Query psy17459
Match_columns 208
No_of_seqs 110 out of 121
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 22:59:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4axg_C Protein CUP; 4E-BP, mRN 56.5 2.9 0.0001 33.4 0.6 33 60-92 60-125 (130)
2 3bd1_A CRO protein; transcript 27.6 24 0.0008 23.4 1.3 39 57-96 39-79 (79)
3 2k1a_A Integrin alpha-IIB; sin 19.5 30 0.001 22.6 0.6 14 71-84 29-42 (42)
4 2jnu_A RGS14, regulator of G-p 14.6 2E+02 0.0067 21.6 4.2 113 68-195 5-148 (154)
5 1qmo_A Mannose binding lectin, 12.9 45 0.0015 25.1 0.1 47 6-59 45-97 (113)
6 1r3s_A URO-D, uroporphyrinogen 12.1 1.6E+02 0.0053 25.4 3.3 72 113-196 187-265 (367)
7 1aep_A Apolipophorin III; lipo 11.2 3.1E+02 0.01 22.1 4.5 66 86-151 58-134 (161)
8 3bqo_B TERF1-interacting nucle 11.1 65 0.0022 19.4 0.4 19 5-29 5-23 (26)
9 2pft_A Exocytosis protein; hel 10.6 77 0.0026 29.4 0.9 52 110-172 517-568 (571)
10 1vq8_X 50S ribosomal protein L 9.9 79 0.0027 23.7 0.6 23 62-86 48-70 (92)
No 1
>4axg_C Protein CUP; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=56.49 E-value=2.9 Score=33.43 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=8.0
Q ss_pred hhhhhhccch-----hhccccCc----------------------------ccCCCCCchhHhhhh
Q psy17459 60 FLKKCIFLNQ-----NLYFLPPG----------------------------YNYKEKPNLLAQETQ 92 (208)
Q Consensus 60 ~l~~c~d~eL-----Rt~LWkAG----------------------------Fmgkq~PNLLKQETs 92 (208)
=..-|+|-|| ||-||+.- |++|.||+|+..||.
T Consensus 60 RIATCDDIELE~RLRRMNlWR~sDg~~fr~r~~~~~~n~~~~nnNECMPAFyKNknK~qlIsDESI 125 (130)
T 4axg_C 60 RIATCDDIELEGRLRRMNIWRTSDGTRFRTRSTTANLNMNNNNNNECMPAFFKNKNKPNLISDESI 125 (130)
T ss_dssp -------CTHHHHHHHTTCBCC--------------------------------------------
T ss_pred ccccccchhHHHHHHhhhheeccCCceecccccccCcccccchhhhhhHHHHhCCCCccccchhhh
Confidence 3667999997 77889743 677788888888863
No 2
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=27.55 E-value=24 Score=23.40 Aligned_cols=39 Identities=15% Similarity=-0.003 Sum_probs=14.0
Q ss_pred chhhhhhhhccc--hhhccccCcccCCCCCchhHhhhhHHHH
Q psy17459 57 VKPFLKKCIFLN--QNLYFLPPGYNYKEKPNLLAQETQSLAC 96 (208)
Q Consensus 57 ~~~~l~~c~d~e--LRt~LWkAGFmgkq~PNLLKQETsSaA~ 96 (208)
.+-+.+||.-.+ ....-....+- ...|.+.+||++.+|+
T Consensus 39 ~~~l~~ia~~l~~~v~~~~l~p~~~-g~~~~~~~~~~s~~a~ 79 (79)
T 3bd1_A 39 AERCIDIERVTNGAVICRELRPDVF-GASPAGHRPEASNAAA 79 (79)
T ss_dssp GGGHHHHHHHTTTSSCHHHHCTTTS-CC--------------
T ss_pred HHHHHHHHHHHCCCCcHHHhCcccc-cccchhhhcccccccC
Confidence 688889998777 32221223344 3459999999998874
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=19.54 E-value=30 Score=22.59 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=9.5
Q ss_pred hccccCcccCCCCC
Q psy17459 71 LYFLPPGYNYKEKP 84 (208)
Q Consensus 71 t~LWkAGFmgkq~P 84 (208)
..|||.||--++.|
T Consensus 29 ~~LwK~GFFkR~~~ 42 (42)
T 2k1a_A 29 LAMWKVGFFKRNRP 42 (42)
T ss_dssp HHHHHTTTTCCCCC
T ss_pred HHHHHcCcccCCCC
Confidence 46999999734443
No 4
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=14.60 E-value=2e+02 Score=21.61 Aligned_cols=113 Identities=19% Similarity=0.108 Sum_probs=48.6
Q ss_pred chhhccccCcccCCCCCchhHhhhhHHHHHHHHHHHhhcCCCCC----CCHHHHH----------HHHHHHHHHHHHhhh
Q psy17459 68 NQNLYFLPPGYNYKEKPNLLAQETQSLACVLRILFKMATSEQMR----PSWGSIE----------QQLIGVNQEALQYFL 133 (208)
Q Consensus 68 eLRt~LWkAGFmgkq~PNLLKQETsSaA~~L~ILFRMY~De~r~----d~~~eIe----------~rLiplc~diL~~Y~ 133 (208)
+.|+.-|...|- .+|++..+ +-+|+-|+..... .-|.+|+ +.+...+..|.+.|.
