Query psy17456
Match_columns 203
No_of_seqs 136 out of 822
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 22:55:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0928|consensus 100.0 1E-43 2.2E-48 352.8 10.7 130 1-199 579-708 (1386)
2 cd00171 Sec7 Sec7 domain; Doma 100.0 1.5E-40 3.2E-45 276.3 13.2 119 1-188 67-185 (185)
3 PF01369 Sec7: Sec7 domain; I 100.0 1.8E-40 3.9E-45 276.4 10.5 119 1-188 71-190 (190)
4 smart00222 Sec7 Sec7 domain. D 100.0 7.7E-40 1.7E-44 272.3 13.0 120 1-188 68-187 (187)
5 KOG0929|consensus 100.0 6.9E-40 1.5E-44 330.4 12.5 127 1-196 579-705 (1514)
6 PLN03076 ARF guanine nucleotid 100.0 2E-39 4.3E-44 335.1 13.9 128 1-198 681-808 (1780)
7 COG5307 SEC7 domain proteins [ 100.0 4.1E-39 8.9E-44 319.6 10.5 129 1-198 334-462 (1024)
8 KOG0930|consensus 100.0 3E-38 6.4E-43 275.1 8.5 127 1-197 126-252 (395)
9 KOG0931|consensus 100.0 1.1E-37 2.4E-42 284.7 7.5 128 1-195 263-392 (627)
10 KOG0932|consensus 99.9 2.1E-27 4.6E-32 221.5 10.1 120 2-191 341-460 (774)
11 PLN03076 ARF guanine nucleotid 99.6 1.4E-16 3E-21 166.4 6.1 88 53-143 889-976 (1780)
12 KOG0929|consensus 99.5 9.1E-15 2E-19 149.4 4.6 88 53-143 781-868 (1514)
13 KOG0928|consensus 92.3 0.5 1.1E-05 49.8 7.8 88 55-142 756-850 (1386)
14 PF12174 RST: RCD1-SRO-TAF4 (R 44.1 18 0.00039 25.6 2.0 30 150-184 39-68 (70)
15 PF07867 DUF1654: Protein of u 43.1 16 0.00034 26.4 1.5 21 25-45 29-50 (73)
16 TIGR01294 P_lamban phospholamb 32.6 1.4E+02 0.0031 19.6 4.6 29 72-100 9-38 (52)
17 PF14837 INTS5_N: Integrator c 30.5 1.4E+02 0.0031 25.7 5.6 51 12-68 50-111 (213)
18 PF14804 Jag_N: Jag N-terminus 29.0 26 0.00057 23.3 0.8 22 10-31 2-23 (52)
19 PF04272 Phospholamban: Phosph 28.5 1.7E+02 0.0038 19.3 4.5 29 72-100 9-38 (52)
20 PRK10945 gene expression modul 26.2 1E+02 0.0023 22.1 3.4 28 151-183 4-31 (72)
21 PRK10391 oriC-binding nucleoid 25.0 1.1E+02 0.0024 21.9 3.4 27 153-184 1-27 (71)
22 PF02037 SAP: SAP domain; Int 24.9 1.3E+02 0.0028 18.0 3.3 27 16-42 6-35 (35)
23 PF12637 TSCPD: TSCPD domain; 24.9 86 0.0019 23.1 3.0 16 153-168 55-70 (95)
24 PF14904 FAM86: Family of unkn 24.7 1.1E+02 0.0024 23.3 3.6 26 29-54 3-28 (100)
25 PF07688 KaiA: KaiA domain; I 24.2 1.4E+02 0.0031 26.7 4.6 46 13-58 111-182 (283)
26 PF14069 SpoVIF: Stage VI spor 23.5 1.2E+02 0.0026 22.0 3.4 49 139-188 17-65 (79)
27 PF07962 Swi3: Replication For 22.8 1.6E+02 0.0035 21.3 4.0 40 18-57 15-57 (83)
28 PF09058 L27_1: L27_1; InterP 21.3 1.6E+02 0.0035 20.7 3.5 33 17-49 13-48 (64)
29 PF13113 DUF3970: Protein of u 20.6 49 0.0011 23.0 0.8 20 25-44 3-22 (60)
30 PHA02885 putative interleukin 20.4 61 0.0013 25.2 1.4 39 158-198 78-116 (135)
31 TIGR01449 PGP_bact 2-phosphogl 20.4 3.1E+02 0.0068 21.8 5.8 37 12-48 42-78 (213)
32 COG5307 SEC7 domain proteins [ 20.3 50 0.0011 34.7 1.2 67 31-104 491-559 (1024)
No 1
>KOG0928|consensus
Probab=100.00 E-value=1e-43 Score=352.81 Aligned_cols=130 Identities=45% Similarity=0.771 Sum_probs=118.3
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++|+..|||.||+||+|||.||.+||||||||+|+||||+||++||.+|+...+-+.
