RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17455
(149 letters)
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 59.9 bits (146), Expect = 7e-13
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 23 SLLKKETLVD-----LRSAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFS 77
S+ E + D + + AHK VL S VF M + + +
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFY----AMFYGDLAEVKSEIHIP 56
Query: 78 ETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL 118
+ + ++ YMY E+++ D + L AA++ + L
Sbjct: 57 DVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPAL 97
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 59.5 bits (145), Expect = 2e-12
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--NDERPILIFSE 78
L + D GQ +AHK +L SPVF M + + + + I ++
Sbjct: 17 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS----AMFEHEMEESKKNRVEI-ND 71
Query: 79 TKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL 118
+ K M+ ++Y G+ + L AA++ + L
Sbjct: 72 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 111
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 58.8 bits (143), Expect = 8e-12
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQH--NDERPILIFSE 78
L + D GQ +AHK +L SPVF M + + + + I ++
Sbjct: 26 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS----AMFEHEMEESKKNRVEI-ND 80
Query: 79 TKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL 118
+ K M+ ++Y G+ + L AA++ + L
Sbjct: 81 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 120
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 57.3 bits (139), Expect = 1e-11
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
N + L D +G + KAHK VL CS F+ML D + I +
Sbjct: 19 NQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSE-----YFKMLFVDQKDVVHLDISNAAG 73
Query: 81 FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
++ +++MY +++++P+ ++ L A LQ++ +
Sbjct: 74 LGQV---LEFMYTAKLSLSPENVDDVLAVATFLQMQDIIT 110
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 56.1 bits (136), Expect = 3e-11
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
N +K D G KAH VL CS F+ + +
Sbjct: 16 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ----SLYGDGSGGSVVLPAGFAEI 71
Query: 81 FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQI 115
F L +D+ Y G + + + L AA L++
Sbjct: 72 FGLL---LDFFYTGHLALTSGNRDQVLLAARELRV 103
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 56.5 bits (137), Expect = 3e-11
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
N +K D G KAH VL CS F+ + +
Sbjct: 17 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ----RIYGDGTGGSVVLPAGFAEI 72
Query: 81 FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQI 115
F L +D+ Y G + + + L AA+ L++
Sbjct: 73 FGLL---LDFFYTGHLALTSGNRDQVLLAAKELRV 104
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 55.7 bits (135), Expect = 4e-11
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
N + L D KAH+ VL + S F + ++ L S+ K
Sbjct: 14 NKQREAGFLCDCTIVIGEFQFKAHRNVLASFSE-----YFGAIYRSTSENNVFLDQSQVK 68
Query: 81 FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQI 115
+ + +++++Y G +N+ + +AA+ L++
Sbjct: 69 ADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKV 103
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 55.7 bits (135), Expect = 4e-11
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 4 GSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEM 62
G + ++ ++ N + TL D+ + Q AH+ VL S +FE+
Sbjct: 2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSK-----MFEI 56
Query: 63 LLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
L +++ + S F ++ ++Y Y + ++L+ L AAE L+I L E
Sbjct: 57 LFHRNSQHYTLDFLSPKTFQQI---LEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE 111
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 55.3 bits (134), Expect = 7e-11
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
N KK+ L D+ E + +AH+ VL CS F + L+ Q ++ + + E
Sbjct: 24 NDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFW----QALVGQTKNDLVVSLPEEVT 79
Query: 81 FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQI 115
++ + Y ++ ++ + + ++ AE L++
Sbjct: 80 ARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRM 114
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 54.9 bits (133), Expect = 1e-10
