccccccccccccccccccccccccccccccCCc
Confidence 57899999999999 999 89999999999999999 99999875 2333 468889999999999999999999
Q ss_pred ccCC-hhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455 96 VNIA-PDELNHFLKAAERLQIRGLSESESTTQTA 128 (149)
Q Consensus 96 ~~i~-~~~~~~ll~~A~~l~i~~L~~~~~~~~~~ 128 (149)
+.++ .+++.+++.+|++|+++.|++.|...+.+
T Consensus 76 ~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 76 IEINSDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp EEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 9998 99999999999999999999999876543
No 6
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.74 E-value=4.5e-18 Score=109.75 Aligned_cols=87 Identities=28% Similarity=0.598 Sum_probs=80.5
Q ss_pred eEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCC--CCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHHHHHH
Q psy17455 32 DLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHND--ERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLK 108 (149)
Q Consensus 32 Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~--~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~ 108 (149)
|++ .++|+.|++||.+|+++|+| |+.+|..... ....+.++++++++|+.+++|+|+|++.++..++..++.
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~-----f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~ 75 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPY-----FKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLE 75 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHH-----HHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHH
Confidence 678 89999999999999999999 9999986443 678899999999999999999999999999999999999
Q ss_pred HHhhcCccchhhhhh
Q psy17455 109 AAERLQIRGLSESES 123 (149)
Q Consensus 109 ~A~~l~i~~L~~~~~ 123 (149)
+|++|+++.|.+.|+
T Consensus 76 ~a~~~~~~~l~~~c~ 90 (90)
T smart00225 76 LADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHCcHHHHhhhC
Confidence 999999999999874
No 7
>KOG4350|consensus
Probab=99.69 E-value=6.8e-18 Score=136.43 Aligned_cols=125 Identities=21% Similarity=0.339 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcC--CCCCCCCeEEeCCCCHHHHHHHhhh
Q psy17455 14 QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLS--QHNDERPILIFSETKFNELKSMIDY 90 (149)
Q Consensus 14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~--~~~~~~~~i~l~~~~~~~~~~ll~f 90 (149)
...+.+.+.+++.+.+++||+ +++.++|+|||+|||++|.| |++++- ..+..+..|.+.+...++|+.+|+|
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~y-----FRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrY 102 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSY-----FRALLYGGMQESHQQLIPLQETNSEAFRALLRY 102 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHH-----HHHHHhhhhhhhhhcccccccccHHHHHHHHHH
Confidence 445678889999999999999 99999999999999999999 777763 3677788999999999999999999
Q ss_pred hcCCcccCC---hhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhcc
Q psy17455 91 MYKGEVNIA---PDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAG 143 (149)
Q Consensus 91 ~Ytg~~~i~---~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (149)
+|||++.+. .+-+.+++.+|.+|++..|..+.++...+.+.-++....+-.|.
T Consensus 103 iYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ 158 (620)
T KOG4350|consen 103 IYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAY 158 (620)
T ss_pred HhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHH
Confidence 999998764 56678999999999999999999999888888777666554443
No 8
>KOG4591|consensus
Probab=99.61 E-value=2.7e-16 Score=116.95 Aligned_cols=124 Identities=23% Similarity=0.372 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhCCCcceEE-EeCC---eEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhh
Q psy17455 14 QETMISLVNSLLKKETLVDLR-SAEG---QYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMID 89 (149)
Q Consensus 14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g---~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~ 89 (149)
.+.++.....+++.+.|+|++ .++| +.++|||.||||||++ ++-- ........+..+++..+++|...++
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~-----Wkfa-N~~dekse~~~~dDad~Ea~~t~iR 123 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDF-----WKFA-NGGDEKSEELDLDDADFEAFHTAIR 123 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcch-----hhhc-cCCCcchhhhcccccCHHHHHHhhe
Confidence 778888889999999999999 8875 6799999999999997 6522 2333445677888999999999999
Q ss_pred hhcCCcccCChhh--HHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhcc
Q psy17455 90 YMYKGEVNIAPDE--LNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAG 143 (149)
Q Consensus 90 f~Ytg~~~i~~~~--~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (149)
|+||+++....+. +.+++++|.+|+++-|++.|+..+.+.+..+||...+..+.
T Consensus 124 WIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AE 179 (280)
T KOG4591|consen 124 WIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAE 179 (280)
T ss_pred eeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHH
Confidence 9999999886654 68899999999999999999999999999999988776554
No 9
>KOG2075|consensus
Probab=99.56 E-value=4.2e-15 Score=121.96 Aligned_cols=123 Identities=23% Similarity=0.292 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhCCCcceEE-EeCC-----eEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHHH
Q psy17455 14 QETMISLVNSLLKKETLVDLR-SAEG-----QYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNELK 85 (149)
Q Consensus 14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g-----~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~~ 85 (149)
..++..+...++++...+|+. ++++ +.|+|||.|||..|.+ |.+||.+ .+....+|.++++.+.+|.