T Consensus 579 Ln~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~k---------------------- 636 (1386)
T KOG0928|consen 579 LNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADK---------------------- 636 (1386)
T ss_pred HHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCcccccc----------------------
Confidence 5799999999999999999999999999999999999999999999999875332211
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR 160 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~ 160 (203)
| .+|+||||+||||||.||||||+|||++||+|
T Consensus 637 ----------------------------------------------D-avFvLsYSIIMLNTDqHNpqVK~~MT~dDf~r 669 (1386)
T KOG0928|consen 637 ----------------------------------------------D-AVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIR 669 (1386)
T ss_pred ----------------------------------------------c-hhhhhhhhhheecccccChhhhccCCHHHHhh
Confidence 1 14469999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCCCCCC
Q psy17456 161 LNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPGKQ 199 (203)
Q Consensus 161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~~~~ 199 (203)
|+||+|+|+|||++||.+||++|+.+||+||+++.+...
T Consensus 670 Nlrg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~ 708 (1386)
T KOG0928|consen 670 NLRGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEE 708 (1386)
T ss_pred hcccccCCCCCCHHHHHHHHHHHhhcceecccccCCchh
Confidence 999999999999999999999999999999999887654
No 2
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=1.5e-40 Score=276.34 Aligned_cols=119 Identities=55% Similarity=0.943 Sum_probs=109.3
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++|+++|||+|++|++|||.||.+|+||||+|+||||||+||++||+|||+....
T Consensus 67 L~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~------------------------ 122 (185)
T cd00171 67 LHEFVDLFDFSGLRLDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSS------------------------ 122 (185)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCC------------------------
Confidence 57999999999999999999999999999999999999999999999999986421
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR 160 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~ 160 (203)
|.|+ .+.++||+||||||||||++++|||+++|++
T Consensus 123 --------------------------------~~d~-------------v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~ 157 (185)
T cd00171 123 --------------------------------SADA-------------AYTLAYSIIMLNTDLHNPNVKKKMTLEDFIK 157 (185)
T ss_pred --------------------------------ChhH-------------HHHHHHHHHHHhHHhcCcccCCCCCHHHHHH
Confidence 1122 2247999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHhhhCcc
Q psy17456 161 LNRGISDSQDLPEAYLSKIYDEIADQEI 188 (203)
Q Consensus 161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei 188 (203)
|++|+++|+++|+++|++||++|+.+||
T Consensus 158 ~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 158 NLRGINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999986
No 3
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=1.8e-40 Score=276.38 Aligned_cols=119 Identities=50% Similarity=0.911 Sum_probs=99.5
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCC-CCCCCCCchHHHHhhhhchhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPN-VGLQNCDDTEIASLCLEGIRCAIRIAC 79 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~-~~~q~~~d~~~~~~cL~G~r~ai~ia~ 79 (203)
|++|++.|||+|++|++|||.||.+|+||||+|+|||||++||++||+|||+ .++.+
T Consensus 71 L~~y~~~fdf~~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~---------------------- 128 (190)
T PF01369_consen 71 LKEYISLFDFSGMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKS---------------------- 128 (190)
T ss_dssp HHHHHHTSS-TTS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSS----------------------
T ss_pred HHHHHHHcCCcCccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCccccccc----------------------
Confidence 5799999999999999999999999999999999999999999999999996 43322
Q ss_pred hhcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHH
Q psy17456 80 IFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYI 159 (203)
Q Consensus 80 ~~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi 159 (203)
.|+ ++.++||+||||||+|||++++|||+++|+
T Consensus 129 ----------------------------------~d~-------------v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 129 ----------------------------------PDT-------------VYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp ----------------------------------HHH-------------HHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred ----------------------------------HhH-------------HHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 121 234799999999999999999999999999
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHhhhCcc
Q psy17456 160 RLNRGISDSQDLPEAYLSKIYDEIADQEI 188 (203)
Q Consensus 160 ~n~rgi~~~~d~~~~~L~~iY~~I~~~ei 188 (203)
+|++|+++|+++|+++|.+||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 4
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=7.7e-40 Score=272.27 Aligned_cols=120 Identities=57% Similarity=0.939 Sum_probs=109.3
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++|+++|+|+|++||+|||.||.+|+||||+|+||||||+||++||++||.....
