BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17459
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O46382|BIG1_BOVIN Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Bos
taurus GN=ARFGEF1 PE=1 SV=1
Length = 1849
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 65/88 (73%)
Query: 77 GYNYKEKPNLLAQETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFLSLQ 136
G+ K KPNLL QET SLAC LRILF+M T E +W ++Q+L+ V EAL YFL+L
Sbjct: 1710 GFKGKSKPNLLKQETSSLACGLRILFRMYTDESRASAWEEVQQRLLNVCSEALSYFLTLT 1769
Query: 137 YEMHRDAWTSLLLLILTKILKMSDDKVR 164
E HR+AWT+LLLL LTK+LK+SD++ +
Sbjct: 1770 SESHREAWTNLLLLFLTKVLKISDNRFK 1797
>sp|D4A631|BIG1_RAT Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Rattus
norvegicus GN=Arfgef1 PE=1 SV=1
Length = 1846
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 65/88 (73%)
Query: 77 GYNYKEKPNLLAQETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFLSLQ 136
G+ K KPNLL QET SLAC LRILF+M T E +W ++Q+L+ V EAL YFL+L
Sbjct: 1707 GFKGKSKPNLLKQETSSLACGLRILFRMYTDESRVSAWEEVQQRLLNVCSEALSYFLTLT 1766
Query: 137 YEMHRDAWTSLLLLILTKILKMSDDKVR 164
E HR+AWT+LLLL LTK+LK+SD++ +
Sbjct: 1767 SESHREAWTNLLLLFLTKVLKISDNRFK 1794
>sp|Q9Y6D6|BIG1_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Homo
sapiens GN=ARFGEF1 PE=1 SV=2
Length = 1849
Score = 93.6 bits (231), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 64/88 (72%)
Query: 77 GYNYKEKPNLLAQETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFLSLQ 136
G+ K KPNLL QET SLAC LRILF+M E +W ++Q+L+ V EAL YFL+L
Sbjct: 1710 GFKGKSKPNLLKQETSSLACGLRILFRMYMDESRVSAWEEVQQRLLNVCSEALSYFLTLT 1769
Query: 137 YEMHRDAWTSLLLLILTKILKMSDDKVR 164
E HR+AWT+LLLL LTK+LK+SD++ +
Sbjct: 1770 SESHREAWTNLLLLFLTKVLKISDNRFK 1797
>sp|G3X9K3|BIG1_MOUSE Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Mus
musculus GN=Arfgef1 PE=2 SV=1
Length = 1846
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 64/88 (72%)
Query: 77 GYNYKEKPNLLAQETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFLSLQ 136
G+ K KPNLL QET SLAC LRILF+M E +W ++Q+L+ V +EAL YFL+L
Sbjct: 1707 GFKGKSKPNLLKQETSSLACGLRILFRMYMDESRVSAWEEVQQRLLNVCREALSYFLTLT 1766
Query: 137 YEMHRDAWTSLLLLILTKILKMSDDKVR 164
E HR+AWT+LLLL LTK+LK+SD + +
Sbjct: 1767 SESHREAWTNLLLLFLTKVLKISDSRFK 1794
>sp|Q7TSU1|BIG2_RAT Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Rattus
norvegicus GN=Arfgef2 PE=1 SV=1
Length = 1791
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 66/88 (75%)
Query: 77 GYNYKEKPNLLAQETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFLSLQ 136
G+ K KPNLL QET SLAC LRILF+M E R SWG I+Q+L+ V EAL YF+++
Sbjct: 1649 GFKGKSKPNLLKQETSSLACCLRILFRMYVDENRRDSWGEIQQRLLTVCSEALAYFITVN 1708
Query: 137 YEMHRDAWTSLLLLILTKILKMSDDKVR 164
E HR+AWTSLLLL+LTK LK++D+K +
Sbjct: 1709 SESHREAWTSLLLLLLTKTLKINDEKFK 1736
>sp|A2A5R2|BIG2_MOUSE Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Mus
musculus GN=Arfgef2 PE=1 SV=1
Length = 1792
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 65/88 (73%)
Query: 77 GYNYKEKPNLLAQETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFLSLQ 136
G+ K KPNLL QET SLAC LRILF+M E R SW I+Q+L+ V EAL YF+++
Sbjct: 1649 GFKGKSKPNLLKQETSSLACCLRILFRMYVDENRRDSWDEIQQRLLRVCSEALAYFITVN 1708
Query: 137 YEMHRDAWTSLLLLILTKILKMSDDKVR 164
E HR+AWTSLLLL+LTK LK+SD+K +
Sbjct: 1709 SESHREAWTSLLLLLLTKTLKISDEKFK 1736
