Query psy17460
Match_columns 216
No_of_seqs 127 out of 2911
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 23:08:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2263 Predicted RNA methylas 100.0 4.9E-33 1.1E-37 209.5 22.1 197 4-212 2-198 (198)
2 KOG3420|consensus 100.0 3.9E-32 8.5E-37 195.3 11.6 185 1-211 1-185 (185)
3 PF03602 Cons_hypoth95: Conser 99.8 1.2E-18 2.6E-23 134.4 11.5 154 24-207 19-183 (183)
4 COG4123 Predicted O-methyltran 99.8 1.1E-17 2.3E-22 133.2 15.1 155 49-213 44-215 (248)
5 PRK10909 rsmD 16S rRNA m(2)G96 99.8 1.6E-17 3.5E-22 129.6 15.7 153 26-209 33-191 (199)
6 PF05175 MTS: Methyltransferas 99.8 2.5E-17 5.4E-22 126.0 14.4 125 33-187 19-144 (170)
7 TIGR00138 gidB 16S rRNA methyl 99.8 4E-17 8.6E-22 125.9 14.6 153 5-170 3-156 (181)
8 COG0742 N6-adenine-specific me 99.7 6.1E-17 1.3E-21 123.4 14.4 159 24-209 20-186 (187)
9 TIGR00095 RNA methyltransferas 99.7 1.1E-16 2.3E-21 124.3 14.0 153 24-206 27-188 (189)
10 COG2890 HemK Methylase of poly 99.7 1.9E-16 4.1E-21 129.9 14.5 128 52-191 113-246 (280)
11 TIGR00452 methyltransferase, p 99.7 6.1E-16 1.3E-20 128.5 17.0 125 3-133 75-201 (314)
12 TIGR01177 conserved hypothetic 99.7 2E-16 4.4E-21 133.0 14.2 136 27-184 160-295 (329)
13 TIGR03533 L3_gln_methyl protei 99.7 2.7E-16 5.8E-21 129.5 14.3 128 49-187 121-255 (284)
14 PRK14966 unknown domain/N5-glu 99.7 2.7E-16 5.9E-21 133.8 14.6 147 33-191 237-389 (423)
15 PF13659 Methyltransf_26: Meth 99.7 9.7E-17 2.1E-21 114.9 9.3 114 50-183 1-115 (117)
16 PHA03412 putative methyltransf 99.7 2.8E-16 6E-21 124.2 12.6 107 11-133 17-127 (241)
17 TIGR00536 hemK_fam HemK family 99.7 6.3E-16 1.4E-20 127.5 14.4 130 51-191 116-252 (284)
18 TIGR00537 hemK_rel_arch HemK-r 99.7 1.8E-15 4E-20 116.5 14.7 125 48-186 18-143 (179)
19 PRK15001 SAM-dependent 23S rib 99.7 2.5E-15 5.4E-20 127.5 16.1 112 49-186 228-343 (378)
20 PRK11805 N5-glutamine S-adenos 99.7 1.1E-15 2.3E-20 127.2 12.7 130 51-189 135-269 (307)
21 PRK14967 putative methyltransf 99.7 2.7E-15 5.9E-20 119.6 13.6 92 35-133 23-114 (223)
22 TIGR03704 PrmC_rel_meth putati 99.7 2.3E-15 5.1E-20 121.8 13.3 148 32-190 68-223 (251)
23 COG2813 RsmC 16S RNA G1207 met 99.7 3.1E-15 6.7E-20 121.5 13.8 109 49-184 158-267 (300)
24 PF01170 UPF0020: Putative RNA 99.7 1E-15 2.2E-20 117.9 10.3 97 33-133 12-119 (179)
25 TIGR03534 RF_mod_PrmC protein- 99.6 4.1E-15 8.8E-20 120.2 14.2 134 49-190 87-224 (251)
26 COG2226 UbiE Methylase involve 99.6 4.7E-15 1E-19 118.0 14.2 104 48-155 50-155 (238)
27 PRK01544 bifunctional N5-gluta 99.6 2.5E-15 5.4E-20 132.7 13.7 132 49-191 138-277 (506)
28 PF12847 Methyltransf_18: Meth 99.6 3.7E-15 7.9E-20 105.8 11.7 108 49-183 1-111 (112)
29 PF13847 Methyltransf_31: Meth 99.6 5.8E-15 1.3E-19 110.8 12.7 82 49-133 3-86 (152)
30 PF01209 Ubie_methyltran: ubiE 99.6 3.1E-15 6.6E-20 119.7 11.0 102 48-153 46-150 (233)
31 COG2242 CobL Precorrin-6B meth 99.6 1.6E-14 3.4E-19 109.7 14.1 119 28-184 17-136 (187)
32 COG1041 Predicted DNA modifica 99.6 3.7E-15 8E-20 123.2 11.2 129 28-184 180-311 (347)
33 PRK09328 N5-glutamine S-adenos 99.6 1.3E-14 2.7E-19 119.0 12.8 148 36-191 95-246 (275)
34 PHA03411 putative methyltransf 99.6 1.8E-14 3.9E-19 116.4 12.9 94 24-133 45-139 (279)
35 PRK09489 rsmC 16S ribosomal RN 99.6 1.8E-14 4E-19 121.3 13.0 108 50-185 197-305 (342)
36 PRK15068 tRNA mo(5)U34 methylt 99.6 8.7E-14 1.9E-18 116.5 16.4 148 3-182 76-225 (322)
37 TIGR02085 meth_trns_rumB 23S r 99.6 3.1E-14 6.6E-19 121.6 13.8 124 27-158 211-336 (374)
38 PRK03522 rumB 23S rRNA methylu 99.6 3.7E-14 8.1E-19 118.6 13.8 126 27-160 151-278 (315)
39 PRK00107 gidB 16S rRNA methylt 99.6 2.4E-13 5.2E-18 105.3 17.0 105 19-128 14-120 (187)
40 PRK11207 tellurite resistance 99.6 6E-14 1.3E-18 109.8 13.2 78 49-132 30-107 (197)
41 TIGR00477 tehB tellurite resis 99.6 4.6E-14 9.9E-19 110.3 12.0 78 49-133 30-107 (195)
42 PLN02672 methionine S-methyltr 99.6 4.2E-14 9.1E-19 132.5 13.7 137 49-191 118-286 (1082)
43 PRK15128 23S rRNA m(5)C1962 me 99.6 5.8E-14 1.2E-18 120.4 13.1 83 49-133 220-306 (396)
44 PRK08287 cobalt-precorrin-6Y C 99.6 2E-13 4.3E-18 105.9 14.8 92 28-129 14-106 (187)
45 TIGR00080 pimt protein-L-isoas 99.6 2.8E-13 6.1E-18 107.4 16.0 81 46-130 74-156 (215)
46 PRK14968 putative methyltransf 99.5 2.5E-13 5.4E-18 105.0 14.8 140 29-184 7-149 (188)
47 TIGR02752 MenG_heptapren 2-hep 99.5 2.7E-13 5.9E-18 108.4 14.8 84 46-133 42-127 (231)
48 PRK13944 protein-L-isoaspartat 99.5 6E-13 1.3E-17 104.7 16.1 110 46-191 69-181 (205)
49 COG2265 TrmA SAM-dependent met 99.5 2.1E-13 4.6E-18 117.7 14.3 128 27-161 271-401 (432)
50 PRK13942 protein-L-isoaspartat 99.5 7.3E-13 1.6E-17 104.7 16.0 96 26-129 57-154 (212)
51 COG0116 Predicted N6-adenine-s 99.5 1.2E-13 2.7E-18 115.7 11.7 107 23-133 165-312 (381)
52 PLN02244 tocopherol O-methyltr 99.5 5E-13 1.1E-17 112.9 15.6 100 48-151 117-218 (340)
53 PRK13168 rumA 23S rRNA m(5)U19 99.5 2.5E-13 5.4E-18 118.6 14.1 123 28-158 276-402 (443)
54 PRK14103 trans-aconitate 2-met 99.5 1.2E-13 2.7E-18 112.1 11.2 105 39-155 19-125 (255)
55 COG2264 PrmA Ribosomal protein 99.5 1.2E-13 2.6E-18 112.9 10.8 96 27-128 141-237 (300)
56 TIGR02469 CbiT precorrin-6Y C5 99.5 8.8E-13 1.9E-17 94.9 14.3 103 48-182 18-121 (124)
57 PRK11783 rlmL 23S rRNA m(2)G24 99.5 2.6E-13 5.7E-18 124.3 14.3 119 49-185 538-658 (702)
58 KOG2904|consensus 99.5 3.7E-13 8E-18 107.2 13.2 148 29-184 129-286 (328)
59 PRK14896 ksgA 16S ribosomal RN 99.5 1.9E-13 4.2E-18 111.2 11.3 102 19-133 2-104 (258)
60 PRK10258 biotin biosynthesis p 99.5 6E-13 1.3E-17 107.8 14.1 110 32-151 25-135 (251)
61 PF08003 Methyltransf_9: Prote 99.5 8.4E-13 1.8E-17 107.4 14.7 152 3-185 69-221 (315)
62 PF06325 PrmA: Ribosomal prote 99.5 1.5E-13 3.3E-18 113.1 10.5 93 27-128 140-233 (295)
63 PRK00274 ksgA 16S ribosomal RN 99.5 2.9E-13 6.3E-18 111.0 11.9 104 18-133 14-118 (272)
64 TIGR00479 rumA 23S rRNA (uraci 99.5 7.1E-13 1.5E-17 115.4 14.6 122 30-158 273-398 (431)
65 smart00650 rADc Ribosomal RNA 99.5 2.4E-13 5.2E-18 103.8 10.1 78 48-132 12-89 (169)
66 PF09445 Methyltransf_15: RNA 99.5 7.2E-13 1.6E-17 99.6 12.2 130 51-184 1-147 (163)
67 PRK01683 trans-aconitate 2-met 99.5 7.1E-13 1.5E-17 107.8 12.4 99 46-154 28-128 (258)
68 TIGR00406 prmA ribosomal prote 99.5 1.1E-12 2.4E-17 108.4 13.4 96 27-129 138-234 (288)
69 PTZ00338 dimethyladenosine tra 99.5 4.4E-13 9.6E-18 110.7 10.8 104 19-133 9-114 (294)
70 PLN02233 ubiquinone biosynthes 99.5 2.1E-12 4.6E-17 105.3 14.7 103 48-154 72-180 (261)
71 PF02353 CMAS: Mycolic acid cy 99.5 1E-12 2.2E-17 107.5 12.8 109 17-133 24-140 (273)
72 PRK00312 pcm protein-L-isoaspa 99.5 4.2E-12 9.1E-17 100.4 16.0 115 29-184 62-176 (212)
73 PF02384 N6_Mtase: N-6 DNA Met 99.5 2.8E-13 6.1E-18 113.1 9.7 109 19-133 20-138 (311)
74 PRK10901 16S rRNA methyltransf 99.5 7E-13 1.5E-17 115.2 12.3 84 46-132 241-325 (427)
75 COG2227 UbiG 2-polyprenyl-3-me 99.5 4.9E-13 1.1E-17 105.2 9.8 77 48-130 58-134 (243)
76 PRK11036 putative S-adenosyl-L 99.5 8.7E-13 1.9E-17 107.2 11.7 103 49-155 44-148 (255)
77 TIGR00446 nop2p NOL1/NOP2/sun 99.5 9.4E-13 2E-17 107.5 11.8 83 47-133 69-153 (264)
78 PF08241 Methyltransf_11: Meth 99.5 5.6E-13 1.2E-17 91.2 8.9 95 54-181 1-95 (95)
