Query psy17455
Match_columns 149
No_of_seqs 176 out of 1088
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 22:54:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z8h_A Transcription regulator 100.0 7.6E-29 2.6E-33 174.9 8.9 124 6-134 12-137 (138)
2 3ohu_A Transcription regulator 100.0 1E-28 3.4E-33 171.3 7.4 117 4-125 6-124 (125)
3 3b84_A Zinc finger and BTB dom 99.9 1.1E-28 3.9E-33 170.0 6.1 113 9-128 3-116 (119)
4 1r29_A B-cell lymphoma 6 prote 99.9 3.8E-28 1.3E-32 168.8 8.3 121 3-128 2-125 (127)
5 2yy9_A Zinc finger and BTB dom 99.9 1.8E-28 6.2E-33 172.6 6.7 119 10-135 5-124 (135)
6 2ihc_A Transcription regulator 99.9 1.5E-28 5.1E-33 170.5 5.4 118 4-126 3-122 (124)
7 1buo_A POZ domain, protein (pr 99.9 3.7E-28 1.3E-32 167.8 7.3 116 5-128 3-119 (121)
8 2if5_A Zinc finger and BTB dom 99.9 4.9E-28 1.7E-32 166.6 7.7 114 8-126 3-119 (120)
9 2ppi_A Gigaxonin; BTB domain, 99.9 6.7E-28 2.3E-32 171.5 7.3 118 4-126 21-143 (144)
10 2vpk_A Myoneurin; transcriptio 99.9 7.3E-28 2.5E-32 164.9 6.8 110 11-127 3-115 (116)
11 3ga1_A Nucleus accumbens-assoc 99.9 5.3E-28 1.8E-32 168.7 5.5 117 6-129 9-127 (129)
12 2q81_A MIZ-1 protein; BTB/POZ 99.9 3E-28 1E-32 167.8 2.9 114 6-127 3-117 (119)
13 3fkc_A Transcriptional regulat 99.9 4.1E-27 1.4E-31 161.8 8.3 111 3-121 4-116 (116)
14 3hve_A Gigaxonin; ubiquitin, c 99.9 2.5E-27 8.7E-32 182.1 5.7 137 5-146 6-147 (256)
15 3i3n_A Kelch-like protein 11; 99.9 1E-26 3.4E-31 180.9 5.9 137 5-146 7-155 (279)
16 4eoz_A Speckle-type POZ protei 99.9 2.5E-27 8.5E-32 167.3 1.8 129 14-147 9-140 (145)
17 3htm_A Speckle-type POZ protei 99.9 1.2E-26 4.2E-31 168.0 4.8 129 13-146 17-148 (172)
18 3m5b_A Zinc finger and BTB dom 99.9 2.4E-26 8.1E-31 158.8 5.6 110 5-128 7-117 (119)
19 2vkp_A BTB/POZ domain-containi 99.9 1.2E-25 4.1E-30 151.9 3.6 99 24-128 2-107 (109)
20 3hqi_A Speckle-type POZ protei 99.9 6.1E-24 2.1E-28 167.3 7.8 129 14-147 158-289 (312)
21 2ast_A S-phase kinase-associat 99.5 6.2E-15 2.1E-19 106.2 4.1 97 35-137 7-133 (159)
22 4ajy_C Transcription elongatio 99.4 5.6E-13 1.9E-17 88.5 5.5 75 35-115 8-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.3 1.5E-12 5E-17 92.0 3.5 96 35-138 8-129 (141)
24 2p1m_A SKP1-like protein 1A; F 99.2 5.3E-12 1.8E-16 90.9 1.9 96 35-137 10-132 (160)
25 2fnj_C Transcription elongatio 98.7 6.6E-09 2.3E-13 68.6 3.2 75 35-115 7-96 (96)
26 1hv2_A Elongin C, ELC1; protei 98.7 1.8E-08 6.2E-13 66.9 4.8 75 35-115 10-99 (99)
27 3v7d_A Suppressor of kinetocho 98.6 2.9E-08 9.9E-13 71.9 4.8 86 35-126 13-129 (169)
28 3drz_A BTB/POZ domain-containi 98.4 5.6E-07 1.9E-11 60.3 5.9 92 29-126 3-104 (107)
29 1vcb_B Protein (elongin C); tu 98.3 5.3E-07 1.8E-11 61.0 3.9 75 35-115 23-112 (112)
30 3drx_A BTB/POZ domain-containi 97.6 0.0001 3.5E-09 54.6 5.7 94 27-126 7-110 (202)
31 3kvt_A Potassium channel prote 96.4 0.0042 1.5E-07 41.8 4.4 80 35-119 10-93 (115)
32 1s1g_A Potassium voltage-gated 96.3 0.011 3.8E-07 40.3 6.3 83 31-122 12-104 (124)
33 2nz0_B Potassium voltage-gated 95.8 0.021 7.3E-07 39.7 5.8 84 30-122 33-126 (140)
34 1t1d_A Protein (potassium chan 95.7 0.018 6.2E-07 37.7 4.9 89 33-123 3-95 (100)
35 1nn7_A Potassium channel KV4.2 95.3 0.013 4.5E-07 38.7 3.1 82 33-119 2-87 (105)
36 2r9r_B Paddle chimera voltage 87.6 1.2 4E-05 37.0 6.3 90 28-119 48-141 (514)
37 2eqx_A Kelch repeat and BTB do 76.9 1.9 6.4E-05 27.7 2.9 35 94-128 4-38 (105)
38 3htm_A Speckle-type POZ protei 54.1 7.4 0.00025 26.4 2.3 33 97-129 131-163 (172)
39 3hqi_A Speckle-type POZ protei 41.8 14 0.00046 27.9 2.3 33 97-129 271-303 (312)
40 1pd7_B MAD1; PAH2, SIN3, eukar 28.1 20 0.00069 17.2 0.8 14 101-114 3-16 (26)
41 3i3n_A Kelch-like protein 11; 26.3 37 0.0013 25.0 2.4 31 97-127 138-168 (279)
42 3hve_A Gigaxonin; ubiquitin, c 25.3 30 0.001 25.1 1.7 31 97-127 130-160 (256)
43 4h63_H Mediator of RNA polymer 21.7 40 0.0014 24.4 1.7 14 82-95 186-199 (200)
No 1
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.95 E-value=7.6e-29 Score=174.93 Aligned_cols=124 Identities=19% Similarity=0.339 Sum_probs=115.0
Q ss_pred cceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeC-CCCHHH
Q psy17455 6 QEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS-ETKFNE 83 (149)
Q Consensus 6 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~-~~~~~~ 83 (149)
..|..+.|++.+++.|++++.++.+|||+ .++|+.|+|||+|||++|+| |+++|.+.......|.++ ++++++
T Consensus 12 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~~f~~~~~e~~~i~l~~~v~~~~ 86 (138)
T 2z8h_A 12 FAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSY-----FHSRIVGQTDAELTVTLPEEVTVKG 86 (138)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHTTCCCTTEEEECCTTSCHHH
T ss_pred eEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHH-----HHHHHhcCCCCCceEEeCCCCCHHH
Confidence 44566778999999999999999999999 99999999999999999999 999998765556789995 899999
Q ss_pred HHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCc
Q psy17455 84 LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDD 134 (149)
Q Consensus 84 ~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~ 134 (149)
|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+.+...+.+.+
T Consensus 87 ~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn 137 (138)
T 2z8h_A 87 FEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDST 137 (138)
T ss_dssp HHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999887765
No 2
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.95 E-value=1e-28 Score=171.29 Aligned_cols=117 Identities=18% Similarity=0.313 Sum_probs=109.3
Q ss_pred CCcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCC-CCH
Q psy17455 4 GSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSE-TKF 81 (149)
Q Consensus 4 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~-~~~ 81 (149)
+...+..+.|+..+++.++++++++.+|||+ .++|+.|+|||.||+++|+| |+++|.........|.+++ +++
T Consensus 6 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~~f~~~~~e~~~i~l~~~~~~ 80 (125)
T 3ohu_A 6 PMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEY-----FWQALVGQTKNDLVVSLPEEVTA 80 (125)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHH-----HHHHHTTCCCSSCEEECCTTCCH
T ss_pred cceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHH-----HHHHhcCCCCCCcEEEeCCCCCH
Confidence 4456677788999999999999999999999 99999999999999999999 9999987666688999998 999
Q ss_pred HHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhc
Q psy17455 82 NELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTT 125 (149)
Q Consensus 82 ~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~ 125 (149)
++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+.