>sp|Q9Y6D5|BIG2_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo
sapiens GN=ARFGEF2 PE=1 SV=3
Length = 1785
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 65/88 (73%)
Query: 77 GYNYKEKPNLLAQETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFLSLQ 136
G+ K KPNLL QET SLAC LRILF+M E R SW I+Q+L+ V EAL YF+++
Sbjct: 1642 GFKGKSKPNLLKQETSSLACCLRILFRMYVDENRRDSWEEIQQRLLTVCSEALAYFITVN 1701
Query: 137 YEMHRDAWTSLLLLILTKILKMSDDKVR 164
E HR+AWTSLLLL+LTK LK++D+K +
Sbjct: 1702 SESHREAWTSLLLLLLTKTLKINDEKFK 1729
>sp|P40995|SCD1_SCHPO Rho guanine nucleotide exchange factor scd1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=scd1 PE=1 SV=2
Length = 872
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 51 AVTVPPVKPFLKKCIFLNQNLYFLPPGYNYKEKPNLLAQETQSLACVLRILFKMATSEQM 110
A+ + P++ K + LNQ L P GY Y+E+ Q +ACV+R+ ++ + ++
Sbjct: 352 ALLIKPIQRICKYPLLLNQLLKGTPSGYQYEEELK------QGMACVVRVANQVNETRRI 405
Query: 111 RPSWGSI---EQQLIGVNQEALQYF 132
+ +I EQ++I +LQYF
Sbjct: 406 HENRNAIIELEQRVIDWKGYSLQYF 430
>sp|P11075|SEC7_YEAST Protein transport protein SEC7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC7 PE=1 SV=2
Length = 2009
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 84 PNLLAQETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFLSLQ---YEMH 140
PNLL QET + A +L I+F++ ++ + + +LI + + ++ ++SL E
Sbjct: 1887 PNLLKQETSAAAVLLDIMFQLYLNDDEKK--ADLITRLITICIQVVEGYVSLDDRTMERS 1944
Query: 141 RDAWTSLLLLILTKILKMSDDKVR---PATHCQV 171
+AW S+++ IL + D+ R PA + V
Sbjct: 1945 INAWRSVIVEILQGYYEFDDEDFRLYCPAMYALV 1978
>sp|Q9P7V5|SEC7B_SCHPO Protein transport protein sec72 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sec72 PE=1 SV=1
Length = 1822
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 26/125 (20%)
Query: 40 FSLRFRDDKTLAVTVPPVKPFLKKCIFLNQNLYFLPPGYNYKEKPNLLAQETQSLACVLR 99
F+ +F +DK+L +T+ L G+ K+ PNLL QET S +
Sbjct: 1666 FARKFNEDKSLRITL-------------------LNVGF-MKQLPNLLRQETASALLYIT 1705
Query: 100 ILFKMATSEQ---MRPSWGSIEQQLIGVNQEALQYFLSLQYEMH---RDAWTSLLLLILT 153
+LF++ + + I + L V E L + SL E H AW ++ IL
Sbjct: 1706 LLFRLLKTRDPLGKTETDQKIHKLLFPVCAEMLDMYASLVVEKHTRNHAAWQPVIATILD 1765
Query: 154 KILKM 158
IL +
Sbjct: 1766 SILNL 1770
>sp|A9IRA0|LGT_BART1 Prolipoprotein diacylglyceryl transferase OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=lgt PE=3 SV=1
Length = 292
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 12 FDSHPGRILSRWDSVRSGNGGLSSILSSFSLRFRDDK--------TLAVTVPPVKPFLKK 63
+ SHP I++ WD S +GGL I+ + L R + +A P ++
Sbjct: 95 YFSHPSSIIAVWDGGMSFHGGLIGIIIAMILFARKNNINIRSMFDIIAAGAPIGIGIVRI 154
Query: 64 CIFLNQNLY 72
C F+NQ L+
Sbjct: 155 CNFINQELW 163
>sp|Q21TR5|RGMG_RHOFD Putative ribose/galactose/methyl galactoside import ATP-binding
protein OS=Rhodoferax ferrireducens (strain DSM 15236 /
ATCC BAA-621 / T118) GN=Rfer_3129 PE=3 SV=1
Length = 504
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 18 RILSRWDSVRSGNGGLSSILSSFSLRFRDDKTLAVTVPPVKPFLKKCIFLNQ 69
R+ S D+V++G G LS F L D +T+P +K +LK +FLNQ
Sbjct: 319 RLASPQDAVQAGIGYLSEDRKHFGLATGMDVESNITLPSLKRWLKWGLFLNQ 370
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,421,501
Number of Sequences: 539616
Number of extensions: 2958832
Number of successful extensions: 4979
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4969
Number of HSP's gapped (non-prelim): 14
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)