79 KOG1271|consensus 99.5 1.2E-11 2.6E-16 93.2 16.5 183 11-207 27-225 (227)
80 COG2518 Pcm Protein-L-isoaspar 99.4 3.2E-12 6.9E-17 99.2 13.7 133 23-196 50-183 (209)
81 COG2230 Cfa Cyclopropane fatty 99.4 2.8E-12 6.1E-17 104.1 13.7 110 32-148 55-165 (283)
82 PF05958 tRNA_U5-meth_tr: tRNA 99.4 2E-12 4.2E-17 109.7 13.4 126 28-159 176-313 (352)
83 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.4E-12 3E-17 105.5 11.9 79 49-133 56-138 (247)
84 PRK14902 16S rRNA methyltransf 99.4 1.1E-12 2.5E-17 114.5 12.0 82 48-132 249-332 (444)
85 PLN02396 hexaprenyldihydroxybe 99.4 1E-12 2.2E-17 109.7 11.1 99 48-151 130-230 (322)
86 PRK00121 trmB tRNA (guanine-N( 99.4 5.2E-13 1.1E-17 104.8 8.4 81 49-131 40-122 (202)
87 PRK00377 cbiT cobalt-precorrin 99.4 4.6E-12 1E-16 99.2 13.6 94 28-128 23-119 (198)
88 COG1092 Predicted SAM-dependen 99.4 1.8E-12 3.9E-17 110.1 12.1 83 49-133 217-303 (393)
89 PRK05031 tRNA (uracil-5-)-meth 99.4 3.7E-12 8.1E-17 108.4 14.0 131 30-171 188-332 (362)
90 PRK12335 tellurite resistance 99.4 3E-12 6.6E-17 105.8 13.0 78 49-133 120-197 (287)
91 PRK14904 16S rRNA methyltransf 99.4 3.8E-12 8.3E-17 111.2 14.3 82 47-133 248-331 (445)
92 PRK11727 23S rRNA mA1618 methy 99.4 1E-12 2.2E-17 109.3 10.0 83 49-133 114-202 (321)
93 PF13649 Methyltransf_25: Meth 99.4 7.2E-13 1.6E-17 92.5 7.8 76 53-133 1-81 (101)
94 PRK14903 16S rRNA methyltransf 99.4 2.1E-12 4.5E-17 112.2 12.3 85 46-133 234-320 (431)
95 PRK11783 rlmL 23S rRNA m(2)G24 99.4 2E-12 4.3E-17 118.6 12.3 108 24-133 164-316 (702)
96 PRK14901 16S rRNA methyltransf 99.4 2.8E-12 6E-17 111.7 12.4 85 46-132 249-337 (434)
97 PTZ00098 phosphoethanolamine N 99.4 3.3E-12 7.1E-17 104.2 12.1 80 46-131 49-128 (263)
98 TIGR02987 met_A_Alw26 type II 99.4 3.7E-12 7.9E-17 113.5 12.9 109 23-133 2-125 (524)
99 PF01135 PCMT: Protein-L-isoas 99.4 7.9E-12 1.7E-16 98.3 13.2 136 25-200 52-190 (209)
100 PLN03075 nicotianamine synthas 99.4 3.7E-11 8E-16 98.6 17.4 140 15-184 87-234 (296)
101 PRK11873 arsM arsenite S-adeno 99.4 7.1E-12 1.5E-16 102.7 13.2 101 47-151 75-178 (272)
102 TIGR00091 tRNA (guanine-N(7)-) 99.4 3.8E-12 8.3E-17 99.3 11.0 106 49-156 16-132 (194)
103 PF03848 TehB: Tellurite resis 99.4 1.6E-11 3.5E-16 94.9 13.9 79 48-133 29-107 (192)
104 TIGR02143 trmA_only tRNA (urac 99.4 7.5E-12 1.6E-16 106.1 13.2 130 31-171 180-323 (353)
105 PRK07402 precorrin-6B methylas 99.4 3.6E-11 7.8E-16 93.9 16.1 95 26-127 21-116 (196)
106 PRK06922 hypothetical protein; 99.4 4.9E-12 1.1E-16 112.8 12.4 121 48-184 417-538 (677)
107 TIGR00755 ksgA dimethyladenosi 99.4 3.5E-12 7.5E-17 103.6 10.6 102 19-133 2-107 (253)
108 PRK00517 prmA ribosomal protei 99.4 7.6E-12 1.7E-16 101.4 12.5 70 48-129 118-188 (250)
109 TIGR00563 rsmB ribosomal RNA s 99.4 5E-12 1.1E-16 109.9 12.1 85 47-133 236-322 (426)
110 TIGR00740 methyltransferase, p 99.4 2E-11 4.3E-16 98.2 14.0 79 49-133 53-135 (239)
111 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.4E-11 3.1E-16 104.5 13.4 84 48-133 121-205 (390)
112 PF10672 Methyltrans_SAM: S-ad 99.4 6.8E-12 1.5E-16 102.7 10.5 83 49-133 123-208 (286)
113 PLN02336 phosphoethanolamine N 99.3 2.2E-11 4.9E-16 107.3 14.3 81 48-133 265-345 (475)
114 TIGR03587 Pse_Me-ase pseudamin 99.3 1.9E-11 4.1E-16 96.1 12.1 93 49-151 43-136 (204)
115 COG4106 Tam Trans-aconitate me 99.3 2.6E-12 5.6E-17 99.2 6.9 78 46-133 27-105 (257)
116 TIGR02072 BioC biotin biosynth 99.3 1.7E-11 3.7E-16 98.0 11.8 77 49-133 34-111 (240)
117 PRK11705 cyclopropane fatty ac 99.3 5.7E-11 1.2E-15 101.8 14.2 112 37-182 155-266 (383)
118 COG0030 KsgA Dimethyladenosine 99.3 2.1E-11 4.5E-16 98.1 10.6 104 20-133 4-108 (259)
119 KOG1270|consensus 99.3 1.1E-11 2.4E-16 98.5 8.8 75 50-132 90-170 (282)
120 smart00828 PKS_MT Methyltransf 99.3 2.4E-11 5.3E-16 96.7 10.9 77 51-132 1-79 (224)
121 PLN02490 MPBQ/MSBQ methyltrans 99.3 6.2E-11 1.4E-15 99.5 13.4 97 49-152 113-211 (340)
122 PLN02781 Probable caffeoyl-CoA 99.3 6.3E-11 1.4E-15 95.1 12.7 106 48-184 67-179 (234)
123 KOG3191|consensus 99.3 1.6E-10 3.5E-15 87.0 13.8 121 49-181 43-166 (209)
124 PRK13943 protein-L-isoaspartat 99.3 1.1E-10 2.5E-15 97.4 14.0 79 46-128 77-157 (322)
125 PF08242 Methyltransf_12: Meth 99.3 3.3E-12 7.2E-17 88.7 3.8 98 54-179 1-99 (99)
126 TIGR02021 BchM-ChlM magnesium 99.3 1.3E-10 2.7E-15 92.3 13.4 78 48-133 54-132 (219)
127 PRK04266 fibrillarin; Provisio 99.3 2.1E-10 4.6E-15 91.4 14.6 118 31-154 55-174 (226)
128 KOG1499|consensus 99.3 2.8E-11 6.1E-16 99.9 9.4 109 47-183 58-167 (346)
129 PRK00216 ubiE ubiquinone/menaq 99.3 1.9E-10 4.1E-15 92.0 14.0 80 48-131 50-132 (239)
130 PRK05785 hypothetical protein; 99.3 1.8E-10 4E-15 91.9 13.5 102 33-148 37-139 (226)
131 PRK08317 hypothetical protein; 99.3 2.6E-10 5.6E-15 91.0 14.3 100 47-151 17-119 (241)
132 PRK05134 bifunctional 3-demeth 99.2 3.2E-10 6.9E-15 90.8 14.6 91 38-133 37-127 (233)
133 PF02475 Met_10: Met-10+ like- 99.2 4.1E-11 8.9E-16 93.5 9.2 79 48-131 100-180 (200)
134 PLN02585 magnesium protoporphy 99.2 2.8E-10 6.1E-15 94.8 14.7 93 32-133 128-225 (315)
135 PLN02336 phosphoethanolamine N 99.2 6.2E-11 1.4E-15 104.5 11.2 106 48-182 36-141 (475)
136 KOG1540|consensus 99.2 2.2E-10 4.8E-15 90.7 13.0 105 45-155 96-213 (296)
137 PF05401 NodS: Nodulation prot 99.2 4.7E-11 1E-15 91.6 8.6 75 49-131 43-117 (201)
138 COG2519 GCD14 tRNA(1-methylade 99.2 4.7E-10 1E-14 89.1 14.4 107 42-157 87-196 (256)
139 PRK00811 spermidine synthase; 99.2 2E-10 4.3E-15 94.7 12.8 79 48-129 75-159 (283)
140 KOG4300|consensus 99.2 3.9E-10 8.4E-15 86.7 13.2 111 52-191 79-191 (252)
141 PRK11188 rrmJ 23S rRNA methylt 99.2 2.7E-10 6E-15 89.8 12.9 106 48-182 50-164 (209)
142 KOG2671|consensus 99.2 5E-12 1.1E-16 103.6 2.8 129 46-181 205-352 (421)
143 COG2521 Predicted archaeal met 99.2 7.5E-12 1.6E-16 97.7 3.5 85 46-132 131-217 (287)
144 PF08704 GCD14: tRNA methyltra 99.2 5.2E-10 1.1E-14 89.9 14.2 124 40-171 31-159 (247)
145 PRK04457 spermidine synthase; 99.2 2.6E-10 5.6E-15 93.0 12.6 77 49-128 66-144 (262)
146 PRK10742 putative methyltransf 99.2 1E-09 2.2E-14 87.6 15.5 126 46-184 83-220 (250)
147 COG2520 Predicted methyltransf 99.2 2.7E-10 5.9E-15 95.1 12.2 93 49-151 188-281 (341)
148 PRK07580 Mg-protoporphyrin IX 99.2 7.6E-10 1.6E-14 88.3 14.4 78 48-133 62-140 (230)
149 smart00138 MeTrc Methyltransfe 99.2 2.5E-10 5.5E-15 93.2 11.4 109 49-185 99-244 (264)
150 PLN02476 O-methyltransferase 99.2 1E-09 2.2E-14 89.6 14.7 80 48-129 117-203 (278)
151 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 1E-09 2.2E-14 86.9 14.1 79 48-132 38-118 (223)
152 PRK11088 rrmA 23S rRNA methylt 99.2 5.3E-10 1.2E-14 91.7 12.7 109 33-157 70-182 (272)
153 cd02440 AdoMet_MTases S-adenos 99.2 4.8E-10 1E-14 76.8 10.6 103 52-182 1-103 (107)
154 KOG2187|consensus 99.2 2.6E-10 5.7E-15 98.2 10.9 124 27-157 361-491 (534)
155 TIGR03840 TMPT_Se_Te thiopurin 99.2 7.6E-10 1.7E-14 87.5 12.5 81 49-133 34-126 (213)
156 PRK06202 hypothetical protein; 99.2 5.6E-10 1.2E-14 89.4 11.9 97 48-151 59-160 (232)
157 PRK04338 N(2),N(2)-dimethylgua 99.2 3.7E-10 8E-15 96.6 11.2 90 50-149 58-148 (382)
158 KOG1500|consensus 99.2 2.9E-10 6.4E-15 93.2 10.0 78 46-129 174-252 (517)