T Consensus 81 ~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 81 RGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp HHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred HHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999865
No 3
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=169.99 Aligned_cols=113 Identities=19% Similarity=0.293 Sum_probs=104.7
Q ss_pred eecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHH
Q psy17455 9 CLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSM 87 (149)
Q Consensus 9 ~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~l 87 (149)
..+.|+..+++.+++++.++.+|||+ .++|+.|+|||.||+++|+| |+++|.... ...|.++++++++|+.+
T Consensus 3 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~~f~~~~--~~~i~l~~~~~~~f~~l 75 (119)
T 3b84_A 3 SFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHF-----FQSLYGDGS--GGSVVLPAGFAEIFGLL 75 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHTTTT--CCCEEECGGGHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHH-----HHHHHCCCC--CCeEEeCCCCHHHHHHH
Confidence 34567999999999999999999999 99999999999999999999 999998644 67899999999999999
Q ss_pred hhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455 88 IDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA 128 (149)
Q Consensus 88 l~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~ 128 (149)
|+|+|||++.++.+++.+++.+|++|++++|++.|++.+.+
T Consensus 76 l~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 76 LDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987764
No 4
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.95 E-value=3.8e-28 Score=168.81 Aligned_cols=121 Identities=17% Similarity=0.334 Sum_probs=109.9
Q ss_pred CCCcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCC-CCCeEEe-CCC
Q psy17455 3 EGSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHND-ERPILIF-SET 79 (149)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~-~~~~i~l-~~~ 79 (149)
+++..+..+.|++.+++.+++++.++.+|||+ .++|+.|+|||.||+++|+| |++||..... ....|.+ +++
T Consensus 2 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~-----F~~~f~~~~~e~~~~i~l~~~~ 76 (127)
T 1r29_A 2 SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGL-----FYSIFTDQLKRNLSVINLDPEI 76 (127)
T ss_dssp ---CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHTSTTTTTCSEEECCTTS
T ss_pred CCCccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHH-----HHHHhcCCccCCCCEEEeCCCC
Confidence 34566778888999999999999999999999 99999999999999999999 9999986322 6789999 899
Q ss_pred CHHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455 80 KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA 128 (149)
Q Consensus 80 ~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~ 128 (149)
++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|+..+..
T Consensus 77 ~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 77 NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987654
No 5
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.95 E-value=1.8e-28 Score=172.59 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=102.2
Q ss_pred ecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHh
Q psy17455 10 LRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMI 88 (149)
Q Consensus 10 ~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll 88 (149)
.+.|+..+++.|+++++++.+|||+ .++|+.|+|||.||+++|+| |++||.... ...|.++++++++|+.+|
T Consensus 5 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~mf~~~~--~~~i~l~~~~~~~f~~lL 77 (135)
T 2yy9_A 5 SSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHF-----FQRIYGDGT--GGSVVLPAGFAEIFGLLL 77 (135)
T ss_dssp --CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHH-----HHHTCC------CCEEECGGGHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHH-----HHHHHcCCC--CCeEEeCCCCHHHHHHHH
Confidence 3567999999999999999999999 99999999999999999999 999998643 568999999999999999
Q ss_pred hhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCch
Q psy17455 89 DYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDD 135 (149)
Q Consensus 89 ~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~ 135 (149)
+|+|||++.++.+++.+++.+|++|+++.|++.|...+...+.....
T Consensus 78 ~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~ 124 (135)
T 2yy9_A 78 DFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQ 124 (135)
T ss_dssp HHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC--------
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999998887654443
No 6
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=170.53 Aligned_cols=118 Identities=20% Similarity=0.352 Sum_probs=107.6
Q ss_pred CCcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeC-CCCH
Q psy17455 4 GSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS-ETKF 81 (149)
Q Consensus 4 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~-~~~~ 81 (149)
+...|..+.|++.+++.+++++.++.+|||+ .++|+.|+|||.|||++|+| |++||.+.......|.++ ++++
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~y-----F~~mf~~~~~e~~~i~l~~~v~~ 77 (124)
T 2ihc_A 3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSY-----FHSRIVGQADGELNITLPEEVTV 77 (124)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHH-----HHHHHTTC---CEEEECCTTSCH
T ss_pred ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHH-----HHHHHcCCCCCCceEeecCCcCH
Confidence 3456777888999999999999999999999 99999999999999999999 999998765556789995 9999
Q ss_pred HHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcc
Q psy17455 82 NELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQ 126 (149)
Q Consensus 82 ~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~ 126 (149)
++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+.+
T Consensus 78 ~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 78 KGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp HHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred HHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999865
No 7
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.95 E-value=3.7e-28 Score=167.78 Aligned_cols=116 Identities=21% Similarity=0.309 Sum_probs=108.1
Q ss_pred CcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHH
Q psy17455 5 SQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNE 83 (149)
Q Consensus 5 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~ 83 (149)
...+..+.|++.+.+.++++++++.+|||+ .++|+.|+|||.||+++|+| |+++|.+ ....|.++++++++
T Consensus 3 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~~f~~---~~~~i~l~~~~~~~ 74 (121)
T 1buo_A 3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKM-----FEILFHR---NSQHYTLDFLSPKT 74 (121)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHH-----HHHHTTS---CCSEEEECSSCHHH
T ss_pred ceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHH-----HHHHHcC---CCcEEEeCCCCHHH
Confidence 356777889999999999999999999999 99999999999999999999 9999975 35689999999999
Q ss_pred HHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455 84 LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA 128 (149)
Q Consensus 84 ~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~ 128 (149)
|+.+|+|+|||++.++.+++.+++.+|++|++++|++.|++.+..
