Query psy17459
Match_columns 208
No_of_seqs 110 out of 121
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 22:59:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 2.8E-31 6.1E-36 277.5 7.3 128 51-180 1587-1753(1780)
2 KOG0929|consensus 99.9 1.4E-22 3E-27 209.4 6.0 115 51-181 1369-1497(1514)
3 PF09888 DUF2115: Uncharacteri 52.9 26 0.00056 29.6 4.5 97 86-189 9-127 (163)
4 PF08506 Cse1: Cse1; InterPro 35.2 51 0.0011 30.9 4.0 91 89-180 48-148 (370)
5 PF13034 DUF3895: Protein of u 26.3 51 0.0011 25.4 2.0 52 124-180 4-56 (78)
6 COG4718 Phage-related protein 24.6 33 0.00072 28.0 0.7 29 32-63 38-66 (111)
7 COG4066 Uncharacterized protei 23.7 2.6E+02 0.0057 24.3 5.9 90 86-183 9-110 (165)
8 PF03669 UPF0139: Uncharacteri 23.2 84 0.0018 24.8 2.7 66 116-190 36-101 (103)
9 PRK01022 hypothetical protein; 23.1 1.7E+02 0.0038 24.9 4.8 99 85-189 11-129 (167)
10 PRK05911 RNA polymerase sigma 23.0 2.5E+02 0.0054 24.4 5.9 76 89-168 4-84 (257)
11 PF10660 MitoNEET_N: Iron-cont 22.0 30 0.00065 25.6 0.0 20 173-192 7-26 (64)
12 KOG3380|consensus 20.5 62 0.0014 27.7 1.6 51 142-195 73-124 (152)
13 PF08167 RIX1: rRNA processing 20.3 2.3E+02 0.0049 23.2 4.8 89 92-196 63-151 (165)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=99.97 E-value=2.8e-31 Score=277.47 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=117.9
Q ss_pred EEEeCCchhhhhhh--------------hccchhhccccCcccCCCC--CchhHhhhhHHHHHHHHHHHhhcCCCCCCCH
Q psy17459 51 AVTVPPVKPFLKKC--------------IFLNQNLYFLPPGYNYKEK--PNLLAQETQSLACVLRILFKMATSEQMRPSW 114 (208)
Q Consensus 51 ~~~~~p~~~~l~~c--------------~d~eLRt~LWkAGFmgkq~--PNLLKQETsSaA~~L~ILFRMY~De~r~d~~ 114 (208)
+-++|+ +-+++++ .|++||++|||+||| +++ ||||||||+|+|||++||||||+|++....|
T Consensus 1587 ~~~l~~-~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~~g~~-~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~~~~~ 1664 (1780)
T PLN03076 1587 RPRLSA-KNTLVLFDALHTVASHAHKINSDTALRSKLQELGSM-TQMQDPPLLRLENESYQICLTFLQNLILDKPPLAKE 1664 (1780)
T ss_pred HhhCCH-HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhc-ccCCCCchhhHhHHHHHHHHHHHHHHhcCCCccchH
Confidence 356777 8888776 699999999999999 775 9999999999999999999999999987799
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC--------------------cc-cc--chhhHHHHHHHHHhhcCCchhhhccccccc
Q psy17459 115 GSIEQQLIGVNQEALQYFLSLQY--------------------EM-HR--DAWTSLLLLILTKILKMSDDKVRPATHCQV 171 (208)
Q Consensus 115 ~eIe~rLiplc~diL~~Y~sLd~--------------------Es-hR--~AWtPVVveIL~g~~~L~De~F~~h~~~fY 171 (208)
++|+++|+|+|.+|+++|+++++ ++ +| +||+|||++||+|+++|||++|++|+++||
T Consensus 1665 ~~~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~~~~~~y 1744 (1780)
T PLN03076 1665 AEVESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEKNLVRFF 1744 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999999988 44 34 799999999999999999999999999999
Q ss_pred hhhhhhhhh
Q psy17459 172 DLTGGLDQV 180 (208)
Q Consensus 172 ~Lv~~LL~~ 180 (208)
|++|+|+..