T Consensus 5 ~~~~~~w~~sl~-----~iL~dp~g------~~~F~~FL~~e~~~Enl~Fw~~ve~~k~~~~~~~~~~~~~a~~Iy~~yi 73 (154)
T 2jnu_A 5 EQPVASWALSFE-----RLLQDPLG------LAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQEFL 73 (154)
T ss_dssp CCSGGGGGTCHH-----HHHHSHHH------HHHHHHHTTTSSCTHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHHhHH-----HHHCChHH------HHHHHHHHHHhcCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHc
Confidence 345666766665 56666544 4467767665531 1333333 346677889999998
Q ss_pred ccCCcccc---chhhHHHHHHHHHhhcCCchhhhccccccchhh--------------hhhhhhhhCCCCCCCCCCccc
Q psy17459 134 SLQYEMHR---DAWTSLLLLILTKILKMSDDKVRPATHCQVDLT--------------GGLDQVYLSGLPVPRHGQTCG 195 (208)
Q Consensus 134 sLd~EshR---~AWtPVVveIL~g~~~L~De~F~~h~~~fY~Lv--------------~~LL~~yl~g~~~p~~~~~~~ 195 (208)
+-.+..+- ..=+ +.... .-..+.+-|...-...|.+. .++++--+.|-|.|+.+-.|+
T Consensus 74 ~~~s~~evni~~~~r-~~~~~---~~~p~~~~Fd~aq~~V~~lm~~d~~~rFl~S~~y~~~l~~~~e~~p~~~~~~~~~ 148 (154)
T 2jnu_A 74 SSQALSPVNIDRQAW-LGEEV---LAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAEAEGRPLREPGSSRL 148 (154)
T ss_dssp STTCSSCCCSCCTTC-CCHHH---HHSCCTTTTHHHHHHHHHHHHTTHHHHHTTSTTHHHHHCSSCC------------
T ss_pred CCCCCcccCCcHHHH-HHHHH---hcCCCHHHHHHHHHHHHHHHHhChhHhhccCHHHHHHHHHHhcCCCCCCCccccC
Confidence 76543211 0001 11111 12333444444333333322 133444555999888877775
No 5
>1qmo_A Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1
Probab=12.90 E-value=45 Score=25.14 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCcccccccccccCCCcchhhcccceeeeec------CceeEEEeCCchh
Q psy17459 6 PSLGRGFDSHPGRILSRWDSVRSGNGGLSSILSSFSLRFRD------DKTLAVTVPPVKP 59 (208)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~p~~~ 59 (208)
-+.||.|-++|=++ ||+ +|-+.|.-.+|+..... ..-|+--++|...
T Consensus 45 ~s~Gra~Y~~Pv~l---~d~----tg~vaSFsT~F~F~I~~~~~~~~gdGlAF~lap~~~ 97 (113)
T 1qmo_A 45 SSAGRVLYSAPLRL---WED----SAVLTSFDTIINFEISTPYTSRIADGLAFFIAPPDS 97 (113)
T ss_dssp SCEEEEEESSCEEC---CCT----TEEEEEEEEEEEEEEECSSSSCCCCEEEEEEECTTC
T ss_pred CcEEEEEeCCCEEe---eCC----CCCEEeeEEEEEEEEecCCCCCCCCeEEEEecCCCC
Confidence 36788888888776 887 44566666666665432 3356777777544
No 6
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=12.07 E-value=1.6e+02 Score=25.35 Aligned_cols=72 Identities=4% Similarity=-0.115 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhhccCCcc-cc-chhhHHHHHHHHHhhcCCchhhhccccccchhhhhhhh-hhhC----CC
Q psy17459 113 SWGSIEQQLIGVNQEALQYFLSLQYEM-HR-DAWTSLLLLILTKILKMSDDKVRPATHCQVDLTGGLDQ-VYLS----GL 185 (208)
Q Consensus 113 ~~~eIe~rLiplc~diL~~Y~sLd~Es-hR-~AWtPVVveIL~g~~~L~De~F~~h~~~fY~Lv~~LL~-~yl~----g~ 185 (208)
...++.+++...+.+.++.+.+.--+. +- +.|.. -++.++|.+++--++.-+++-+. -+-- |.