T Consensus 75 f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 119 (121)
T 1buo_A 75 FQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987643
No 8
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.95 E-value=4.9e-28 Score=166.58 Aligned_cols=114 Identities=20% Similarity=0.348 Sum_probs=104.6
Q ss_pred eeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHH
Q psy17455 8 FCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNEL 84 (149)
Q Consensus 8 ~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~ 84 (149)
+..+.|++.+++.++++++++.+|||+ .++|+.|+|||.||+++|+| |+++|.+ .+.....|.++++++++|
T Consensus 3 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~-----F~~~f~~~~~e~~~~~i~l~~~~~~~f 77 (120)
T 2if5_A 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQY-----FKKLFTSGAVVDQQNVYEIDFVSAEAL 77 (120)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHHC-----CCSEEECCSSCHHHH
T ss_pred cCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHH-----HHHHhcCCccccCCceEEeCCCCHHHH
Confidence 345678999999999999999999999 99999999999999999999 9999975 456678999999999999
Q ss_pred HHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcc
Q psy17455 85 KSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQ 126 (149)
Q Consensus 85 ~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~ 126 (149)
+.+|+|+|||++.++.+++.+++.+|++|++++|++.|++.+
T Consensus 78 ~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 78 TALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998764
No 9
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.94 E-value=6.7e-28 Score=171.54 Aligned_cols=118 Identities=14% Similarity=0.287 Sum_probs=106.4
Q ss_pred CCcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC----CCCCCeEEeCC
Q psy17455 4 GSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH----NDERPILIFSE 78 (149)
Q Consensus 4 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~----~~~~~~i~l~~ 78 (149)
.+..+..+.|+..+++.+++++.++.+|||+ .++|+.|+|||+|||++|+| |++||.+. +.....|.+++
T Consensus 21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~mf~~~~~e~e~~~~~I~l~~ 95 (144)
T 2ppi_A 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPY-----IRTKLNYNPPKDDGSTYKIELEG 95 (144)
T ss_dssp CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHHHCC-----CCCEEECCS
T ss_pred eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHH-----HHHHHcCCCccccCCCcEEEeCC
Confidence 4466778888999999999999999999999 99999999999999999999 99999642 35678999999
Q ss_pred CCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcc
Q psy17455 79 TKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQ 126 (149)
Q Consensus 79 ~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~ 126 (149)
+++++|+.+|+|+|||++.++.+++.+++.+|++|++++|++.|++.+
T Consensus 96 v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 96 ISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp SCHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998764
No 10
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.94 E-value=7.3e-28 Score=164.93 Aligned_cols=110 Identities=16% Similarity=0.284 Sum_probs=102.9
Q ss_pred cccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeC--CCCHHHHHHH
Q psy17455 11 RANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS--ETKFNELKSM 87 (149)
Q Consensus 11 ~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~--~~~~~~~~~l 87 (149)
+.|+..+++.+++++.++.+|||+ .++|+.|+|||.||+++|+| |++||.+. ....|.++ ++++++|+.+
T Consensus 3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~y-----F~~~f~~~--~~~~i~l~~~~~~~~~f~~l 75 (116)
T 2vpk_A 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEY-----FGAIYRST--SENNVFLDQSQVKADGFQKL 75 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHTTC--CCSCEECCTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHH-----HHHHHcCC--CCCeEEeecCCCCHHHHHHH
Confidence 467899999999999999999999 99999999999999999999 99999865 46677888 9999999999
Q ss_pred hhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccc
Q psy17455 88 IDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQT 127 (149)
Q Consensus 88 l~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~ 127 (149)
|+|+|||++.++.+++.+++.+|++|++++|++.|++.+.
T Consensus 76 l~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 76 LEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997653
No 11
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.3e-28 Score=168.67 Aligned_cols=117 Identities=16% Similarity=0.301 Sum_probs=102.3
Q ss_pred cceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeC-CCCHHH
Q psy17455 6 QEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS-ETKFNE 83 (149)
Q Consensus 6 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~-~~~~~~ 83 (149)
..+..+.|+..+++.+++++.++.+|||+ .++|+.|+|||.||+++|+| |+++|... ...+|.++ ++++++
T Consensus 9 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~-----F~~~f~~~--~~~~i~l~~~~~~~~ 81 (129)
T 3ga1_A 9 LQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSY-----FRDLFNNS--RSAVVELPAAVQPQS 81 (129)
T ss_dssp EEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHH-----HHHHHHHC--CCSEEECCTTCCHHH
T ss_pred EEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHH-----HHHHHcCC--CCCEEEECCCCCHHH
Confidence 34556677999999999999999999999 99999999999999999999 99999765 67799997 999999
Q ss_pred HHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccC
Q psy17455 84 LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAV 129 (149)
Q Consensus 84 ~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~ 129 (149)
|+.+|+|+|||++.++.+++.+++.+|++|++++|++.|.+.+...
T Consensus 82 f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 82 FQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999887664
No 12
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.94 E-value=3e-28 Score=167.83 Aligned_cols=114 Identities=20% Similarity=0.400 Sum_probs=104.3
Q ss_pred cceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHH
Q psy17455 6 QEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNEL 84 (149)
Q Consensus 6 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~ 84 (149)
..+..+.|+..+++.++++++++.+|||+ .++|+.|+|||.||+++|+| |++||.+ ...+|.++++++++|
T Consensus 3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~y-----F~~~f~~---~~~~i~l~~~~~~~f 74 (119)
T 2q81_A 3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEY-----FKMLFVD---QKDVVHLDISNAAGL 74 (119)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHHH---CCSGGGGGGCCHHHH
T ss_pred cccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHH-----HHHHHcC---CCCEEEeCCCCHHHH
Confidence 34566788999999999999999999999 99999999999999999999 9999975 345788899999999
Q ss_pred HHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccc
Q psy17455 85 KSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQT 127 (149)
Q Consensus 85 ~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~ 127 (149)
+.+|+|+|||++.++.+++.+++.+|++|++++|++.|.+.+.
