BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17456
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 62/70 (88%)
Query: 128 DTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQE 187
DTAYVLAYSIIMLTTDLHSPQVK+KMTKEQYI++NRGI+DS+DLPE YLS IY+EIA ++
Sbjct: 142 DTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKK 201
Query: 188 IKMKSANKPG 197
I MK + G
Sbjct: 202 ISMKETKETG 211
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 47/61 (77%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDD 60
MYAYVDQ F+G+D VSALR FLEGFRLPGEAQKIDRLMEKFA+RY E N L D
Sbjct: 83 MYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASAD 142
Query: 61 T 61
T
Sbjct: 143 T 143
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2
(Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human).
Northeast Structural Genomics Consortium Target Id
Hr5562a
pdb|3SWV|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2 (Brefeldin
A-Inhibited Gep 2) From Homo Sapiens (Human), Northeast
Structural Genomics Consortium Target Id Hr5562a
Length = 202
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 56/68 (82%)
Query: 128 DTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQE 187
DTAYVLAYSII LTTDLHSPQVK+K TKEQYI+ NRGI+DS+DLPE YLS IY+EI ++
Sbjct: 133 DTAYVLAYSIIXLTTDLHSPQVKNKXTKEQYIKXNRGINDSKDLPEEYLSSIYEEIEGKK 192
Query: 188 IKMKSANK 195
I K +
Sbjct: 193 IAXKETKE 200
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 44/60 (73%)
Query: 2 YAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDT 61
YAYVDQ+ F ++ VSALR FLEGFRLPGEAQKIDRL EKFA+RY E N L DT
Sbjct: 75 YAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLXEKFAARYIECNQGQTLFASADT 134
>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
Length = 221
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 4 YVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEI 63
++D F G + A+R L FRLPGE+Q+I+R++E F+S+Y + N ++
Sbjct: 76 FIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVE------- 128
Query: 64 ASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINV 123
LE + + +TE +I+V
Sbjct: 129 ----LEDKKAG-------------------------KNGSESMTE---------DDIIHV 150
Query: 124 AHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEI 183
D+ +VL+YSIIML TD H+PQVK MT + Y RG + +D P YL KIY I
Sbjct: 151 QPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSI 210
Query: 184 ADQEIKM 190
+EI M
Sbjct: 211 KVKEIVM 217
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|F Chain F, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 123 VAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDE 182
V + DT YVL+YS+IML TDLH+P V+ KM E+++ +NRGI++ DLPE L +YD
Sbjct: 129 VFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDS 188
Query: 183 IADQEIKM 190
I ++ K+
Sbjct: 189 IRNEPFKI 196
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 39/53 (73%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNV 53
++A+VD +F +LV ALR FL FRLPGEAQKIDR+ME FA RYC NP V
Sbjct: 77 LHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGV 129
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
Length = 203
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 123 VAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDE 182
V + DT YVL+YS+IML TDLH+P V+ KM E+++ +NRGI++ DLPE L +YD
Sbjct: 129 VFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDS 188
Query: 183 IADQEIKM 190
I ++ K+
Sbjct: 189 IRNEPFKI 196
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNV 53
++A+VD +F +LV ALR FL FRLPG+AQKIDR+ME FA RYC NP V
Sbjct: 77 LHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGV 129
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin
A- Sensitizing Mutations
pdb|1S9D|E Chain E, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 123 VAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDE 182
V + DT YVL+YS+IML TDLH+P V+ KM E+++ +NRGI++ DLPE L +YD
Sbjct: 129 VFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDS 188
Query: 183 IADQEIKM 190
I ++ K+
Sbjct: 189 IRNEPFKI 196
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 39/53 (73%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNV 53
++A+VD +F +LV ALR FL FRLPGEAQKIDR+ME FA RYC NP V
Sbjct: 77 LHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLXNPGV 129
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
pdb|4A4P|B Chain B, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
Length = 192
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 123 VAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDE 182
V + DT YVL+++IIML T LH+P VK K T E++I +NRGI+D DLPE L +Y+
Sbjct: 123 VFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYES 182
Query: 183 IADQEIKM 190
I ++ K+
Sbjct: 183 IKNEPFKI 190
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDD 60
++A+V+ +F +LV ALR FL FRLPGEAQKIDR+ME FA RYC+ N V Q+ D
Sbjct: 71 LHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGV-FQSTDT 129
Query: 61 TEIASLCL 68
+ S +
Sbjct: 130 CYVLSFAI 137
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average
Structure
Length = 200
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 123 VAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDE 182
V + DT YVL+++IIML T LH+P VK K T E++I +NRGI+D DLPE L +Y+
Sbjct: 123 VFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYES 182
Query: 183 IADQEIKM 190
I ++ K+
Sbjct: 183 IKNEPFKI 190
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDD 60
++A+V+ +F +LV ALR FL FRLPGEAQKIDR+ME FA RYC+ N V Q+ D
Sbjct: 71 LHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGV-FQSTDT 129
Query: 61 TEIASLCL 68
+ S +
Sbjct: 130 CYVLSFAI 137