T Consensus 98 ~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~V-----FdaMf~g~~a~~~s~ei~lpdvepaaFl 172 (521)
T KOG2075|consen 98 KETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDV-----FDAMFYGGLAEDASLEIRLPDVEPAAFL 172 (521)
T ss_pred hhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHH-----HHHHhccCcccccCceeecCCcChhHhH
Confidence 667888889999999999999 8873 5799999999999999 9999976 3445789999999999999
Q ss_pred HHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhh
Q psy17455 86 SMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQ 141 (149)
Q Consensus 86 ~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~ 141 (149)
.+|+|+|++.+.+..+++..++.+|++|-++.|.+.|...+...+.+++.....+|
T Consensus 173 ~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q 228 (521)
T KOG2075|consen 173 AFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQ 228 (521)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988776665
No 10
>KOG4682|consensus
Probab=99.18 E-value=6.4e-11 Score=95.97 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=99.6
Q ss_pred HHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeC----CCCHHHHHHHhhhhcC
Q psy17455 21 VNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFS----ETKFNELKSMIDYMYK 93 (149)
Q Consensus 21 l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~----~~~~~~~~~ll~f~Yt 93 (149)
.+.|+.+|.-+||. .+-|++++.||.-|.- |+| |++||.+ .++....|.+. .|+..+|..++.-+|.
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~y-----f~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~ 133 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEY-----FKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYR 133 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeeec-cHH-----HHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhh
Confidence 46678899999999 9999999999999975 899 9999987 45566655553 7999999999999999
Q ss_pred CcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhh
Q psy17455 94 GEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEED 138 (149)
Q Consensus 94 g~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~ 138 (149)
++++|..+.+..++.+|.++++++|.+.|.+...+.++|.....-
T Consensus 134 dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~y 178 (488)
T KOG4682|consen 134 DEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGY 178 (488)
T ss_pred hheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHh
Confidence 999999999999999999999999999999999999999876543
No 11
>KOG0783|consensus
Probab=98.90 E-value=3.2e-10 Score=98.72 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=83.2
Q ss_pred ceEEEeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCC--CCHHHHHHHhhhhcC-CcccC-----Chhh
Q psy17455 31 VDLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSE--TKFNELKSMIDYMYK-GEVNI-----APDE 102 (149)
Q Consensus 31 ~Dv~~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~--~~~~~~~~ll~f~Yt-g~~~i-----~~~~ 102 (149)
|||+.-+|+.++|||++|+||++| |..||..-+.....|.+.+ +..+.++.+|+|+|+ ++..+ ..+-
T Consensus 713 ~~i~~KDGkvl~aHkc~L~aRlEY-----F~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 713 TVIKLKDGKVLKAHKCFLSARLEY-----FSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred EEEEecCCcCcccceeEeeeHHHH-----HHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 444444899999999999999999 9999975333333355554 459999999999994 55443 2344
Q ss_pred HHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhc
Q psy17455 103 LNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQA 142 (149)
Q Consensus 103 ~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~ 142 (149)
+..++..|+.|-|.+|+++|+..+...++-.++.++.--+
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefa 827 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFA 827 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHH
Confidence 7889999999999999999999999988888887765443
No 12
>KOG0783|consensus
Probab=98.66 E-value=5.6e-08 Score=85.05 Aligned_cols=106 Identities=17% Similarity=0.301 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhCC----CcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC--------------CCCCCeE
Q psy17455 14 QETMISLVNSLLKKE----TLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--------------NDERPIL 74 (149)
Q Consensus 14 ~~~l~~~l~~l~~~~----~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~--------------~~~~~~i 74 (149)
.+++...+..++... .+.||+ .||++.|+|||.|||++|++ |+.+|... ......|
T Consensus 538 ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~f-----lrkL~l~~~~~s~~~dIY~~~~~~~~~~~ 612 (1267)
T KOG0783|consen 538 SSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSF-----LRKLLLQKKKSSVSNDIYIEEITQSHSTI 612 (1267)
T ss_pred cccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHH-----HHHHHHhhccccccceeeeecccccCcee
Confidence 444667777776654 467899 99999999999999999999 99988531 1233466
Q ss_pred EeCCCCHHHHHHHhhhhcCCcccCC--------------hhhHHH-------HHHHHhhcCccchhhhhhh
Q psy17455 75 IFSETKFNELKSMIDYMYKGEVNIA--------------PDELNH-------FLKAAERLQIRGLSESEST 124 (149)
Q Consensus 75 ~l~~~~~~~~~~ll~f~Ytg~~~i~--------------~~~~~~-------ll~~A~~l~i~~L~~~~~~ 124 (149)
.+++++|..|+.+|.|+||+..--+ ++|..+ +...+.++++-.|......
T Consensus 613 ~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 613 RVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred eeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 6889999999999999999854221 233344 6667777777777655443
No 13
>KOG2838|consensus
Probab=98.12 E-value=2.2e-06 Score=67.08 Aligned_cols=98 Identities=12% Similarity=0.240 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCC----eEEeCCCCHHHHHHHh
Q psy17455 14 QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERP----ILIFSETKFNELKSMI 88 (149)
Q Consensus 14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~----~i~l~~~~~~~~~~ll 88 (149)
..++++.+...++.....|+- .....-|+|||++|+++|++ |+.+....+.... .|.+-+++.+.|+.+|
T Consensus 114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpf-----fK~l~nsd~e~~ae~i~dik~ag~dm~~feafL 188 (401)
T KOG2838|consen 114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPF-----FKILANSDEEPEAEDICDIKFAGFDMDAFEAFL 188 (401)
T ss_pred hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcc-----hhhhccCCCCcchhhhhhhhhhccChHHHHHHH
Confidence 566777777777777777877 77777899999999999999 9988776544333 4455589999999999
Q ss_pred hhhcCCcccCC---hhhHHHHHHHHhhcCcc
Q psy17455 89 DYMYKGEVNIA---PDELNHFLKAAERLQIR 116 (149)
Q Consensus 89 ~f~Ytg~~~i~---~~~~~~ll~~A~~l~i~ 116 (149)
.++|||+.... ..|+.-|.++..-|+..