T Consensus 68 L~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~------------------------ 123 (187)
T smart00222 68 LHAFVDLFDFSAKDLDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSK------------------------ 123 (187)
T ss_pred HHHHHHhcCcCCCcHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCC------------------------
Confidence 57999999999999999999999999999999999999999999999999986421
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR 160 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~ 160 (203)
.|.|++ +.++||+||||||||||++|+|||+++|++
T Consensus 124 -------------------------------~~~d~~-------------y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~ 159 (187)
T smart00222 124 -------------------------------LNADAA-------------YTLAYSLIMLNTDLHNPNVKKKMTLEDFIK 159 (187)
T ss_pred -------------------------------CChhHH-------------HHHHHHHHHHhHHhcCCccCCCCCHHHHHH
Confidence 012222 247999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHhhhCcc
Q psy17456 161 LNRGISDSQDLPEAYLSKIYDEIADQEI 188 (203)
Q Consensus 161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei 188 (203)
|++|+++|.++|+++|++||++|+.+||
T Consensus 160 ~~~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 160 NVRGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred HHhccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999986
No 5
>KOG0929|consensus
Probab=100.00 E-value=6.9e-40 Score=330.40 Aligned_cols=127 Identities=65% Similarity=1.005 Sum_probs=117.3
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++||+.|||++++|++|||.||..||||||+|+|||||++||++||.|||+..+.++|
T Consensus 579 MhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssAD--------------------- 637 (1514)
T KOG0929|consen 579 MHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSAD--------------------- 637 (1514)
T ss_pred HHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCcc---------------------
Confidence 78999999999999999999999999999999999999999999999999995333322
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR 160 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~ 160 (203)
.+++++||+||||||+|||+||+|||++|||+
T Consensus 638 ------------------------------------------------taYVLAfSlIMLnTDlHnp~vKnKMTK~dFI~ 669 (1514)
T KOG0929|consen 638 ------------------------------------------------TAYVLAFSLIMLNTDLHNPNVKNKMTKADFIR 669 (1514)
T ss_pred ------------------------------------------------chHHHHHHHHHHhccccCchhhccccHHHHHH
Confidence 13358999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCCC
Q psy17456 161 LNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKP 196 (203)
Q Consensus 161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~ 196 (203)
|+||||+|+|+|++||+.+||.|..+||+|.++...
T Consensus 670 nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~ 705 (1514)
T KOG0929|consen 670 NNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLL 705 (1514)
T ss_pred hcccccCcccChHHHHHHHHHHhhhccccccccccc
Confidence 999999999999999999999999999999887654
No 6
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=2e-39 Score=335.07 Aligned_cols=128 Identities=55% Similarity=0.949 Sum_probs=117.0
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++|++.|||+|+++|+|||.||.+||||||||+||||||+||++||+|||... .
T Consensus 681 l~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f-~------------------------ 735 (1780)
T PLN03076 681 MHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAF-S------------------------ 735 (1780)
T ss_pred HHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcC-C------------------------
Confidence 689999999999999999999999999999999999999999999999999852 1
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR 160 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~ 160 (203)
|.|+ .++++||+||||||+|||+||+|||+++||+
T Consensus 736 --------------------------------~~D~-------------~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~ 770 (1780)
T PLN03076 736 --------------------------------SADT-------------AYVLAYSVIMLNTDAHNPMVKNKMSADDFIR 770 (1780)
T ss_pred --------------------------------CHHH-------------HHHHHHHHHHHhHHhcCCccCCCCCHHHHHH
Confidence 1122 2358999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCCCCC
Q psy17456 161 LNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPGK 198 (203)
Q Consensus 161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~~~ 198 (203)
|+||+|+|+|+|++||++||++|+.+||+|+++..+..
T Consensus 771 n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~~~~~~~~ 808 (1780)
T PLN03076 771 NNRGIDDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQ 808 (1780)
T ss_pred HhhCCCCCCCCCHHHHHHHHHHHHhCcccCcccccccc
Confidence 99999999999999999999999999999999875543
No 7
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=4.1e-39 Score=319.62 Aligned_cols=129 Identities=40% Similarity=0.753 Sum_probs=117.9
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++|++.|||.|++||+|||.||++||||||+|+||||||+||.+||.+||.......
T Consensus 334 L~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~---------------------- 391 (1024)
T COG5307 334 LREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKP---------------------- 391 (1024)
T ss_pred HHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCcc----------------------
Confidence 6899999999999999999999999999999999999999999999999988532110
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR 160 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~ 160 (203)
| .++++|||+||||||+|||++|+|||++||++
T Consensus 392 ----------------------------------------------D-~vyiLafSlimLNTDlHNp~iK~kMT~~df~~ 424 (1024)
T COG5307 392 ----------------------------------------------D-SVYILAFSLIMLNTDLHNPNIKAKMTFEDFSK 424 (1024)
T ss_pred ----------------------------------------------c-eeehhHHHHHHHhccccChhhhccccHHHHHh
Confidence 1 13458999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCCCCC
Q psy17456 161 LNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPGK 198 (203)
Q Consensus 161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~~~ 198 (203)
|+||+++|++||++||+.+|++|+.+||++++.+.+..
T Consensus 425 N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~ 462 (1024)
T COG5307 425 NLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSE 462 (1024)
T ss_pred hhcccCCccccCHHHHHHHHHHHhhccccchhhccccc
Confidence 99999999999999999999999999999999887643
No 8
>KOG0930|consensus
Probab=100.00 E-value=3e-38 Score=275.10 Aligned_cols=127 Identities=51% Similarity=0.844 Sum_probs=117.7
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++|++...|++++|++|||+||.+||||||||+|||+||+||++||-|||++. |+.|
T Consensus 126 L~aFv~~Hef~dlnlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvf-qstD--------------------- 183 (395)
T KOG0930|consen 126 LHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVF-QSTD--------------------- 183 (395)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccc-ccCc---------------------
Confidence 578999999999999999999999999999999999999999999999999873 3322
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR 160 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~ 160 (203)
.++++||++|||||.|||||||+|.+++-||.