T Consensus 75 ~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 75 GQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999997653
No 13
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.94 E-value=4.1e-27 Score=161.75 Aligned_cols=111 Identities=16% Similarity=0.279 Sum_probs=103.5
Q ss_pred CCCcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCH
Q psy17455 3 EGSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKF 81 (149)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~ 81 (149)
++...+..+.|+..+++.+++++.++.+|||+ .++|+.|+|||.|||++|+| |+++|... ...|.++++++
T Consensus 4 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~-----F~~~f~~~---~~~i~l~~~~~ 75 (116)
T 3fkc_A 4 RKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTY-----FHQLFSVA---GQVVELSFIRA 75 (116)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHH-----HHHHTTSC---CSEEEECSSCH
T ss_pred CceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHH-----HHHHHcCC---CCEEEeCCCCH
Confidence 45667778888999999999999999999999 99999999999999999999 99999764 67899999999
Q ss_pred HHHHHHhhhhcCCcc-cCChhhHHHHHHHHhhcCccchhhh
Q psy17455 82 NELKSMIDYMYKGEV-NIAPDELNHFLKAAERLQIRGLSES 121 (149)
Q Consensus 82 ~~~~~ll~f~Ytg~~-~i~~~~~~~ll~~A~~l~i~~L~~~ 121 (149)
++|+.+|+|+|||++ .++.+++.+++.+|++|++++|+++
T Consensus 76 ~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~l 116 (116)
T 3fkc_A 76 EIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAAL 116 (116)
T ss_dssp HHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHTC
T ss_pred HHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCcC
Confidence 999999999999999 7999999999999999999999863
No 14
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.94 E-value=2.5e-27 Score=182.09 Aligned_cols=137 Identities=12% Similarity=0.200 Sum_probs=117.0
Q ss_pred CcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC----CCCCCeEEeCCC
Q psy17455 5 SQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH----NDERPILIFSET 79 (149)
Q Consensus 5 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~----~~~~~~i~l~~~ 79 (149)
+..+..+.|+..+++.+++++.++.+|||+ .++|+.|+|||.||+++|+| |++||.+. +.....|.++++
T Consensus 6 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~y-----F~~mf~~~~~~~e~~~~~i~l~~v 80 (256)
T 3hve_A 6 GSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPY-----IRTKLNYNPPKDDGSTYKIELEGI 80 (256)
T ss_dssp ----CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHH-----HHHTC-----------CEEECSSC
T ss_pred CCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHH-----HHHHhCCCCCcccCCCCeEEeCCC
Confidence 466788889999999999999999999999 99999999999999999999 99999752 456789999999
Q ss_pred CHHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCC
Q psy17455 80 KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQ 146 (149)
Q Consensus 80 ~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (149)
++++|+.+++|+|||++.++.+++.+++.+|++|+++.|++.|...+...+.++++......|...+
T Consensus 81 ~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~ 147 (256)
T 3hve_A 81 SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYC 147 (256)
T ss_dssp CHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTT
T ss_pred CHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999988777665443
No 15
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.93 E-value=1e-26 Score=180.87 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=121.5
Q ss_pred CcceeecccHHHHHHHHHHHHhCCCcceEE-EeC---CeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeC-
Q psy17455 5 SQEFCLRANQETMISLVNSLLKKETLVDLR-SAE---GQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFS- 77 (149)
Q Consensus 5 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~---g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~- 77 (149)
...|..+.|++.+++.+++++.++.+|||+ .++ |+.|+|||.||+++|+| |++||.+ .+.....|.++
T Consensus 7 ~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~y-----F~~mf~~~~~e~~~~~i~l~~ 81 (279)
T 3i3n_A 7 AEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEY-----FTPLLSGQFSESRSGRVEMRK 81 (279)
T ss_dssp EEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTT-----SGGGCCC--------EEECCC
T ss_pred ccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHH-----HHHHhcCCCccccCCeEEecc
Confidence 466888899999999999999999999999 998 89999999999999999 9999976 45667899998
Q ss_pred -----CCCHHHHHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCC
Q psy17455 78 -----ETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQ 146 (149)
Q Consensus 78 -----~~~~~~~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (149)
++++++|+.+++|+|||++.++.+++.+++.+|++|+++.|++.|...+...+.++++......|...+
T Consensus 82 ~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~ 155 (279)
T 3i3n_A 82 WSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYT 155 (279)
T ss_dssp CSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTT
T ss_pred ccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999999999999999999999998877665443
No 16
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.93 E-value=2.5e-27 Score=167.27 Aligned_cols=129 Identities=17% Similarity=0.263 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC--CCCCCeEEeCCCCHHHHHHHhhh
Q psy17455 14 QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--NDERPILIFSETKFNELKSMIDY 90 (149)
Q Consensus 14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~--~~~~~~i~l~~~~~~~~~~ll~f 90 (149)
++.+.+.++++++++.+|||+ .++|+.|+|||.||+++|+| |+++|.+. +.....|.++++++++|+.+|+|
T Consensus 9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~-----F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~ 83 (145)
T 4eoz_A 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPV-----FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 83 (145)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHH-----HHHHHcCCCcCCCCceEEecCCCHHHHHHHHHh
Confidence 577999999999999999999 99999999999999999999 99999753 34457999999999999999999
Q ss_pred hcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCCC
Q psy17455 91 MYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQM 147 (149)
Q Consensus 91 ~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (149)
+|||++.++.+++.+++.+|++|++++|++.|...+...+.++++.+....|...+.
T Consensus 84 ~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~ 140 (145)
T 4eoz_A 84 IYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSA 140 (145)
T ss_dssp HHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC----------------------
T ss_pred hccCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 999999999999999999999999999999999999999999999998888776654
No 17
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.2e-26 Score=167.99 Aligned_cols=129 Identities=17% Similarity=0.263 Sum_probs=119.5
Q ss_pred cHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHHHHHhh
Q psy17455 13 NQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNELKSMID 89 (149)
Q Consensus 13 ~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~ll~ 89 (149)
+++.+.+.++++++++.+|||+ .++|+.|+|||.||+++|+| |+++|.. .+.....|.++++++++|+.+|+
T Consensus 17 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~-----F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~ 91 (172)
T 3htm_A 17 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPV-----FSAMFEHEMEESKKNRVEINDVEPEVFKEMMC 91 (172)
T ss_dssp CCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHHHSCCCGGGTTEEEECSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHH-----HHHHHccCccccCCCeEEecCCCHHHHHHHHH
Confidence 3677999999999999999999 99999999999999999999 9999975 45567899999999999999999
Q ss_pred hhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCC
Q psy17455 90 YMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQ 146 (149)
Q Consensus 90 f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (149)
|+|||++.++.+++.+++.+|++|+++.|++.|...+...+.++++.+....|...+
T Consensus 92 ~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~ 148 (172)
T 3htm_A 92 FIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHS 148 (172)
T ss_dssp HHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTT
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998877766554
No 18
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.93 E-value=2.4e-26 Score=158.85 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=96.7
Q ss_pred CcceeecccHHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHH
Q psy17455 5 SQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNE 83 (149)
Q Consensus 5 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~ 83 (149)
......+.++..+++.++ |.++.||||+ .++|+.|+|||+|||++|+| |++ ....|.++++++++
T Consensus 7 p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~y-----F~~-------~~~~i~l~~v~~~~ 72 (119)
T 3m5b_A 7 PIRLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQ-----LGR-------RGQWALGEGISPST 72 (119)
T ss_dssp CEEECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGG-----GCC-------CEEEECCSSCCHHH
T ss_pred CCCCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHH-----Hhc-------CCCEEEeCCCCHHH
Confidence 344455567788888886 7789999999 99999999999999999999 753 34688999999999
Q ss_pred HHHHhhhhcCCcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455 84 LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA 128 (149)
Q Consensus 84 ~~~ll~f~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~ 128 (149)
|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++....
T Consensus 73 f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 73 FAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999987543
No 19
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.91 E-value=1.2e-25 Score=151.92 Aligned_cols=99 Identities=19% Similarity=0.307 Sum_probs=89.7
Q ss_pred HHhCCCcceEE-EeCC----eEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHHHHHhhhhcCCcc
Q psy17455 24 LLKKETLVDLR-SAEG----QYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNELKSMIDYMYKGEV 96 (149)
Q Consensus 24 l~~~~~~~Dv~-~~~g----~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~ 96 (149)
+++++.+|||+ .++| +.|+|||.||+++|+| |+++|.+ .+.. ..|.++++++++|+.+|+|+|||++
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~-----F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~ 75 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSV-----FYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEI 75 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHH-----HHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHH-----HHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCc
Confidence 57899999999 9988 8999999999999999 9999986 3344 8999999999999999999999999
Q ss_pred cCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455 97 NIAPDELNHFLKAAERLQIRGLSESESTTQTA 128 (149)
Q Consensus 97 ~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~ 128 (149)
.++.+++.+++.+|++|+++.|++.|.+.+..
