Query psy17456
Match_columns 203
No_of_seqs 136 out of 822
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 22:56:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 100.0 4.2E-47 1.4E-51 320.4 13.9 128 1-197 83-211 (211)
2 1r8s_E ARNO; protein transport 100.0 6.8E-47 2.3E-51 317.5 13.6 125 1-195 77-201 (203)
3 1ku1_A ARF guanine-nucleotide 100.0 8.4E-47 2.9E-51 322.2 13.2 140 1-195 88-227 (230)
4 1xsz_A Guanine nucleotide exch 100.0 8.2E-43 2.8E-47 312.8 13.8 124 1-194 75-200 (356)
5 2r09_A Cytohesin-3; autoinhibi 100.0 4.4E-40 1.5E-44 294.1 13.5 125 1-195 79-203 (347)
6 1fjk_A Cardiac phospholamban; 30.7 85 0.0029 19.8 4.2 29 72-100 9-38 (52)
7 1jw2_A Hemolysin expression mo 27.3 70 0.0024 22.0 3.7 28 152-184 5-32 (72)
8 2a6t_A SPAC19A8.12; alpha/beta 22.6 64 0.0022 26.8 3.4 45 6-50 4-53 (271)
9 1gp8_A Protein (scaffolding pr 22.2 32 0.0011 21.0 1.1 19 112-130 8-26 (40)
10 2qkl_B SPAC19A8.12 protein, SP 21.7 70 0.0024 23.0 3.0 42 8-49 1-47 (95)
11 3kxy_A Exoenzyme S synthesis p 20.2 61 0.0021 24.8 2.5 22 32-55 4-25 (133)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=100.00 E-value=4.2e-47 Score=320.36 Aligned_cols=128 Identities=73% Similarity=1.116 Sum_probs=112.7
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCC-CCCCCchHHHHhhhhchhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVG-LQNCDDTEIASLCLEGIRCAIRIAC 79 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~-~q~~~d~~~~~~cL~G~r~ai~ia~ 79 (203)
|++|+++|||+|++||+|||.||.+|+||||+|+||||||+||++||+|||..+ +.+
T Consensus 83 L~~yv~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s---------------------- 140 (211)
T 3ltl_A 83 MYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFAS---------------------- 140 (211)
T ss_dssp HHHHHHTSCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSS----------------------
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCcCCCchhHHHHHHHHHHHHHHHhCCCCCCcCC----------------------
Confidence 579999999999999999999999999999999999999999999999999842 221
Q ss_pred hhcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHH
Q psy17456 80 IFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYI 159 (203)
Q Consensus 80 ~~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi 159 (203)
.|+ +++++||+||||||||||+||+|||+++||
T Consensus 141 ----------------------------------~D~-------------~~iLaySiImLNTDlHn~~vk~kMt~~~Fi 173 (211)
T 3ltl_A 141 ----------------------------------ADT-------------AYVLAYSIIMLTTDLHSPQVKNKMTKEQYI 173 (211)
T ss_dssp ----------------------------------HHH-------------HHHHHHHHHHHHHHHTCTTCCSCCCHHHHH
T ss_pred ----------------------------------HHH-------------HHHHHHHHHHHhhhhcCccccCCCCHHHHH
Confidence 111 235899999999999999999999999999
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCCCC
Q psy17456 160 RLNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPG 197 (203)
Q Consensus 160 ~n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~~ 197 (203)
+|+||+|+|+|||+++|++||++|+.+||+|+++.+.|
T Consensus 174 ~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~~~~ 211 (211)
T 3ltl_A 174 KMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKETG 211 (211)
T ss_dssp HHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC------
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCccCCCCCCCC
Confidence 99999999999999999999999999999999988764
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=100.00 E-value=6.8e-47 Score=317.53 Aligned_cols=125 Identities=51% Similarity=0.876 Sum_probs=114.1
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++|+++|||+|++||+|||.||.+|+||||+|+||||||+||++||+|||.+. .+
T Consensus 77 l~~y~~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f-~s----------------------- 132 (203)
T 1r8s_E 77 LHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVF-QS----------------------- 132 (203)
T ss_dssp HHHHHHTCCCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSS-SC-----------------------
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhCCccc-CC-----------------------
Confidence 579999999999999999999999999999999999999999999999999853 11
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR 160 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~ 160 (203)
.|+ +++++||+||||||||||+||+|||+++||+
T Consensus 133 ---------------------------------~D~-------------~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 133 ---------------------------------TDT-------------CYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp ---------------------------------HHH-------------HHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred ---------------------------------cch-------------HHHHHHHHHHhcccccCcccccccCHHHHHH
Confidence 111 2358999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCC
Q psy17456 161 LNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANK 195 (203)
Q Consensus 161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~ 195 (203)
|+||+|+|+|+|+++|++||++|+.+||+|++++.