T Consensus 184 ------------------------------------------------tcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~ 215 (395)
T KOG0930|consen 184 ------------------------------------------------TCYVLSFAIIMLNTSLHNPNVKDKPTLERFIA 215 (395)
T ss_pred ------------------------------------------------eeeeeeehhhhhcccccCCCCCCCccHHHHHH
Confidence 13468999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCCCC
Q psy17456 161 LNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPG 197 (203)
Q Consensus 161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~~ 197 (203)
+|||||+|.|+|++.|.++|++|+.+++++|++....
T Consensus 216 MNrgineggdlpee~LrnlyeSi~~epFkIPeddgnd 252 (395)
T KOG0930|consen 216 MNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGND 252 (395)
T ss_pred HhhccccCCCCcHHHHHHHHHHhcCCCCCCCcccCCc
Confidence 9999999999999999999999999999999988654
No 9
>KOG0931|consensus
Probab=100.00 E-value=1.1e-37 Score=284.66 Aligned_cols=128 Identities=42% Similarity=0.715 Sum_probs=117.1
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|+|+++.+||++|.+|+|||+|.+.|++|||||+||||||+||++||.|||.+.-|
T Consensus 263 LdcvvdemDfssmelDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~q------------------------ 318 (627)
T KOG0931|consen 263 LDCVVDEMDFSSMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQ------------------------ 318 (627)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhh------------------------
Confidence 57999999999999999999999999999999999999999999999999986422
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccC--CCcCHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVK--SKMTKEQY 158 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk--~kMt~~~F 158 (203)
..|.|+|. .|+|+|||||||+|+|||| +||+++||
T Consensus 319 ------------------------------frnpDTIf-------------iLaFAIIlLNTDmySPnVKperkM~leDF 355 (627)
T KOG0931|consen 319 ------------------------------FRNPDTIF-------------ILAFAIILLNTDMYSPNVKPERKMKLEDF 355 (627)
T ss_pred ------------------------------ccCCCeeh-------------HHHHHHHHhcccccCCCCCHHHhhhHHHH
Confidence 13455543 4799999999999999999 89999999
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCC
Q psy17456 159 IRLNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANK 195 (203)
Q Consensus 159 i~n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~ 195 (203)
|||+||.++|.|||++.|.+||++|+.+|++..+++-
T Consensus 356 ikNLRGvDnGeDIpRell~GIYeRIqk~ELktndDHV 392 (627)
T KOG0931|consen 356 IKNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHV 392 (627)
T ss_pred HHhccCCCCcccCcHHHHHHHHHHHHHhhcccCcchH
Confidence 9999999999999999999999999999999888763
No 10
>KOG0932|consensus
Probab=99.94 E-value=2.1e-27 Score=221.48 Aligned_cols=120 Identities=32% Similarity=0.614 Sum_probs=108.9
Q ss_pred hhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhhh
Q psy17456 2 YAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACIF 81 (203)
Q Consensus 2 ~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~~ 81 (203)
.+|+..|+|.|++||.|||.||..|-|-||+|.-|||+..||.|||+|||+.. ++.
T Consensus 341 ~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~~CNP~~~--~S~---------------------- 396 (774)
T KOG0932|consen 341 EEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYFQCNPDIF--DSE---------------------- 396 (774)
T ss_pred HHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhccCcccc--ccc----------------------
Confidence 47999999999999999999999999999999999999999999999999964 121
Q ss_pred cchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHHH
Q psy17456 82 HLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRL 161 (203)
Q Consensus 82 ~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~n 161 (203)
||.+ .|+.+++|||||||.+||.+|||-+|||.|
T Consensus 397 ---------------------------------------------DgvH-tLTCAlmLLNTDLHGhniGKkMtcqdFI~N 430 (774)
T KOG0932|consen 397 ---------------------------------------------DGVH-TLTCALMLLNTDLHGHNIGKKMTCQDFITN 430 (774)
T ss_pred ---------------------------------------------cchh-HHHHHHHHHccccccccccccccHHHHHHH
Confidence 2222 368999999999999999999999999999
Q ss_pred hhcCCCCCCCCHHHHHHHHHHhhhCccccc
Q psy17456 162 NRGISDSQDLPEAYLSKIYDEIADQEIKMK 191 (203)
Q Consensus 162 ~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~ 191 (203)
+.|+|+|.|||.++|+.+|++|+.+.+.++
T Consensus 431 l~glndG~dF~kelLKaLy~SIKneklewA 460 (774)
T KOG0932|consen 431 LAGLNDGGDFPKELLKALYNSIKNEKLEWA 460 (774)
T ss_pred HhcccccCccHHHHHHHHHHHHhhhhhhhc
Confidence 999999999999999999999999966553
No 11
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=99.64 E-value=1.4e-16 Score=166.44 Aligned_cols=88 Identities=33% Similarity=0.573 Sum_probs=84.0
Q ss_pred CCCCCCCchHHHHhhhhchhhhhhhhhhhcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHH
Q psy17456 53 VGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYV 132 (203)
Q Consensus 53 ~~~q~~~d~~~~~~cL~G~r~ai~ia~~~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ 132 (203)
+++++++|++++.+||+|||.+||+||.|+|+++|++||.+|++||.|+ ++.+|+.||+++||+|+.||+++||||+
T Consensus 889 ~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~---~~~emk~Knv~Aik~ll~ia~~~Gn~L~ 965 (1780)
T PLN03076 889 VPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLH---SPADIKQKNIDAIKAIVSIADEDGNYLQ 965 (1780)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCC---ChhhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 3478899999999999999999999999999999999999999999998 6789999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q psy17456 133 LAYSIIMLTTD 143 (203)
Q Consensus 133 ls~s~ImLnTD 143 (203)
.+|..||.|..
