BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17460
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 13/194 (6%)
Query: 16 NFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFC 75
F NPKV LEQY TP + A+ +L + + DI+GK V DLG G+G+L++G++LLGA
Sbjct: 17 GFKNPKVWLEQYRTPGNAASELLW-LAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEV 75
Query: 76 FALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNC 135
+E DKE +D+ I+N EF+ + +++E F +VD VI NPPFG++
Sbjct: 76 ICVEVDKEAVDVLIENLGEFK-GKFKVFIGDVSE-------FNSRVDIVIXNPPFGSQRK 127
Query: 136 GIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM--KYDLNQSYKF 193
D F+ A +IS VVYS+H + + + I+ F V + K ++ + F
Sbjct: 128 HADRPFLLKAFEISDVVYSIH--LAKPEVRRFIEKFSWEHGFVVTHRLTTKIEIPLQFFF 185
Query: 194 HKKSLHDIEVDLLR 207
H+K L I VD+ R
Sbjct: 186 HRKKLERITVDIYR 199
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 8 QYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGS 67
Q LQQ NF N +LEQY T AA L I N+ N I G++V+D G G+GIL GS
Sbjct: 15 QKLQQQG-NFKN---YLEQYPTDASTAAYFLIEIYNDGN-IGGRSVIDAGTGNGILACGS 69
Query: 68 ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127
LLGA+ A + D + + E NC + F + D S K DT I N
Sbjct: 70 YLLGAESVTAFDIDPDAI--------ETAKRNCGGVNFXV----ADVSEISGKYDTWIXN 117
Query: 128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNV 174
PPFG+ D AF+ A + S +YS+ R+ + ++ A +V
Sbjct: 118 PPFGSVVKHSDRAFIDKAFETSXWIYSIGNAKARDFLRREFSARGDV 164
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 44 NYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF-EITNCDA 102
N + +GKTVLD+G GSGIL S GA +A+E K D+ + N D
Sbjct: 58 NKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK-----MADHARALVKANNLDH 112
Query: 103 ILFEINEKSLDSSVFKQKVDTVI 125
I+ E+ E S++ +KVD +I
Sbjct: 113 IV-EVIEGSVEDISLPEKVDVII 134
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
T I N+ D K VLD+GCGSGIL+F + GA +A+E
Sbjct: 36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA 81
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
T I N+ D K VLD+GCGSGIL+F + GA +A+E
Sbjct: 32 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA 77
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
T I N+ D K VLD+GCGSGIL+F + GA +A+E
Sbjct: 31 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA 76
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With
S-Adenosyl- Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With
S-Adenosyl- Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With
S-Adenosyl- Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With
S-Adenosyl- Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
T I N+ D K VLD+GCGSGIL+F + GA +A+E
Sbjct: 27 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA 72
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD 81
T I N+ D K VLD+GCGSGIL+F + GA +A+E
Sbjct: 144 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAS 190
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALE-CDKEILDIFIDNKNEFEITNCDA 102
I GKTV +LG G+G+++ + L GAD A + D EIL+ N E +C +
Sbjct: 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSS 133
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80
I N+ + GKTVLD+G G+GIL+ GA +A+E
Sbjct: 75 ILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEA 114
>pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