T Consensus 1745 ~l~~~l~~~ 1753 (1780)
T PLN03076 1745 PLLAGLISC 1753 (1780)
T ss_pred HHHHHHHhc
Confidence 999999986
No 2
>KOG0929|consensus
Probab=99.86 E-value=1.4e-22 Score=209.39 Aligned_cols=115 Identities=32% Similarity=0.431 Sum_probs=104.8
Q ss_pred EEEeCCchhhhhhhh--------------ccchhhccccCcccCCCCCchhHhhhhHHHHHHHHHHHhhcCCCCCCCHHH
Q psy17459 51 AVTVPPVKPFLKKCI--------------FLNQNLYFLPPGYNYKEKPNLLAQETQSLACVLRILFKMATSEQMRPSWGS 116 (208)
Q Consensus 51 ~~~~~p~~~~l~~c~--------------d~eLRt~LWkAGFmgkq~PNLLKQETsSaA~~L~ILFRMY~De~r~d~~~e 116 (208)
+-++|+ +-+++||+ |++||++||+||++ +++||||||||+|++||++||||||.|+++.. ++
T Consensus 1369 ~~~l~~-~~~~~l~d~l~~s~~fa~~fN~d~~lR~~l~~~~~~-~~~pnLL~qE~~s~~~~l~~lf~~~~~~~~~~--~~ 1444 (1514)
T KOG0929|consen 1369 YTSLSA-QHLLKLLDILSESHEFAKQFNSDYELRTKLWRAGKG-SQKPNLLRQETSSLACYLDILFRLLKDDPRVS--EE 1444 (1514)
T ss_pred HhhCCH-HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccc-CCCcchhhHHHHHHHHHHHHHHHHhccCcccc--HH
Confidence 445666 88888874 89999999999966 99999999999999999999999999999876 99
Q ss_pred HHHHHHHHHHHHHHhhhccCCccccchhhHHHHHHHHHhhcCCchhhhccccccchhhhhhhhhh
Q psy17459 117 IEQQLIGVNQEALQYFLSLQYEMHRDAWTSLLLLILTKILKMSDDKVRPATHCQVDLTGGLDQVY 181 (208)
Q Consensus 117 Ie~rLiplc~diL~~Y~sLd~EshR~AWtPVVveIL~g~~~L~De~F~~h~~~fY~Lv~~LL~~y 181 (208)
|++||+++|.+|+++|.++++|+| +|| ++. ++++|++|+|.||+++|++++.-
T Consensus 1445 i~~~l~~~c~~~l~~y~~~~~~~~-~a~-------~~~----~~~~~~~~~~~~~~~l~~~~~~~ 1497 (1514)
T KOG0929|consen 1445 IESRLVTVCSEVLKGYLSLTSETH-EAW-------LTP----SDEEFSARAPLYYALLCAMCAFD 1497 (1514)
T ss_pred HHHHHHHHHHHHHHHHHhccccch-hhh-------cCC----cHHHHhccCchHHHHHHHHHHcC
Confidence 999999999999999999999999 999 333 99999999999999999998754
No 3
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=52.88 E-value=26 Score=29.56 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=53.5
Q ss_pred hhHhhhhHHHHH--HHHHHHhhcCCCC------CCCHHHHHHHHHHHHHHHHHhhhccCC----ccccchhhHHHHHHHH
Q psy17459 86 LLAQETQSLACV--LRILFKMATSEQM------RPSWGSIEQQLIGVNQEALQYFLSLQY----EMHRDAWTSLLLLILT 153 (208)
Q Consensus 86 LLKQETsSaA~~--L~ILFRMY~De~r------~d~~~eIe~rLiplc~diL~~Y~sLd~----EshR~AWtPVVveIL~ 153 (208)
.||.|.+..+.+ ..|--++-.|-.. ....+.+.+.++..-.+|...+.+-.. +-..+.|.-.+-.|-+
T Consensus 9 ~Lk~~~~~~si~DL~~i~~~l~~~~~~lp~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 88 (163)
T PF09888_consen 9 ILKEEASNYSIYDLMKIRGFLEKDIKYLPPEYREKYIESFFEYFFGTYHEIKNMYRSGSFIEDFEIDEEEFKEFLNMIED 88 (163)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCHHHHHHHHHHHHH
Confidence 466776555444 5555555555542 223334444555555555553332221 1122777777777766
Q ss_pred HhhcCCchhhhccccccchhhhhhhhhhhC----------CCCCCC
Q psy17459 154 KILKMSDDKVRPATHCQVDLTGGLDQVYLS----------GLPVPR 189 (208)
Q Consensus 154 g~~~L~De~F~~h~~~fY~Lv~~LL~~yl~----------g~~~p~ 189 (208)
++.+-+.+.= +.....|++.|+. |||||-
T Consensus 89 ~~~~~~~~~~-------~~~l~~lis~Y~~FI~~~PlHPvG~~FPG 127 (163)
T PF09888_consen 89 GCSYSDEESE-------FRKLYYLISPYLIFILKEPLHPVGMPFPG 127 (163)
T ss_pred hhccCCcchh-------HHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 6555553321 5566678888876 899884
No 4
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=35.18 E-value=51 Score=30.86 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=61.5
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhhhccCC-------cccc---chhhHHHHHHHHHhhcC
Q psy17459 89 QETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFLSLQY-------EMHR---DAWTSLLLLILTKILKM 158 (208)
Q Consensus 89 QETsSaA~~L~ILFRMY~De~r~d~~~eIe~rLiplc~diL~~Y~sLd~-------EshR---~AWtPVVveIL~g~~~L 158 (208)
.+...+...++.+.|.|++-.-.|.=+-+|+.+ .-..+++..|+..+. +.++ ...+-.++++++.|.+=
T Consensus 48 ~~l~~~~~~l~lilKiF~sL~~~DLPe~fed~l-~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~k 126 (370)
T PF08506_consen 48 ASLKVLFEMLKLILKIFYSLNCQDLPEFFEDNL-SEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEK 126 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSS--HHHHHTH-HHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcCcHHHHHHH-HHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 344456677888999999988777666666654 444556666655542 2234 55556689999999998
Q ss_pred Cchhhhccccccchhhhhhhhh
Q psy17459 159 SDDKVRPATHCQVDLTGGLDQV 180 (208)
Q Consensus 159 ~De~F~~h~~~fY~Lv~~LL~~ 180 (208)
-+|.|..+++.|-.-+.+++.-
T Consensus 127 Y~e~f~~~l~~fv~~vw~lL~~ 148 (370)
T PF08506_consen 127 YEEEFEPFLPTFVQAVWNLLTK 148 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877777644
No 5
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=26.31 E-value=51 Score=25.36 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=37.4
Q ss_pred HHHHHHHhhhccCCc-cccchhhHHHHHHHHHhhcCCchhhhccccccchhhhhhhhh
Q psy17459 124 VNQEALQYFLSLQYE-MHRDAWTSLLLLILTKILKMSDDKVRPATHCQVDLTGGLDQV 180 (208)
Q Consensus 124 lc~diL~~Y~sLd~E-shR~AWtPVVveIL~g~~~L~De~F~~h~~~fY~Lv~~LL~~ 180 (208)
+-.+++..|+.=.++ +.+ -++|-|=.=...|+++|..-.|-.|+.||..|+.