T Consensus 189 h~l~tgEfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 189 HSLITGEFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HHHHhcccchhhcCCchHHHHHHHHHhhCCc
Confidence 99999987543 34455566677666643
No 14
>KOG2838|consensus
Probab=97.92 E-value=3.4e-06 Score=66.08 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhCCCcce-EE--EeCCe--------------EEEeeeeeecccCCCCChHHHHHhcC-----CCC-----
Q psy17455 16 TMISLVNSLLKKETLVD-LR--SAEGQ--------------YLKAHKVVLCTCSPVFEIPLFEMLLS-----QHN----- 68 (149)
Q Consensus 16 ~l~~~l~~l~~~~~~~D-v~--~~~g~--------------~~~aHk~vLaa~S~~~~~~~f~~~f~-----~~~----- 68 (149)
.+-..++.++..-..-| +. .++|+ +++||++|.+++|++ |+.++. +.+
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~f-----fRnLL~RkiregeE~sdrt 295 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKF-----FRNLLLRKIREGEEGSDRT 295 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHH-----HHHHHHHHhhccccccccc
Confidence 34444555555544434 33 45553 589999999999999 766652 222
Q ss_pred -CCCCeEEeCC-CCHHH-HHHHhhhhcCCcccCC----------------------------hhhHHHHHHHHhhcCccc
Q psy17455 69 -DERPILIFSE-TKFNE-LKSMIDYMYKGEVNIA----------------------------PDELNHFLKAAERLQIRG 117 (149)
Q Consensus 69 -~~~~~i~l~~-~~~~~-~~~ll~f~Ytg~~~i~----------------------------~~~~~~ll~~A~~l~i~~ 117 (149)
..+..|.+.+ |=|.. -..++.++||+.+.++ ...+.+|+..|-+|++.-
T Consensus 296 lr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfem 375 (401)
T KOG2838|consen 296 LRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEM 375 (401)
T ss_pred ccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 2345677764 33444 4567899999876432 123567889999999999
Q ss_pred hhhhhhhccccCCCCCc
Q psy17455 118 LSESESTTQTAVHYPDD 134 (149)
Q Consensus 118 L~~~~~~~~~~~~~~~~ 134 (149)
|..+|+..+...+..+.
T Consensus 376 LaQa~e~Vir~acaadl 392 (401)
T KOG2838|consen 376 LAQACEDVIRKACAADL 392 (401)
T ss_pred HHHHHHHHHHhhhhhhc
Confidence 99999988777665544
No 15
>KOG2716|consensus
Probab=97.86 E-value=4.1e-05 Score=58.79 Aligned_cols=89 Identities=21% Similarity=0.399 Sum_probs=73.4
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC---CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCCh--hhHHHHHHH
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH---NDERPILIFSETKFNELKSMIDYMYKGEVNIAP--DELNHFLKA 109 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~---~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~--~~~~~ll~~ 109 (149)
-|||+.|...+.-|.-...+ |+.|+... +.....-.+=+-+|.-|..+|+||=.|.+.++. .++.+|+.=
T Consensus 10 nvGG~~F~Tsk~TLtk~dg~-----fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~E 84 (230)
T KOG2716|consen 10 NVGGTIFKTSKSTLTKFDGF-----FKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLRE 84 (230)
T ss_pred ecCCeEEEeehhhhhhhhhH-----HHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence 68999999999999999999 99999763 222222334468999999999999998888755 567899999
Q ss_pred HhhcCccchhhhhhhcccc
Q psy17455 110 AERLQIRGLSESESTTQTA 128 (149)
Q Consensus 110 A~~l~i~~L~~~~~~~~~~ 128 (149)
|.+|.+.+|++.|...+..
T Consensus 85 A~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 85 AEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHhhHHHHHHHHHHHhhh
Confidence 9999999999999985444
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.77 E-value=3e-05 Score=51.14 Aligned_cols=84 Identities=18% Similarity=0.295 Sum_probs=61.1
Q ss_pred EE-EeCCeEEEeeeeeec-ccCCCCChHHHHHhcCCC-----CCCCCeEEeCCCCHHHHHHHhhhhcC-CcccCC-hhhH
Q psy17455 33 LR-SAEGQYLKAHKVVLC-TCSPVFEIPLFEMLLSQH-----NDERPILIFSETKFNELKSMIDYMYK-GEVNIA-PDEL 103 (149)
Q Consensus 33 v~-~~~g~~~~aHk~vLa-a~S~~~~~~~f~~~f~~~-----~~~~~~i~l~~~~~~~~~~ll~f~Yt-g~~~i~-~~~~ 103 (149)
|. -|||+.|.+-+..|. ....+ |..++... ......+-+ +-+|..|+.||+|+-+ +.+..+ ...+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~-----l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~ 74 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSL-----LARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICL 74 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTST-----TTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-H
T ss_pred CEEEECCEEEEEcHHHHhhCCCCh-----hhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhH
Confidence 45 799999999999998 44567 66666532 234556655 5799999999999999 677664 4567
Q ss_pred HHHHHHHhhcCccch-hhhh
Q psy17455 104 NHFLKAAERLQIRGL-SESE 122 (149)
Q Consensus 104 ~~ll~~A~~l~i~~L-~~~~ 122 (149)
..++.-|++|+++.| .+.|
T Consensus 75 ~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 75 EELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHHHHT-HHHHBHHC
T ss_pred HHHHHHHHHcCCCccccCCC
Confidence 889999999999998 7766
No 17
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.40 E-value=0.0002 Score=48.28 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=57.3
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC---CCCCCeEEeCCCCHHHHHHHhhhhcCCcc---------------
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH---NDERPILIFSETKFNELKSMIDYMYKGEV--------------- 96 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~---~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~--------------- 96 (149)
..+|..|.+.+.+. ..|.. ++.++... ......|.+++++...++.+++|++.-.-
T Consensus 8 S~Dg~~f~v~~~~a-~~S~~-----i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD 81 (104)
T smart00512 8 SSDGEVFEVEREVA-RQSKT-----IKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWD 81 (104)
T ss_pred eCCCCEEEecHHHH-HHHHH-----HHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHH
Confidence 66899999998866 56888 88887542 12225899999999999999999964211
Q ss_pred ----cCChhhHHHHHHHHhhcCc
Q psy17455 97 ----NIAPDELNHFLKAAERLQI 115 (149)