Length = 445
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 27/138 (19%)
Query: 16 NFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFC 75
N + K QY TP L + I N G+TV D CG+G G +L D+
Sbjct: 142 NGQDKKSGAGQYFTPRPLIQAXVDCI----NPQXGETVCDPACGTG----GFLLTAYDYX 193
Query: 76 FALECDKEILDIFIDNKNEFEITNCDAI--LFEIN---------------EKSLDSSVFK 118
KE D F+ +K + N + L N E SL+
Sbjct: 194 KGQSASKEKRD-FLRDKALHGVDNTPLVVTLASXNLYLHGIGTDRSPIVCEDSLEKEP-S 251
Query: 119 QKVDTVIMNPPFGTRNCG 136
VD ++ NPPFGTR G
Sbjct: 252 TLVDVILANPPFGTRPAG 269
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 37 ILHTIQNNYN--DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKN- 93
+L +Q + G+ VLDLG G G LT +GA+ + ++ + K
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVV---GVEDDLASVLSLQKGL 275
Query: 94 EFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF---GTRNCGIDLAFVQYAA 146
E A+ +++E + + F D ++ NPPF G + AFV AA
Sbjct: 276 EANALKAQALHSDVDEALTEEARF----DIIVTNPPFHVGGAVILDVAQAFVNVAA 327
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 37 ILHTIQNNYN--DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKN- 93
+L +Q + G+ VLDLG G G LT +GA+ + ++ + K
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVV---GVEDDLASVLSLQKGL 275
Query: 94 EFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF---GTRNCGIDLAFVQYAA 146
E A+ +++E + + F D ++ NPPF G + AFV AA
Sbjct: 276 EANALKAQALHSDVDEALTEEARF----DIIVTNPPFHVGGAVILDVAQAFVNVAA 327
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 24 LEQYHTPPHL-----AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFAL 78
EQY P AA H ++ D + KTVLDLGCG G + GA +
Sbjct: 14 FEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGI 73
Query: 79 ECDKEIL 85
+ + +L
Sbjct: 74 DLSERML 80
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 29 TPPHLAAT----------ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL--GADFCF 76
TP HLAA + H N +DI G+T L L G L +LL GAD
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 77 ALECDKEILDIFIDNKNE 94
+ K DI IDN NE
Sbjct: 109 QDKFGKTAFDISIDNGNE 126
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 53 VLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL 112
VLD+GCG+G+L+ FA K L + + E + + +
Sbjct: 200 VLDVGCGAGVLS---------VAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVF 250
Query: 113 DSSVF---KQKVDTVIMNPPF 130
S+VF K + D +I NPPF
Sbjct: 251 ASNVFSEVKGRFDXIISNPPF 271
>pdb|1K24|A Chain A, Crystal Structure Of The Opca Outer Membrane
AdhesinINVASIN FROM Neisseria Meningitidis
pdb|2VDF|A Chain A, Structure Of The Opca Adhesion From Neisseria Meningitidis
Determined By Crystallization From The Cubic Mesophase
Length = 253
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 135 CGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQA-----FKNVEQVDVIAEMKYDLNQ 189
G L F I ++LH S+R+S L K+ A N ++ +E+K+DLN
Sbjct: 110 VGAGLGFESSKDSIKTTKHTLH--SSRQSWLAKVHADLLSQLGNGWYINPWSEVKFDLNS 167
Query: 190 SYKFH 194
YK +
Sbjct: 168 RYKLN 172
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 13 LTFNFSNPKVHLEQYHTPPHLAATILH-----TIQNNYNDID-----GKTVLDLGCGSGI 62
LT N ++ + HTP HLAA + H + N D++ G+T L L +
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADH 92
Query: 63 LTFGSILL--GADFCFALECDKEILDIFIDNKNE 94
L +LL GAD + K DI IDN NE
