RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17456
(203 letters)
>gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S. cerevisiae
SEC7 gene product. The Sec7 domain is the central domain
of the guanine-nucleotide-exchange factors (GEFs) of the
ADP-ribosylation factor family of small GTPases (ARFs) .
It carries the exchange factor activity.
Length = 185
Score = 106 bits (267), Expect = 4e-29
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 128 DTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQE 187
D AY LAYSIIML TDLH+P VK KMT E +I+ RGI+D +D P +L ++YD I + E
Sbjct: 125 DAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKNNE 184
Query: 188 I 188
I
Sbjct: 185 I 185
Score = 96.5 bits (241), Expect = 2e-25
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCD 59
++ +VD F+G L ALR FL+ FRLPGEAQKIDRL+EKF+ RYCE NP + + D
Sbjct: 67 LHEFVDLFDFSGLRLDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSAD 125
>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain. The Sec7 domain is a
guanine-nucleotide-exchange-factor (GEF) for the
pfam00025 family.
Length = 188
Score = 105 bits (263), Expect = 2e-28
Identities = 37/63 (58%), Positives = 48/63 (76%)
Query: 126 TDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIAD 185
+ D Y+LAYSIIML TDLH+P VK+KMTKE +I+ RGI+D +D PE +L +IYD I
Sbjct: 126 SADAVYILAYSIIMLNTDLHNPNVKNKMTKEDFIKNLRGINDGKDFPEEFLEEIYDSIKS 185
Query: 186 QEI 188
+EI
Sbjct: 186 EEI 188
Score = 94.6 bits (236), Expect = 2e-24
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCD 59
+ YVD F G L ALR FL FRLPGEAQKIDR++E F+ RY E NP+ ++ D
Sbjct: 70 LKEYVDLFDFKGLPLDEALRLFLSSFRLPGEAQKIDRILEAFSERYYECNPSTVFKSAD 128
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor
(ARF-GEF); Provisional.
Length = 1780
Score = 109 bits (274), Expect = 9e-28
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 128 DTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQE 187
DTAYVLAYS+IML TD H+P VK+KM+ + +IR NRGI D +DLPE ++ +Y+ I+ E
Sbjct: 738 DTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNE 797
Query: 188 IKMKSANKPGKQKSP 202
IKMK + +QK
Sbjct: 798 IKMKEDDLVPQQKQS 812
Score = 88.0 bits (218), Expect = 3e-20
Identities = 34/53 (64%), Positives = 40/53 (75%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNV 53
M+AYVD F G + A+R FL+GFRLPGEAQKIDR+MEKFA RYC+ NP
Sbjct: 681 MHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKA 733
Score = 66.0 bits (161), Expect = 8e-13
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 53 VGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAK 112
V L DD + CLEG R AI + + + R+A+V +LA+FT L +SP ++K K
Sbjct: 889 VPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSL--HSP-ADIKQK 945
Query: 113 NIETIKTLINVAHTD 127
NI+ IK ++++A D
Sbjct: 946 NIDAIKAIVSIADED 960
>gnl|CDD|214569 smart00222, Sec7, Sec7 domain. Domain named after the S.
cerevisiae SEC7 gene product, which is required for
proper protein transport through the Golgi. The domain
facilitates guanine nucleotide exchange on the small
GTPases, ARFs (ADP ribosylation factors).
Length = 189
Score = 97.4 bits (243), Expect = 1e-25
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 128 DTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQE 187
D AY LAYS+IML TDLH+P VK KMT E +I+ RG +D +DLP +L ++YD I + E
Sbjct: 129 DAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSIKNNE 188
Query: 188 I 188
I
Sbjct: 189 I 189
Score = 89.3 bits (222), Expect = 2e-22
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNV 53
++A+VD F+ +DL ALR FLE FRLPGEAQKIDRL+E F+SRYCE NP V
Sbjct: 70 LHAFVDLFDFSAKDLDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPGV 122
>gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction
only].