T Consensus 76 ~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~ 107 (109)
T 2vkp_A 76 DLEADTVLATLYAAKKYIVPALAKACVNFLET 107 (109)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999987654
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.90 E-value=6.1e-24 Score=167.28 Aligned_cols=129 Identities=17% Similarity=0.263 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCCCcceEE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHHHHHhhh
Q psy17455 14 QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNELKSMIDY 90 (149)
Q Consensus 14 ~~~l~~~l~~l~~~~~~~Dv~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~ll~f 90 (149)
++.+.+.+.+++.++.+|||+ .++|+.|+|||.|||++|+| |+++|.+ .+....+|.++++++++|+.+|+|
T Consensus 158 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~-----F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~ 232 (312)
T 3hqi_A 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPV-----FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 232 (312)
T ss_dssp CCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHH-----HHHHTTC-----CCSEEEECSSCHHHHHHHHHH
T ss_pred CchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHH-----HHHHhccCccccCCceEEecCCCHHHHHHHHHh
Confidence 457889999999999999999 99999999999999999999 9999975 466778999999999999999999
Q ss_pred hcCCcccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhhhhhccCCCC
Q psy17455 91 MYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGTSQM 147 (149)
Q Consensus 91 ~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (149)
+|||++.+..+++.+++.+|++|++++|++.|+..+...++++++......|...+.
T Consensus 233 iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~ 289 (312)
T 3hqi_A 233 IYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSA 289 (312)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTC
T ss_pred hcCCCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999888877765543
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.52 E-value=6.2e-15 Score=106.19 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=80.4
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCC-C---CCCCCeEEeCCCCHHHHHHHhhhhcCCc---------------
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ-H---NDERPILIFSETKFNELKSMIDYMYKGE--------------- 95 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~-~---~~~~~~i~l~~~~~~~~~~ll~f~Ytg~--------------- 95 (149)
+.+|+.|.+||.| |++|+| |+.||.. . +.....|.|++|++.+++.+++|+|++.
T Consensus 7 ssDg~~f~v~~~v-A~~S~~-----i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~ 80 (159)
T 2ast_A 7 SSDGEIFEVDVEI-AKQSVT-----IKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKR 80 (159)
T ss_dssp CTTSCEEEEEHHH-HHTCHH-----HHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------
T ss_pred cCCCCEEEeCHHH-HHHhHH-----HHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccc
Confidence 4589999999999 999999 9999975 2 4455789999999999999999999988
Q ss_pred -----------ccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhh
Q psy17455 96 -----------VNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEE 137 (149)
Q Consensus 96 -----------~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~ 137 (149)
+.++.+++.+|+.||++|+|++|.++|...+...+...+.++
T Consensus 81 ~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~ee 133 (159)
T 2ast_A 81 TDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE 133 (159)
T ss_dssp CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHH
T ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH
Confidence 788999999999999999999999999987755444444333
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.37 E-value=5.6e-13 Score=88.46 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=64.1
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCC----CCCCCCeEEeCCCCHHHHHHHhhhhc-----C---Cccc---CC
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ----HNDERPILIFSETKFNELKSMIDYMY-----K---GEVN---IA 99 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~ll~f~Y-----t---g~~~---i~ 99 (149)
..||++|.+||.| |++|++ |+.||.. .+.....|.|+++++.+++.+++|+| + +.+. ++
T Consensus 8 SsDg~~F~v~r~v-A~~S~~-----ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~ 81 (97)
T 4ajy_C 8 SSDGHEFIVKREH-ALTSGT-----IKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 81 (97)
T ss_dssp CTTCCEEEEEHHH-HTTSHH-----HHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCC
T ss_pred ecCCcEEEecHHH-HHHhHH-----HHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCC
Confidence 5689999999999 999999 9999975 23457799999999999999999999 5 6776 89
Q ss_pred hhhHHHHHHHHhhcCc
Q psy17455 100 PDELNHFLKAAERLQI 115 (149)
Q Consensus 100 ~~~~~~ll~~A~~l~i 115 (149)
.+++.+|+.||++|+.
T Consensus 82 ~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 82 PEIALELLMAANFLDC 97 (97)
T ss_dssp GGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhCC
Confidence 9999999999999874
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.28 E-value=1.5e-12 Score=92.04 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=81.6
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCc-------------------
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGE------------------- 95 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~------------------- 95 (149)
..+|+.|.+|+.+ |.+|.+ ++.||.... ...|.+++|+..+++.+++|+|...
T Consensus 8 SsDg~~f~v~~~v-A~~S~~-----ik~ml~~~~--~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i 79 (141)
T 1fs1_B 8 SSDGEIFEVDVEI-AKQSVT-----IKTMLEDLG--MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDI 79 (141)
T ss_dssp CTTSCEEEEEGGG-GGTCHH-----HHHHHHHTC--CSSEECTTCCHHHHHHHHHHHHHHTTCC----------------
T ss_pred eCCCCEEEecHHH-HHHhHH-----HHHHHHhcC--CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhh
Confidence 4589999999998 899999 999986422 5589999999999999999999865
Q ss_pred -------ccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhhh
Q psy17455 96 -------VNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEED 138 (149)
Q Consensus 96 -------~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~~ 138 (149)
+.++.+++.+|+.||++|+|++|.++|...+-..+.-...+++
T Consensus 80 ~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eei 129 (141)
T 1fs1_B 80 PVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI 129 (141)
T ss_dssp -HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 6788899999999999999999999999887666655555443
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.17 E-value=5.3e-12 Score=90.90 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=52.3
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcCCc-------------------
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGE------------------- 95 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~------------------- 95 (149)
..+|+.|.+|+.+ |.+|.+ ++.||... .....|.|++|+..+++.|++|+|+..