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
Methyltransferase
Length = 189
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 38 LHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI 97
L I D+ G VLDL GSG L ++ GA +E D+ + N +
Sbjct: 33 LFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL 92
Query: 98 TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130
+ A L ++ ++ VD V+ +PP+
Sbjct: 93 SG--ATLRRGAVAAVVAAGTTSPVDLVLADPPY 123
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 51 KTVLDLGCGSGILTFGSILLGADFCFALECDK---EILDIFIDNKNEFEITNCDAILFEI 107
K VLD+GCG+GIL+ + GA A++ + + +DI NK E D I+ I
Sbjct: 47 KVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDIIRLNKLE------DTIVL-I 99
Query: 108 NEKSLDSSVFKQKVDTVI 125
K + S+ +KVD +I
Sbjct: 100 KGKIEEVSLPVEKVDVII 117
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 51 KTVLDLGCGSGILTFGSI------LLGADFCFALECDKEILDI 87
K VLD+GCG+GIL+ + ++G D +E KE++++
Sbjct: 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVEL 82
>pdb|2FHP|A Chain A, Crystal Structure Of Putative Methylase From Enterococcus
Faecalis
pdb|2FHP|B Chain B, Crystal Structure Of Putative Methylase From Enterococcus
Faecalis
Length = 187
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN------KNEFEITNCDA 102
DG LDL GSG L ++ G D +E + L + +N +FE+ DA
Sbjct: 44 DGGXALDLYSGSGGLAIEAVSRGXDKSICIEKNFAALKVIKENIAITKEPEKFEVRKXDA 103
Query: 103 --ILFEINEKSLDSSVFKQKVDTVIMNPPF 130
L + E+ L + D V+++PP+
Sbjct: 104 NRALEQFYEEKL-------QFDLVLLDPPY 126
>pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGIL 63
Y P HL A+I + + ++DG +VLD CGSG +
Sbjct: 196 YDHPAHLKASIANAMIE-LAELDGGSVLDPMCGSGTI 231
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 13 LTFNFSNPKVHLEQYHTPPHLAATIL----------HTIQNNYNDIDGKTVLDLGCGSGI 62
L N ++ H +Q TP HLAA I H N D DG T L L +G
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH 92
Query: 63 LTFGSILL--GADF 74
L +LL GAD
Sbjct: 93 LEIVEVLLKYGADV 106
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 51 KTVLDLGCGSGILTFGSILLGADFCFALECDK---EILDIFIDNKNEFEIT 98
K VLD+GCG+GIL+ + GA ++ + + +DI NK E IT
Sbjct: 66 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTIT 116
>pdb|3HYJ|A Chain A, Crystal Structure Of The N-Terminal Laglidadg Domain Of
Duf199WHIA
pdb|3HYJ|D Chain D, Crystal Structure Of The N-Terminal Laglidadg Domain Of
Duf199WHIA
Length = 198
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 111 SLDSSVFKQKVDTVIMNPPFGTRNCGID--LAFVQYAADI----SKVVYSLHKTSTRESI 164
SL F +++ ++N PFG+R I L F++ D+ +V+SLH + +
Sbjct: 3 SLLRRTFSEEIKEELVNVPFGSREEVISELLGFIKARGDLDVKSRHIVFSLHSFAASRRL 62
Query: 165 LKKIQAFKNVEQVDVIAEMKYDLNQSY 191
L + + + ++I E +++ + Y
Sbjct: 63 L-NLMKYLSKPVSEIIVEKSHNIKKRY 88
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEI---LDIFIDNKNEFEITNCDAILFEIN 108
VL++G G GILT + A + +E DK + + + N EI DA+ ++N
Sbjct: 53 VVLEIGLGKGILT-EELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLN 111
Query: 109 EKSLDSSVFKQKVDTVIMNP-PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKK 167
+ LD + + I +P F G DLA + Y + +K + + T +
Sbjct: 112 K--LDFNKVVANLPYQISSPITFKLIKRGFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVA 169
Query: 168 IQAFKNVEQV 177
+Q+ +VE V
Sbjct: 170 VQSRADVEIV 179
>pdb|3HYI|A Chain A, Crystal Structure Of Full-length Duf199/whia From