T Consensus 187 ~~~~ll~~l~~~~~~~~~~~i~aGad~i~i~D~~~~----------~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~ 256 (367)
T 1r3s_A 187 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAG----------HLGPQLFNKFALPYIRDVAKQVKARLREAGLAPV 256 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGG----------GSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCccc----------cCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCC
Confidence 444555555555555555555433222 22 66873 57999999999999888887765 3311 34
Q ss_pred CCCCCCCcccC
Q psy17459 186 PVPRHGQTCGK 196 (208)
Q Consensus 186 ~~p~~~~~~~~ 196 (208)
|+=+| .||.
T Consensus 257 p~i~~--~~G~ 265 (367)
T 1r3s_A 257 PMIIF--AKDG 265 (367)
T ss_dssp CEEEE--ETTC
T ss_pred CeEEE--cCCc
Confidence 44444 5665
No 7
>1aep_A Apolipophorin III; lipoprotein; 2.70A {Locusta migratoria} SCOP: a.63.1.1
Probab=11.16 E-value=3.1e+02 Score=22.07 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=36.2
Q ss_pred hhHhhh----hHHHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHHHHHHhhhccCCccc---cchhhHHHHHH
Q psy17459 86 LLAQET----QSLACVLRILFKMATSEQMRP----SWGSIEQQLIGVNQEALQYFLSLQYEMH---RDAWTSLLLLI 151 (208)
Q Consensus 86 LLKQET----sSaA~~L~ILFRMY~De~r~d----~~~eIe~rLiplc~diL~~Y~sLd~Esh---R~AWtPVVveI 151 (208)
-||||. +|.|--++-.-|-..+.-++. .-.+-...|-.....+=+.+......++ .+||.||--.+
T Consensus 58 slkqeaekhqgsvaeqlnafarnlnnsihdaatslnlqdqlnslqsaltnvghqwqdiatktqasaqeawapvqsal 134 (161)
T 1aep_A 58 SLKQEAEKHQGSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQSALTNVGHQWQDIATKTQASAQEAWAPVQSAL 134 (161)
T ss_dssp HHHHHHTTCCTHHHHHHHHHHHHHHHTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTGGGHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhhhHHHHHhcccHHHHHHHHHHHHHhhhhHHHHHHHHhHhhHHHHHhhHHHHH
Confidence 368886 678877777777665444321 1222222333333344444555544443 39999986544
No 8
>3bqo_B TERF1-interacting nuclear factor 2; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens}
Probab=11.06 E-value=65 Score=19.42 Aligned_cols=19 Identities=47% Similarity=0.868 Sum_probs=13.9
Q ss_pred cCCCCCCCCCCCCcccccccccccC
Q psy17459 5 LPSLGRGFDSHPGRILSRWDSVRSG 29 (208)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (208)
|-.||| -||.|.|.|.+.|
T Consensus 5 LAPLGr------R~i~s~wasa~~g 23 (26)
T 3bqo_B 5 LAPLGR------RRVQSQWASTRXX 23 (26)
T ss_pred cccccc------ccccccccccccc
Confidence 445665 4899999998655
No 9
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=10.55 E-value=77 Score=29.41 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhccCCccccchhhHHHHHHHHHhhcCCchhhhccccccch
Q psy17459 110 MRPSWGSIEQQLIGVNQEALQYFLSLQYEMHRDAWTSLLLLILTKILKMSDDKVRPATHCQVD 172 (208)
Q Consensus 110 r~d~~~eIe~rLiplc~diL~~Y~sLd~EshR~AWtPVVveIL~g~~~L~De~F~~h~~~fY~ 172 (208)
|.+.+.+|.+.++|.=..-++.|...+...+. ++|.+.+.|++......+|.
T Consensus 517 R~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~-----------~KyiKytpe~le~~L~~LFe 568 (571)
T 2pft_A 517 RDKIRQAQKDIVKETYGAFLHRYGSVPFTKNP-----------EKYIKYRVEQVGDMIDRLFD 568 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCH-----------HHHCCCCHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCcccCCC-----------CCccccCHHHHHHHHHHHhC
Confidence 44577899999999999999999986544444 47777777877777766654
No 10
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=9.93 E-value=79 Score=23.65 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=19.8
Q ss_pred hhhhccchhhccccCcccCCCCCch
Q psy17459 62 KKCIFLNQNLYFLPPGYNYKEKPNL 86 (208)
Q Consensus 62 ~~c~d~eLRt~LWkAGFmgkq~PNL 86 (208)
..|+|..+...+|.-|.. ..|.-
T Consensus 48 dVriD~~LNk~iW~rGir--~vP~r 70 (92)
T 1vq8_X 48 AVRLDPSINEAAWARGRA--NTPSK 70 (92)
T ss_dssp GEEECHHHHHHHTTTCSS--CCCSE
T ss_pred cEEECcHHHHHHHhcccC--CCCce
Confidence 579999999999999998 57763
Done!