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HhhcccCCCCCCHHHHHHHHHHHHhCCCCCccCcC
Confidence 99999999999999999999999999999998764
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=100.00 E-value=8.4e-47 Score=322.25 Aligned_cols=140 Identities=39% Similarity=0.697 Sum_probs=113.1
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++|+++|||+|++||+|||.||.+|+||||||+||||||+||++||+|||..+....+..+ +.+ ..+
T Consensus 88 L~~yv~~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~------~~~------~~~ 155 (230)
T 1ku1_A 88 LNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAE------DDI------STV 155 (230)
T ss_dssp HHHHHHTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCT------TCG------GGC
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHhCCCCccccccccc------ccc------ccc
Confidence 57999999999999999999999999999999999999999999999999853211000000 000 000
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR 160 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~ 160 (203)
| .|.|+ +++++||+||||||||||+||+|||+++||+
T Consensus 156 f------------------------------~s~D~-------------vyvLaySiImLNTDlHnp~vk~kMT~~~Fik 192 (230)
T 1ku1_A 156 Q------------------------------PDADS-------------VFILSYSIIMLNTDLHNPQVKEHMSFEDYSG 192 (230)
T ss_dssp C------------------------------CCHHH-------------HHHHHHHHHHHHHHHTCTTCSSCCCHHHHHH
T ss_pred c------------------------------CCchH-------------HHHHHHHHHHHhhhhccccccCCCCHHHHHH
Confidence 0 11222 3458999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCC
Q psy17456 161 LNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANK 195 (203)
Q Consensus 161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~ 195 (203)
|+||+|+|+|||++||++||++|+.+||+||+++.
T Consensus 193 N~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~ 227 (230)
T 1ku1_A 193 NLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHH 227 (230)
T ss_dssp HTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HhhcccCCCCCCHHHHHHHHHHHHhCcccCCccCC
Confidence 99999999999999999999999999999999875
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=100.00 E-value=8.2e-43 Score=312.83 Aligned_cols=124 Identities=41% Similarity=0.736 Sum_probs=113.1
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++|+++|||+|++||+|||.||.+|+||||+|+||||||+||++||+|||... .
T Consensus 75 L~~yv~~fdF~g~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f-~------------------------ 129 (356)
T 1xsz_A 75 LKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVV-S------------------------ 129 (356)
T ss_dssp HHHHHHTSCCTTSCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTS-S------------------------
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHhCCCcc-C------------------------
Confidence 579999999999999999999999999999999999999999999999999753 1
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccC--CCcCHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVK--SKMTKEQY 158 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk--~kMt~~~F 158 (203)
|.|+ +++++||+||||||||||+|| +|||+++|
T Consensus 130 --------------------------------s~D~-------------~yvLaySiImLNTDLHNpnvk~k~kMT~~dF 164 (356)
T 1xsz_A 130 --------------------------------NADA-------------AYLLAFQTIMLNTDLHNPSIPEKNKMTVDGL 164 (356)
T ss_dssp --------------------------------SHHH-------------HHHHHHHHHHHHHHHHCTTSCGGGSCCHHHH
T ss_pred --------------------------------ChhH-------------HHHHHHHHHHhcccccCccccccCCCCHHHH
Confidence 1111 235899999999999999998 89999999
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHhhhCccccccCC
Q psy17456 159 IRLNRGISDSQDLPEAYLSKIYDEIADQEIKMKSAN 194 (203)
Q Consensus 159 i~n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~ 194 (203)
|+|+||+|+|+|||+++|++||++|+.+||+++...