Q Consensus 97 ----~i~~~~~~~ll~~A~~l~i 115 (149)
.++.+.+.+|+.||++|+|
T Consensus 82 ~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 82 AEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 1555678999999999986
No 18
>KOG3473|consensus
Probab=97.24 E-value=0.0019 Score=43.13 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=59.0
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCC----CCCCCCeEEeCCCCHHHHHHHhhhh-----cCCc------ccCC
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ----HNDERPILIFSETKFNELKSMIDYM-----YKGE------VNIA 99 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~ll~f~-----Ytg~------~~i~ 99 (149)
..+|.+|-.-|- +|.-|+- .++||.+ .+....+|.+++++..+++.+.+|+ |++. ..|+
T Consensus 23 S~Ddhefiikre-~AmtSgT-----iraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ip 96 (112)
T KOG3473|consen 23 SSDDHEFIIKRE-HAMTSGT-----IRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIP 96 (112)
T ss_pred cCCCcEEEEeeh-hhhhhhH-----HHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCC
Confidence 346666665554 4566888 9999974 4567789999999999999999998 5554 4678
Q ss_pred hhhHHHHHHHHhhcCc
Q psy17455 100 PDELNHFLKAAERLQI 115 (149)
Q Consensus 100 ~~~~~~ll~~A~~l~i 115 (149)
++.+.+||.+|++|.+
T Consensus 97 pemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 97 PEMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHHhhhhcC
Confidence 8999999999999863
No 19
>KOG0511|consensus
Probab=97.17 E-value=8.3e-05 Score=60.69 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=69.7
Q ss_pred ceEE--EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHHHHHH
Q psy17455 31 VDLR--SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLK 108 (149)
Q Consensus 31 ~Dv~--~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~ 108 (149)
.|++ ...|+.|.|||..|+++|.+ |..-+.+.....++|.-..+-+..|..+++|+|-..-.+-+++...++.
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~-----~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynalls 224 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSN-----YFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLS 224 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcc-----cCchhhhhccccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHh
Confidence 5777 56788899999999999998 7655544455666776677889999999999998866666777788999
Q ss_pred HHhhcCccchhhhhh
Q psy17455 109 AAERLQIRGLSESES 123 (149)
Q Consensus 109 ~A~~l~i~~L~~~~~ 123 (149)
+..+|++..|....+
T Consensus 225 i~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 225 IEVKFSKEKLSLEIS 239 (516)
T ss_pred hhhhccHHHhHHHHh
Confidence 999998887765433
No 20
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.81 E-value=0.00015 Score=57.97 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=74.7
Q ss_pred eEEEeeeeeecccCCCCChHHHHHhcCC---CCCCCCeEEeC-CCCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcC
Q psy17455 39 QYLKAHKVVLCTCSPVFEIPLFEMLLSQ---HNDERPILIFS-ETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQ 114 (149)
Q Consensus 39 ~~~~aHk~vLaa~S~~~~~~~f~~~f~~---~~~~~~~i~l~-~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~ 114 (149)
+.|.|.+-+|-..=.| |+.++.. ......+|.|. +.+-.+|+-+++|+......+++.|+..++.-|++|+
T Consensus 14 rdF~C~~~lL~~~M~Y-----F~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~ 88 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRY-----FAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQ 88 (317)
T ss_pred eeeeccHHHHHHhhHH-----HHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhc
Confidence 5799999999999999 9999854 44555667777 7889999999999999989999999999999999999
Q ss_pred ccchhhhhhhccccC
Q psy17455 115 IRGLSESESTTQTAV 129 (149)
Q Consensus 115 i~~L~~~~~~~~~~~ 129 (149)
|+.|++.|-.+...+
T Consensus 89 M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 89 MESLVEECLQYCHDH 103 (317)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999887766543
No 21
>KOG0511|consensus
Probab=96.64 E-value=0.00031 Score=57.44 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=64.4
Q ss_pred eEEEeeeeeecccCCCCChHHHHHhcCC--C----CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhh
Q psy17455 39 QYLKAHKVVLCTCSPVFEIPLFEMLLSQ--H----NDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAER 112 (149)
Q Consensus 39 ~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~----~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~ 112 (149)
.++|||+++++. ++| |+.||.+ . ....+...++.....+.+.+++|+|+.+..|.++-+.+++..|++
T Consensus 301 ~RyP~hla~i~R-~ey-----fk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~ 374 (516)
T KOG0511|consen 301 DRYPAHLARILR-VEY-----FKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADK 374 (516)
T ss_pred ccccHHHHHHHH-HHH-----HHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhH
Confidence 459999999875 678 9999875 1 233445667788899999999999999999999999999999988
Q ss_pred cCcc--c-hhhhhhhcccc
Q psy17455 113 LQIR--G-LSESESTTQTA 128 (149)
Q Consensus 113 l~i~--~-L~~~~~~~~~~ 128 (149)
+.+. + |+.+.+..+++
T Consensus 375 lal~~dr~Lkt~as~~itq 393 (516)
T KOG0511|consen 375 LALADDRLLKTAASAEITQ 393 (516)
T ss_pred hhhhhhhhhhhhhhHHHHH
Confidence 8664 2 45555444444
No 22
>KOG1724|consensus
Probab=96.44 E-value=0.0021 Score=46.91 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=63.2
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCC--CeEEeCCCCHHHHHHHhhhhcCCccc---------------
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDER--PILIFSETKFNELKSMIDYMYKGEVN--------------- 97 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~--~~i~l~~~~~~~~~~ll~f~Ytg~~~--------------- 97 (149)
..+|+.|.+-..+.. .|.. +..++....... ..|.++.|....|..+++|++.-+-.
