Query psy17459
Match_columns 208
No_of_seqs 110 out of 121
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 22:59:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17459.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17459hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m8za_ a.118.1.8 (A:) Pumilio 23.4 3.1 0.00023 32.8 -2.5 58 70-128 2-69 (339)
2 d1krha3 d.15.4.2 (A:2-105) Ben 15.9 41 0.003 22.8 2.5 30 40-69 5-34 (104)
3 d1auga_ c.56.4.1 (A:) Pyrrolid 14.5 31 0.0023 26.2 1.6 14 44-57 159-172 (210)
4 d1iu8a_ c.56.4.1 (A:) Pyrrolid 13.9 1.2E+02 0.0085 22.7 4.9 49 45-109 155-204 (206)
5 d2qtva1 a.71.2.1 (A:524-626) S 13.3 62 0.0045 23.0 2.9 38 89-127 2-39 (103)
6 d1aepa_ a.63.1.1 (A:) Apolipop 12.7 1.2E+02 0.0089 22.2 4.5 66 86-151 53-129 (153)
7 d1vqox1 d.29.1.1 (X:7-88) Ribo 11.1 31 0.0023 23.6 0.6 22 62-85 41-62 (82)
8 d2ivxa2 a.74.1.1 (A:150-262) C 10.6 1.9E+02 0.014 19.8 4.9 57 78-134 27-97 (113)
9 d2cmyb1 g.2.4.1 (B:7-29) Tryps 10.3 40 0.0029 18.6 0.7 13 53-67 10-22 (26)
10 d1x9fc_ a.1.1.2 (C:) Extracell 9.7 2.1E+02 0.015 19.4 4.8 56 94-156 89-146 (149)
No 1
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.39 E-value=3.1 Score=32.76 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=29.2
Q ss_pred hhccccCcccCCCCCch-hHhhh---------hHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q psy17459 70 NLYFLPPGYNYKEKPNL-LAQET---------QSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEA 128 (208)
Q Consensus 70 Rt~LWkAGFmgkq~PNL-LKQET---------sSaA~~L~ILFRMY~De~r~d~~~eIe~rLiplc~di 128 (208)
|-+||+. |.+++.||+ |+|-. +..+=++--+++.-.++.++...+++...+.++|.+-
T Consensus 2 ~~~~~~~-~~~~~~~~~~l~~~~g~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~ 69 (339)
T d1m8za_ 2 RSRLLED-FRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDV 69 (339)
T ss_dssp CCHHHHH-HHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTST
T ss_pred CchHhHH-hhcCCCCCCcHHHHHhHHHHHhcCchhhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhCc
Confidence 4567776 655777777 44432 2223334444443333334445555555555555443
No 2
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Probab=15.90 E-value=41 Score=22.80 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=24.9
Q ss_pred ceeeeecCceeEEEeCCchhhhhhhhccch
Q psy17459 40 FSLRFRDDKTLAVTVPPVKPFLKKCIFLNQ 69 (208)
Q Consensus 40 ~~~~~~~~~~l~~~~~p~~~~l~~c~d~eL 69 (208)
..++|.|+++..+.+++=+++|........