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 3 EGSQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFE 61
+ + ++ +N KK+ L D+ EGQ +AH+ VL CS F
Sbjct: 2 MSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFH----S 57
Query: 62 MLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
++ Q + E I + E + +I + Y ++ ++ + ++ K E L + + E
Sbjct: 58 RIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEE 116
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 54.2 bits (131), Expect = 2e-10
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
N KK+ L D+ EGQ +AH+ VL CS F +
Sbjct: 28 NDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFH-SRIVGQTDAELTVTLPEEVTVKG 86
Query: 81 FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSES 121
F L I + Y ++ ++ D ++ + E L + + ES
Sbjct: 87 FEPL---IQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 56.1 bits (136), Expect = 2e-10
Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 5 SQEFCLRANQETMISLVNSLLKKETLVD----LRSAEGQYLKAHKVVLCTCSPVFEIPLF 60
+++F ++ + N ++ D A G+ +AH+ VL + F
Sbjct: 7 AEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFT---- 62
Query: 61 EMLLSQHNDER-------PILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERL 113
+L Q ++ R + + ++++I+YMY G + ++ ++ L+ A+R
Sbjct: 63 PLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRF 122
Query: 114 QIRGLSE 120
+ L E
Sbjct: 123 LLIRLKE 129
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 55.7 bits (134), Expect = 3e-10
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLF-EMLLSQHNDERPILIFSET 79
L + D GQ +AHK +L SPVF EM + + + + I ++
Sbjct: 166 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM---EESKKNRVEI-NDV 221
Query: 80 KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGL 118
+ K M+ ++Y G+ + L AA++ + L
Sbjct: 222 EPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 260
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 53.0 bits (128), Expect = 4e-10
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIF-SET 79
N + D+ +G KAH+ VL S F + + + +
Sbjct: 25 NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRD----LFNNSRSAVVELPAAVQPQ 80
Query: 80 KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
F ++ + + Y G +++ + + + A LQI+ + E
Sbjct: 81 SFQQI---LSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIME 118
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 51.8 bits (125), Expect = 1e-09
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 4 GSQEFCLRANQ--ETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLF 60
GS + ++ + ++ +N L ++ L D+ + +AHK VL CS +F
Sbjct: 1 GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFT 60
Query: 61 EMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQI 115
+ L + + FN L +D+MY +N+ + + A LQ+
Sbjct: 61 DQLKRNLSVINLDPEINPEGFNIL---LDFMYTSRLNLREGNIMAVMATAMYLQM 112
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 53.4 bits (129), Expect = 2e-09
Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 22/110 (20%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
+S ++ D +G+ + K +L SP L +
Sbjct: 23 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR----TKLNYN-------PPKDDGS 71
Query: 81 FNE----------LKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
+ ++ ++DY++ G++ + D + ++AA+ L + L
Sbjct: 72 TYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 121
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 51.1 bits (123), Expect = 2e-09
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
N D+ E + +AHK +L S F L S +
Sbjct: 23 NEQRGHGLFCDVTVIVEDRKFRAHKNILSASS-----TYFHQLFSVAGQVVELSFIRAEI 77
Query: 81 FNELKSMIDYMYKGE-VNIAPDELNHFLKAAERLQIRGLSE 120
F E+ ++Y+Y + V + D L+ +K+ + L ++ ++
Sbjct: 78 FAEI---LNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 50.7 bits (122), Expect = 3e-09
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Query: 36 AEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGE 95
Q AH +VL S + L + + +++++Y
Sbjct: 37 VGSQEFPAHSLVLAGVSQQLG-RRGQWALGEGISP-----------STFAQLLNFVYGES 84
Query: 96 VNIAPDELNHFLKAAERLQIRGLSE 120
V + P EL +AA L ++ L E
Sbjct: 85 VELQPGELRPLQEAARALGVQSLEE 109
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 51.2 bits (123), Expect = 3e-09
Identities = 16/117 (13%), Positives = 44/117 (37%), Gaps = 2/117 (1%)
Query: 5 SQEFCLRANQETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEML 63
