RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17456
         (203 letters)



>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 211

 Score =  140 bits (353), Expect = 2e-42
 Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 55/190 (28%)

Query: 1   MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDD 60
           +  Y+    F+G  +  A+R  L  FRLPGE+Q+I+R++E F+S YCEN      Q+ D 
Sbjct: 76  LNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCEN------QDYDP 129

Query: 61  TEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTL 120
           ++I+    + I                                                 
Sbjct: 130 SKISDNAEDDI------------------------------------------------- 140

Query: 121 INVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIY 180
             V    D+ ++L+YSIIML TDLH+PQVK  M+ E Y    +G  + +D P  YL ++Y
Sbjct: 141 STVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVY 200

Query: 181 DEIADQEIKM 190
             I D+EI M
Sbjct: 201 CSIRDKEIVM 210


>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 187

 Score = 93.4 bits (232), Expect = 1e-24
 Identities = 32/68 (47%), Positives = 47/68 (69%)

Query: 125 HTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIA 184
            + DT YVL+YS+IML TDLH+P V+ KM  E+++ +NRGI++  DLPE  L  +YD I 
Sbjct: 119 QSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIR 178

Query: 185 DQEIKMKS 192
           ++  K+  
Sbjct: 179 NEPFKIPE 186



 Score = 76.4 bits (188), Expect = 3e-18
 Identities = 32/53 (60%), Positives = 39/53 (73%)

Query: 1   MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNV 53
           ++A+VD  +F   +LV ALR FL  FRLPG+AQKIDR+ME FA RYC  NP V
Sbjct: 65  LHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGV 117


>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella
           pneumophila [TaxId: 446]}
          Length = 197

 Score = 89.9 bits (223), Expect = 3e-23
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 122 NVAHTDDTAYVLAYSIIMLTTDLHSPQV--KSKMTKEQYIRLNRGISDSQDLPEAYLSKI 179
           +V    D AY+LA+  IML TDLH+P +  K+KMT +   R  RG ++  D    +L ++
Sbjct: 124 DVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEEL 183

Query: 180 YDEIADQEIKM 190
           Y EI  +  ++
Sbjct: 184 YSEIKAKPFEL 194



 Score = 76.5 bits (188), Expect = 3e-18
 Identities = 27/53 (50%), Positives = 37/53 (69%)

Query: 1   MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNV 53
           + A+  QM F G+  V  LR FL+ F+LPGEAQKIDRL++ F+  Y + NP+V
Sbjct: 73  LKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDV 125


>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 196

 Score = 27.4 bits (60), Expect = 0.91
 Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 4/97 (4%)

Query: 26  FRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTL 85
           FR     Q +  + +K+        P    Q       A +    +R        F L  
Sbjct: 46  FRRSANTQVVREVQQKY----NMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYP 101

Query: 86  ERNAYVQALARFTLLTANSPITEMKAKNIETIKTLIN 122
               ++       +      +  +  +N + ++ L  
Sbjct: 102 HVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTA 138


>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase)
          {Lactobacillus plantarum [TaxId: 1590]}
          Length = 266

 Score = 25.7 bits (56), Expect = 4.4
 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 2  YAYVDQMQFAGRD--LVSALRYFLEGFRLPGEAQKIDRLME 40
           A   Q    G+       + Y  +G+   G  +  D L++
Sbjct: 21 MARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLD 61


>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 134

 Score = 24.8 bits (54), Expect = 5.2
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 14  DLVSALRYFLEGFRLPGEAQKIDRLMEKFA 43
           + +  LR  L G  LP   + +    EK+ 
Sbjct: 82  NALDRLRRSLGGIELPDCDRPLWLESEKYI 111


>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 95

 Score = 23.6 bits (51), Expect = 8.7
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 1  MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFA 43
          +         A  DL+  +   LE + L  E  ++  L+ K A
Sbjct: 25 LNKVRSAKGLALIDLIEGIVKILEDYELQNEETRV-HLLTKLA 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 691,974
Number of extensions: 29649
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 15
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)