T Consensus 10 SsDg~~f~v~~~v-A~~S~~-----ik~ml~~~-~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~ 82 (160)
T 2p1m_A 10 SSDGESFEVEEAV-ALESQT-----IAHMVEDD-CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDD 82 (160)
T ss_dssp C---------CHH-HHTCTT-----TC-------------CCTTSCHHHHHHHHHC------------------------
T ss_pred cCCCCEEEECHHH-HHHhHH-----HHHHHHcc-CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccch
Confidence 4589999999998 889999 88887642 234579999999999999999999976
Q ss_pred --------ccCChhhHHHHHHHHhhcCccchhhhhhhccccCCCCCchhh
Q psy17455 96 --------VNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEE 137 (149)
Q Consensus 96 --------~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~~~~~~~~~ 137 (149)
+.++.+++.+|+.||++|+|++|.++|...+...+.-...++
T Consensus 83 i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~ee 132 (160)
T 2p1m_A 83 LKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEE 132 (160)
T ss_dssp ------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH
Confidence 357778899999999999999999999988877664433333
No 25
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.71 E-value=6.6e-09 Score=68.61 Aligned_cols=75 Identities=23% Similarity=0.226 Sum_probs=61.8
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCC----CCCCCCeEEeCCCCHHHHHHHhhhhcCCc-----------ccCC
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ----HNDERPILIFSETKFNELKSMIDYMYKGE-----------VNIA 99 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~----~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~-----------~~i~ 99 (149)
..+|+.|.+++.+ |..|.+ ++.|+.. .+.....|.|++++..+++.+++|+|... ..++
T Consensus 7 SsDg~~f~V~~~~-A~~S~~-----ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd 80 (96)
T 2fnj_C 7 SSDGHEFIVKREH-ALTSGT-----IKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 80 (96)
T ss_dssp CTTSCEEEEEHHH-HTTSHH-----HHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCC
T ss_pred ecCCCEEEeCHHH-HHHhHH-----HHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccC
Confidence 4589999999997 889999 9999864 23445789999999999999999998743 3678
Q ss_pred hhhHHHHHHHHhhcCc
Q psy17455 100 PDELNHFLKAAERLQI 115 (149)
Q Consensus 100 ~~~~~~ll~~A~~l~i 115 (149)
.+.+.+|+.||++|+|
T Consensus 81 ~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 81 PEIALELLMAANFLDC 96 (96)
T ss_dssp TTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999975
No 26
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.69 E-value=1.8e-08 Score=66.86 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=63.8
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCC-CCCCCCeEEeCCCCHHHHHHHhhhhcCCc--------------ccCC
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ-HNDERPILIFSETKFNELKSMIDYMYKGE--------------VNIA 99 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~-~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~--------------~~i~ 99 (149)
..+|+.|.+++.+ |..|.+ ++.|+.. .+.....|.|++++..+++.+++|+|... ..++
T Consensus 10 SsDg~~f~V~~~v-A~~S~~-----ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd 83 (99)
T 1hv2_A 10 SKDDKEYEISRSA-AMISPT-----LKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP 83 (99)
T ss_dssp ETTTEEEEEEHHH-HTTCHH-----HHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred ecCCCEEEECHHH-HHHhHH-----HHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCC
Confidence 5699999999997 889999 9999864 23344789999999999999999998743 3577
Q ss_pred hhhHHHHHHHHhhcCc
Q psy17455 100 PDELNHFLKAAERLQI 115 (149)
Q Consensus 100 ~~~~~~ll~~A~~l~i 115 (149)
.+.+.+|+.||++|+|
T Consensus 84 ~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 84 TEMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999986
No 27
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.63 E-value=2.9e-08 Score=71.91 Aligned_cols=86 Identities=17% Similarity=0.299 Sum_probs=70.2
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCC------CCCCeEEeCCCCHHHHHHHhhhhcCCc-------------
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHN------DERPILIFSETKFNELKSMIDYMYKGE------------- 95 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~------~~~~~i~l~~~~~~~~~~ll~f~Ytg~------------- 95 (149)
+.+|+.|.+++.+ |..|.. ++.|+.... .....|.|++|+..+|+.|++|+|...
T Consensus 13 SsDG~~F~V~~~v-A~~S~t-----Ik~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 13 SGEGERFTVDKKI-AERSLL-----LKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp CTTCCEEEEEHHH-HTTSHH-----HHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eCCCCEEEecHHH-HHHhHH-----HHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 5689999999998 778999 999986421 233789999999999999999996532
Q ss_pred ------------ccCChhhHHHHHHHHhhcCccchhhhhhhcc
Q psy17455 96 ------------VNIAPDELNHFLKAAERLQIRGLSESESTTQ 126 (149)
Q Consensus 96 ------------~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~ 126 (149)
+.++.+.+.+|+.||++|+|++|.++|...+
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~v 129 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVV 129 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 2466678999999999999999999988765
No 28
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.39 E-value=5.6e-07 Score=60.32 Aligned_cols=92 Identities=17% Similarity=0.266 Sum_probs=71.3
Q ss_pred CcceEE--EeCCeEEEeeeeeecccCC-CCChHHHHHhcCCC------CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCC
Q psy17455 29 TLVDLR--SAEGQYLKAHKVVLCTCSP-VFEIPLFEMLLSQH------NDERPILIFSETKFNELKSMIDYMYKGEVNIA 99 (149)
Q Consensus 29 ~~~Dv~--~~~g~~~~aHk~vLaa~S~-~~~~~~f~~~f~~~------~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~ 99 (149)
.-++++ -|||+.|...+..|+...+ + |..||... .....++-+ +-+|..|+.||+|+.+|++.++
T Consensus 3 ~~~~~v~LNVGG~~f~t~~~TL~~~p~s~-----L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p 76 (107)
T 3drz_A 3 SVSKWVRLNVGGTYFLTTRQTLCRDPKSF-----LYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVIN 76 (107)
T ss_dssp --CCEEEEEETTEEEEEEHHHHTSSTTSH-----HHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCC
T ss_pred CCCCEEEEEECCEEEEECHHHHhcCCCcc-----hhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCC
Confidence 334555 8999999999999998864 5 67777542 123345555 6899999999999999999876
Q ss_pred hhh-HHHHHHHHhhcCccchhhhhhhcc
Q psy17455 100 PDE-LNHFLKAAERLQIRGLSESESTTQ 126 (149)
Q Consensus 100 ~~~-~~~ll~~A~~l~i~~L~~~~~~~~ 126 (149)
.+. ...++.-|.+|+|+.|++.|.+-+
T Consensus 77 ~~~~~~~l~~Ea~fy~l~~L~~~l~~~i 104 (107)
T 3drz_A 77 KDLAEEGVLEEAEFYNITSLIKLVKDKI 104 (107)
T ss_dssp TTSCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 643 477999999999999999988643
No 29
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.29 E-value=5.3e-07 Score=61.03 Aligned_cols=75 Identities=23% Similarity=0.225 Sum_probs=61.4
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC----CCCCCeEEeCCCCHHHHHHHhhhhcCCc-----------ccCC
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH----NDERPILIFSETKFNELKSMIDYMYKGE-----------VNIA 99 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~----~~~~~~i~l~~~~~~~~~~ll~f~Ytg~-----------~~i~ 99 (149)
..+|..|.+++. .|..|.. ++.|+... +.....|.|++|+..+++.+++|+|... ..++
T Consensus 23 SsDG~~F~V~~~-~A~~S~t-----Ik~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd 96 (112)
T 1vcb_B 23 SSDGHEFIVKRE-HALTSGT-----IKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 96 (112)
T ss_dssp CTTSCEEEEEHH-HHHTSHH-----HHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred cCCCCEEEECHH-HHHHhHH-----HHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence 578999999999 5778999 99999742 3334689999999999999999997633 3678
Q ss_pred hhhHHHHHHHHhhcCc
Q psy17455 100 PDELNHFLKAAERLQI 115 (149)
Q Consensus 100 ~~~~~~ll~~A~~l~i 115 (149)
.+.+.+|+.||++|+|
T Consensus 97 ~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 97 PEIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999986
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.60 E-value=0.0001 Score=54.56 Aligned_cols=94 Identities=17% Similarity=0.250 Sum_probs=72.6
Q ss_pred CCCcceEE--EeCCeEEEeeeeeecccCC-CCChHHHHHhcCCCC------CCCCeEEeCCCCHHHHHHHhhhhcCCccc
Q psy17455 27 KETLVDLR--SAEGQYLKAHKVVLCTCSP-VFEIPLFEMLLSQHN------DERPILIFSETKFNELKSMIDYMYKGEVN 97 (149)
Q Consensus 27 ~~~~~Dv~--~~~g~~~~aHk~vLaa~S~-~~~~~~f~~~f~~~~------~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~ 97 (149)
.|...+++ -|||+.|...+..|..... + |..||.... ....++-| |-+|..|+.||+|+-+|++.