T Consensus 11 SsDG~~f~ve~~~a~-~s~~-----i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~ 84 (162)
T KOG1724|consen 11 SSDGEIFEVEEEVAR-QSQT-----ISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETD 84 (162)
T ss_pred ccCCceeehhHHHHH-HhHH-----HHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCC
Confidence 557777777665543 3554 666664322222 58999999999999999999873321
Q ss_pred ----------CChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455 98 ----------IAPDELNHFLKAAERLQIRGLSESESTTQTA 128 (149)
Q Consensus 98 ----------i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~ 128 (149)
+...++.+++.||.+|+|++|.++|....-.
T Consensus 85 i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~ 125 (162)
T KOG1724|consen 85 IPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVAN 125 (162)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 2334688999999999999999988765544
No 23
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.42 E-value=0.0037 Score=38.24 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=41.0
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhc
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMY 92 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Y 92 (149)
..||+.|.+.+.+.. .|.. ++.++.........|.+++++...++.+++|++
T Consensus 7 SsDg~~f~V~~~~a~-~S~~-----i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 7 SSDGQEFEVSREAAK-QSKT-----IKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp ETTSEEEEEEHHHHT-TSHH-----HHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHH
T ss_pred cCCCCEEEeeHHHHH-HhHH-----HHHHHhhhcccccccccCccCHHHHHHHHHHHH
Confidence 568999999887665 6888 999886533333389999999999999999996
No 24
>KOG1987|consensus
Probab=96.29 E-value=0.0024 Score=50.30 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=66.9
Q ss_pred CCeEEEeeeeeecccCCCCChHHHHHhcCCC--CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHH---HHHHHHh
Q psy17455 37 EGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--NDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELN---HFLKAAE 111 (149)
Q Consensus 37 ~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~--~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~---~ll~~A~ 111 (149)
.+..+.+|+++++++++. |+.++... ......+.+.+.++..++.+..|.|+..-....+... .++.+|.
T Consensus 108 ~~g~~~~~~~~~~a~~~V-----~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f 182 (297)
T KOG1987|consen 108 SNGFLVAHKLVLVARSEV-----FEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAF 182 (297)
T ss_pred cCcEEEcCceEEEeeecc-----eeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhcc
Confidence 356699999999999999 88877542 2333444788899999999999999976554444443 7788889
Q ss_pred hcCccchhhhhhhcccc
Q psy17455 112 RLQIRGLSESESTTQTA 128 (149)
Q Consensus 112 ~l~i~~L~~~~~~~~~~ 128 (149)
+++.+.|+..|......
T Consensus 183 ~~~~~~lk~~~~~~l~~ 199 (297)
T KOG1987|consen 183 KYKNRHLKLACMPVLLS 199 (297)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 99999999988865543
No 25
>KOG2714|consensus
Probab=95.76 E-value=0.031 Score=46.48 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=64.6
Q ss_pred cceEE--EeCCeEEEeeeeeecccC--CCCChHHHHHhcCCC---CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhh
Q psy17455 30 LVDLR--SAEGQYLKAHKVVLCTCS--PVFEIPLFEMLLSQH---NDERPILIFSETKFNELKSMIDYMYKGEVNIAPDE 102 (149)
Q Consensus 30 ~~Dv~--~~~g~~~~aHk~vLaa~S--~~~~~~~f~~~f~~~---~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~ 102 (149)
-.|++ -|||+.|..-+--|+... .+ |.+++.+. .....-..+=+-+|+.|..+|+|+-||++.++.-.