159 TIGR02716 C20_methyl_CrtF C-20 99.1 9.4E-10 2E-14 91.7 13.2 79 46-131 146-226 (306)
160 PF01596 Methyltransf_3: O-met 99.1 8.8E-10 1.9E-14 86.5 12.0 79 49-129 45-130 (205)
161 PF13489 Methyltransf_23: Meth 99.1 6.1E-10 1.3E-14 83.6 10.7 97 48-185 21-117 (161)
162 KOG0820|consensus 99.1 4.9E-10 1.1E-14 89.5 10.4 104 20-133 32-136 (315)
163 TIGR01983 UbiG ubiquinone bios 99.1 1.3E-09 2.9E-14 86.5 13.1 82 48-133 44-125 (224)
164 PF01861 DUF43: Protein of unk 99.1 5.3E-09 1.2E-13 82.8 16.1 163 9-181 5-174 (243)
165 PLN02366 spermidine synthase 99.1 1.7E-09 3.6E-14 90.0 13.9 82 48-131 90-176 (308)
166 PRK03612 spermidine synthase; 99.1 5.6E-10 1.2E-14 99.3 11.8 82 48-132 296-385 (521)
167 PRK01581 speE spermidine synth 99.1 1E-09 2.2E-14 92.3 12.4 94 33-131 136-237 (374)
168 TIGR03438 probable methyltrans 99.1 2.8E-09 6E-14 88.7 14.7 84 49-134 63-152 (301)
169 PF05185 PRMT5: PRMT5 arginine 99.1 2.4E-10 5.2E-15 99.5 8.6 109 13-128 152-266 (448)
170 PF07021 MetW: Methionine bios 99.1 2.1E-10 4.5E-15 87.9 6.8 98 49-157 13-110 (193)
171 KOG2730|consensus 99.1 1.7E-10 3.6E-15 89.4 5.5 101 27-133 75-178 (263)
172 TIGR02081 metW methionine bios 99.1 1.3E-09 2.9E-14 84.9 10.3 96 49-155 13-108 (194)
173 PTZ00146 fibrillarin; Provisio 99.1 3E-09 6.5E-14 87.1 12.5 80 46-129 129-211 (293)
174 TIGR00308 TRM1 tRNA(guanine-26 99.1 2.1E-09 4.7E-14 91.5 12.0 92 51-151 46-139 (374)
175 TIGR00417 speE spermidine synt 99.0 5.7E-09 1.2E-13 85.6 13.3 82 48-132 71-157 (270)
176 PRK13255 thiopurine S-methyltr 99.0 5.1E-09 1.1E-13 83.1 11.9 78 49-130 37-126 (218)
177 COG4122 Predicted O-methyltran 99.0 6.4E-09 1.4E-13 81.9 12.2 79 48-128 58-140 (219)
178 PF00398 RrnaAD: Ribosomal RNA 99.0 1.5E-09 3.3E-14 88.5 9.0 104 19-131 3-108 (262)
179 COG3963 Phospholipid N-methylt 99.0 5.8E-09 1.3E-13 77.7 11.0 114 9-133 12-130 (194)
180 PRK11933 yebU rRNA (cytosine-C 99.0 9.5E-09 2.1E-13 89.9 14.2 84 47-133 111-196 (470)
181 KOG1541|consensus 99.0 1.4E-08 3E-13 79.0 11.8 140 32-184 35-189 (270)
182 PF02390 Methyltransf_4: Putat 99.0 3.9E-09 8.5E-14 82.3 8.6 105 50-156 18-133 (195)
183 TIGR00438 rrmJ cell division p 98.9 2.1E-08 4.6E-13 77.8 12.6 69 48-129 31-107 (188)
184 COG0144 Sun tRNA and rRNA cyto 98.9 1.1E-08 2.4E-13 86.9 11.0 97 32-133 142-242 (355)
185 PLN02823 spermine synthase 98.9 2.2E-08 4.7E-13 84.2 12.3 92 33-129 89-185 (336)
186 COG0220 Predicted S-adenosylme 98.9 9.4E-09 2E-13 81.7 9.5 103 51-155 50-163 (227)
187 PRK04148 hypothetical protein; 98.9 5.8E-08 1.2E-12 70.7 12.2 71 46-127 13-84 (134)
188 PF10294 Methyltransf_16: Puta 98.9 3.4E-08 7.5E-13 75.6 11.5 129 27-184 21-157 (173)
189 PLN02589 caffeoyl-CoA O-methyl 98.9 4.3E-08 9.4E-13 79.0 12.3 79 48-128 78-164 (247)
190 PF05971 Methyltransf_10: Prot 98.9 1.3E-08 2.8E-13 83.7 8.8 82 50-133 103-190 (299)
191 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 6.6E-08 1.4E-12 79.7 12.4 97 32-133 71-169 (283)
192 COG4076 Predicted RNA methylas 98.8 1.6E-08 3.4E-13 76.9 7.5 71 50-127 33-103 (252)
193 PF05724 TPMT: Thiopurine S-me 98.8 8.3E-08 1.8E-12 76.1 11.9 82 48-133 36-129 (218)
194 COG0286 HsdM Type I restrictio 98.8 1.7E-08 3.8E-13 89.1 8.9 106 21-132 162-276 (489)
195 PRK00050 16S rRNA m(4)C1402 me 98.8 2E-08 4.3E-13 82.8 8.5 79 46-128 16-98 (296)
196 PRK13256 thiopurine S-methyltr 98.8 9.7E-08 2.1E-12 75.9 12.1 100 49-151 43-158 (226)
197 PF03291 Pox_MCEL: mRNA cappin 98.8 3E-08 6.5E-13 83.3 9.7 100 32-133 44-158 (331)
198 KOG3010|consensus 98.8 1.4E-08 3E-13 80.0 6.3 95 52-151 36-131 (261)
199 COG0421 SpeE Spermidine syntha 98.7 2E-07 4.3E-12 76.5 12.3 78 49-129 76-158 (282)
200 PF02527 GidB: rRNA small subu 98.7 4.6E-07 1E-11 69.9 13.5 102 19-126 16-121 (184)
201 KOG1975|consensus 98.7 4.9E-08 1.1E-12 79.9 8.4 95 32-133 105-209 (389)
202 KOG2915|consensus 98.7 6E-07 1.3E-11 72.0 14.2 125 40-171 96-223 (314)
203 COG0357 GidB Predicted S-adeno 98.7 3.2E-07 6.8E-12 72.2 11.7 112 5-126 26-141 (215)
204 COG4976 Predicted methyltransf 98.7 8E-09 1.7E-13 80.8 2.1 101 50-184 126-226 (287)
205 PF01564 Spermine_synth: Sperm 98.7 4E-07 8.8E-12 73.6 11.8 94 33-130 62-160 (246)
206 KOG2899|consensus 98.7 2.2E-07 4.8E-12 73.4 9.6 50 46-95 55-105 (288)
207 KOG2361|consensus 98.6 2.1E-07 4.6E-12 73.4 9.0 74 52-126 74-150 (264)
208 TIGR00478 tly hemolysin TlyA f 98.6 3.5E-07 7.5E-12 72.9 10.3 41 47-87 73-113 (228)
209 PRK00536 speE spermidine synth 98.6 9.7E-07 2.1E-11 71.7 12.7 112 33-159 58-173 (262)
210 PRK01544 bifunctional N5-gluta 98.6 4E-07 8.6E-12 80.9 10.0 104 49-154 347-460 (506)
211 PF04816 DUF633: Family of unk 98.6 1.3E-06 2.9E-11 68.5 11.8 119 53-184 1-123 (205)
212 PF04445 SAM_MT: Putative SAM- 98.5 2E-06 4.3E-11 68.4 12.1 120 51-186 77-209 (234)
213 COG1568 Predicted methyltransf 98.5 4.5E-07 9.8E-12 72.9 8.4 165 9-182 113-285 (354)
214 KOG1663|consensus 98.5 2E-06 4.4E-11 67.5 11.6 96 48-150 72-174 (237)
215 COG3129 Predicted SAM-dependen 98.4 1E-06 2.2E-11 69.2 8.0 104 28-133 55-166 (292)
216 COG3897 Predicted methyltransf 98.4 9.7E-07 2.1E-11 67.6 7.2 76 47-130 77-152 (218)
217 PF00891 Methyltransf_2: O-met 98.4 6E-06 1.3E-10 66.4 11.8 100 46-183 97-199 (241)
218 TIGR01444 fkbM_fam methyltrans 98.4 1.5E-06 3.2E-11 64.1 7.3 56 52-107 1-57 (143)
219 PF11599 AviRa: RRNA methyltra 98.4 5.6E-06 1.2E-10 64.4 10.4 131 31-181 33-212 (246)
220 KOG1661|consensus 98.4 7.9E-06 1.7E-10 63.4 11.0 92 31-128 66-170 (237)
221 COG1189 Predicted rRNA methyla 98.3 5.4E-06 1.2E-10 65.6 10.0 81 47-133 77-157 (245)
222 PF05219 DREV: DREV methyltran 98.3 7.9E-06 1.7E-10 65.6 10.7 107 49-195 94-200 (265)
223 COG4262 Predicted spermidine s 98.3 4E-06 8.6E-11 70.1 9.1 133 26-184 266-408 (508)
224 PF01739 CheR: CheR methyltran 98.3 3.7E-06 8.1E-11 65.6 8.2 108 49-185 31-177 (196)
225 PRK10611 chemotaxis methyltran 98.3 3.1E-05 6.6E-10 63.9 13.7 109 50-185 116-264 (287)
226 PF05891 Methyltransf_PK: AdoM 98.3 4.6E-06 9.9E-11 65.4 8.4 114 49-190 55-168 (218)
227 KOG1122|consensus 98.3 7.6E-06 1.7E-10 69.5 10.2 85 46-132 238-324 (460)
228 PF08123 DOT1: Histone methyla 98.3 2.6E-06 5.7E-11 66.8 7.0 85 43-129 36-131 (205)
229 COG1352 CheR Methylase of chem 98.2 3.4E-05 7.4E-10 62.9 12.8 107 50-184 97-242 (268)
230 COG0293 FtsJ 23S rRNA methylas 98.2 5.1E-05 1.1E-09 59.2 12.5 83 37-130 33-121 (205)
231 PF06080 DUF938: Protein of un 98.2 2.1E-05 4.4E-10 61.3 10.3 125 37-186 14-144 (204)
232 PF13679 Methyltransf_32: Meth 98.2 1.9E-05 4E-10 58.4 9.6 74 48-126 24-105 (141)
233 PF01728 FtsJ: FtsJ-like methy 98.2 1.1E-05 2.3E-10 62.1 8.3 72 49-133 23-104 (181)
234 COG2384 Predicted SAM-dependen 98.1 6.6E-05 1.4E-09 58.8 12.1 76 49-128 16-93 (226)
235 PLN02232 ubiquinone biosynthes 98.1 1.3E-05 2.8E-10 60.6 7.4 74 76-153 1-78 (160)
236 TIGR00006 S-adenosyl-methyltra 98.1 1.9E-05 4.2E-10 65.4 9.0 79 46-127 17-99 (305)
237 PF12147 Methyltransf_20: Puta 98.1 0.00015 3.3E-09 59.2 12.9 107 49-157 135-251 (311)
238 PRK11524 putative methyltransf 98.0 1.7E-05 3.7E-10 65.5 7.5 57 32-94 196-252 (284)
239 PF09243 Rsm22: Mitochondrial 98.0 9.4E-05 2E-09 60.8 11.8 142 36-181 20-165 (274)
240 PF01555 N6_N4_Mtase: DNA meth 98.0 1.8E-05 3.9E-10 62.5 7.4 55 30-90 177-231 (231)
