RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17455
         (149 letters)



>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 57.3 bits (138), Expect = 4e-12
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 14  QETMISLVNSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERP 72
              ++   N +    TL D+    + Q   AH+ VL   S +FE           +    
Sbjct: 12  PTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE--------ILFHRNSQ 63

Query: 73  ILIFSETKFNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
                       + +++Y Y   +    ++L+  L AAE L+I  L E
Sbjct: 64  HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE 111


>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 54.7 bits (131), Expect = 4e-11
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 22  NSLLKKETLVDLR-SAEGQYLKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETK 80
           N L  ++ L D+      +  +AHK VL  CS +F     + L    +        +   
Sbjct: 17  NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--- 73

Query: 81  FNELKSMIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSE 120
                 ++D+MY   +N+    +   +  A  LQ+  + +
Sbjct: 74  PEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 113


>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
          Length = 491

 Score = 26.4 bits (58), Expect = 1.5
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 87  MIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVH---YPDDDEEDYSQAG 143
           M +  Y    N  P  L  + K  +  +    + +    +  V    Y  DD + Y+Q G
Sbjct: 372 MQNGYYGSLQNYTPSSLPGY-KEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPG 430

Query: 144 T 144
            
Sbjct: 431 D 431


>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
           dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 203

 Score = 25.9 bits (56), Expect = 2.1
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 41  LKAHKVVLCTCSPVFEIPLFEMLLSQHNDERPILIFSETKFNELKSMIDYMYKGEVNIAP 100
             AH   +    P        +LLS   D+ P + F      E K +  Y    E    P
Sbjct: 152 FFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFF------EPKIL--YRAAAEE--VP 201

Query: 101 DE 102
            E
Sbjct: 202 IE 203


>d2ft1a1 d.183.1.1 (A:104-383) Major capsid protein gp5
           {Bacteriophage HK97 [TaxId: 37554]}
          Length = 280

 Score = 25.9 bits (56), Expect = 2.2
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 98  IAPDELNHFLKAA-ERLQIRGLSESESTTQTAVHYP 132
           I P ++   +     RL IR L     T+  A+ Y 
Sbjct: 13  IQPMQIPGIIMPGLRRLTIRDLLAQGRTSSNALEYV 48


>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
          Length = 484

 Score = 25.6 bits (56), Expect = 2.6
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 87  MIDYMYKGEVNIAPDELNHFLKAAERLQIRGLSESESTTQTAVHYPDDDEEDYSQAGT 144
           +        VN  P  L     A ++ +   L  S     T        E+++ QAG 
Sbjct: 365 LNTGHTTSGVNYEPSRLEPR-PADDKARYSELPLSG----TTQQAKITREQNFKQAGD 417


>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 497

 Score = 25.3 bits (55), Expect = 4.0
 Identities = 1/25 (4%), Positives = 10/25 (40%), Gaps = 3/25 (12%)

Query: 127 TAVHYPDDDEEDYSQAGT---SQMD 148
               +   ++++ +Q      + ++
Sbjct: 424 EVRRFNTANDDNVTQVRAFYVNVLN 448


>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
           C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 202

 Score = 24.8 bits (53), Expect = 5.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 10  LRANQETMISLVNSLLKKETL 30
           +   +E + ++V  LL+KET+
Sbjct: 161 VEEYKEPLKAVVKKLLEKETI 181


>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 55

 Score = 23.0 bits (50), Expect = 6.2
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 96  VNIAPDELNHFLKAAERLQIRGL 118
           + +    L   + AA  L I+GL
Sbjct: 8   LKVDQGTLFELILAANYLDIKGL 30


>d1xe7a_ b.82.1.16 (A:) Hypothetical protein YML079W {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score = 24.2 bits (52), Expect = 6.7
 Identities = 3/30 (10%), Positives = 7/30 (23%)

Query: 34  RSAEGQYLKAHKVVLCTCSPVFEIPLFEML 63
                +      ++     P F+      L
Sbjct: 142 FLLPNEEFDNGFLISEVVVPGFDFEDHTFL 171


>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 193

 Score = 24.2 bits (52), Expect = 7.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 10  LRANQETMISLVNSLLKKETL 30
           +R  ++ + ++V  LL+KET+
Sbjct: 162 IRKYRKQLDNIVEILLEKETI 182


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 499,851
Number of extensions: 20788
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 14
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 49 (23.2 bits)