S + ++ ++S ++ D +G+ + K +L SP
Sbjct: 22 SMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR-TKLNYN 80
Query: 64 LSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
+ + + ++ ++DY++ G++ + D + ++AA+ L + L
Sbjct: 81 PPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 137
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 50.3 bits (121), Expect = 5e-09
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 22 NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILI-FSET 79
N + L D+ EG+ H+ VL CS F+ ++ S ++ +
Sbjct: 17 NEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFK----KLFTSGAVVDQQNVYEIDFV 72
Query: 80 KFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
L +++D+ Y + ++ + L AA L+I +S
Sbjct: 73 SAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSH 113
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 27.9 bits (63), Expect = 1.1
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 88 IDYMY----KGEVNIAPDELNHFLKAAERLQIRGLS 119
+Y + +L L AA L GL+
Sbjct: 32 RATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLN 67
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 92 YKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGT---SQMD 148
G N P N F + Q L S + + ++++ +Q + ++
Sbjct: 394 QGGAPNYYP---NSFGAPEQ--QPSALEHSIQYSGEVRRFNTANDDNVTQVRAFYVNVLN 448
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 27.1 bits (61), Expect = 2.0
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 78 ETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
+ F ++ I +Y + ++L + + ++ GL+
Sbjct: 25 KLIFEKVG--IKGIYN-LFEVPKEKLKESVDTFKIIKCGGLN 63
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 27.2 bits (61), Expect = 2.0
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 88 IDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
+ Y Y + ++ + L++RG
Sbjct: 59 LPYTYMA-FEVDNTTFASAIEGLKALKMRGTG 89
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A
{Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A*
3m1e_A
Length = 313
Score = 27.2 bits (61), Expect = 2.1
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 11/31 (35%)
Query: 101 DELNHFLKAAERL---------QIRGLSESE 122
+E KAAE+L QI+ L E E
Sbjct: 14 EEQ-SISKAAEKLCIAQPPLSRQIQKL-EEE 42
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional
activator, LYSR-type transcripti regulator; 1.80A
{Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A
2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Length = 312
Score = 27.2 bits (61), Expect = 2.3
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 11/31 (35%)
Query: 101 DELNHFLKAAERL---------QIRGLSESE 122
+E F KAA++L QI+ L E E
Sbjct: 14 EEQ-SFTKAADKLCIAQPPLSRQIQNL-EEE 42
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA
binding and regulatory domai binding protein; 2.20A
{Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB:
1iz1_A
Length = 294
Score = 27.1 bits (61), Expect = 2.4
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 11/31 (35%)
Query: 101 DELNHFLKAAERL---------QIRGLSESE 122
+ + AA+RL Q++ L E++
Sbjct: 14 EAG-NMAAAAKRLHVSQPPITRQMQAL-EAD 42
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 27.0 bits (60), Expect = 2.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 88 IDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
+ +Y V++ D L FL+A G S
Sbjct: 262 FNGVY---VHLLVDNLVSFLQAYSSSDFAGFS 290
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 27.1 bits (61), Expect = 2.6
Identities = 7/52 (13%), Positives = 12/52 (23%), Gaps = 3/52 (5%)
Query: 93 KGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGT 144
VN P+ K + + ++ QAG
Sbjct: 378 TSSVNYEPNRYQDEPKQTPEYTEDTQPLHDDIHG---RLEIEKTNNFGQAGE 426
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 27.2 bits (61), Expect = 2.7
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 87 MIDYMYKGEVNIAPDELNHFLKAAERL--QIRGLSESESTTQTAVHYPDDDEEDYSQAGT 144
M + Y N P L + + + + Y DD + Y+Q G
Sbjct: 372 MQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGD 431
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 26.7 bits (60), Expect = 3.0
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 5/53 (9%)
Query: 92 YKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGT 144
VN P + + + T E+++ QAG
Sbjct: 370 TTSGVNYEP---SRLEPRPA--DDKARYSELPLSGTTQQAKITREQNFKQAGD 417