T Consensus 165 ikN~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 200 (356)
T 1xsz_A 165 KRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVK 200 (356)
T ss_dssp HHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCS
T ss_pred HHHhhcccCCCCCCHHHHHHHHHHHHhCCCccCCcc
Confidence 999999999999999999999999999999997543
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=100.00 E-value=4.4e-40 Score=294.15 Aligned_cols=125 Identities=50% Similarity=0.841 Sum_probs=114.5
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI 80 (203)
Q Consensus 1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~ 80 (203)
|++|+++|||.|++||+|||.||.+|+||||+|+||||||+||++||+|||.+. .+
T Consensus 79 l~~~~~~~~f~~~~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~-~~----------------------- 134 (347)
T 2r09_A 79 LQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVF-QS----------------------- 134 (347)
T ss_dssp HHHHHHTSCCTTCCHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSS-SC-----------------------
T ss_pred HHHHHHhcCcCCCCHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHHHhCCccc-CC-----------------------
Confidence 579999999999999999999999999999999999999999999999999853 11
Q ss_pred hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456 81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR 160 (203)
Q Consensus 81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~ 160 (203)
.|+ .++++||+||||||+|||++|+|||+++||+
T Consensus 135 ---------------------------------~d~-------------~~~l~~siimLntdlhn~~~k~kmt~~~fi~ 168 (347)
T 2r09_A 135 ---------------------------------TDT-------------CYVLSFAIIMLNTSLHNHNVRDKPTAERFIT 168 (347)
T ss_dssp ---------------------------------HHH-------------HHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred ---------------------------------hhH-------------HHHHHHHHHHHhhhhhcccccccCCHHHHHH
Confidence 111 2358999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCC
Q psy17456 161 LNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANK 195 (203)
Q Consensus 161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~ 195 (203)
|+||+++|+++|+++|+.+|++|+.+||.++++..
T Consensus 169 n~~~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 169 MNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred HhhcccCCCCCCHHHHHHHHHhhccCccccccccc
Confidence 99999999999999999999999999999987643
No 6
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=30.66 E-value=85 Score=19.80 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=16.6
Q ss_pred hhhhhhhhhhcchhh-hHHHHHHHHHHhhh
Q psy17456 72 RCAIRIACIFHLTLE-RNAYVQALARFTLL 100 (203)
Q Consensus 72 r~ai~ia~~~~~~~e-r~afi~al~~ft~l 100 (203)
|.|+|.|+...+... |...-.-..+||++
T Consensus 9 rsairras~ie~~~qarqnlqelfvnfcli 38 (52)
T 1fjk_A 9 RSAIRRASTIEMPQQARQNLQNLFINFCLI 38 (52)
T ss_dssp HHHHHHHHSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 667787777776633 33333334456654
No 7
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=27.25 E-value=70 Score=21.98 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=20.4
Q ss_pred CcCHHHHHHHhhcCCCCCCCCHHHHHHHHHHhh
Q psy17456 152 KMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIA 184 (203)
Q Consensus 152 kMt~~~Fi~n~rgi~~~~d~~~~~L~~iY~~I~ 184 (203)
.||++||.-.+|.|+ ..+-|+++|+..+
T Consensus 5 ~Mtk~d~L~k~Rrc~-----s~eTLEkv~e~~~ 32 (72)
T 1jw2_A 5 PLTKTDYLMRLRRCQ-----TIDTLERVIEKNK 32 (72)
T ss_dssp TCCHHHHHHHHHTSS-----CHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcC-----cHHHHHHHHHHhh
Confidence 399999999999876 3455666665443
No 8
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=22.60 E-value=64 Score=26.76 Aligned_cols=45 Identities=24% Similarity=0.390 Sum_probs=35.7
Q ss_pred hcCCCCCCCHHHHHHHHHhcCCC--C-CchHHHHHHHHHH--HHHHHHhC
Q psy17456 6 DQMQFAGRDLVSALRYFLEGFRL--P-GEAQKIDRLMEKF--ASRYCENN 50 (203)
Q Consensus 6 ~~fdF~~~~l~~ALR~fl~~f~L--P-gEsQ~IdRi~e~F--a~~y~~~N 50 (203)
....|.+++++++|-.++.+|-+ | .|-+.++||.=.. |..||.+.