T Consensus 9 ~~~~V~lNVGGriF~Ts~qTL~~~~~DSf-----fsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~ 83 (465)
T KOG2714|consen 9 SGDRVKLNVGGRIFETSAQTLTWIPRDSF-----FSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVF 83 (465)
T ss_pred CCceEEEecCceEEecchhhhhcCCcchH-----HHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCc
Confidence 34677 799999998888888776 56 78888642 22222334446789999999999999999996554
Q ss_pred HHHHH-HHHhhcCccchhh
Q psy17455 103 LNHFL-KAAERLQIRGLSE 120 (149)
Q Consensus 103 ~~~ll-~~A~~l~i~~L~~ 120 (149)
...++ .=|.+|++..|.+
T Consensus 84 ~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 84 PERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhhhhhhcCcHHHHH
Confidence 44444 4899999999987
No 26
>KOG1665|consensus
Probab=95.15 E-value=0.069 Score=41.19 Aligned_cols=88 Identities=13% Similarity=0.199 Sum_probs=63.0
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC----CCCCCeEEeCCCCHHHHHHHhhhhcCCcccC-ChhhHHHHHHH
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH----NDERPILIFSETKFNELKSMIDYMYKGEVNI-APDELNHFLKA 109 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~----~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i-~~~~~~~ll~~ 109 (149)
-++|+.|-.-+--|..+-|= .| +..||.+. +....--.+-+-+|.-|+.+|.|+-.|++.. +.-++..+++.
T Consensus 14 nigGk~f~TTidTlv~rEPD--SM-La~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLee 90 (302)
T KOG1665|consen 14 NIGGKKFCTTIDTLVIREPD--SM-LAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEE 90 (302)
T ss_pred ecCCeEEEEeehhhcccCch--HH-HHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHH
Confidence 67888887666666655441 11 56777641 2222233444678999999999999998754 45578999999
Q ss_pred HhhcCccchhhhhhhc
Q psy17455 110 AERLQIRGLSESESTT 125 (149)
Q Consensus 110 A~~l~i~~L~~~~~~~ 125 (149)
|++|+|-+|++..+..
T Consensus 91 Arff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 91 ARFFQILSLKDHLEDS 106 (302)
T ss_pred hhHHhhHhHHhHHhhh
Confidence 9999999999987763
No 27
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.041 Score=38.74 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=63.3
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCccc-----------------
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVN----------------- 97 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~----------------- 97 (149)
..+|+.|.+.+. +|-+|-. .+.++.........+..+++...+|..+++|+-..+-.
T Consensus 8 s~dge~F~vd~~-iAerSiL-----ikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D 81 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSIL-----IKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSD 81 (158)
T ss_pred ecCCcEEEehHH-HHHHHHH-----HHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCcc
Confidence 567777877664 4556666 88877654344445778899999999999999543211
Q ss_pred --------CChhhHHHHHHHHhhcCccchhhhhhhccccCC
Q psy17455 98 --------IAPDELNHFLKAAERLQIRGLSESESTTQTAVH 130 (149)
Q Consensus 98 --------i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~ 130 (149)
+..+.+.++..+|++|.++.|.++|.......+
T Consensus 82 ~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi 122 (158)
T COG5201 82 FWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122 (158)
T ss_pred HHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 122346678889999999999999886655433
No 28
>KOG2715|consensus
Probab=90.79 E-value=0.52 Score=34.79 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=64.7
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCC------CCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHHHHHH
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHN------DERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLK 108 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~------~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~ 108 (149)
-|||..|..-|.-|+.-+.. |-.-|.+.+ ....--.+-+-+|.-|..+|+|+-.|++.++.-.-..++.
T Consensus 26 NVGGt~f~TtktTl~rdp~s-----Fl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 26 NVGGTVFLTTKTTLPRDPKS-----FLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred ecCCEEEEeeeeccccCcHH-----HHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 78999999999999999877 655554322 1112233446788999999999999999988744455899
Q ss_pred HHhhcCccchhhhhhhc
Q psy17455 109 AAERLQIRGLSESESTT 125 (149)
Q Consensus 109 ~A~~l~i~~L~~~~~~~ 125 (149)
-|++|.++.|..+..+.
T Consensus 101 EAefyn~~~li~likd~ 117 (210)
T KOG2715|consen 101 EAEFYNDPSLIQLIKDR 117 (210)
T ss_pred hhhccCChHHHHHHHHH
Confidence 99999999888765543
No 29
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=89.12 E-value=0.27 Score=31.30 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=25.5
Q ss_pred CChhhHHHHHHHHhhcCccchhhhhhhccccCC
Q psy17455 98 IAPDELNHFLKAAERLQIRGLSESESTTQTAVH 130 (149)
Q Consensus 98 i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~ 130 (149)
++.+.+.+|+.||.+|+|++|.+.|...+...+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i 43 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMI 43 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHh
Confidence 466789999999999999999999886554433
No 30
>KOG3840|consensus
Probab=85.11 E-value=3 Score=33.81 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=56.2
Q ss_pred EE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC-----CCCCCCeEEeC-CCCHHHHHHHhhhhcCCcccCChh-hHH
Q psy17455 33 LR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ-----HNDERPILIFS-ETKFNELKSMIDYMYKGEVNIAPD-ELN 104 (149)
Q Consensus 33 v~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~-----~~~~~~~i~l~-~~~~~~~~~ll~f~Ytg~~~i~~~-~~~ 104 (149)
++ .+++..|-.-+.+|.+.-.- | ...||.+ ......+..+- +++..+|+++|+|.-+|.+.-++. .+.