Length = 1024
Score = 101 bits (254), Expect = 3e-25
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 128 DTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQE 187
D+ Y+LA+S+IML TDLH+P +K+KMT E + + RG + +D PE +L + YD I +E
Sbjct: 392 DSVYILAFSLIMLNTDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKE 451
Query: 188 IKMKSANKP 196
I + +
Sbjct: 452 IVLPEEHHS 460
Score = 78.2 bits (193), Expect = 5e-17
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCD 59
+ ++ F G D+ ALR L+ FRLPGEAQ+IDR++E F+ +Y +NP D
Sbjct: 334 LREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPD 392
>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger. This domain appears to be
a zinc finger. The alignment shows four conserved
cysteine residues and a conserved tryptophan. It was
first identified by, and is predicted to be a "highly
specialised mononuclear four-cysteine zinc
finger...that plays a role in DNA binding and/or
promoting protein-protein interactions in complicated
eukaryotic processes including...chromatin methylation
status and early embryonic development." Weak homology
to pfam00628 further evidences these predictions
(personal obs: C Yeats). Twelve different
CW-domain-containing protein subfamilies are described,
with different subfamilies being characteristic of
vertebrates, higher plants and other animals in which
these domain is found.
Length = 50
Score = 27.4 bits (61), Expect = 0.96
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 27 RLPGEAQKI-DRLMEKFASRYCENNPNVGLQNCDDTE 62
+LP E ++I +L + + +C NP+ +CDD E
Sbjct: 14 KLPEEYEEIRSKLPDPW---FCSMNPDPAYNSCDDPE 47
>gnl|CDD|236131 PRK07920, PRK07920, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 298
Score = 29.1 bits (66), Expect = 1.5
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Query: 13 RDLV-----SALRYFLEGFRLPG 30
LV S RY+ E FRLP
Sbjct: 58 DALVRAAMRSYARYWREAFRLPS 80
>gnl|CDD|131696 TIGR02648, rep_term_tus, DNA replication terminus site-binding
protein. Members of this protein family are found on
the main chromosomes of a number of the
Gammaproteobacteria; this model excludes related plasmid
proteins, which score between trusted and noise cutoffs.
This protein, DNA replication terminus site-binding
protein, binds specific DNA sites near the replication
terminus to arrest the DNA replication fork [DNA
metabolism, DNA replication, recombination, and repair].
Length = 300
Score = 28.3 bits (63), Expect = 3.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 118 KTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRL-NRGISDSQDLPEAYL 176
K +I D+ +LA L L+S + + T+EQ+ L R I D LPE +
Sbjct: 166 KHIIKNVTRDE---ILA----QLEKSLNSGRAVAPYTREQWQELVEREIQDIAALPEDAV 218
Query: 177 SKIYDEIADQEI 188
KI + Q I
Sbjct: 219 LKIKRPVKVQPI 230
>gnl|CDD|226076 COG3546, COG3546, Mn-containing catalase [Inorganic ion transport
and metabolism].
Length = 277
Score = 27.7 bits (62), Expect = 4.3
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 2 YAYVDQMQFAGRD--LVSALRYFLEGFRLPGEAQKIDRLM 39
A + Q Q G L +A++Y +GF + A+ D LM
Sbjct: 21 LAKLLQEQLGGAFGELSAAMQYLFQGFNVRD-AKYKDLLM 59
>gnl|CDD|218411 pfam05067, Mn_catalase, Manganese containing catalase. Catalases
are important antioxidant metalloenzymes that catalyze
disproportionation of hydrogen peroxide, forming
dioxygen and water. Two families of catalases are
known, one having a heme cofactor, and this family that
is a structurally distinct family containing non-heme
manganese.
Length = 283
Score = 27.2 bits (60), Expect = 6.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 2 YAYVDQMQFAGRD--LVSALRYFLEGFRLPGEAQKIDRLME 40
A Q Q G+ L +A+RY +GF + + D LM+
Sbjct: 21 LAKKLQEQLGGQFGELSAAMRYLFQGFNTRDKGKYKDLLMD 61
>gnl|CDD|224506 COG1590, COG1590, Uncharacterized conserved protein [Function
unknown].
Length = 208
Score = 26.5 bits (59), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 96 RFTLLTANSPITEMKAKNIETIKTLINVA 124
+ L PI + A+++E K L+N+A
Sbjct: 90 GYIWLKVQPPILHVAARDLEAAKKLLNIA 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.378
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,941,818
Number of extensions: 894256
Number of successful extensions: 858
Number of sequences better than 10.0: 1
Number of HSP's gapped: 857
Number of HSP's successfully gapped: 29
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)