T Consensus 966 ~sW~~IL~cIS 976 (1780)
T PLN03076 966 EAWEHILTCVS 976 (1780)
T ss_pred hHHHHHHHHHH
Confidence 99999999884
No 12
>KOG0929|consensus
Probab=99.51 E-value=9.1e-15 Score=149.42 Aligned_cols=88 Identities=52% Similarity=0.755 Sum_probs=84.7
Q ss_pred CCCCCCCchHHHHhhhhchhhhhhhhhhhcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHH
Q psy17456 53 VGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYV 132 (203)
Q Consensus 53 ~~~q~~~d~~~~~~cL~G~r~ai~ia~~~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ 132 (203)
+++|+++|..+++.||+|+|+|+|++|+|+|++.|+||+.++++||.||. +++|+.||+++||++++|+.++||++.
T Consensus 781 ~~~~~sdd~~~~n~cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~---~~e~k~kNi~aik~l~~ia~t~gn~l~ 857 (1514)
T KOG0929|consen 781 VGLQDSDDLEIANLCLDGFRLAISIASIFSMELGRDAFVQALARFTNLHA---PSEMKQKNIDAIKALLEIADTDGNKLF 857 (1514)
T ss_pred hhhhcCCccccccccccchhheeeehhhhcCCccccHHHHHHHHHHhccC---HHHHhHhhHHHHHHHHHHhhcccchhH
Confidence 46899999999999999999999999999999999999999999999984 589999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q psy17456 133 LAYSIIMLTTD 143 (203)
Q Consensus 133 ls~s~ImLnTD 143 (203)
.+|..|+.|++
T Consensus 858 ~sW~~Il~cis 868 (1514)
T KOG0929|consen 858 DSWLDILKCIS 868 (1514)
T ss_pred hHHHHHHHHHH
Confidence 99999999996
No 13
>KOG0928|consensus
Probab=92.27 E-value=0.5 Score=49.76 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=71.6
Q ss_pred CCCCCchHHHHhhhhchhhhhhhhhhhcchhhhHHHHHHHHHHhhhcCCCc-hh---HhhhhhH---HHHHHHhhhcCCc
Q psy17456 55 LQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSP-IT---EMKAKNI---ETIKTLINVAHTD 127 (203)
Q Consensus 55 ~q~~~d~~~~~~cL~G~r~ai~ia~~~~~~~er~afi~al~~ft~l~~~~~-~~---e~~~KNv---e~ik~l~~ia~~d 127 (203)
+..+++..+...|++|++...++++.+++..--|.-+..+++||.|..++. +. +....|. -|-.++..+++.-
T Consensus 756 Fd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~~ 835 (1386)
T KOG0928|consen 756 FDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANKF 835 (1386)
T ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhcc
Confidence 455667789999999999999999999999888889999999999875552 22 3333343 2566778899999
Q ss_pred hhHHHHHHHHHHHhh
Q psy17456 128 DTAYVLAYSIIMLTT 142 (203)
Q Consensus 128 g~~l~ls~s~ImLnT 142 (203)
|+++...|-.|+.++
T Consensus 836 Gd~i~~gw~nI~~~~ 850 (1386)
T KOG0928|consen 836 GDLIRVGWRNIVECL 850 (1386)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999998887
No 14
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=44.14 E-value=18 Score=25.64 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=22.1
Q ss_pred CCCcCHHHHHHHhhcCCCCCCCCHHHHHHHHHHhh
Q psy17456 150 KSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIA 184 (203)
Q Consensus 150 k~kMt~~~Fi~n~rgi~~~~d~~~~~L~~iY~~I~ 184 (203)
++|+|+++|++..|+|- | +..|..+-.++.