241 PF05148 Methyltransf_8: Hypot 98.0 3.6E-05 7.8E-10 60.0 8.7 74 34-131 60-133 (219)
242 TIGR00497 hsdM type I restrict 98.0 3E-05 6.6E-10 69.0 9.0 107 23-133 193-306 (501)
243 cd00315 Cyt_C5_DNA_methylase C 98.0 2.5E-05 5.4E-10 64.2 7.1 74 52-133 2-75 (275)
244 PRK13699 putative methylase; P 97.9 6.1E-05 1.3E-09 60.2 7.9 59 31-95 150-208 (227)
245 PHA01634 hypothetical protein 97.9 9.2E-05 2E-09 53.0 7.7 74 48-128 27-100 (156)
246 PRK11760 putative 23S rRNA C24 97.9 0.00016 3.4E-09 60.6 10.3 70 48-129 210-279 (357)
247 PF03059 NAS: Nicotianamine sy 97.9 0.00085 1.9E-08 54.9 14.2 145 15-189 84-236 (276)
248 PF07942 N2227: N2227-like pro 97.8 0.00065 1.4E-08 55.4 13.0 38 48-86 55-92 (270)
249 KOG3045|consensus 97.8 0.00012 2.6E-09 58.7 8.1 60 49-131 180-239 (325)
250 KOG2940|consensus 97.7 0.00013 2.8E-09 57.6 6.4 79 49-133 72-150 (325)
251 PF01269 Fibrillarin: Fibrilla 97.7 0.002 4.3E-08 50.9 12.7 80 46-129 70-152 (229)
252 KOG1709|consensus 97.6 0.00089 1.9E-08 52.4 10.5 94 24-127 83-176 (271)
253 TIGR03439 methyl_EasF probable 97.6 0.0033 7.1E-08 52.8 14.4 97 49-147 76-184 (319)
254 KOG3201|consensus 97.6 4.2E-05 9.2E-10 57.0 2.7 141 24-170 8-156 (201)
255 KOG2198|consensus 97.6 0.00067 1.5E-08 57.1 9.8 98 34-133 139-249 (375)
256 KOG1501|consensus 97.6 0.00013 2.7E-09 62.6 5.5 56 52-107 69-125 (636)
257 PF01795 Methyltransf_5: MraW 97.6 0.00017 3.7E-09 59.9 6.0 78 47-127 18-100 (310)
258 PF07091 FmrO: Ribosomal RNA m 97.5 0.00057 1.2E-08 54.8 8.3 71 50-126 106-177 (251)
259 PF02005 TRM: N2,N2-dimethylgu 97.5 0.00068 1.5E-08 58.2 9.1 93 50-151 50-146 (377)
260 PF00145 DNA_methylase: C-5 cy 97.5 0.00027 5.9E-09 59.0 6.0 73 52-133 2-74 (335)
261 PF13578 Methyltransf_24: Meth 97.4 7.7E-05 1.7E-09 52.1 2.1 73 54-129 1-78 (106)
262 COG1867 TRM1 N2,N2-dimethylgua 97.4 0.001 2.2E-08 56.1 8.6 93 50-151 53-146 (380)
263 COG0275 Predicted S-adenosylme 97.3 0.0019 4.1E-08 53.1 8.3 83 42-127 16-103 (314)
264 KOG4589|consensus 97.1 0.0053 1.1E-07 47.2 9.1 70 48-130 68-146 (232)
265 COG0270 Dcm Site-specific DNA 97.1 0.002 4.2E-08 54.4 7.2 77 50-133 3-80 (328)
266 PRK10458 DNA cytosine methylas 97.1 0.0041 8.8E-08 54.8 9.2 80 50-133 88-182 (467)
267 COG1889 NOP1 Fibrillarin-like 97.0 0.023 4.9E-07 44.3 11.8 93 33-129 57-154 (231)
268 KOG3987|consensus 97.0 0.00015 3.2E-09 56.4 -0.2 97 50-185 113-209 (288)
269 COG0500 SmtA SAM-dependent met 97.0 0.023 5E-07 40.7 11.4 74 53-130 52-129 (257)
270 KOG2912|consensus 97.0 0.00088 1.9E-08 55.3 4.0 80 54-133 107-191 (419)
271 TIGR00675 dcm DNA-methyltransf 97.0 0.0016 3.4E-08 54.7 5.6 72 53-133 1-72 (315)
272 KOG1227|consensus 96.9 0.00044 9.5E-09 56.6 1.9 73 49-126 194-268 (351)
273 KOG1269|consensus 96.9 0.0028 6.1E-08 54.0 6.9 75 48-126 109-184 (364)
274 PF03141 Methyltransf_29: Puta 96.8 0.0022 4.9E-08 56.1 5.2 110 32-151 100-214 (506)
275 KOG3178|consensus 96.8 0.031 6.8E-07 46.9 11.6 98 51-184 179-276 (342)
276 KOG2078|consensus 96.8 0.001 2.2E-08 56.9 2.8 62 49-113 249-312 (495)
277 PF06962 rRNA_methylase: Putat 96.7 0.0037 8E-08 45.9 4.9 56 74-131 1-57 (140)
278 KOG4058|consensus 96.6 0.008 1.7E-07 44.4 5.9 65 48-114 71-136 (199)
279 KOG0822|consensus 96.6 0.0046 1E-07 54.4 5.4 132 10-151 331-470 (649)
280 KOG2798|consensus 96.4 0.039 8.5E-07 45.7 9.7 52 33-85 134-185 (369)
281 PRK11524 putative methyltransf 96.4 0.0074 1.6E-07 49.9 5.5 32 99-132 8-39 (284)
282 PF07757 AdoMet_MTase: Predict 96.3 0.0081 1.8E-07 41.9 4.4 48 33-81 42-89 (112)
283 KOG0821|consensus 96.2 0.015 3.3E-07 45.9 6.1 104 24-133 29-142 (326)
284 PF04989 CmcI: Cephalosporin h 96.2 0.045 9.7E-07 42.9 8.8 61 49-111 32-98 (206)
285 KOG2793|consensus 96.2 0.17 3.6E-06 40.9 12.2 43 49-92 86-128 (248)
286 KOG2352|consensus 96.1 0.11 2.4E-06 45.5 11.3 77 52-133 51-127 (482)
287 KOG1331|consensus 96.0 0.0057 1.2E-07 49.9 2.9 93 49-155 45-144 (293)
288 KOG3115|consensus 95.8 0.079 1.7E-06 41.4 8.1 63 50-114 61-131 (249)
289 COG0863 DNA modification methy 95.7 0.05 1.1E-06 44.9 7.5 48 48-96 221-268 (302)
290 PF04672 Methyltransf_19: S-ad 95.5 0.0085 1.8E-07 48.7 2.2 57 51-107 70-130 (267)
291 KOG1201|consensus 95.5 0.087 1.9E-06 43.5 7.8 81 46-129 34-123 (300)
292 KOG1562|consensus 95.4 0.06 1.3E-06 44.4 6.7 81 47-129 119-204 (337)
293 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.3 0.13 2.7E-06 41.9 8.3 114 47-184 54-200 (256)
294 KOG2360|consensus 95.3 0.047 1E-06 46.4 5.8 86 46-133 210-297 (413)
295 PRK13699 putative methylase; P 95.2 0.022 4.8E-07 45.5 3.7 31 100-132 2-32 (227)
296 KOG1253|consensus 95.2 0.017 3.8E-07 50.5 3.0 96 48-151 108-208 (525)
297 KOG2920|consensus 95.1 0.018 3.9E-07 47.0 2.9 39 48-86 115-153 (282)
298 COG1748 LYS9 Saccharopine dehy 95.1 0.34 7.4E-06 41.8 10.6 126 51-190 2-130 (389)
299 PF11968 DUF3321: Putative met 94.6 0.24 5.2E-06 39.1 7.8 61 51-130 53-114 (219)
300 COG1565 Uncharacterized conser 94.6 0.14 3.1E-06 43.4 6.9 47 49-95 77-132 (370)
301 PF10237 N6-adenineMlase: Prob 94.5 0.41 8.8E-06 36.2 8.7 95 25-131 3-97 (162)
302 PF02086 MethyltransfD12: D12 94.2 0.089 1.9E-06 42.5 4.9 40 49-89 20-59 (260)
303 PF07669 Eco57I: Eco57I restri 94.1 0.17 3.7E-06 35.3 5.4 54 120-173 2-70 (106)
304 PTZ00357 methyltransferase; Pr 94.0 0.17 3.7E-06 46.5 6.6 116 12-131 640-805 (1072)
305 KOG2651|consensus 93.8 0.28 6.1E-06 41.9 7.1 57 35-91 139-195 (476)
306 COG4798 Predicted methyltransf 93.4 0.63 1.4E-05 36.3 7.9 114 46-184 45-167 (238)
307 KOG1099|consensus 93.0 0.26 5.6E-06 39.3 5.3 68 51-131 43-126 (294)
308 KOG1596|consensus 92.9 0.67 1.5E-05 37.3 7.5 94 33-130 137-236 (317)
309 PF02636 Methyltransf_28: Puta 92.8 0.23 5E-06 40.2 5.1 61 34-94 3-72 (252)
310 KOG0024|consensus 92.5 0.29 6.4E-06 40.9 5.3 45 46-90 166-212 (354)
311 PF02254 TrkA_N: TrkA-N domain 92.5 0.78 1.7E-05 32.0 7.0 65 58-129 4-71 (116)
312 COG1064 AdhP Zn-dependent alco 92.5 1.6 3.4E-05 37.1 9.7 74 46-129 163-238 (339)
313 COG5459 Predicted rRNA methyla 92.4 0.76 1.6E-05 39.1 7.5 126 46-174 110-245 (484)
314 PF05050 Methyltransf_21: Meth 91.6 0.75 1.6E-05 34.0 6.3 53 55-107 1-61 (167)
315 PF04378 RsmJ: Ribosomal RNA s 91.4 0.57 1.2E-05 37.8 5.7 102 54-160 62-168 (245)
316 PF10354 DUF2431: Domain of un 91.0 4.9 0.00011 30.4 10.2 120 56-188 3-130 (166)
317 PRK12548 shikimate 5-dehydroge 90.7 8.3 0.00018 31.9 12.2 121 48-171 124-251 (289)
318 KOG3924|consensus 90.2 0.67 1.5E-05 39.8 5.3 95 31-128 175-280 (419)
319 PRK05867 short chain dehydroge 90.0 1.9 4.2E-05 34.3 7.8 82 48-131 7-97 (253)
320 COG2961 ComJ Protein involved 90.0 3.1 6.8E-05 33.7 8.6 112 54-170 93-209 (279)
321 PRK07904 short chain dehydroge 90.0 1.8 3.9E-05 34.7 7.6 82 49-131 7-98 (253)
322 PRK01747 mnmC bifunctional tRN 89.7 1.5 3.3E-05 40.6 7.7 77 49-128 57-174 (662)
323 PRK08339 short chain dehydroge 89.6 2.8 6E-05 33.8 8.5 81 48-130 6-95 (263)
324 PF07279 DUF1442: Protein of u 89.3 2.3 5.1E-05 33.5 7.3 89 32-128 28-123 (218)
325 PRK08644 thiamine biosynthesis 89.0 2.2 4.7E-05 33.7 7.1 77 49-127 27-124 (212)
326 PRK05876 short chain dehydroge 88.9 2.4 5.3E-05 34.5 7.7 82 48-131 4-94 (275)
327 COG1086 Predicted nucleoside-d 88.7 2.1 4.6E-05 38.6 7.4 84 48-132 248-337 (588)