T Consensus 5 Vt~~f~dg~~~~~~~~~getlL~aa~~~gi 34 (104)
T d1krha3 5 VALQFEDGVTRFICIAQGETLSDAAYRQQI 34 (104)
T ss_dssp EEEECTTSCEEEEEECTTCCHHHHHHHTTC
T ss_pred EEEEeCCCCEEEEEeCCCCcHHHHHHHcCC
Confidence 467899999999999998999987765543
No 3
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=14.49 E-value=31 Score=26.23 Aligned_cols=14 Identities=7% Similarity=0.097 Sum_probs=11.2
Q ss_pred eecCceeEEEeCCc
Q psy17459 44 FRDDKTLAVTVPPV 57 (208)
Q Consensus 44 ~~~~~~l~~~~~p~ 57 (208)
..+.+++||||||+
T Consensus 159 ~~~~~~~FvHvP~~ 172 (210)
T d1auga_ 159 HPHIRGGFIHIPYI 172 (210)
T ss_dssp CTTCEEEEEEECCC
T ss_pred CCCCeEEEEECCCc
Confidence 34668999999983
No 4
>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.91 E-value=1.2e+02 Score=22.74 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=28.8
Q ss_pred ecCceeEEEeCCchhhhhhhhccchhhccccCcccCCCCCch-hHhhhhHHHHHHHHHHHhhcCCC
Q psy17459 45 RDDKTLAVTVPPVKPFLKKCIFLNQNLYFLPPGYNYKEKPNL-LAQETQSLACVLRILFKMATSEQ 109 (208)
Q Consensus 45 ~~~~~l~~~~~p~~~~l~~c~d~eLRt~LWkAGFmgkq~PNL-LKQETsSaA~~L~ILFRMY~De~ 109 (208)
.+..++||||||+. || ..++.|. |-+ |..-+.++.+.++.+..+..|.+
T Consensus 155 ~~~~~~FIHvP~~~---------eq--~~~~~~~-----~~~~l~~~~~a~~~~i~~~~~~~~~~~ 204 (206)
T d1iu8a_ 155 YPKIAGFIHVPYTP---------DQ--VLEKKNT-----PSMSLDLEIKGVEIAIRVAQSALHSSQ 204 (206)
T ss_dssp CSSEEEEEEECBCG---------GG--CTTCTTC-----CBCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCh---------Hh--ccCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35579999999843 33 2233333 222 34455666677777777766544
No 5
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.30 E-value=62 Score=23.01 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q psy17459 89 QETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQE 127 (208)
Q Consensus 89 QETsSaA~~L~ILFRMY~De~r~d~~~eIe~rLiplc~d 127 (208)
||+++....=-.++|+=.++. .|....+.+.||.+|+-
T Consensus 2 QEaAaVl~AR~a~~k~~~e~~-~Dv~rwlDr~lIrl~~k 39 (103)
T d2qtva1 2 QEAAAVLMARIAVHKAETDDG-ADVIRWLDRTLIKLCQK 39 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcccch-HHHHHHHHHHHHHHHHH
Confidence 888777666667788765543 35566777888888863
No 6
>d1aepa_ a.63.1.1 (A:) Apolipophorin-III {African locust (Locusta migratoria) [TaxId: 7004]}
Probab=12.66 E-value=1.2e+02 Score=22.24 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=36.3
Q ss_pred hhHhhh----hHHHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHHHHHHhhhccCCccc---cchhhHHHHHH
Q psy17459 86 LLAQET----QSLACVLRILFKMATSEQMRP----SWGSIEQQLIGVNQEALQYFLSLQYEMH---RDAWTSLLLLI 151 (208)
Q Consensus 86 LLKQET----sSaA~~L~ILFRMY~De~r~d----~~~eIe~rLiplc~diL~~Y~sLd~Esh---R~AWtPVVveI 151 (208)
-||||. +|.|--++-.-|-..+.-++. .-.+-...|-.....+=+.+......++ .+||.||--.+
T Consensus 53 slkqeaekhqgsvaeqlnafarnlnnsihdaatslnlqdqlnslqsaltnvghqwqdiatktqasaqeawapvqsal 129 (153)
T d1aepa_ 53 SLKQEAEKHQGSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQSALTNVGHQWQDIATKTQASAQEAWAPVQSAL 129 (153)