T Consensus 4 ~e~~~i~~yi~n~~~Isa~-----elcE~LI~~~~~~~~rysTgKpkiY~~Vc~yLe~ 56 (78)
T PF13034_consen 4 LEKEFINWYIQNEEEISAR-----ELCEYLIENGGSPNKRYSTGKPKIYPYVCNYLEY 56 (78)
T ss_pred HHHHHHHHHHhccccccHH-----HHHHHHHHcCCCccccccCCCceeHHHHHHHHHH
Confidence 445666666643333 222 3566666777899999999999999999988874
No 6
>COG4718 Phage-related protein [Function unknown]
Probab=24.55 E-value=33 Score=28.01 Aligned_cols=29 Identities=34% Similarity=0.693 Sum_probs=24.4
Q ss_pred cchhhcccceeeeecCceeEEEeCCchhhhhh
Q psy17459 32 GLSSILSSFSLRFRDDKTLAVTVPPVKPFLKK 63 (208)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~p~~~~l~~ 63 (208)
||...+++++++|+-++. ++.|++.||+-
T Consensus 38 GLN~~l~t~~vt~~~~~~---~~~~l~aFL~r 66 (111)
T COG4718 38 GLNNDLKTWSVTFRVTKE---EIRPLEAFLSR 66 (111)
T ss_pred ccCcccceeEEEEEeeHH---HhhhHHHHHHh
Confidence 899999999999998875 45688888874
No 7
>COG4066 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.65 E-value=2.6e+02 Score=24.30 Aligned_cols=90 Identities=9% Similarity=0.085 Sum_probs=54.2
Q ss_pred hhHhhhhHHHHHHHHHHHhhcCCCCC----CCHHHHHHHHHHHHHHHHHhhhccCCcccc-----chhhHHHHHHHHHhh
Q psy17459 86 LLAQETQSLACVLRILFKMATSEQMR----PSWGSIEQQLIGVNQEALQYFLSLQYEMHR-----DAWTSLLLLILTKIL 156 (208)
Q Consensus 86 LLKQETsSaA~~L~ILFRMY~De~r~----d~~~eIe~rLiplc~diL~~Y~sLd~EshR-----~AWtPVVveIL~g~~ 156 (208)
-||.|.++.+.|=-.+.|-|.-.+.+ .-+.++.+++.-...+-+..--..+-+.+. ..--.-...+++++-
T Consensus 9 ~Lkkea~~~~iyDiMm~rvflerdaRylppRyr~~yvea~m~al~~rindir~~~~~~~~d~eg~~E~~D~~l~~~~~~k 88 (165)
T COG4066 9 KLKKEANNFSIYDIMMIRVFLERDARYLPPRYRNHYVEAMMKALIERINDIRKKSVDEIQDEEGDEEKLDEMLNRIERFK 88 (165)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCcccCHHHHHHHHHHHHHHH
Confidence 58999999999988889988866632 256666666666555555444444311111 223333455566666
Q ss_pred cC---CchhhhccccccchhhhhhhhhhhC
Q psy17459 157 KM---SDDKVRPATHCQVDLTGGLDQVYLS 183 (208)
Q Consensus 157 ~L---~De~F~~h~~~fY~Lv~~LL~~yl~ 183 (208)
+. |++.| .....|+..|+.
T Consensus 89 ~~~~~de~~f--------~~i~~i~~~Y~t 110 (165)
T COG4066 89 KYYTPDEERF--------INISKILCPYLT 110 (165)
T ss_pred hcCCCchHHH--------HHHHHHHHHHHH
Confidence 65 45454 445567777765
No 8
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=23.22 E-value=84 Score=24.79 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccccchhhHHHHHHHHHhhcCCchhhhccccccchhhhhhhhhhhCCCCCCCC
Q psy17459 116 SIEQQLIGVNQEALQYFLSLQYEMHRDAWTSLLLLILTKILKMSDDKVRPATHCQVDLTGGLDQVYLSGLPVPRH 190 (208)
Q Consensus 116 eIe~rLiplc~diL~~Y~sLd~EshR~AWtPVVveIL~g~~~L~De~F~~h~~~fY~Lv~~LL~~yl~g~~~p~~ 190 (208)
.+..-++++|.-.+++ .--+|-.|++-+..=.+.=++++++.-.+.|.--+..++..|| |-|-|-+
T Consensus 36 ~~L~~~~~m~gl~mr~--------K~~aW~al~~s~~S~an~k~~~d~kq~~ss~m~sv~alvm~Yl-~~~~p~~ 101 (103)