328 PRK05866 short chain dehydroge 88.3 3.4 7.4E-05 34.0 8.2 80 49-131 39-128 (293)
329 PRK07097 gluconate 5-dehydroge 88.0 8.3 0.00018 30.9 10.3 81 49-131 9-98 (265)
330 PRK06139 short chain dehydroge 88.0 3.5 7.5E-05 34.8 8.2 82 48-131 5-95 (330)
331 PRK06194 hypothetical protein; 87.8 2.8 6E-05 34.1 7.4 81 49-132 5-95 (287)
332 PRK07063 short chain dehydroge 87.4 4 8.7E-05 32.6 8.0 81 48-130 5-96 (260)
333 COG1743 Adenine-specific DNA m 87.1 0.89 1.9E-05 42.3 4.3 44 48-92 89-132 (875)
334 PRK05854 short chain dehydroge 86.9 7 0.00015 32.5 9.4 82 48-130 12-103 (313)
335 PRK09291 short chain dehydroge 86.7 5.2 0.00011 31.8 8.3 78 51-131 3-84 (257)
336 PF00106 adh_short: short chai 86.7 4.5 9.8E-05 29.7 7.5 81 52-133 2-93 (167)
337 PRK12826 3-ketoacyl-(acyl-carr 86.6 4.7 0.0001 31.7 7.9 81 49-132 5-95 (251)
338 COG1063 Tdh Threonine dehydrog 86.5 1.6 3.4E-05 37.2 5.3 44 49-92 168-213 (350)
339 PLN02819 lysine-ketoglutarate 86.3 5.8 0.00013 38.8 9.4 125 49-189 568-709 (1042)
340 PF03686 UPF0146: Uncharacteri 86.0 11 0.00023 27.3 8.6 63 49-126 13-76 (127)
341 PRK07478 short chain dehydroge 86.0 5.5 0.00012 31.6 8.1 80 49-130 5-93 (254)
342 COG1062 AdhC Zn-dependent alco 85.9 2.6 5.7E-05 35.7 6.1 46 46-91 182-229 (366)
343 TIGR03206 benzo_BadH 2-hydroxy 85.4 6.5 0.00014 31.0 8.2 80 49-131 2-91 (250)
344 PRK03659 glutathione-regulated 85.3 4.8 0.0001 37.0 8.1 67 52-128 402-472 (601)
345 KOG0022|consensus 85.2 2.6 5.5E-05 35.4 5.6 45 47-91 190-236 (375)
346 PRK08643 acetoin reductase; Va 85.0 15 0.00033 29.1 10.2 79 50-131 2-90 (256)
347 KOG0725|consensus 84.9 10 0.00023 31.0 9.2 82 48-132 6-101 (270)
348 TIGR02356 adenyl_thiF thiazole 84.8 3.4 7.4E-05 32.3 6.1 33 49-81 20-54 (202)
349 PRK12475 thiamine/molybdopteri 84.7 4 8.6E-05 34.7 6.9 77 49-127 23-123 (338)
350 PRK08277 D-mannonate oxidoredu 84.6 6.8 0.00015 31.6 8.1 80 49-130 9-97 (278)
351 PRK08945 putative oxoacyl-(acy 83.9 8.4 0.00018 30.4 8.2 81 48-130 10-102 (247)
352 PRK07102 short chain dehydroge 83.8 7 0.00015 30.8 7.7 78 51-130 2-86 (243)
353 PRK09072 short chain dehydroge 83.8 17 0.00037 29.0 10.1 80 49-131 4-91 (263)
354 PF01555 N6_N4_Mtase: DNA meth 83.6 0.9 2E-05 35.4 2.4 13 121-133 1-13 (231)
355 COG1255 Uncharacterized protei 83.5 6.5 0.00014 27.9 6.3 61 52-127 16-77 (129)
356 PRK13394 3-hydroxybutyrate deh 83.3 7.6 0.00017 30.8 7.8 80 49-131 6-95 (262)
357 PRK06197 short chain dehydroge 83.2 9 0.00019 31.6 8.4 81 48-130 14-105 (306)
358 PF01488 Shikimate_DH: Shikima 83.1 6.5 0.00014 28.4 6.6 77 46-131 8-86 (135)
359 PRK03562 glutathione-regulated 82.7 8.9 0.00019 35.4 8.8 69 51-127 401-471 (621)
360 PRK06935 2-deoxy-D-gluconate 3 82.4 19 0.00041 28.6 9.8 81 48-131 13-102 (258)
361 PF11899 DUF3419: Protein of u 82.4 4.6 0.0001 34.9 6.4 45 48-93 34-78 (380)
362 PRK07688 thiamine/molybdopteri 82.3 5.7 0.00012 33.8 6.8 77 49-127 23-123 (339)
363 PRK08340 glucose-1-dehydrogena 82.1 6.9 0.00015 31.3 7.1 76 52-130 2-86 (259)
364 PRK06949 short chain dehydroge 81.8 8.6 0.00019 30.5 7.6 80 48-130 7-96 (258)
365 PRK07831 short chain dehydroge 81.8 11 0.00025 30.0 8.3 82 49-131 16-108 (262)
366 cd00757 ThiF_MoeB_HesA_family 81.7 4.8 0.0001 32.0 5.9 78 49-128 20-119 (228)
367 PRK07576 short chain dehydroge 81.6 8.6 0.00019 30.9 7.5 76 49-129 8-95 (264)
368 PRK12481 2-deoxy-D-gluconate 3 81.5 8.9 0.00019 30.5 7.5 80 48-131 6-94 (251)
369 PRK05650 short chain dehydroge 81.4 9.4 0.0002 30.7 7.7 75 52-131 2-88 (270)
370 PRK07792 fabG 3-ketoacyl-(acyl 81.3 9.8 0.00021 31.5 7.9 82 48-131 10-100 (306)
371 KOG1205|consensus 81.3 8.5 0.00018 31.8 7.3 84 49-133 11-104 (282)
372 PLN02253 xanthoxin dehydrogena 81.2 9.5 0.00021 30.8 7.7 78 49-130 17-104 (280)
373 PRK00258 aroE shikimate 5-dehy 81.2 27 0.00059 28.6 10.4 115 47-171 120-236 (278)
374 cd01487 E1_ThiF_like E1_ThiF_l 81.1 9.3 0.0002 29.0 7.1 31 52-82 1-33 (174)
375 PRK07666 fabG 3-ketoacyl-(acyl 81.0 13 0.00029 29.1 8.3 78 49-131 6-95 (239)
376 PRK09496 trkA potassium transp 80.9 7.5 0.00016 34.0 7.4 73 49-129 230-306 (453)
377 PRK10669 putative cation:proto 80.9 8.9 0.00019 34.8 8.0 66 52-127 419-488 (558)
378 PRK06138 short chain dehydroge 80.8 23 0.0005 27.8 9.7 79 49-131 4-92 (252)
379 PRK06172 short chain dehydroge 80.7 13 0.00029 29.4 8.3 79 49-130 6-94 (253)
380 KOG2782|consensus 80.4 1.3 2.7E-05 35.2 2.1 94 38-133 32-131 (303)
381 PRK06124 gluconate 5-dehydroge 80.3 14 0.00031 29.2 8.3 81 48-131 9-99 (256)
382 COG0569 TrkA K+ transport syst 80.2 7.7 0.00017 30.9 6.6 69 52-126 2-72 (225)
383 PRK07791 short chain dehydroge 80.1 16 0.00035 29.8 8.7 82 48-131 4-103 (286)
384 PRK05872 short chain dehydroge 80.1 11 0.00024 31.0 7.8 81 48-131 7-96 (296)
385 PLN03209 translocon at the inn 79.9 12 0.00025 34.3 8.2 80 48-130 78-169 (576)
386 PRK07453 protochlorophyllide o 79.9 9.2 0.0002 31.8 7.3 79 49-130 5-93 (322)
387 PRK12429 3-hydroxybutyrate deh 79.5 17 0.00037 28.6 8.6 80 49-131 3-92 (258)
388 PRK08226 short chain dehydroge 79.2 26 0.00056 27.9 9.6 80 48-131 4-93 (263)
389 PRK06196 oxidoreductase; Provi 79.2 12 0.00025 31.1 7.7 74 49-131 25-110 (315)
390 PRK07035 short chain dehydroge 79.0 17 0.00036 28.8 8.3 81 48-130 6-95 (252)
391 COG3510 CmcI Cephalosporin hyd 78.7 4.5 9.7E-05 31.6 4.5 54 49-107 69-127 (237)
392 cd08283 FDH_like_1 Glutathione 78.7 5.6 0.00012 34.1 5.8 46 46-91 181-228 (386)
393 TIGR00571 dam DNA adenine meth 78.4 4.5 9.8E-05 33.0 4.9 30 99-132 155-184 (266)
394 PF02719 Polysacc_synt_2: Poly 78.2 5.1 0.00011 33.3 5.1 77 57-133 4-90 (293)
395 PRK08278 short chain dehydroge 78.2 25 0.00053 28.4 9.2 81 49-132 5-102 (273)
396 KOG1098|consensus 78.2 4 8.8E-05 37.3 4.7 71 48-129 43-119 (780)
397 PRK08862 short chain dehydroge 77.8 16 0.00036 28.7 7.9 78 49-128 4-91 (227)
398 PRK06701 short chain dehydroge 77.7 12 0.00026 30.7 7.3 81 48-130 44-134 (290)
399 PRK08267 short chain dehydroge 77.7 33 0.00072 27.2 10.4 76 51-131 2-88 (260)
400 PRK07677 short chain dehydroge 77.4 18 0.0004 28.6 8.2 78 50-129 1-87 (252)
401 COG0338 Dam Site-specific DNA 77.2 4.7 0.0001 33.2 4.6 31 99-133 156-187 (274)
402 TIGR01381 E1_like_apg7 E1-like 77.2 5.1 0.00011 37.0 5.2 60 22-81 300-371 (664)
403 PRK13656 trans-2-enoyl-CoA red 77.2 34 0.00075 29.8 9.9 95 35-133 25-144 (398)
404 PLN02427 UDP-apiose/xylose syn 77.1 6.6 0.00014 33.6 5.8 78 48-128 12-94 (386)
405 COG0300 DltE Short-chain dehyd 76.9 23 0.00049 29.1 8.4 84 48-133 4-97 (265)
406 cd01065 NAD_bind_Shikimate_DH 76.7 26 0.00056 25.4 9.0 73 48-132 17-93 (155)
407 PRK07326 short chain dehydroge 76.7 17 0.00037 28.3 7.7 77 49-129 5-91 (237)
408 PRK08628 short chain dehydroge 76.6 14 0.00031 29.2 7.3 79 48-130 5-93 (258)
409 PRK07109 short chain dehydroge 76.6 21 0.00047 29.9 8.6 81 48-131 6-96 (334)
410 TIGR03325 BphB_TodD cis-2,3-di 76.6 13 0.00028 29.7 7.1 74 49-129 4-88 (262)
411 TIGR00027 mthyl_TIGR00027 meth 76.6 20 0.00044 29.2 8.2 58 50-108 82-142 (260)
412 PRK10310 PTS system galactitol 76.5 8.1 0.00017 26.2 5.0 55 56-131 7-61 (94)
413 PRK14851 hypothetical protein; 76.5 27 0.00058 32.7 9.8 78 49-128 42-141 (679)
414 PF05206 TRM13: Methyltransfer 76.4 8.8 0.00019 31.3 6.0 35 48-82 17-57 (259)