T ss_dssp HHHHHHTTCCTHHHHHHHHHHHHHHHTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTGGGHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhhhHHHHHhcccHHHHHHHHHHHHHhhhhHHHHHHHHhHhhHHHHHhhHHHHH
Confidence 368886 688887877777665444321 1222222333333344444555544443 39999986544
No 7
>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=11.13 E-value=31 Score=23.63 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=18.8
Q ss_pred hhhhccchhhccccCcccCCCCCc
Q psy17459 62 KKCIFLNQNLYFLPPGYNYKEKPN 85 (208)
Q Consensus 62 ~~c~d~eLRt~LWkAGFmgkq~PN 85 (208)
++.+|.++...+|.-|.. ++|+
T Consensus 41 ~V~ID~~lN~~IWsrGi~--~pP~ 62 (82)
T d1vqox1 41 AVRLDPSINEAAWARGRA--NTPS 62 (82)
T ss_dssp GEEECHHHHHHHTTTCTT--CCCS
T ss_pred eEEECcHHHHHHHhccCc--CCCC
Confidence 468899999999999987 6775
No 8
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=1.9e+02 Score=19.76 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=36.1
Q ss_pred ccCCC--CCch-hHhhhhHHHHH-HHHHHHhhcCCCC----CCCH-HHH-----HHHHHHHHHHHHHhhhc
Q psy17459 78 YNYKE--KPNL-LAQETQSLACV-LRILFKMATSEQM----RPSW-GSI-----EQQLIGVNQEALQYFLS 134 (208)
Q Consensus 78 Fmgkq--~PNL-LKQETsSaA~~-L~ILFRMY~De~r----~d~~-~eI-----e~rLiplc~diL~~Y~s 134 (208)
|+++. .++| |..+....|+. |.+.+|++.-+-. ...| +.+ .+.+..+|.++++-|-.
T Consensus 27 ~lnDs~r~T~lcL~~~P~~IA~a~I~LA~~~~~~~~p~~~~~~~Ww~~fd~~vt~e~i~~i~~~il~lYe~ 97 (113)
T d2ivxa2 27 MATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEK 97 (113)
T ss_dssp HHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCeeeecCcHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 44443 2666 66666666554 8889998863331 1123 222 46788899999999964
No 9
>d2cmyb1 g.2.4.1 (B:7-29) Trypsin inhibitor VhTI {Veronica hederifolia [TaxId: 202477]}
Probab=10.27 E-value=40 Score=18.65 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=8.8
Q ss_pred EeCCchhhhhhhhcc
Q psy17459 53 TVPPVKPFLKKCIFL 67 (208)
Q Consensus 53 ~~~p~~~~l~~c~d~ 67 (208)
|-|| .||+-|.|+
T Consensus 10 hssp--ellrrcldn 22 (26)
T d2cmyb1 10 HSSP--ELLRRCLDN 22 (26)
T ss_dssp --CC--HHHHHHHHH
T ss_pred cCCH--HHHHHHHHc
Confidence 4567 688999885
No 10
>d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=9.65 E-value=2.1e+02 Score=19.40 Aligned_cols=56 Identities=25% Similarity=0.208 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCC-C-CCCCHHHHHHHHHHHHHHHHHhhhccCCccccchhhHHHHHHHHHhh
Q psy17459 94 LACVLRILFKMATSE-Q-MRPSWGSIEQQLIGVNQEALQYFLSLQYEMHRDAWTSLLLLILTKIL 156 (208)
Q Consensus 94 aA~~L~ILFRMY~De-~-r~d~~~eIe~rLiplc~diL~~Y~sLd~EshR~AWtPVVveIL~g~~ 156 (208)
+..+++-|=+..... . ..+.++.+.+.|+.+..+.+. + ...+||+.++-.|.+++.
T Consensus 89 l~~~L~~lg~~H~~r~gv~~~~f~~~~~~l~~~l~~~l~------~-~~~~AW~~~~~~i~~~i~ 146 (149)
T d1x9fc_ 89 LDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLD------D-YDALAWKSCLKGILTKIS 146 (149)
T ss_dssp HHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHCS------C-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhcCCCHHHHHHHHHHHHHHHHHHcC------h-hhHHHHHHHHHHHHHHHH
Confidence 444555555554322 1 234666777777777666543 2 234799999998888764
Done!