T PF03669_consen 36 SFLGMIFSMAGLMMRN--------KWCAWAALFFSCQSFANMKSSNDTKQISSSFMFSVMALVMSYL-QPPSPMT 101 (103)
T ss_pred HHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHc-CCCCCCC
Confidence 3444556666666531 2289999999888766666788899888888888999999999 6554543
No 9
>PRK01022 hypothetical protein; Provisional
Probab=23.13 E-value=1.7e+02 Score=24.86 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=49.0
Q ss_pred chhHhhhhHHHHH--HHHHHHhhcCCCC--CCCHH----HHHHHHHHHHHHHHH-hhhccCC-ccccchhhHHHHHHHHH
Q psy17459 85 NLLAQETQSLACV--LRILFKMATSEQM--RPSWG----SIEQQLIGVNQEALQ-YFLSLQY-EMHRDAWTSLLLLILTK 154 (208)
Q Consensus 85 NLLKQETsSaA~~--L~ILFRMY~De~r--~d~~~----eIe~rLiplc~diL~-~Y~sLd~-EshR~AWtPVVveIL~g 154 (208)
..||-|++..+.+ ..+-.++=.|-.. .+-|+ .+.+.++..-.+|.. .+....+ +...+.|.-....|=..
T Consensus 11 ~~Lke~~~~~si~Dl~~~~~~l~~~~~~lp~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~d~~~d~e~~~~~~~~i~~~ 90 (167)
T PRK01022 11 EKLKEEALEYSIYDLMKARVFLEKDIKYLPEKYREKYIESFFEYLFGTLNEIKSGSFSEIEDPEIDEEEFKEFLARIEDQ 90 (167)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcCccCCHHHHHHHHHHHHHH
Confidence 4577777766665 4444444344331 12233 333334444444443 2222111 12346677766655554
Q ss_pred hhcCCchhhhccccccchhhhhhhhhhhC----------CCCCCC
Q psy17459 155 ILKMSDDKVRPATHCQVDLTGGLDQVYLS----------GLPVPR 189 (208)
Q Consensus 155 ~~~L~De~F~~h~~~fY~Lv~~LL~~yl~----------g~~~p~ 189 (208)
+-+=+ --..-+.+...|+..|+. |||||-
T Consensus 91 ~~~~~------~~~~~~~~~~~lv~~Y~~FI~~~PlHPvG~~FPG 129 (167)
T PRK01022 91 CENPD------PGEPRFRLLYKLVSPYLIFILKEPLHPVGTPFPG 129 (167)
T ss_pred HhccC------CCchHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 41111 113344666778888876 999985
No 10
>PRK05911 RNA polymerase sigma factor sigma-28; Reviewed
Probab=22.97 E-value=2.5e+02 Score=24.40 Aligned_cols=76 Identities=11% Similarity=0.122 Sum_probs=50.5
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhhh-ccCCcccc-chhhHHHHHHHHHhhcCCch---hh
Q psy17459 89 QETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFL-SLQYEMHR-DAWTSLLLLILTKILKMSDD---KV 163 (208)
Q Consensus 89 QETsSaA~~L~ILFRMY~De~r~d~~~eIe~rLiplc~diL~~Y~-sLd~EshR-~AWtPVVveIL~g~~~L~De---~F 163 (208)
|.|+.+.- ++..|.+....+.++++.++-.|++.-+...|. .+..+-.. +-.+-.++-++..+-+||.+ .|
T Consensus 4 ~~~~~~~~----~~~~~~~~~~~~ar~~Li~~~~~lV~~ia~~~~~~~~~~~~~eDL~QeG~igL~~ai~~fd~~~g~~F 79 (257)
T PRK05911 4 QKTQNIAE----TWQLYWSTQEIEYRDVLIEFYLPLVKNVAHRLISGMPSHVKTEDLYASGVEGLVRAVERFDPEKSRRF 79 (257)
T ss_pred hhhhhHHH----HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCCCH
Confidence 44544442 556776666566888999999999999998875 33333234 45566667788888888864 46
Q ss_pred hcccc
Q psy17459 164 RPATH 168 (208)
Q Consensus 164 ~~h~~ 168 (208)
..++.