415 cd01488 Uba3_RUB Ubiquitin act 75.9 14 0.00031 30.7 7.2 73 52-127 1-95 (291)
416 PF03721 UDPG_MGDP_dh_N: UDP-g 75.7 6.4 0.00014 30.3 4.8 88 52-148 2-105 (185)
417 PRK08589 short chain dehydroge 75.6 25 0.00053 28.4 8.5 81 48-131 4-93 (272)
418 PRK07890 short chain dehydroge 75.5 24 0.00052 27.9 8.4 80 49-130 4-92 (258)
419 KOG3350|consensus 75.4 35 0.00077 26.3 12.3 96 24-133 50-148 (217)
420 PRK05855 short chain dehydroge 75.4 26 0.00057 31.3 9.4 80 49-131 314-403 (582)
421 PRK07774 short chain dehydroge 75.2 34 0.00073 26.8 9.1 78 49-131 5-94 (250)
422 PRK07523 gluconate 5-dehydroge 75.1 24 0.00053 27.9 8.3 81 48-131 8-98 (255)
423 PRK09424 pntA NAD(P) transhydr 75.1 8.2 0.00018 34.7 5.9 42 48-90 163-206 (509)
424 COG3392 Adenine-specific DNA m 75.1 2.2 4.8E-05 34.8 2.1 33 48-81 26-58 (330)
425 PRK06182 short chain dehydroge 75.0 16 0.00035 29.3 7.3 75 49-132 2-86 (273)
426 COG0677 WecC UDP-N-acetyl-D-ma 75.0 50 0.0011 28.9 10.2 117 51-170 10-144 (436)
427 PRK06940 short chain dehydroge 74.9 16 0.00036 29.5 7.3 77 51-131 3-87 (275)
428 PRK14106 murD UDP-N-acetylmura 74.8 18 0.00039 31.7 8.0 73 49-131 4-79 (450)
429 KOG2352|consensus 74.5 1.7 3.6E-05 38.5 1.4 77 49-127 295-377 (482)
430 PRK08762 molybdopterin biosynt 74.4 12 0.00026 32.2 6.6 33 49-81 134-168 (376)
431 cd00401 AdoHcyase S-adenosyl-L 74.4 10 0.00023 33.1 6.2 60 27-90 182-243 (413)
432 PRK08328 hypothetical protein; 73.9 16 0.00035 29.1 6.8 33 49-81 26-60 (231)
433 PRK05786 fabG 3-ketoacyl-(acyl 73.9 26 0.00055 27.3 8.1 77 49-129 4-90 (238)
434 PF12242 Eno-Rase_NADH_b: NAD( 73.9 20 0.00043 23.5 5.9 48 33-81 22-73 (78)
435 PRK07533 enoyl-(acyl carrier p 73.8 29 0.00062 27.7 8.4 80 48-130 8-98 (258)
436 PRK09880 L-idonate 5-dehydroge 73.7 15 0.00032 30.8 7.0 44 47-90 167-212 (343)
437 PRK06125 short chain dehydroge 73.6 31 0.00068 27.4 8.6 80 49-130 6-91 (259)
438 PRK07201 short chain dehydroge 73.5 20 0.00044 32.9 8.3 81 48-131 369-459 (657)
439 PRK07806 short chain dehydroge 73.4 27 0.00059 27.4 8.2 80 48-130 4-94 (248)
440 COG5379 BtaA S-adenosylmethion 73.4 11 0.00024 31.4 5.7 47 48-95 62-108 (414)
441 TIGR01963 PHB_DH 3-hydroxybuty 73.4 30 0.00065 27.2 8.4 77 51-130 2-88 (255)
442 PRK08217 fabG 3-ketoacyl-(acyl 73.3 28 0.00062 27.2 8.2 77 49-130 4-92 (253)
443 PRK05597 molybdopterin biosynt 73.3 15 0.00033 31.3 7.0 78 49-128 27-126 (355)
444 PF03435 Saccharop_dh: Sacchar 73.2 19 0.0004 30.9 7.6 122 53-189 1-128 (386)
445 PRK08213 gluconate 5-dehydroge 73.1 30 0.00064 27.5 8.3 79 49-130 11-99 (259)
446 PRK07062 short chain dehydroge 72.7 32 0.0007 27.4 8.5 81 48-131 6-98 (265)
447 PLN02989 cinnamyl-alcohol dehy 72.7 17 0.00037 30.0 7.1 78 49-130 4-87 (325)
448 PRK12939 short chain dehydroge 72.6 34 0.00073 26.8 8.5 80 48-130 5-94 (250)
449 PRK06113 7-alpha-hydroxysteroi 72.5 29 0.00064 27.4 8.2 81 49-131 10-99 (255)
450 PF03492 Methyltransf_7: SAM d 72.5 42 0.00091 28.5 9.3 81 49-133 16-120 (334)
451 PRK07074 short chain dehydroge 72.2 20 0.00044 28.4 7.2 76 50-130 2-87 (257)
452 PRK08993 2-deoxy-D-gluconate 3 72.2 18 0.00038 28.8 6.8 79 48-131 8-96 (253)
453 PLN02780 ketoreductase/ oxidor 71.9 24 0.00053 29.5 7.8 58 49-107 52-113 (320)
454 KOG0919|consensus 71.8 3.9 8.5E-05 33.0 2.7 78 50-133 3-82 (338)
455 PRK09242 tropinone reductase; 71.4 32 0.0007 27.2 8.2 81 49-131 8-99 (257)
456 PLN02668 indole-3-acetate carb 71.4 3 6.6E-05 36.0 2.2 81 50-134 64-176 (386)
457 PRK07814 short chain dehydroge 71.3 34 0.00075 27.3 8.4 77 49-130 9-97 (263)
458 PRK05993 short chain dehydroge 71.3 41 0.0009 27.1 8.9 74 50-132 4-88 (277)
459 PRK07454 short chain dehydroge 71.1 33 0.00072 26.8 8.1 78 49-131 5-94 (241)
460 cd08237 ribitol-5-phosphate_DH 71.0 9.7 0.00021 32.0 5.2 43 48-90 162-207 (341)
461 PRK08303 short chain dehydroge 70.4 29 0.00062 28.8 7.9 77 48-128 6-103 (305)
462 PRK06057 short chain dehydroge 70.3 21 0.00046 28.3 6.9 76 48-131 5-90 (255)
463 PRK06500 short chain dehydroge 69.8 27 0.00058 27.4 7.3 76 49-132 5-92 (249)
464 PRK07231 fabG 3-ketoacyl-(acyl 69.7 37 0.00079 26.6 8.1 78 49-130 4-91 (251)
465 PRK08085 gluconate 5-dehydroge 69.7 35 0.00077 26.9 8.1 80 49-130 8-96 (254)
466 PRK05600 thiamine biosynthesis 69.7 20 0.00043 30.9 6.8 33 49-81 40-74 (370)
467 PRK05565 fabG 3-ketoacyl-(acyl 69.6 34 0.00074 26.6 7.9 80 49-131 4-94 (247)
468 PRK08265 short chain dehydroge 69.0 30 0.00066 27.6 7.6 78 48-130 4-90 (261)
469 cd01484 E1-2_like Ubiquitin ac 69.0 28 0.0006 28.0 7.1 76 52-127 1-98 (234)
470 PRK03369 murD UDP-N-acetylmura 69.0 20 0.00042 32.1 6.9 70 48-131 10-81 (488)
471 PRK12743 oxidoreductase; Provi 69.0 31 0.00068 27.4 7.6 79 50-131 2-91 (256)
472 PRK08703 short chain dehydroge 68.6 41 0.00088 26.3 8.1 79 48-130 4-97 (239)
473 PRK06720 hypothetical protein; 68.6 48 0.001 24.9 8.3 80 49-132 15-105 (169)
474 cd01483 E1_enzyme_family Super 68.4 35 0.00075 24.6 7.1 30 52-81 1-32 (143)
475 COG4221 Short-chain alcohol de 68.3 42 0.0009 27.2 7.9 77 49-129 5-90 (246)
476 PF03141 Methyltransf_29: Puta 68.1 13 0.00028 33.2 5.4 48 24-71 336-387 (506)
477 PRK06914 short chain dehydroge 68.0 39 0.00085 27.1 8.1 79 50-130 3-91 (280)
478 PRK07825 short chain dehydroge 67.8 41 0.00088 26.9 8.1 76 49-131 4-89 (273)
479 PRK05690 molybdopterin biosynt 67.7 23 0.0005 28.5 6.5 33 49-81 31-65 (245)
480 PF12692 Methyltransf_17: S-ad 67.7 27 0.00058 26.1 6.1 44 37-81 17-61 (160)
481 PRK09135 pteridine reductase; 67.6 30 0.00066 27.0 7.2 80 49-130 5-95 (249)
482 PRK07024 short chain dehydroge 67.6 30 0.00065 27.5 7.2 76 51-130 3-88 (257)
483 cd05564 PTS_IIB_chitobiose_lic 67.4 8.8 0.00019 26.1 3.5 53 56-130 4-56 (96)
484 KOG2539|consensus 67.3 18 0.00039 32.1 6.0 128 46-174 197-334 (491)
485 PRK06200 2,3-dihydroxy-2,3-dih 67.3 32 0.00068 27.4 7.3 78 49-131 5-91 (263)
486 PLN02657 3,8-divinyl protochlo 67.1 18 0.0004 31.2 6.2 77 48-128 58-144 (390)
487 PRK05875 short chain dehydroge 67.0 32 0.00069 27.6 7.4 77 49-129 6-95 (276)
488 PRK08416 7-alpha-hydroxysteroi 66.8 51 0.0011 26.2 8.4 78 48-129 6-96 (260)
489 COG0338 Dam Site-specific DNA 66.7 4.9 0.00011 33.1 2.4 49 37-89 15-63 (274)
490 cd00755 YgdL_like Family of ac 66.3 29 0.00062 27.8 6.7 33 49-81 10-44 (231)
491 COG0771 MurD UDP-N-acetylmuram 65.8 19 0.00042 31.9 6.0 75 49-133 6-82 (448)
492 PRK08223 hypothetical protein; 65.7 31 0.00067 28.7 6.9 33 49-81 26-60 (287)
493 PRK06505 enoyl-(acyl carrier p 65.2 47 0.001 26.8 8.0 79 49-130 6-95 (271)
494 PRK06079 enoyl-(acyl carrier p 65.2 43 0.00094 26.6 7.7 79 48-131 5-94 (252)
495 PRK08415 enoyl-(acyl carrier p 65.0 47 0.001 26.9 8.0 79 49-130 4-93 (274)
496 PLN02662 cinnamyl-alcohol dehy 64.5 32 0.0007 28.2 7.1 78 49-130 3-86 (322)
497 PF04072 LCM: Leucine carboxyl 64.2 17 0.00036 27.8 4.9 57 51-108 80-140 (183)
498 TIGR02632 RhaD_aldol-ADH rhamn 64.2 34 0.00074 32.0 7.7 82 48-131 412-504 (676)
499 PRK06128 oxidoreductase; Provi 63.9 40 0.00086 27.6 7.4 81 48-131 53-145 (300)
500 PRK01438 murD UDP-N-acetylmura 63.9 62 0.0014 28.6 9.1 71 49-130 15-88 (480)
No 1
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-33 Score=209.46 Aligned_cols=197 Identities=40% Similarity=0.640 Sum_probs=179.0