T Consensus 39 ~~kIsR~~fvr~lR~IV-G----D~lL~s~I~~lq 68 (70)
T PF12174_consen 39 KKKISREEFVRKLRQIV-G----DQLLRSAIKSLQ 68 (70)
T ss_pred HCCCCHHHHHHHHHHHH-H----HHHHHHHHHHhc
Confidence 57999999999999886 2 455655554443
No 15
>PF07867 DUF1654: Protein of unknown function (DUF1654); InterPro: IPR012449 This entry is represented by Bacteriophage F116 (Pseudomonas phage F116), Orf28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of proteins from the Pseudomonadaceae.
Probab=43.07 E-value=16 Score=26.38 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.5
Q ss_pred cCCCCCchH-HHHHHHHHHHHH
Q psy17456 25 GFRLPGEAQ-KIDRLMEKFASR 45 (203)
Q Consensus 25 ~f~LPgEsQ-~IdRi~e~Fa~~ 45 (203)
-+|+|+|++ -.++||+.+++.
T Consensus 29 I~R~~~e~~~~W~~vl~~i~Et 50 (73)
T PF07867_consen 29 IHRLDDESDEDWEQVLEEIAET 50 (73)
T ss_pred EEECCCCCHHHHHHHHHHHhcC
Confidence 478999996 789999998763
No 16
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=32.61 E-value=1.4e+02 Score=19.64 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=16.3
Q ss_pred hhhhhhhhhhcchhh-hHHHHHHHHHHhhh
Q psy17456 72 RCAIRIACIFHLTLE-RNAYVQALARFTLL 100 (203)
Q Consensus 72 r~ai~ia~~~~~~~e-r~afi~al~~ft~l 100 (203)
|.|+|.|+...+.-. |...-.-..+||++
T Consensus 9 rsairras~ie~~~qar~~lq~lfvnf~li 38 (52)
T TIGR01294 9 RSAIRRASTIEMPQQARQNLQNLFINFCLI 38 (52)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 667777777776532 33333334456654
No 17
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=30.51 E-value=1.4e+02 Score=25.67 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhcCC-------C----CCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhh
Q psy17456 12 GRDLVSALRYFLEGFR-------L----PGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCL 68 (203)
Q Consensus 12 ~~~l~~ALR~fl~~f~-------L----PgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL 68 (203)
++=+++|.+.++.... - +.+--.|.-|.+.+.+ +.+.||.... +.+.++|+
T Consensus 50 ~~vf~eaV~~~~~~~E~~~~~~~~~~~~~~~~~ai~ei~~~L~~-fv~~npkAWa-----p~i~~Wsl 111 (213)
T PF14837_consen 50 GLVFDEAVHLYLSPKENDAQNNKQQQDEADLDEAIQEIHDVLSR-FVEANPKAWA-----PLISAWSL 111 (213)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCCccHHHHHHHHHHHHHH-HHhcCCcccH-----HHHHHHHH
Confidence 3446677777666554 1 1222344555555555 6777877532 34555554
No 18
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=29.00 E-value=26 Score=23.32 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHhcCCCCCc
Q psy17456 10 FAGRDLVSALRYFLEGFRLPGE 31 (203)
Q Consensus 10 F~~~~l~~ALR~fl~~f~LPgE 31 (203)
|.|.++++|+...+..+.+|-+
T Consensus 2 ~~gkt~eeAi~~A~~~l~~~~~ 23 (52)
T PF14804_consen 2 FEGKTVEEAIEKALKELGVPRE 23 (52)
T ss_dssp EEESSHHHHHHHHHHHTT--GG
T ss_pred eeECCHHHHHHHHHHHhCCChH
Confidence 5688999999999999999865
No 19
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=28.50 E-value=1.7e+02 Score=19.26 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=16.1
Q ss_pred hhhhhhhhhhcchhh-hHHHHHHHHHHhhh
Q psy17456 72 RCAIRIACIFHLTLE-RNAYVQALARFTLL 100 (203)
Q Consensus 72 r~ai~ia~~~~~~~e-r~afi~al~~ft~l 100 (203)
|.|+|.|+...+... |...-.-..+||++
T Consensus 9 rsairrastiev~~qa~qnlqelfvnfcli 38 (52)
T PF04272_consen 9 RSAIRRASTIEVPQQARQNLQELFVNFCLI 38 (52)
T ss_dssp HHHHHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 667777777766532 33333334456654
No 20
>PRK10945 gene expression modulator; Provisional
Probab=26.17 E-value=1e+02 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=18.9
Q ss_pred CCcCHHHHHHHhhcCCCCCCCCHHHHHHHHHHh
Q psy17456 151 SKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEI 183 (203)
Q Consensus 151 ~kMt~~~Fi~n~rgi~~~~d~~~~~L~~iY~~I 183 (203)
..||+++|.-.+|.|.. .+-|+++|+..