Thermatoga Maritima
Length = 295
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 111 SLDSSVFKQKVDTVIMNPPFGTRNCGID--LAFVQYAADI----SKVVYSLHKTSTRESI 164
SL F +++ ++N PFG+R I L F++ D+ +V+SLH + +
Sbjct: 3 SLLRRTFSEEIKEELVNVPFGSREEVISELLGFIKARGDLDVKSRHIVFSLHSFAASRRL 62
Query: 165 LKKIQAFKNVEQVDVIAEMKYDLNQSY 191
L + + + ++I E +++ + Y
Sbjct: 63 L-NLMKYLSKPVSEIIVEKSHNIKKRY 88
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEI---LDIFIDNKNEFEITNCDAILFEIN 108
VL++G G GILT + A + +E DK + + + N EI DA+ ++N
Sbjct: 26 VVLEIGLGKGILT-EELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLN 84
Query: 109 EKSLDSSVFKQKVDTVIMNP-PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKK 167
+ LD + + I +P F G DLA + Y + +K + + T +
Sbjct: 85 K--LDFNKVVANLPYQISSPITFKLIKRGFDLAVLMYQYEFAKRMVAKEGTKDYGRLSVA 142
Query: 168 IQAFKNVEQV 177
+Q+ +VE V
Sbjct: 143 VQSRADVEIV 152
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEI---LDIFIDNKNEFEITNCDAILFEIN 108
VL++G G GILT + A + +E DK + + + N EI DA+ ++N
Sbjct: 24 VVLEIGLGKGILT-EELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLN 82
Query: 109 EKSLDSSVFKQKVDTVIMNP-PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKK 167
+ LD + + I +P F G DLA + Y + +K + + T +
Sbjct: 83 K--LDFNKVVANLPYQISSPITFKLIKRGFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVA 140
Query: 168 IQAFKNVEQV 177
+Q+ +VE V
Sbjct: 141 VQSRADVEIV 150
>pdb|2ESR|A Chain A, Conserved Hypothetical Protein- Streptococcus Pyogenes
pdb|2ESR|B Chain B, Conserved Hypothetical Protein- Streptococcus Pyogenes
Length = 177
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN 108
+G VLDL GSG L ++ G +E +++ I DN + N +L
Sbjct: 31 NGGRVLDLFAGSGGLAIEAVSRGXSAAVLVEKNRKAQAIIQDNIIXTKAENRFTLLKXEA 90
Query: 109 EKSLDSSVFKQKVDTVIMNPPF 130
E+++D + D V ++PP+
Sbjct: 91 ERAIDC--LTGRFDLVFLDPPY 110
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 29 TPPHLAATILH----------TIQNNYNDIDGKTVLDLGCGSGILTFGSILL--GADFCF 76
TP HLAA H N D+ G T L L G L +LL GAD
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 77 ALECDKEILDIFIDNKNEFEITNC 100
+ K DI IDN NE +C
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAKSC 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 29 TPPHLAATILHT------IQN----NYNDIDGKTVLDLGCGSGILTFGSILL--GADFCF 76
TP LAA H ++N N ND++G T L L G L +LL GAD
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Query: 77 ALECDKEILDIFIDNKNE 94
+ K DI IDN NE
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
>pdb|3M70|A Chain A, Crystal Structure Of Tehb From Haemophilus Influenzae
Length = 286
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 53 VLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL 112
VLDLGCG G + LLG D + I F++ E E N L++IN ++
Sbjct: 124 VLDLGCGQGRNSLYLSLLGYDVTSWDHNENSI--AFLNETKEKENLNISTALYDINAANI 181
Query: 113 DSS--------VF----KQKVDTVIMNPPFGTRNCGIDLAFVQYAAD 147
+ VF +++V ++I N T G +L + D
Sbjct: 182 QENYDFIVSTVVFXFLNRERVPSIIKNXKEHTNVGGYNLIVAAXSTD 228
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 51 KTVLDLGCGSGILTFGSILLGADFCFALEC 80
K VLD+G G+GIL + GA +EC
Sbjct: 68 KVVLDVGSGTGILCMFAAKAGARKVIGIEC 97
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 51 KTVLDLGCGSGILTFGSILLGADFCFALEC 80
K VLD+G G+GIL + GA +EC
Sbjct: 62 KVVLDVGSGTGILCMFAAKAGARKVIGIEC 91