T Consensus 98 ~t~lvd~~rf~v~q~llt~~p~T---m-lg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvp 173 (438)
T KOG3840|consen 98 VCLLVDQTRFLVSQRLLTSKPDT---M-LGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVS 173 (438)
T ss_pred eEEEeeeEEEEeeeeeecCCcch---h-hhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchH
Confidence 44 77888888888888775332 1 3444543 23444555554 799999999999999998865443 577
Q ss_pred HHHHHHhhcCcc
Q psy17455 105 HFLKAAERLQIR 116 (149)
Q Consensus 105 ~ll~~A~~l~i~ 116 (149)
+|-++.++|.|+
T Consensus 174 ELrEACDYLlip 185 (438)
T KOG3840|consen 174 ELREACDYLLVP 185 (438)
T ss_pred HHHhhcceEEee
Confidence 788888887664
No 31
>KOG2723|consensus
Probab=84.29 E-value=6.5 Score=30.19 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=59.1
Q ss_pred CCcceEE--EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCC----CCCCeEEeCCCCHHHHHHHhhhhcCCcccCCh-
Q psy17455 28 ETLVDLR--SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHN----DERPILIFSETKFNELKSMIDYMYKGEVNIAP- 100 (149)
Q Consensus 28 ~~~~Dv~--~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~----~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~- 100 (149)
..+.|++ -+||..+.. + |++-+.| .......||++.. ......-| +-+-..|+.||+|+-|-.+.++.
T Consensus 5 ~~~~~~v~lnvGG~~ytt-~--l~tL~~~-~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~ 79 (221)
T KOG2723|consen 5 SEYPDVVELNVGGAIYTT-R--LGTLTKF-PDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPED 79 (221)
T ss_pred cccCCceeeccCCeEEEe-e--ccceeec-hHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchh
Confidence 4567888 566664443 2 3332332 3334677776411 11111222 34567899999999996666666
Q ss_pred -hhHHHHHHHHhhcCccchhhhhhhccc
Q psy17455 101 -DELNHFLKAAERLQIRGLSESESTTQT 127 (149)
Q Consensus 101 -~~~~~ll~~A~~l~i~~L~~~~~~~~~ 127 (149)
.++..+..-|++|+++.+.........
T Consensus 80 f~e~~~L~rEA~f~~l~~~~~~l~~~~~ 107 (221)
T KOG2723|consen 80 FAEVERLVREAEFFQLEAPVTYLLNSGQ 107 (221)
T ss_pred hhhHHHHHHHHHHHccccHHHHHhcccc
Confidence 578899999999999987775544333
No 32
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=63.70 E-value=30 Score=23.92 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=37.6
Q ss_pred eEEEeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeC-C--CCHHHHHHHhhhhcCCc
Q psy17455 32 DLRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS-E--TKFNELKSMIDYMYKGE 95 (149)
Q Consensus 32 Dv~~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~-~--~~~~~~~~ll~f~Ytg~ 95 (149)
||..-++..+.+|--+++++||. ....=..-+-.-..+..| + --.+..+..++++|.|.
T Consensus 15 dVrl~~~~~i~V~i~l~ST~sP~-----l~k~~f~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s 76 (117)
T PF09593_consen 15 DVRLMEDMSIFVHIQLFSTRSPA-----LIKKKFIIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDS 76 (117)
T ss_pred EEEecCCCEEEEEEEEEECCChH-----HheEEEEEeccCCCeECCcccCcHHHHHHHHHHHHhCCC
Confidence 45433667899999999999998 533210111122233333 2 23678899999999985
No 33
>KOG4390|consensus
Probab=55.78 E-value=15 Score=30.90 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=56.6
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCC-----CCeEEeCCCCHHHHHHHhhhhcCCcccCChhhHHHHH-H
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDE-----RPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFL-K 108 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~-----~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll-~ 108 (149)
-+.|+.|..+|.-|-. | -..++++.++. ...=.+-+-+|+.|+.+|.|--||++.-+..+....+ +
T Consensus 45 NvSGrRFeTWknTLer---y-----PdTLLGSsEkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDe 116 (632)
T KOG4390|consen 45 NVSGRRFETWKNTLER---Y-----PDTLLGSSEKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDE 116 (632)
T ss_pred eccccchhHHHhHHHh---C-----chhhhCCcchheeecCCcccccccCChHHHHHHHHHhhcCcccCchHHHHHHhhh
Confidence 5677888877776654 4 44455543211 1111334678999999999999999998887654433 2
Q ss_pred HHhhcC-ccchhhhhhhccccCCCCCc
Q psy17455 109 AAERLQ-IRGLSESESTTQTAVHYPDD 134 (149)
Q Consensus 109 ~A~~l~-i~~L~~~~~~~~~~~~~~~~ 134 (149)
--.+|+ +++|..-|.-..-..-..+|
T Consensus 117 ELaF~Gl~PeligDCCyEeYkDrkrEN 143 (632)
T KOG4390|consen 117 ELAFYGLVPELIGDCCYEEYKDRKREN 143 (632)
T ss_pred hhhHhcccHHHHhhhhhHHHhhhhhhh
Confidence 223555 57777666644444333333
No 34
>KOG1778|consensus
Probab=49.17 E-value=3 Score=33.77 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=48.6
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChhh--HHHHHHHHhh
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDE--LNHFLKAAER 112 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~~--~~~ll~~A~~ 112 (149)
......+++|+.+|+..|+.|..+.++. ........+.+-.++...+..+.+++|.. ++.-+.. ...++.+...
T Consensus 32 ~~~~~~~~~~s~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~ 107 (319)
T KOG1778|consen 32 TDVKDLIPAHSLVLGPASPVFKKVLKQP---CRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHV 107 (319)
T ss_pred hhhhhhhHHHHhcccccchHHHHHHhhh---cchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhh
Confidence 3445679999999999999933333332 11223344555567777788888888876 3322222 2223333344
Q ss_pred cCccchhhhhhh
Q psy17455 113 LQIRGLSESEST 124 (149)
Q Consensus 113 l~i~~L~~~~~~ 124 (149)
+.++.++..+..