T Consensus 4 ~~Mtk~dyL~~fRrcss-----~eTLEkvie~~ 31 (72)
T PRK10945 4 KPLTKTDYLMRLRRCQT-----IDTLERVIEKN 31 (72)
T ss_pred ccccHHHHHHHHHhcCc-----HHHHHHHHHHh
Confidence 45899999999998762 34455555443
No 21
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=24.95 E-value=1.1e+02 Score=21.86 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=19.5
Q ss_pred cCHHHHHHHhhcCCCCCCCCHHHHHHHHHHhh
Q psy17456 153 MTKEQYIRLNRGISDSQDLPEAYLSKIYDEIA 184 (203)
Q Consensus 153 Mt~~~Fi~n~rgi~~~~d~~~~~L~~iY~~I~ 184 (203)
||+++|.=.+|.|+ ..+-|+++|+.++
T Consensus 1 mtk~eyLlkfRkcs-----s~eTLEkv~e~~~ 27 (71)
T PRK10391 1 MTVQDYLLKFRKIS-----SLESLEKLFDHLN 27 (71)
T ss_pred CcHHHHHHHHHhcC-----cHHHHHHHHHHhh
Confidence 78999999999776 3455666666554
No 22
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.88 E-value=1.3e+02 Score=18.01 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCCC---chHHHHHHHHHH
Q psy17456 16 VSALRYFLEGFRLPG---EAQKIDRLMEKF 42 (203)
Q Consensus 16 ~~ALR~fl~~f~LPg---EsQ~IdRi~e~F 42 (203)
..-||..|...-||. =++-|+||.+.+
T Consensus 6 v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 6 VAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356899999999985 346889998764
No 23
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=24.87 E-value=86 Score=23.13 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.0
Q ss_pred cCHHHHHHHhhcCCCC
Q psy17456 153 MTKEQYIRLNRGISDS 168 (203)
Q Consensus 153 Mt~~~Fi~n~rgi~~~ 168 (203)
|+.+++|+.++|+..+
T Consensus 55 ~~~~~ii~~L~gi~~~ 70 (95)
T PF12637_consen 55 VPPEEIIDQLRGIRCG 70 (95)
T ss_pred CCHHHHHHHhcCCCCC
Confidence 8899999999998754
No 24
>PF14904 FAM86: Family of unknown function
Probab=24.73 E-value=1.1e+02 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=21.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCCC
Q psy17456 29 PGEAQKIDRLMEKFASRYCENNPNVG 54 (203)
Q Consensus 29 PgEsQ~IdRi~e~Fa~~y~~~Np~~~ 54 (203)
|.|+---+++++.|..+|+.+.|-..
T Consensus 3 ~e~~~~~~~~l~~f~~~FlA~~~l~s 28 (100)
T PF14904_consen 3 PEENAETEDLLQEFQRRFLAMRPLRS 28 (100)
T ss_pred ccccccHHHHHHHHHHHHhhcccccC
Confidence 67777889999999999999987443
No 25
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=24.22 E-value=1.4e+02 Score=26.70 Aligned_cols=46 Identities=33% Similarity=0.483 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhc---CCCCCchH-----------------HHHHHHHHHHHH------HHHhCCCCCCCCC
Q psy17456 13 RDLVSALRYFLEG---FRLPGEAQ-----------------KIDRLMEKFASR------YCENNPNVGLQNC 58 (203)
Q Consensus 13 ~~l~~ALR~fl~~---f~LPgEsQ-----------------~IdRi~e~Fa~~------y~~~Np~~~~q~~ 58 (203)
..||.|+-.||.. -.+|++++ +-.|+-+.+-+| ||..||.-.+++-
T Consensus 111 ~~ID~AIsrFL~l~p~c~l~~~~~~~~~~~~~~~~q~~L~~qq~rL~~kL~ERLGYlgvyYkr~p~~f~~~l 182 (283)
T PF07688_consen 111 YNIDQAISRFLRLGPACSLPDQSASVSDPIADESNQSFLLLQQRRLAEKLKERLGYLGVYYKRNPQQFLRNL 182 (283)
T ss_dssp HHHHHHHHHHHHH-S--BTTT--S------------TTCCCHHHHHHHHHHHHHEEEEEEE---HHHCCCCC
T ss_pred HHHHHHHHHHHhhCCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHhhheeeEeccCHHHHHHhC
Confidence 4589999999975 55676653 677888888888 4677887766654
No 26
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=23.46 E-value=1.2e+02 Score=22.04 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=41.2
Q ss_pred HHhhccCCCccCCCcCHHHHHHHhhcCCCCCCCCHHHHHHHHHHhhhCcc
Q psy17456 139 MLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQEI 188 (203)
Q Consensus 139 mLnTDlHn~~vk~kMt~~~Fi~n~rgi~~~~d~~~~~L~~iY~~I~~~ei 188 (203)
-|.-++-+.+.++.-++.++|+....+- ++.+|.+..++|-..|....+
T Consensus 17 kLA~sv~~adlqdE~~vR~lIk~vs~~a-n~~Vs~~~ed~IV~~I~~~~~ 65 (79)
T PF14069_consen 17 KLANSVQKADLQDEKKVRQLIKQVSQIA-NKPVSKEQEDQIVQAIINQKI 65 (79)
T ss_pred HHHHhcchhhcccHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhCCC
Confidence 3445666777788899999999987765 789999999999999999887
No 27
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=22.84 E-value=1.6e+02 Score=21.26 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCCC---chHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy17456 18 ALRYFLEGFRLPG---EAQKIDRLMEKFASRYCENNPNVGLQN 57 (203)
Q Consensus 18 ALR~fl~~f~LPg---EsQ~IdRi~e~Fa~~y~~~Np~~~~q~ 57 (203)
+|+.....|+.-| |.+-..++|..+..+=+.--|...+++
T Consensus 15 ~l~~~~k~~k~kgkghE~~dL~~ll~~Yq~W~h~LfPk~~F~d 57 (83)
T PF07962_consen 15 YLRKNFKKFKFKGKGHEYEDLRRLLQFYQLWAHRLFPKASFED 57 (83)
T ss_pred HHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3444448888875 888999999988766566668776543
No 28
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.