T Consensus 7 ~g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~-----L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~ 80 (202)
T 3drx_A 7 PGSVSKWVRLNVGGTYFLTTRQTLCRDPKSF-----LYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV 80 (202)
T ss_dssp SSCCCCEEEEEETTEEEEEETTGGGSCTTSS-----THHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCC
T ss_pred CCCCCCEEEEEECCEEEEEeHHHHhCCCcch-----HHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccC
Confidence 45667777 8999999999999998764 5 666665321 12344544 57899999999999999998
Q ss_pred CChhh-HHHHHHHHhhcCccchhhhhhhcc
Q psy17455 98 IAPDE-LNHFLKAAERLQIRGLSESESTTQ 126 (149)
Q Consensus 98 i~~~~-~~~ll~~A~~l~i~~L~~~~~~~~ 126 (149)
++.+. ...++.-|.+|+|..|.+.|.+.+
T Consensus 81 lP~~~~~~~l~eEA~FygL~~Lv~~l~~~i 110 (202)
T 3drx_A 81 INKDLAEEGVLEEAEFYNITSLIKLVKDKI 110 (202)
T ss_dssp CCTTSCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 86653 467999999999999999887543
No 31
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=96.36 E-value=0.0042 Score=41.81 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=60.6
Q ss_pred EeCCeEEEeeeeeecccCCCCChHHHHHhcCCC---CCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChh-hHHHHHHHH
Q psy17455 35 SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH---NDERPILIFSETKFNELKSMIDYMYKGEVNIAPD-ELNHFLKAA 110 (149)
Q Consensus 35 ~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~---~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~-~~~~ll~~A 110 (149)
-|||+.|...+..|......+ +..++... .....++-+ +-+|..|+.||+|+-+|++.++.+ .+..++.-|
T Consensus 10 NVGG~~f~T~~~TL~~~P~s~----L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea 84 (115)
T 3kvt_A 10 NVGGIRHETYKATLKKIPATR----LSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL 84 (115)
T ss_dssp EETTEEEEEEHHHHTTSCSST----TTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred EECCEEEEecHHHHhcCCCcc----HHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence 899999999999998775441 34444421 123445555 578999999999999999987764 467899999
Q ss_pred hhcCccchh
Q psy17455 111 ERLQIRGLS 119 (149)
Q Consensus 111 ~~l~i~~L~ 119 (149)
.+|+|+...
T Consensus 85 ~fy~i~~~~ 93 (115)
T 3kvt_A 85 EFWGLDSNQ 93 (115)
T ss_dssp HHHTCCGGG
T ss_pred HHhCCChHH
Confidence 999998864
No 32
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=96.33 E-value=0.011 Score=40.29 Aligned_cols=83 Identities=11% Similarity=0.183 Sum_probs=61.0
Q ss_pred ceEE--EeCCeEEEeeeeeecccCCCCChHHHHHhcCC------CCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChh-
Q psy17455 31 VDLR--SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ------HNDERPILIFSETKFNELKSMIDYMYKGEVNIAPD- 101 (149)
Q Consensus 31 ~Dv~--~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~------~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~- 101 (149)
.+++ -|||+.|..-+..|...... +|.. ......++-+ +-++..|+.||+|+-+|++.++.+
T Consensus 12 ~~~V~LNVGG~~F~t~~~TL~~~p~S--------~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~ 82 (124)
T 1s1g_A 12 DELIVLNVSGRRFQTWRTTLERYPDT--------LLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYE 82 (124)
T ss_dssp CCEEEEEETTEEEEEEHHHHTTSTTS--------STTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTS
T ss_pred CCEEEEEeCCEEEEEeHHHHhcCCCc--------eecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCc
Confidence 4555 89999999999999875443 1221 1123344544 569999999999999999987665
Q ss_pred hHHHHHHHHhhcCccchh-hhh
Q psy17455 102 ELNHFLKAAERLQIRGLS-ESE 122 (149)
Q Consensus 102 ~~~~ll~~A~~l~i~~L~-~~~ 122 (149)
.+..++.-|++|+|..+. +.|
T Consensus 83 ~~~~l~~Ea~fy~i~~l~l~~c 104 (124)
T 1s1g_A 83 CISAYDDELAFYGILPEIIGDC 104 (124)
T ss_dssp CHHHHHHHHHHTTCCGGGBCHH
T ss_pred CHHHHHHHHHHcCCChHHHHHH
Confidence 478899999999999884 444
No 33
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=95.78 E-value=0.021 Score=39.67 Aligned_cols=84 Identities=11% Similarity=0.174 Sum_probs=61.8
Q ss_pred cceEE--EeCCeEEEeeeeeecccCCCCChHHHHHhcCC------CCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChh
Q psy17455 30 LVDLR--SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ------HNDERPILIFSETKFNELKSMIDYMYKGEVNIAPD 101 (149)
Q Consensus 30 ~~Dv~--~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~------~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~ 101 (149)
..+++ -|||+.|...+..|...... +|.. ......++-+ +-++..|+.||+|+-+|++.++.+
T Consensus 33 ~~~~V~LNVGG~~F~T~~~TL~~~P~S--------~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~ 103 (140)
T 2nz0_B 33 QDELIVLNVSGRRFQTWRTTLERYPDT--------LLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRY 103 (140)
T ss_dssp CCCEEEEEETTEEEEEEHHHHHTCTTS--------TTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTT
T ss_pred CCCEEEEEECCEEEEeeHHHHhcCCCe--------eecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCC
Confidence 34555 89999999999999875443 2221 0123445555 569999999999999999987654
Q ss_pred -hHHHHHHHHhhcCccchh-hhh
Q psy17455 102 -ELNHFLKAAERLQIRGLS-ESE 122 (149)
Q Consensus 102 -~~~~ll~~A~~l~i~~L~-~~~ 122 (149)
.+..++.-|++|+|+.+. +.|
T Consensus 104 ~~~~~l~eEa~fy~i~~l~l~~C 126 (140)
T 2nz0_B 104 ECISAYDDELAFYGILPEIIGDC 126 (140)
T ss_dssp SCHHHHHHHHHHHTCCGGGBCTT
T ss_pred cCHHHHHHHHHHcCCChHHHHHH
Confidence 478899999999999883 444
No 34
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=95.70 E-value=0.018 Score=37.71 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=60.9
Q ss_pred EE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcC-CcccCChh-hHHHHHHH
Q psy17455 33 LR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYK-GEVNIAPD-ELNHFLKA 109 (149)
Q Consensus 33 v~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Yt-g~~~i~~~-~~~~ll~~ 109 (149)
|+ -|||+.|...+..|+..-..+....+...- .......++-+ +-++..|+.||+|+-+ |++.++++ .+..++.-
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~-~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~E 80 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNR-YYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE 80 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGG-GEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhcccc-ccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHH
Confidence 44 799999999999997664432222222110 01123455555 5689999999999998 89877654 36789999
Q ss_pred HhhcCccchh-hhhh
Q psy17455 110 AERLQIRGLS-ESES 123 (149)
Q Consensus 110 A~~l~i~~L~-~~~~ 123 (149)
|.+|+|..+. +.|.