Q ss_pred HHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChH
Q psy17460 4 KHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKE 83 (216)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~ 83 (216)
+.++..++++ ..|++|+..++||.||..++..+++.+... .+..|+.|+|+|||||.+++.++..|+..|+|+|+|++
T Consensus 2 k~Le~~l~kl-~~f~~p~~~LEQY~Tp~~~Aa~il~~a~~~-g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~ 79 (198)
T COG2263 2 KELEILLEKL-KGFPNPKLGLEQYRTPAPLAAYILWVAYLR-GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE 79 (198)
T ss_pred chhhhhhhhh-cCCCCCCccceecCCChHHHHHHHHHHHHc-CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH
Confidence 5678889999 999999999999999999999999988743 67889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHH
Q psy17460 84 ILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRES 163 (216)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~ 163 (216)
+++.++.|.....- +++++.+|+ .++. ..+|.+++||||+...+++|..|+.++++....+|+++...+.+.
T Consensus 80 a~ei~r~N~~~l~g-~v~f~~~dv--~~~~-----~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f 151 (198)
T COG2263 80 ALEIARANAEELLG-DVEFVVADV--SDFR-----GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDF 151 (198)
T ss_pred HHHHHHHHHHhhCC-ceEEEEcch--hhcC-----CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHH
Confidence 99999999988443 799999999 6665 689999999999999888999999999999999999999999999
Q ss_pred HHHHHHHhcCccceeeeeeeecCCCccccccccccceEEEEEEEEeecc
Q psy17460 164 ILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITSD 212 (216)
Q Consensus 164 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 212 (216)
+.+.+... +. ..+..++..+..+..|.||+++...+.++++|+.|.|
T Consensus 152 ~~~~~~~~-G~-~v~~~~~~~~~iP~~y~fH~k~~~~I~v~i~r~~k~~ 198 (198)
T COG2263 152 VEKFAADL-GG-TVTHIERARFPIPRTYPFHRKRVRRIEVDIFRFEKGG 198 (198)
T ss_pred HHHHHHhc-CC-eEEEEEEEEEecCccCchhhheeeeeeEEEEEEEecC
Confidence 98888876 43 4566678889999999999999999999999999875
No 2
>KOG3420|consensus
Probab=99.98 E-value=3.9e-32 Score=195.29 Aligned_cols=185 Identities=45% Similarity=0.732 Sum_probs=170.4
Q ss_pred CchHHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeC
Q psy17460 1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALEC 80 (216)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~ 80 (216)
|..|.++..++++ ++|..|+..++||+|+.+++..|+..+-...+++.|++++|+|||.|-+++.++..++..|+|+||
T Consensus 1 m~~Kel~~~L~~v-~gFeKpk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDI 79 (185)
T KOG3420|consen 1 MRLKELESRLQQV-DGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDI 79 (185)
T ss_pred CchHHHHHHHHHh-ccccccchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeec
Confidence 6789999999999 999999999999999999999999999998889999999999999999998888877889999999
Q ss_pred ChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcc
Q psy17460 81 DKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTST 160 (216)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~ 160 (216)
+|++++.+.+|+....+ +++++++|+ .+..+.. +.||.++.||||+...+++|.++++.+++..+.+|+++..++
T Consensus 80 dpeALEIf~rNaeEfEv-qidlLqcdi--ldle~~~--g~fDtaviNppFGTk~~~aDm~fv~~al~~~~~VySLHKtST 154 (185)
T KOG3420|consen 80 DPEALEIFTRNAEEFEV-QIDLLQCDI--LDLELKG--GIFDTAVINPPFGTKKKGADMEFVSAALKVASAVYSLHKTST 154 (185)
T ss_pred CHHHHHHHhhchHHhhh-hhheeeeec--cchhccC--CeEeeEEecCCCCcccccccHHHHHHHHHHHHHHHHHhcccH
Confidence 99999999999999888 889999999 7766544 789999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHhcCccceeeeeeeecCCCccccccccccceEEEEEEEEeec
Q psy17460 161 RESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLRIITS 211 (216)
Q Consensus 161 ~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 211 (216)
++.+++ .+..+.||+++..++.|++||+.++
T Consensus 155 Rey~~k--------------------LP~~ykFHK~k~vdiaVDlirfe~r 185 (185)
T KOG3420|consen 155 REYRYK--------------------LPKLYKFHKRKEVDIAVDLIRFEPR 185 (185)
T ss_pred HHHHHh--------------------cchhhhhhhccccceeeeEEEeecC
Confidence 888764 4566789999999999999999864
No 3
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.79 E-value=1.2e-18 Score=134.37 Aligned_cols=154 Identities=18% Similarity=0.298 Sum_probs=113.0
Q ss_pred CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEE
Q psy17460 24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDA 102 (216)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~ 102 (216)
....||+..+++.+.+.+... ..+|.++||++||||.++++++.+|+.+|+.||.|+.++..+++|++..+.. ++++
T Consensus 19 ~~~RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v 96 (183)
T PF03602_consen 19 DNTRPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRV 96 (183)
T ss_dssp -TS-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEE
T ss_pred CCcCCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceee
Confidence 567899999999999999864 1479999999999999999999999999999999999999999999999887 4999
Q ss_pred EEeccccccccccc--ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHH--HHhcCcccee
Q psy17460 103 ILFEINEKSLDSSV--FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKI--QAFKNVEQVD 178 (216)
Q Consensus 103 ~~~d~~~~~~~~~~--~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~--~~~l~~~~g~ 178 (216)
+.+|+ ....... ...+||+||+||||.... ++.. ++... ..||++ +|.
T Consensus 97 ~~~d~--~~~l~~~~~~~~~fDiIflDPPY~~~~------~~~~-------------------~l~~l~~~~~l~~-~~~ 148 (183)
T PF03602_consen 97 IKGDA--FKFLLKLAKKGEKFDIIFLDPPYAKGL------YYEE-------------------LLELLAENNLLNE-DGL 148 (183)
T ss_dssp EESSH--HHHHHHHHHCTS-EEEEEE--STTSCH------HHHH-------------------HHHHHHHTTSEEE-EEE
T ss_pred eccCH--HHHHHhhcccCCCceEEEECCCcccch------HHHH-------------------HHHHHHHCCCCCC-CEE
Confidence 99998 6554322 347999999999997540 0122 22222 478999 999
Q ss_pred eeeeeecC--C---Cccc-cccccccceEEEEEEE
Q psy17460 179 VIAEMKYD--L---NQSY-KFHKKSLHDIEVDLLR 207 (216)
Q Consensus 179 ~~~~~~~~--~---~~~~-~~~~~~~~~~~~~~~r 207 (216)
+++|+... . ...| ....++++++.+.+++
T Consensus 149 ii~E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~ 183 (183)
T PF03602_consen 149 IIIEHSKKEDLPESPGNWELIKERKYGDTKLSFYQ 183 (183)
T ss_dssp EEEEEETTSSS-SEETTEEEEEEEEETTEEEEEEE
T ss_pred EEEEecCCCCCccCCCCEEEEEEecCCCEEEEEEC
Confidence 99999744 1 2334 5566678888888775
No 4
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=133.20 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=109.6
Q ss_pred CCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
...+|||+|||+|.+++.++++. ..+++|||+++++.+.|++|++.+++. +++++++|+ .++.......+||+|+|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di--~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI--KEFLKALVFASFDLIIC 121 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH--HHhhhcccccccCEEEe
Confidence 46799999999999999999984 389999999999999999999999887 799999999 67655443367999999
Q ss_pred cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCC---------------Cccc
Q psy17460 127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL---------------NQSY 191 (216)
Q Consensus 127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~---------------~~~~ 191 (216)
||||....... -........+ +-...+.+.+++.+...|++ +|.+.+.+.... ....
