RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17459
(208 letters)
>gnl|CDD|143566 cd07457, CRD_FZ9_like, Cysteine-rich Wnt-binding domain (CRD) of
receptors similar to frizzled 9. The cysteine-rich
domain (CRD) is an essential extracellular portion of
the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors,
and similar proteins. This domain is required for
binding Wnt proteins, which play fundamental roles in
many aspects of early development, such as cell and
tissue polarity, neural synapse formation, and the
regulation of proliferation. Fz proteins serve as Wnt
receptors for multiple signal transduction pathways,
including both beta-catenin dependent and -independent
cellular signaling, as well as the planar cell polarity
pathway and Ca(2+) modulating signaling pathway. The
CRD domain is well conserved in metazoans - 10 frizzled
proteins have been identified in mammals, 4 in
Drosophila and 3 in Caenorhabditis elegans. Very little
is known about the mechanism by which CRD domains
interact with their ligands. The domain contains 10
conserved cysteines.
Length = 121
Score = 27.5 bits (61), Expect = 2.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 77 GYNYKEKPNLLAQETQSLA 95
GYN PNLL E+QS A
Sbjct: 15 GYNMTRMPNLLGHESQSEA 33
>gnl|CDD|147861 pfam05939, Phage_min_tail, Phage minor tail protein. This family
consists of a series of phage minor tail proteins and
related sequences from several bacterial species.
Length = 109
Score = 27.2 bits (61), Expect = 3.3
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Query: 25 SVRSGNG-------GLSSILSSFSLRFRDDKTLAVTVPPVKPFLK 62
V+ G+G GL++ L ++SL F K + ++ FL
Sbjct: 22 KVQFGDGYEQRSGDGLNNRLQTWSLTFTGTKD---EIRAIEAFLD 63
>gnl|CDD|234417 TIGR03958, monoFe_hyd_HmdC, 5,10-methenyltetrahydromethanopterin
hydrogenase cofactor biosynthesis protein HmdC. Members
of this protein family are HmdC, whose gene regularly
occurs in the context of genes for HmdA
(5,10-methenyltetrahydromethanopterin hydrogenase) and
the radical SAM protein HmdB involved in biosynthesis of
the HmdA cofactor. Bioinformatics suggests this protein,
a homolog of eukaryotic fibrillarin, may be involved in
biosynthesis of the guanylyl pyridinol cofactor in HmdA
[Protein fate, Protein modification and repair, Energy
metabolism, Methanogenesis].
Length = 505
Score = 27.8 bits (62), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 169 CQVDLTGGLDQVYLSGLPVPRHGQTCG 195
C+V L GL+ + LSG P HG CG
Sbjct: 293 CRVGLRSGLNAI-LSGFPKNHHGYMCG 318
>gnl|CDD|222727 pfam14388, DUF4419, Domain of unknown function (DUF4419). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
348 and 454 amino acids in length.
Length = 297
Score = 27.6 bits (62), Expect = 5.2
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 132 FLSLQYEMHRDAWTSLLLLILTKILKMSDDKV 163
EM + W SLLL IL K + D
Sbjct: 153 LKEFGLEM--EWWASLLLPILDKFIASFDGPP 182
>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein
(TBPIP). This family consists of several eukaryotic
TBP-1 interacting protein (TBPIP) sequences. TBP-1 has
been demonstrated to interact with the human
immunodeficiency virus type 1 (HIV-1) viral protein Tat,
then modulate the essential replication process of HIV.
In addition, TBP-1 has been shown to be a component of
the 26S proteasome, a basic multiprotein complex that
degrades ubiquitinated proteins in an ATP-dependent
fashion. Human TBPIP interacts with human TBP-1 then
modulates the inhibitory action of human TBP-1 on
HIV-Tat-mediated transactivation.
Length = 169
Score = 26.9 bits (60), Expect = 5.4
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 58 KPFLKKCIFL-NQNLYFLPPGYN----------YKEKPNLLAQETQSLACVLRILFKMAT 106
K + K+ I+L NQ+ + LP +E+ LL Q+ +L L+ L T
Sbjct: 51 KEYGKQKIYLCNQDQFELPSDEELNKLDMEIEELREEVQLLKQDCSTLEIELKSLTSDLT 110
Query: 107 SEQMRPSWGSIEQQL 121
+E+++ +++++
Sbjct: 111 TEELQEEIQELKKEV 125
>gnl|CDD|226505 COG4018, COG4018, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 505
Score = 27.5 bits (61), Expect = 6.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 169 CQVDLTGGLDQVYLSGLPVPRHGQTCG 195
C+V L GL+ + L+G P HG CG
Sbjct: 293 CRVGLRAGLNGI-LTGFPKNHHGYMCG 318
>gnl|CDD|216547 pfam01518, PolyG_pol, Sigma NS protein. This viral protein has a
poly(C)-dependent poly(G) polymerase activity.
Length = 366
Score = 27.1 bits (60), Expect = 6.3
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 10 RGFDSHPGRILSRWDSVRSGNGGLSSILSSFSLRFR 45
+G +P +++ +W +RSG+ ++ SS S+ R
Sbjct: 312 KGLRMNPRQVMRKWSEIRSGSDSVA--TSSLSISLR 345
>gnl|CDD|220578 pfam10113, Fibrillarin_2, Fibrillarin-like archaeal protein.
Members of this family of proteins include archaeal
fibrillarin homologs.
Length = 505
Score = 27.1 bits (60), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 169 CQVDLTGGLDQVYLSGLPVPRHGQTCG 195
C+V L GL+ + L+G P HG CG
Sbjct: 293 CRVGLRAGLNAI-LTGFPKNHHGYMCG 318
>gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein
family. EF1 is responsible for the GTP-dependent
binding of aminoacyl-tRNAs to the ribosomes. EF1 is
composed of four subunits: the alpha chain which binds
GTP and aminoacyl-tRNAs, the gamma chain that probably
plays a role in anchoring the complex to other cellular
components and the beta and delta (or beta') chains.
This subfamily is the alpha subunit, and represents the
counterpart of bacterial EF-Tu for the archaea
(aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha
interacts with the actin of the eukaryotic cytoskeleton
and may thereby play a role in cellular transformation
and apoptosis. EF-Tu can have no such role in bacteria.
In humans, the isoform eEF1A2 is overexpressed in 2/3 of
breast cancers and has been identified as a putative
oncogene. This subfamily also includes Hbs1, a G protein
known to be important for efficient growth and protein
synthesis under conditions of limiting translation
initiation in yeast, and to associate with Dom34. It has
been speculated that yeast Hbs1 and Dom34 proteins may
function as part of a complex with a role in gene
expression.
Length = 219
Score = 26.7 bits (60), Expect = 8.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 57 VKPFLKKCIFLNQNLYFLP 75
V PFLKK + +++ F+P
Sbjct: 166 VSPFLKKVGYNPKDVPFIP 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.418
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,572,304
Number of extensions: 965761
Number of successful extensions: 634
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 14
Length of query: 208
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 115
Effective length of database: 6,812,680
Effective search space: 783458200
Effective search space used: 783458200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)