RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17459
         (208 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.099
 Identities = 45/260 (17%), Positives = 81/260 (31%), Gaps = 99/260 (38%)

Query: 8   LG-RGFDSHPGRILS---RWDSVRSGNGGLSSILS--------------SFSLRFRDDKT 49
           +G R ++++P   L      DS+ +  G  S +LS                +      K 
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365

Query: 50  LAVTV-----------PP------------VK----------PFLK-KCIFLNQNLYFLP 75
           + +++           PP             K          PF + K  F N+   FLP
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR---FLP 422

Query: 76  ---P-------GYNYKEKPNLLAQETQSLACVLRI-LFKMATSEQMRPSWGSIEQQLIGV 124
              P         +     +L+       A  ++I ++       +R   GSI ++++  
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV-- 480

Query: 125 NQEALQYFLSLQYEMHRDAWTSLLLLILTKILKMSDDKVRPATHCQVDL-TGGLDQVYLS 183
             + +     ++  +    W +                   ATH  +D   GG      S
Sbjct: 481 --DCI-----IRLPVK---WETTTQF--------------KATHI-LDFGPGG-----AS 510

Query: 184 GLPVPRHGQTCGKGMAELVV 203
           GL V  H    G G+  +V 
Sbjct: 511 GLGVLTHRNKDGTGVRVIVA 530


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.1 bits (72), Expect = 0.13
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 52/181 (28%)

Query: 19  ILSRWDSVRSGNGGLSSILSSFSLRFRDDKTLAVT-----VPPVKPFLKKCIFLNQNLYF 73
           +L    +V++     +   ++F+L     K L  T        +       I L+ +   
Sbjct: 249 VL---LNVQN-----AKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHH--- 294

Query: 74  LPPGYNYKEKPNLLAQ----ETQSLACVLRILFKMATSEQMRPSWGSIEQQLIGVNQEAL 129
                   E  +LL +      Q L              ++     +   + + +  E++
Sbjct: 295 -SMTLTPDEVKSLLLKYLDCRPQDL------------PREVL----TTNPRRLSIIAESI 337

Query: 130 QYFLSLQYEMHRDAWTSLLLLILTKILKMSDDKVRPAT--HCQVDLTGGLDQVYLSGLPV 187
           +  L+       D W  +    LT I++ S + + PA        L+     V+     +
Sbjct: 338 RDGLA-----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-----VFPPSAHI 387

Query: 188 P 188
           P
Sbjct: 388 P 388


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 29.1 bits (65), Expect = 1.2
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 7/31 (22%)

Query: 155 ILKMSDDKVRPATHCQ-----VDLTGGLDQV 180
           +L +   +V     CQ      DL GGL  V
Sbjct: 706 LLGLLTPEVV--ELCQKSPVMADLNGGLQFV 734



 Score = 27.9 bits (62), Expect = 3.1
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 25/61 (40%)

Query: 28   SGNGGLSSILSSFSLRFRDDKTLAVTVPPVKPFLKKCIFLNQNLYFLPPGYNYKEKPNLL 87
            SG GG+S++   F  RF+D+        PV+               L   +      N +
Sbjct: 1050 SGMGGVSALRGMFKDRFKDE--------PVQND------------ILQESF-----INTM 1084

Query: 88   A 88
            +
Sbjct: 1085 S 1085


>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A
           rhogap, protein phosphorylation, alternative splicing,
           anti-oncogene, cell cycle; NMR {Homo sapiens}
          Length = 69

 Score = 25.7 bits (56), Expect = 3.1
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 115 GSIEQQLIGVNQEALQYFLSLQYEMHRDAWTSL 147
           G++  Q I   ++  ++ +S   + H + W S+
Sbjct: 1   GAMGSQQIATAKDKYEWLVSRIVKNHNENWLSV 33


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,130,057
Number of extensions: 169850
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 5
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)