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 3.1
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 41 LKAHKVVLCTCSPVFEIPLFEMLLSQHNDE---RPILIFSETKFNELKSMIDYMYKGEVN 97
++ ++ P +P + S N+E P+L S +++ ++
Sbjct: 308 VRCYE-----AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-------- 354
Query: 98 IAPDELNHFLKAAERLQI 115
+ N L A ++++I
Sbjct: 355 ----KTNSHLPAGKQVEI 368
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 26.4 bits (59), Expect = 3.5
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 88 IDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
+DY+Y + EL ++ + +RG +
Sbjct: 65 LDYVYLA-FEVGDKELKDVVQGFRAMNLRGWN 95
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 26.3 bits (59), Expect = 3.9
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 81 FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
+++L ++++Y ++ H +K L IRG +
Sbjct: 28 YDKLG--LNFIY---KAFTTQDIEHAIKGVRALGIRGCA 61
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics,
PSI-biology, protei structure initiative; HET: MES;
1.47A {Escherichia coli} PDB: 1w8g_A*
Length = 245
Score = 25.9 bits (58), Expect = 5.7
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 12/36 (33%)
Query: 95 EVNIA---------PDELNHFLKAA---ERLQIRGL 118
++NI+ EL+ A RL++RGL
Sbjct: 129 QINISDENSKSGIQLAELDELAAAVAELPRLRLRGL 164
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 25.6 bits (57), Expect = 6.7
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 88 IDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
I Y ++ P ++ + L I G++
Sbjct: 51 IPARYHL-FSVEPGQVGAAIAGVRALGIAGVN 81
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 25.7 bits (57), Expect = 7.4
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 99 APDELNHF---LKAAERLQIRGLSESESTTQTAVHY-PDDDEEDYSQAGT 144
P+ N + ++ A + G E T V Y + + DY Q
Sbjct: 394 TPNYANAYNCPIQYAVSPKASGNKPDEKYTGEVVPYHWEHTDYDYFQPKM 443
>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.65A {Thermobifida fusca}
Length = 213
Score = 25.1 bits (55), Expect = 8.2
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 92 YKGE--VNIAPDELN---HFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDY 139
+GE ++ + L L+ L+ T VHYP+D+ +
Sbjct: 105 DRGEITFHVQREHLLDVATRLRDDPALRFELCLG-----VTGVHYPEDEGNEL 152
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 25.2 bits (56), Expect = 8.3
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 25/120 (20%)
Query: 44 HKVVLCTCSPVFEI-PLFEML-----------LSQHNDERPILIFSET-KFNELKSMIDY 90
VV+CT + I L Q++ E L+++++ +K ++
Sbjct: 39 CSVVICTGRSMGTIQDDVLSLGVDGYIAGGGNYIQYHGE---LLYNQSFNQRLIKEVVCL 95
Query: 91 MYKGEVNI---------APDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQ 141
+ K EV + + +L+ ++ Q + Y ++ EE SQ
Sbjct: 96 LKKREVAFSIESQEKVFMNQKAKEIFETMNQLKGTNSCINKQHIQEKITYENNIEEYKSQ 155
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 25.2 bits (56), Expect = 8.6
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 81 FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
++ +Y I P+EL + + L+++G++
Sbjct: 35 IRYAG--LNAVY-LAFEINPEELKKAFEGFKALKVKGIN 70
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 25.6 bits (57), Expect = 8.8
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 59 LFEMLLSQHNDERPILIFSETK 80
L ++L + D L+F ETK
Sbjct: 266 LLDLLNATGKDSL-TLVFVETK 286
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 25.2 bits (56), Expect = 8.9
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 88 IDYMYKGEVNIAPDELNHFLKAAERLQIRGLS 119
++Y+Y ++ P+ L + + A+ L I G +
Sbjct: 39 LNYVYVA-FDVLPENLKYVIDGAKALGIVGFN 69
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 25.7 bits (56), Expect = 9.2
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 34 RSAEGQYLKAHKVVLCTCS 52
R E + L VV CTC
Sbjct: 489 RKTEAEILNKADVVCCTCV 507
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 25.2 bits (56), Expect = 9.6
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 10 LRANQETMISLVNSLLKKETL 30
+R ++ + ++V LL+KET+
Sbjct: 427 IRKYRKQLDNIVEILLEKETI 447
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.361
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,093,957
Number of extensions: 111556
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 55
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (24.0 bits)