T Consensus 108 ~~v~~~~~d~~~ 119 (319)
T KOG1778|consen 108 YVVPQPKADCDP 119 (319)
T ss_pred hhccCccccCCc
Confidence 555554444443
No 35
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=39.89 E-value=26 Score=18.99 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=12.7
Q ss_pred hcCCccc----CChhhHHHHHHHHh
Q psy17455 91 MYKGEVN----IAPDELNHFLKAAE 111 (149)
Q Consensus 91 ~Ytg~~~----i~~~~~~~ll~~A~ 111 (149)
+|.|++. ++++.+++++.+|.
T Consensus 11 fY~G~V~Vfd~v~~~Ka~~im~lA~ 35 (36)
T PF06200_consen 11 FYGGQVCVFDDVPPDKAQEIMLLAS 35 (36)
T ss_pred EECCEEEEeCCCCHHHHHHHHHHhc
Confidence 4666652 45666666666654
No 36
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=33.36 E-value=28 Score=23.85 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=18.4
Q ss_pred ccCChhhHHHHHHHHhhcCccchh
Q psy17455 96 VNIAPDELNHFLKAAERLQIRGLS 119 (149)
Q Consensus 96 ~~i~~~~~~~ll~~A~~l~i~~L~ 119 (149)
..+..+.+++|+.+|.-|+++.|.
T Consensus 4 F~L~~edl~ql~kas~~l~l~dl~ 27 (112)
T PF09116_consen 4 FELKAEDLQQLMKASRTLGLPDLC 27 (112)
T ss_dssp EEE-HHHHHHHHHHHHHCT--EEE
T ss_pred EEecHHHHHHHHHHHHhcCCCeEE
Confidence 357889999999999999999885
No 37
>PHA02790 Kelch-like protein; Provisional
Probab=25.50 E-value=72 Score=27.02 Aligned_cols=32 Identities=3% Similarity=-0.093 Sum_probs=26.9
Q ss_pred cCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455 97 NIAPDELNHFLKAAERLQIRGLSESESTTQTA 128 (149)
Q Consensus 97 ~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~ 128 (149)
.++++|...++.+|+.|++++|.+.+..+...
T Consensus 119 ~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~ 150 (480)
T PHA02790 119 DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAK 150 (480)
T ss_pred hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 57889999999999999999999887654433
No 38
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=23.03 E-value=51 Score=26.00 Aligned_cols=26 Identities=15% Similarity=0.590 Sum_probs=19.4
Q ss_pred eEEeCCC--CHHHHHHHhhhh-cCCcccC
Q psy17455 73 ILIFSET--KFNELKSMIDYM-YKGEVNI 98 (149)
Q Consensus 73 ~i~l~~~--~~~~~~~ll~f~-Ytg~~~i 98 (149)
+|.+.++ +++..+.+++|+ |+.++.+
T Consensus 2 viV~TDi~~EpDD~~SlvR~LlYsNe~di 30 (260)
T PF07632_consen 2 VIVLTDIGNEPDDAQSLVRLLLYSNEFDI 30 (260)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTGGGSEE
T ss_pred EEEeCCCCCCCchHHHHHHHHHhccccce
Confidence 5677788 999999999998 8877653
No 39
>KOG3713|consensus
Probab=21.42 E-value=1.1e+02 Score=26.36 Aligned_cols=41 Identities=10% Similarity=0.237 Sum_probs=31.1
Q ss_pred CCCHHHHHHHhhhhcCCcccCChhhHH-HHHHHHhhcCccch
Q psy17455 78 ETKFNELKSMIDYMYKGEVNIAPDELN-HFLKAAERLQIRGL 118 (149)
Q Consensus 78 ~~~~~~~~~ll~f~Ytg~~~i~~~~~~-~ll~~A~~l~i~~L 118 (149)
|-.|.+|..+++|.+||++....+-.. ...+=-++++|+..
T Consensus 86 DR~P~~F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~~ 127 (477)
T KOG3713|consen 86 DRHPGAFAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDEA 127 (477)
T ss_pred ccChHHHHHHHHHHhcCeeccccccchHHHHHHHHHhCCChh
Confidence 467999999999999999988776543 34445567887654
No 40
>PHA03098 kelch-like protein; Provisional
Probab=20.51 E-value=88 Score=26.57 Aligned_cols=32 Identities=6% Similarity=-0.081 Sum_probs=27.3
Q ss_pred cCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455 97 NIAPDELNHFLKAAERLQIRGLSESESTTQTA 128 (149)
Q Consensus 97 ~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~ 128 (149)
.++.+|+..++.+|..|++..|.+.|...+..
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~ 135 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRN 135 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 46889999999999999999999988766543
No 41
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=20.36 E-value=1.4e+02 Score=16.56 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=18.0
Q ss_pred HHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccc
Q psy17455 81 FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRG 117 (149)
Q Consensus 81 ~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~ 117 (149)
++.+...|+.+-.|++ .+-.+|..|+|+.
T Consensus 2 ee~l~~Ai~~v~~g~~--------S~r~AA~~ygVp~ 30 (45)
T PF05225_consen 2 EEDLQKAIEAVKNGKM--------SIRKAAKKYGVPR 30 (45)
T ss_dssp HHHHHHHHHHHHTTSS---------HHHHHHHHT--H
T ss_pred HHHHHHHHHHHHhCCC--------CHHHHHHHHCcCH
Confidence 4556667777766654 3566899999875
Done!