T Consensus 80 ~tya~ 84 (257)
T PRK05911 80 EGYAL 84 (257)
T ss_pred HHHHH
Confidence 55543
No 11
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=21.96 E-value=30 Score=25.55 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=0.0
Q ss_pred hhhhhhhhhhCCCCCCCCCC
Q psy17459 173 LTGGLDQVYLSGLPVPRHGQ 192 (208)
Q Consensus 173 Lv~~LL~~yl~g~~~p~~~~ 192 (208)
++.+-+-.||.++|+|.+=+
T Consensus 7 ~vk~~lP~YL~~lPiP~s~g 26 (64)
T PF10660_consen 7 LVKVSLPNYLKSLPIPDSFG 26 (64)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 45566778999999999854
No 12
>KOG3380|consensus
Probab=20.51 E-value=62 Score=27.72 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=36.7
Q ss_pred chhhHHHHHHHHHhhcCCchhhhccccccchhhhhhhhhhhC-CCCCCCCCCccc
Q psy17459 142 DAWTSLLLLILTKILKMSDDKVRPATHCQVDLTGGLDQVYLS-GLPVPRHGQTCG 195 (208)
Q Consensus 142 ~AWtPVVveIL~g~~~L~De~F~~h~~~fY~Lv~~LL~~yl~-g~~~p~~~~~~~ 195 (208)
+....+++.+|+.+-.-|=+.+.+-++.= -.|+|.-|++ ||-.|-...+|+
T Consensus 73 ~~a~~~v~~vL~~ik~adI~~~v~~Ls~e---~~DiLmKYiYkGm~~p~d~~s~~ 124 (152)
T KOG3380|consen 73 DRALNVVLKVLTSIKQADIEAAVKKLSTE---EIDILMKYIYKGMEIPSDNSSCV 124 (152)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhHH---HHHHHHHHHHHHhcCccccchHH
Confidence 55556677777777766655554444433 3688899999 999999999997
No 13
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=20.33 E-value=2.3e+02 Score=23.18 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCccccchhhHHHHHHHHHhhcCCchhhhccccccc
Q psy17459 92 QSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEALQYFLSLQYEMHRDAWTSLLLLILTKILKMSDDKVRPATHCQV 171 (208)
Q Consensus 92 sSaA~~L~ILFRMY~De~r~d~~~eIe~rLiplc~diL~~Y~sLd~EshR~AWtPVVveIL~g~~~L~De~F~~h~~~fY 171 (208)
+....+++.+..+....+. ..+.+..+.....++. |..=.+|-.|+.=+|-+--+++-++++.++ +..-
T Consensus 63 ~~~~~W~~~Ll~~L~~~~~----~~~~~~ai~~L~~l~~-~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~------~~~~ 131 (165)
T PF08167_consen 63 SHGSQWLRALLSILEKPDP----PSVLEAAIITLTRLFD-LIRGKPTLTREIATPNLPKFIQSLLQLLQD------SSCP 131 (165)
T ss_pred HHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHH-HhcCCCchHHHHhhccHHHHHHHHHHHHhc------cccH
Confidence 3455667777776655332 2233333333333332 221122226655577777777777777765 4555
Q ss_pred hhhhhhhhhhhCCCCCCCCCCcccC
Q psy17459 172 DLTGGLDQVYLSGLPVPRHGQTCGK 196 (208)
Q Consensus 172 ~Lv~~LL~~yl~g~~~p~~~~~~~~ 196 (208)
..+++.+.--+ |+||.||+.
T Consensus 132 ~~~l~~L~~ll-----~~~ptt~rp 151 (165)
T PF08167_consen 132 ETALDALATLL-----PHHPTTFRP 151 (165)
T ss_pred HHHHHHHHHHH-----HHCCccccc
Confidence 56666666666 677777753
Done!