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 51 KTVLDLGCGSGILTFGSILLGADFCFALEC 80
K VLD+G G+GIL + GA +EC
Sbjct: 59 KVVLDVGSGTGILCMFAAKAGARKVIGIEC 88
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 51 KTVLDLGCGSGILTFGSILLGADFCFALEC 80
K VLD+G G+GIL + GA +EC
Sbjct: 72 KVVLDVGSGTGILCMFAAKAGARKVIGIEC 101
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIF 88
T + A + + N +D+ V+D+GCGSG T I F +A++ +++
Sbjct: 19 TKEEIRAVSIGKLNLNKDDV----VVDVGCGSGGXTV-EIAKRCKFVYAIDYLDGAIEVT 73
Query: 89 IDNKNEFEITNCDAI 103
N +F I NC I
Sbjct: 74 KQNLAKFNIKNCQII 88
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADF--CFALECDKEILDIFID 90
++ +L I N +G TV+++G G+G LT +LL + +E D+E+++
Sbjct: 15 VSEGVLKKIAEELNIEEGNTVVEVGGGTGNLT--KVLLQHPLKKLYVIELDREMVENLKS 72
Query: 91 NKNE-FEITNCDAILF 105
+E E+ N DA F
Sbjct: 73 IGDERLEVINEDASKF 88
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADF--CFALECDKEILDIFID 90
++ +L I N +G TV+++G G+G LT +LL + +E D+E+++
Sbjct: 14 VSEGVLKKIAEELNIEEGNTVVEVGGGTGNLT--KVLLQHPLKKLYVIELDREMVENLKS 71
Query: 91 NKNE-FEITNCDAILF 105
+E E+ N DA F
Sbjct: 72 IGDERLEVINEDASKF 87
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 46 NDIDGKTVLDLGCGSGILT-----FGSILLGAD 73
N G+ +LDLGCG+G LT G+ +LG D
Sbjct: 54 NPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTD 86
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 10 LQQLTFNFSNPKV--HLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF 65
LQ++ +P+ H E +H P L I+N Y G +L G GI ++
Sbjct: 141 LQEVKMRILDPQACKHFEDFHQEPQLCVGNPKKIRNVYKGDSGGPLLCAGIAQGIASY 198
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 49 DGKTVLDLGCGSGI-LTFGSILLGADF-CFALECDKEILDIFIDNKNEFEITNCDAILFE 106
+G TVLD+G G+G L + S ++G +A++ +E+++ + N+ + N + + E
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSE 96
Query: 107 INEKSL 112
N+ L
Sbjct: 97 ENKIPL 102
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 46 NDIDGKTVLDLGCGSG 61
++G TVLDLGCG+G
Sbjct: 80 GSLEGATVLDLGCGTG 95
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 130 FGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQA 170
FG +CG + FV + D + V + S+++++LKK+
Sbjct: 81 FGVYDCGNKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDG 121
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase
From Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase
From Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 52 TVLDLGCGSGILTFGSILLGADFCFALECDKE 83
TV D+G GSGIL + LGA A + E
Sbjct: 63 TVADVGTGSGILAIAAHKLGAKSVLATDISDE 94
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFA--LECDKEILDI 87
PH+ A L + + ++ G LD+G GSGILT CFA + C +++ I
Sbjct: 61 PHMHAYALELLFDQLHE--GAKALDVGSGSGILT---------ACFARMVGCTGKVIGI 108
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 53 VLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL 112
+LDLGCG G++ I L + D I + +N ++ N D + L
Sbjct: 56 ILDLGCGYGVI---GIALADEVKSTTXADINRRAIKLAKEN-IKLNNLDNYDIRVVHSDL 111
Query: 113 DSSVFKQKVDTVIMNPPF 130
+V +K + +I NPP
Sbjct: 112 YENVKDRKYNKIITNPPI 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,312,678
Number of Sequences: 62578
Number of extensions: 249490
Number of successful extensions: 856
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 59
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)