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 55/187 (29%)
Query: 4 YVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEI 63
Y+ F+G + A+R L FRLPGE+Q+I+R++E F+S YCEN Q+ D ++I
Sbjct: 91 YIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCEN------QDYDPSKI 144
Query: 64 ASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINV 123
+ + I + VQ A + + S I
Sbjct: 145 SDNAEDDI-----------------STVQPDADSVFILSYSII----------------- 170
Query: 124 AHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEI 183
ML TDLH+PQVK M+ E Y +G + +D P YL ++Y I
Sbjct: 171 ---------------MLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSI 215
Query: 184 ADQEIKM 190
D+EI M
Sbjct: 216 RDKEIVM 222
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDD 60
+ A+V+ +FA +LV ALR FL FRLPGEAQKIDR+ME FASRYC NP V Q+ D
Sbjct: 79 LQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGV-FQSTDT 137
Query: 61 TEIASLCL 68
+ S +
Sbjct: 138 CYVLSFAI 145
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 123 VAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDE 182
V + DT YVL+++IIML T LH+ V+ K T E++I +NRGI++ DLPE L +Y+
Sbjct: 131 VFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNRGINEGGDLPEELLRNLYES 190
Query: 183 IADQEIKM 190
I ++ K+
Sbjct: 191 IKNEPFKI 198
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno
Length = 195
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDD 60
++A+VD +F +LV ALR FL FRLPGEAQKIDR+ME FA RYC NP V Q+ D
Sbjct: 75 LHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGV-FQSTDT 133
Query: 61 TEIASLCL 68
+ S +
Sbjct: 134 CYVLSFAV 141
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 123 VAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDE 182
V + DT YVL++++IML T LH+P V+ K E+++ +NRGI++ DLPE L +YD
Sbjct: 127 VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDS 186
Query: 183 IADQEIKM 190
I ++ K+
Sbjct: 187 IRNEPFKI 194
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDD 60
+ A+V+ +FA +LV ALR FL FRLPGEAQKIDR E FASRYC NP V Q+ D
Sbjct: 79 LQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRXXEAFASRYCLCNPGV-FQSTDT 137
Query: 61 TEIASLCL 68
+ S +
Sbjct: 138 CYVLSFAI 145
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 123 VAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDE 182
V + DT YVL+++II L T LH+ V+ K T E++I NRGI++ DLPE L +Y+
Sbjct: 131 VFQSTDTCYVLSFAIIXLNTSLHNHNVRDKPTAERFITXNRGINEGGDLPEELLRNLYES 190
Query: 183 IADQEIKM 190
I ++ K+
Sbjct: 191 IKNEPFKI 198
>pdb|1XSZ|A Chain A, The Structure Of Ralf
pdb|1XSZ|B Chain B, The Structure Of Ralf
Length = 356
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCD 59
+ A+ QM F G+ V LR FL+ F+LPGEAQKIDRL++ F+ Y + NP+V + N D
Sbjct: 75 LKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDV-VSNAD 132
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 122 NVAHTDDTAYVLAYSIIMLTTDLHSPQV--KSKMTKEQYIRLNRGISDSQDLPEAYLSKI 179
+V D AY+LA+ IML TDLH+P + K+KMT + R RG ++ D +L ++
Sbjct: 126 DVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEEL 185
Query: 180 YDEI 183
Y EI
Sbjct: 186 YSEI 189
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf
Length = 203
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCD 59
+ A+ Q F G+ V LR FL+ F+LPGEAQKIDRL++ F+ Y + NP+V + N D
Sbjct: 75 LKAFTSQXNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDV-VSNAD 132
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 122 NVAHTDDTAYVLAYSIIMLTTDLHSPQV--KSKMTKEQYIRLNRGISDSQDLPEAYLSKI 179
+V D AY+LA+ I L TDLH+P + K+K T + R RG ++ D +L ++
Sbjct: 126 DVVSNADAAYLLAFQTIXLNTDLHNPSIPEKNKXTVDGLKRNLRGGNNGGDFDAKFLEEL 185
Query: 180 YDEI 183
Y EI
Sbjct: 186 YSEI 189
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 123 VAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMT-KEQYIRLNRGISDSQDLPEAYLSK 178
V H D L +I + T HS ++K MT K Y N G+ +S PEAY+++
Sbjct: 15 VGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 71
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 123 VAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMT-KEQYIRLNRGISDSQDLPEAYLSK 178
V H D L +I + T HS ++K MT K Y N G+ +S PEAY+++
Sbjct: 14 VGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
Cytokine-Induced Apoptosis Inhibitor Anamorsin
Length = 182
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 70 GIRCAIRIACIFHLTLERNAYVQALA----RFTLLTANSPITEMKAKNIETIKTLINVAH 125
GI +A ++ ++++ V+AL + LT N E + ++E IK L+ AH
Sbjct: 12 GISAGQFVAVVW----DKSSPVEALKGLVDKLQALTGN----EGRV-SVENIKQLLQSAH 62
Query: 126 TDDTAYVLAYSIIMLTTDLHSPQVKSKMTK 155
+ + ++ ++ +T LHS ++ +++ +
Sbjct: 63 KESSFDIILSGLVPGSTTLHSAEILAEIAR 92
>pdb|3D5L|A Chain A, Crystal Structure Of Regulatory Protein Recx
pdb|3D5L|B Chain B, Crystal Structure Of Regulatory Protein Recx
Length = 221
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 117 IKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYL 176
+K L DD AY +Y M+ TDL P + + +++ I G SD D +
Sbjct: 99 LKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGI----GESDIDDALTQFT 154
Query: 177 SKIYDEIA 184
++ E+A
Sbjct: 155 PEVQAELA 162
>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Anamorsin
Length = 176
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 113 NIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTK 155
++E IK L+ AH + + ++ ++ +T LHS ++ +++ +
Sbjct: 47 SVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIAR 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,380,696
Number of Sequences: 62578
Number of extensions: 202381
Number of successful extensions: 467
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 40
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)