Probab=21.30 E-value=1.6e+02 Score=20.67 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCCchH---HHHHHHHHHHHHHHHh
Q psy17456 17 SALRYFLEGFRLPGEAQ---KIDRLMEKFASRYCEN 49 (203)
Q Consensus 17 ~ALR~fl~~f~LPgEsQ---~IdRi~e~Fa~~y~~~ 49 (203)
+.|-.+..++.=|++.+ .|+|+|..|-.+.|+.
T Consensus 13 elLe~y~~~L~~~~D~~lr~~ierli~ifkS~LF~A 48 (64)
T PF09058_consen 13 ELLEEYHNKLSRPEDEELRTAIERLINIFKSRLFQA 48 (64)
T ss_dssp HHHHHHHHTTSSSS-CCHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777788764 8999999999998876
No 29
>PF13113 DUF3970: Protein of unknown function (DUF3970)
Probab=20.59 E-value=49 Score=22.96 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=18.2
Q ss_pred cCCCCCchHHHHHHHHHHHH
Q psy17456 25 GFRLPGEAQKIDRLMEKFAS 44 (203)
Q Consensus 25 ~f~LPgEsQ~IdRi~e~Fa~ 44 (203)
.+||-|--+.|+++|+.|++
T Consensus 3 qVRl~G~~eEi~~fi~~~~~ 22 (60)
T PF13113_consen 3 QVRLSGTKEEIEEFIKSFEK 22 (60)
T ss_pred eEEecCCHHHHHHHHHhhhh
Confidence 47899989999999999988
No 30
>PHA02885 putative interleukin binding protein; Provisional
Probab=20.38 E-value=61 Score=25.18 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=31.0
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCCCCC
Q psy17456 158 YIRLNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPGK 198 (203)
Q Consensus 158 Fi~n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~~~ 198 (203)
|+.|+.|.++|+|...+.=.++|.--+ |+-+.+....|+
T Consensus 78 f~enl~g~~egqd~t~algdd~ykhtr--elniss~dytgk 116 (135)
T PHA02885 78 FIENLEGANEGQDNTFALGDDCYKHTR--ELNISSADYTGK 116 (135)
T ss_pred eeecccccccCccchhhhhHHHHhhhH--hcccccccccCC
Confidence 889999999999999999999998654 555555555554
No 31
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=20.36 E-value=3.1e+02 Score=21.77 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH
Q psy17456 12 GRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCE 48 (203)
Q Consensus 12 ~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~ 48 (203)
|.+..+.++.++..+..+-+...++++.+.|.+.|.+
T Consensus 42 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (213)
T TIGR01449 42 GNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEE 78 (213)
T ss_pred cccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHH
Confidence 4455555566555554444445567777777766554
No 32
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=20.33 E-value=50 Score=34.71 Aligned_cols=67 Identities=25% Similarity=0.336 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHHHHHHhCCC--CCCCCCCchHHHHhhhhchhhhhhhhhhhcchhhhHHHHHHHHHHhhhcCCC
Q psy17456 31 EAQKIDRLMEKFASRYCENNPN--VGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANS 104 (203)
Q Consensus 31 EsQ~IdRi~e~Fa~~y~~~Np~--~~~q~~~d~~~~~~cL~G~r~ai~ia~~~~~~~er~afi~al~~ft~l~~~~ 104 (203)
+++..+++.-.|-..|+..--. -.++.++....++.|.. +|+.|++...|++|+.+++.+|.++..+
T Consensus 491 ~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~-------ia~~f~~n~p~~~~~~~~s~~t~l~~~S 559 (1024)
T COG5307 491 DATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTR-------IAANFDFNDPRDAFLESLSEFTTLINSS 559 (1024)
T ss_pred hHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccc-------hhhcceecchhHHHHHHhhccCCccccC
Confidence 3366666655555554432111 12455666666677765 8999999999999999999999987533
Done!