T Consensus 4 ~~~~~~~~~~~~~l~dl~~rfi~n~p~~~~~~~~~~~f~ie~a~wfy~d~ 53 (271)
T 2a6t_A 4 GSMSFTNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDF 53 (271)
T ss_dssp --CCCSCCCTHHHHHHHHHHHTTTSCGGGTTCHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCHHHHHHHHHHHHhhcCCHHHhccHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999986 4 5667899998777 77777653
No 9
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=22.23 E-value=32 Score=20.98 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=17.4
Q ss_pred hhHHHHHHHhhhcCCchhH
Q psy17456 112 KNIETIKTLINVAHTDDTA 130 (203)
Q Consensus 112 KNve~ik~l~~ia~~dg~~ 130 (203)
-|+++|...+.+|-++|+|
T Consensus 8 d~I~aiEQqiyvA~seGd~ 26 (40)
T 1gp8_A 8 ANKDAIRKQMDAAASKGDV 26 (40)
T ss_dssp HHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHhcCCH
Confidence 4889999999999999998
No 10
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=21.73 E-value=70 Score=22.96 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=31.6
Q ss_pred CCCCCCCHHHHHHHHHhcCCC--CC-chHHHHHHHHHH--HHHHHHh
Q psy17456 8 MQFAGRDLVSALRYFLEGFRL--PG-EAQKIDRLMEKF--ASRYCEN 49 (203)
Q Consensus 8 fdF~~~~l~~ALR~fl~~f~L--Pg-EsQ~IdRi~e~F--a~~y~~~ 49 (203)
+.|++.+++++|-.++.+|-+ |. |-+.++||.=.. |..||.+
T Consensus 1 ~~~~~~~~~~iLdDL~~RFIiN~P~eel~s~eRl~FqiEeA~WfY~D 47 (95)
T 2qkl_B 1 MSFTNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYED 47 (95)
T ss_dssp -CCTTCCHHHHHHHHHHHHTTTCCGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHcCCHHHhhhHHHHHHHHHhheeehcc
Confidence 468999999999999999985 65 556799975333 5566666
No 11
>3kxy_A Exoenzyme S synthesis protein C; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=20.19 E-value=61 Score=24.80 Aligned_cols=22 Identities=36% Similarity=0.726 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCC
Q psy17456 32 AQKIDRLMEKFASRYCENNPNVGL 55 (203)
Q Consensus 32 sQ~IdRi~e~Fa~~y~~~Np~~~~ 55 (203)
.|+|++|+..||.+| .-|.+.+
T Consensus 4 ~~~Vn~vL~qFa~qi--gLP~l~L 25 (133)
T 3kxy_A 4 TSKVNRLLAEFAGRI--GLPSLSL 25 (133)
T ss_dssp HHHHHHHHHHHHHHH--TCSCCCC
T ss_pred HHHHHHHHHHHHHHc--CCCceeE
Confidence 589999999999998 2455443
Done!