T Consensus 81 a~fy~i~~~~~~~~~ 95 (100)
T 1t1d_A 81 IKFYELGENAFERYR 95 (100)
T ss_dssp HHHTTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHH
Confidence 9999998864 4443
No 35
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=95.27 E-value=0.013 Score=38.68 Aligned_cols=82 Identities=6% Similarity=0.127 Sum_probs=57.9
Q ss_pred EE-EeCCeEEEeeeeeecccCCCCChHHHHHhcCC--CCCCCCeEEeCCCCHHHHHHHhhhhcCCcccCChh-hHHHHHH
Q psy17455 33 LR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQ--HNDERPILIFSETKFNELKSMIDYMYKGEVNIAPD-ELNHFLK 108 (149)
Q Consensus 33 v~-~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~--~~~~~~~i~l~~~~~~~~~~ll~f~Ytg~~~i~~~-~~~~ll~ 108 (149)
|+ -|||+.|...+..|......+ +...-.. ......++-+ +-++..|+.||+|+-+|++.++++ .+..++.
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s~----L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~ 76 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDTL----LGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDE 76 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSS----TTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCcc----ccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 45 789999999999888764430 1110000 0112344554 468999999999999999987654 3788999
Q ss_pred HHhhcCccchh
Q psy17455 109 AAERLQIRGLS 119 (149)
Q Consensus 109 ~A~~l~i~~L~ 119 (149)
-|++|+|+.+.
T Consensus 77 Ea~fy~i~~l~ 87 (105)
T 1nn7_A 77 ELAFFGLIPEI 87 (105)
T ss_dssp HHHHHTCCSCC
T ss_pred HHHHcCCCHHH
Confidence 99999999873
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=87.61 E-value=1.2 Score=37.04 Aligned_cols=90 Identities=9% Similarity=0.093 Sum_probs=61.6
Q ss_pred CCcceEE--EeCCeEEEeeeeeecccCCCCChHHHHHhcCCCCCCCCeEEeCCCCHHHHHHHhhhhcC-CcccCChh-hH
Q psy17455 28 ETLVDLR--SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYK-GEVNIAPD-EL 103 (149)
Q Consensus 28 ~~~~Dv~--~~~g~~~~aHk~vLaa~S~~~~~~~f~~~f~~~~~~~~~i~l~~~~~~~~~~ll~f~Yt-g~~~i~~~-~~ 103 (149)
...++.+ -|||+.|...+..|.....-+....++..- .......++-+ |-++..|+.+|.|+.+ |++..+.+ ..
T Consensus 48 ~~~~~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~-~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~ 125 (514)
T 2r9r_B 48 HESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMR-YFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPL 125 (514)
T ss_dssp ---CCEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGG-GEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCH
T ss_pred CCCCCEEEEEeCCEEEEecHHHHhcCCCCcccccccCCc-ccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccH
Confidence 3456666 899999999999998765542222232211 01123445555 6799999999999999 99887655 35
Q ss_pred HHHHHHHhhcCccchh
Q psy17455 104 NHFLKAAERLQIRGLS 119 (149)
Q Consensus 104 ~~ll~~A~~l~i~~L~ 119 (149)
..+.+-|++|++..+.
T Consensus 126 ~~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 126 DIFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHhcCCCHHH
Confidence 6688899999998764
No 37
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.95 E-value=1.9 Score=27.73 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=29.7
Q ss_pred CcccCChhhHHHHHHHHhhcCccchhhhhhhcccc
Q psy17455 94 GEVNIAPDELNHFLKAAERLQIRGLSESESTTQTA 128 (149)
Q Consensus 94 g~~~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~ 128 (149)
+.-.++++|+..++..|+.|+++.|.+.|..+...
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~ 38 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKT 38 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44568899999999999999999999988776544
No 38
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=54.06 E-value=7.4 Score=26.44 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=28.5
Q ss_pred cCChhhHHHHHHHHhhcCccchhhhhhhccccC
Q psy17455 97 NIAPDELNHFLKAAERLQIRGLSESESTTQTAV 129 (149)
Q Consensus 97 ~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~ 129 (149)
.++.+++..++..|..|+++.|++.|...+..+
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~ 163 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQLKTQAVDFINYH 163 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 367789999999999999999999998876553
No 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=41.78 E-value=14 Score=27.91 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=28.6
Q ss_pred cCChhhHHHHHHHHhhcCccchhhhhhhccccC
Q psy17455 97 NIAPDELNHFLKAAERLQIRGLSESESTTQTAV 129 (149)
Q Consensus 97 ~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~~~ 129 (149)
.++.+++..++.+|+.|+++.|++.|-..+..+
T Consensus 271 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 303 (312)
T 3hqi_A 271 NLSVENAAEILILADLHSADQLKTQAVDFINYH 303 (312)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357789999999999999999999998877654
No 40
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=28.13 E-value=20 Score=17.20 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=11.5
Q ss_pred hhHHHHHHHHhhcC
Q psy17455 101 DELNHFLKAAERLQ 114 (149)
Q Consensus 101 ~~~~~ll~~A~~l~ 114 (149)
.+++.|++||.++.
T Consensus 3 ~nvq~LLeAAeyLE 16 (26)
T 1pd7_B 3 MNIQMLLEAADYLE 16 (26)
T ss_dssp CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 36788999999875
No 41
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=26.28 E-value=37 Score=25.00 Aligned_cols=31 Identities=6% Similarity=-0.009 Sum_probs=26.5
Q ss_pred cCChhhHHHHHHHHhhcCccchhhhhhhccc
Q psy17455 97 NIAPDELNHFLKAAERLQIRGLSESESTTQT 127 (149)
Q Consensus 97 ~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~ 127 (149)
.++.+++..++..|..|+++.|.+.|...+.
T Consensus 138 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~ 168 (279)
T 3i3n_A 138 KLHLSNCVAIHSLAHMYTLSQLALKAADMIR 168 (279)
T ss_dssp HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 4678899999999999999999998876543
No 42
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=25.29 E-value=30 Score=25.12 Aligned_cols=31 Identities=10% Similarity=-0.060 Sum_probs=26.1
Q ss_pred cCChhhHHHHHHHHhhcCccchhhhhhhccc
Q psy17455 97 NIAPDELNHFLKAAERLQIRGLSESESTTQT 127 (149)
Q Consensus 97 ~i~~~~~~~ll~~A~~l~i~~L~~~~~~~~~ 127 (149)
.++.+|+..++..|..|+++.|.+.|.....
T Consensus 130 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~ 160 (256)
T 3hve_A 130 CIAAENCIGIRDFALHYCLHHVHYLATEYLE 160 (256)
T ss_dssp TCCSSTTHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCHhhHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3577799999999999999999998876543
No 43
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=21.75 E-value=40 Score=24.41 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.4
Q ss_pred HHHHHHhhhhcCCc
Q psy17455 82 NELKSMIDYMYKGE 95 (149)
Q Consensus 82 ~~~~~ll~f~Ytg~ 95 (149)
.....+|+|||+|+
T Consensus 186 ~~~~~vl~f~~~G~ 199 (200)
T 4h63_H 186 QMLTDILSFMKSGK 199 (200)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhcCC
Confidence 34578999999995
Done!