T Consensus 122 NPPyf~~~~~~---~~~~~~~~Ar----~e~~~~le~~i~~a~~~lk~-~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 122 NPPYFKQGSRL---NENPLRAIAR----HEITLDLEDLIRAAAKLLKP-GGRLAFVHRPERLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred CCCCCCCcccc---CcChhhhhhh----hhhcCCHHHHHHHHHHHccC-CCEEEEEecHHHHHHHHHHHHhcCCCceEEE
Confidence 99999762210 0000111111 11122467788888888888 888777555322 2222
Q ss_pred cccccccceEEEEEEEEeeccC
Q psy17460 192 KFHKKSLHDIEVDLLRIITSDY 213 (216)
Q Consensus 192 ~~~~~~~~~~~~~~~r~~~~~~ 213 (216)
..+.+..+.++..+++..+.|.
T Consensus 194 ~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 194 FVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred EecCCCCCcceEEEEEEecCCC
Confidence 4455555666666777666654
No 5
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.77 E-value=1.6e-17 Score=129.59 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=113.5
Q ss_pred cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe
Q psy17460 26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF 105 (216)
Q Consensus 26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~ 105 (216)
..++.+.+.+.+++.+... .++.+|||+|||+|.++++++.+++.+|+++|+++.+++.+++|++.+++++++++.+
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~ 109 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNT 109 (199)
T ss_pred cCcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4677788888888877542 3578999999999999998777767899999999999999999999998878999999
Q ss_pred cccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460 106 EINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY 185 (216)
Q Consensus 106 d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 185 (216)
|+ .+.... ..++||+|++||||..- +...++.... ..+|+.+ ++.+++++..
T Consensus 110 D~--~~~l~~-~~~~fDlV~~DPPy~~g-------~~~~~l~~l~-----------------~~~~l~~-~~iv~ve~~~ 161 (199)
T PRK10909 110 NA--LSFLAQ-PGTPHNVVFVDPPFRKG-------LLEETINLLE-----------------DNGWLAD-EALIYVESEV 161 (199)
T ss_pred hH--HHHHhh-cCCCceEEEECCCCCCC-------hHHHHHHHHH-----------------HCCCcCC-CcEEEEEecC
Confidence 99 664322 12579999999998532 2222222111 2346788 8888888764
Q ss_pred C----C-Cccc-cccccccceEEEEEEEEe
Q psy17460 186 D----L-NQSY-KFHKKSLHDIEVDLLRII 209 (216)
Q Consensus 186 ~----~-~~~~-~~~~~~~~~~~~~~~r~~ 209 (216)
. . ...| ....++++.+.+.+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~k~yG~s~~~~~~~~ 191 (199)
T PRK10909 162 ENGLPTVPANWQLHREKVAGQVAYRLYIRE 191 (199)
T ss_pred CCCcccCCCccEEEEEecCCCEEEEEEEEC
Confidence 2 1 2234 567778888999888753
No 6
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.76 E-value=2.5e-17 Score=125.97 Aligned_cols=125 Identities=19% Similarity=0.348 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS 111 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 111 (216)
-.+.+++.+... ++.+|||+|||+|.+++.+++.++ .+|+++|+++++++.++.|+..+++++++++.+|+ .+
T Consensus 19 ~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~--~~ 92 (170)
T PF05175_consen 19 GTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDL--FE 92 (170)
T ss_dssp HHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST--TT
T ss_pred HHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccc--cc
Confidence 334555656553 677999999999999999999877 48999999999999999999999986699999999 77
Q ss_pred cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCC
Q psy17460 112 LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL 187 (216)
Q Consensus 112 ~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 187 (216)
.... ++||+|++|||++.-.. + . ......+++.+.++|+| +|.+++......
T Consensus 93 ~~~~---~~fD~Iv~NPP~~~~~~--~------~------------~~~~~~~i~~a~~~Lk~-~G~l~lv~~~~~ 144 (170)
T PF05175_consen 93 ALPD---GKFDLIVSNPPFHAGGD--D------G------------LDLLRDFIEQARRYLKP-GGRLFLVINSHL 144 (170)
T ss_dssp TCCT---TCEEEEEE---SBTTSH--C------H------------HHHHHHHHHHHHHHEEE-EEEEEEEEETTS
T ss_pred cccc---cceeEEEEccchhcccc--c------c------------hhhHHHHHHHHHHhccC-CCEEEEEeecCC
Confidence 6543 79999999999864310 0 0 01235677788999999 998877555443
No 7
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.75 E-value=4e-17 Score=125.95 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=105.4
Q ss_pred HHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChH
Q psy17460 5 HIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKE 83 (216)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~ 83 (216)
.....++++ +++.++.+..++...++.........+...++.+|||+|||+|.+++.++..++ .+|+|+|+|++
T Consensus 3 ~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~ 77 (181)
T TIGR00138 3 AYLELLQKW-----NKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHK 77 (181)
T ss_pred HHHHHHHHH-----hhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHH
Confidence 456678888 889999999987776554443332222335688999999999999998887654 68999999999
Q ss_pred HHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHH
Q psy17460 84 ILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRES 163 (216)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~ 163 (216)
+++.++.+++.+++++++++.+|+ .++... ++||+|+++. ++.. ..-.+...+.+++++.++..+......+
T Consensus 78 ~~~~a~~~~~~~~~~~i~~i~~d~--~~~~~~---~~fD~I~s~~-~~~~--~~~~~~~~~~LkpgG~lvi~~~~~~~~~ 149 (181)
T TIGR00138 78 KVAFLREVKAELGLNNVEIVNGRA--EDFQHE---EQFDVITSRA-LASL--NVLLELTLNLLKVGGYFLAYKGKKYLDE 149 (181)
T ss_pred HHHHHHHHHHHhCCCCeEEEecch--hhcccc---CCccEEEehh-hhCH--HHHHHHHHHhcCCCCEEEEEcCCCcHHH
Confidence 999999999888887899999999 665432 6999999986 3321 1112223344444444444444444444
Q ss_pred HHHHHHH
Q psy17460 164 ILKKIQA 170 (216)
Q Consensus 164 ~~~~~~~ 170 (216)
+.....+
T Consensus 150 ~~~~~e~ 156 (181)
T TIGR00138 150 IEEAKRK 156 (181)
T ss_pred HHHHHHh
Confidence 4433333
No 8
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.75 E-value=6.1e-17 Score=123.42 Aligned_cols=159 Identities=17% Similarity=0.283 Sum_probs=121.6
Q ss_pred CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEE
Q psy17460 24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDA 102 (216)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~ 102 (216)
.+..||+..++|.+.+.+... ...|.++||+++|+|.++++++.+|+..++.||.|..++..+++|++..++. ++++
T Consensus 20 ~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~ 97 (187)
T COG0742 20 PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARV 97 (187)
T ss_pred CCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEE
Confidence 456899999999999999862 2589999999999999999999999999999999999999999999998865 7999
Q ss_pred EEecccccccccccc-cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460 103 ILFEINEKSLDSSVF-KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA 181 (216)
Q Consensus 103 ~~~d~~~~~~~~~~~-~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 181 (216)
+.+|+ ........ .+.||+||.||||..- ....... .+.-.-.+||.+ ++.+++
T Consensus 98 ~~~da--~~~L~~~~~~~~FDlVflDPPy~~~-------l~~~~~~---------------~~~~~~~~~L~~-~~~iv~ 152 (187)
T COG0742 98 LRNDA--LRALKQLGTREPFDLVFLDPPYAKG-------LLDKELA---------------LLLLEENGWLKP-GALIVV 152 (187)
T ss_pred EeecH--HHHHHhcCCCCcccEEEeCCCCccc-------hhhHHHH---------------HHHHHhcCCcCC-CcEEEE
Confidence 99999 64432221 1359999999999733 1111110 011113679999 999999
Q ss_pred eeecC-----CCccc-cccccccceEEEEEEEEe
Q psy17460 182 EMKYD-----LNQSY-KFHKKSLHDIEVDLLRII 209 (216)
Q Consensus 182 ~~~~~-----~~~~~-~~~~~~~~~~~~~~~r~~ 209 (216)
|+... ....| ....+.++.+.+.+++..
T Consensus 153 E~~~~~~~~~~~~~~~~~r~k~yG~t~l~~y~~~ 186 (187)
T COG0742 153 EHDKDVELPELPANFELHREKKYGQTKLTFYRRE 186 (187)
T ss_pred EeCCCcCccccCCCeEEEEEeecCCEEEEEEEec
Confidence 98844 34456 444557778888888764
No 9
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.73 E-value=1.1e-16 Score=124.31 Aligned_cols=153 Identities=14% Similarity=0.106 Sum_probs=113.4
Q ss_pred CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEE
Q psy17460 24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDA 102 (216)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~ 102 (216)
...+||...+.+.+.+.+... .++.+|||++||+|.++++++.+|+.+|+++|.++.+++.+++|+..+++. ++++
T Consensus 27 ~~~rpt~~~vrea~f~~l~~~---~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~ 103 (189)
T TIGR00095 27 GSTRPTTRVVRELFFNILRPE---IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEV 103 (189)
T ss_pred CCCCCchHHHHHHHHHHHHHh---cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEE
Confidence 446888999999999987654 468899999999999999999999889999999999999999999999886 6999
Q ss_pred EEeccccccccccc--ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeee
Q psy17460 103 ILFEINEKSLDSSV--FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVI 180 (216)
Q Consensus 103 ~~~d~~~~~~~~~~--~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~ 180 (216)
+.+|+ .+..... ....||+|+.||||... +....+.... ...|+.+ +|.++
T Consensus 104 ~~~D~--~~~l~~~~~~~~~~dvv~~DPPy~~~-------~~~~~l~~l~-----------------~~~~l~~-~~iiv 156 (189)
T TIGR00095 104 VRNSA--LRALKFLAKKPTFDNVIYLDPPFFNG-------ALQALLELCE-----------------NNWILED-TVLIV 156 (189)
T ss_pred EehhH--HHHHHHhhccCCCceEEEECcCCCCC-------cHHHHHHHHH-----------------HCCCCCC-CeEEE
Confidence 99999 6643211 11358999999999633 1222221111 2457788 99999
Q ss_pred eeeecCC-----Cccc-cccccccceEEEEEE
Q psy17460 181 AEMKYDL-----NQSY-KFHKKSLHDIEVDLL 206 (216)
Q Consensus 181 ~~~~~~~-----~~~~-~~~~~~~~~~~~~~~ 206 (216)
.|+.... ...+ ....++++++.+.++
T Consensus 157 ~E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~ 188 (189)
T TIGR00095 157 VEEDREPELPPVEAWLSLKRQKKGGVSYLLYY 188 (189)
T ss_pred EEecCCCCCCCCcCCeEEEEEeecCcEEEEEE
Confidence 9876422 1223 455567777776655
No 10
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.9e-16 Score=129.89 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=98.5
Q ss_pred EEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCC
Q psy17460 52 TVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~ 130 (216)
+|||+|||||++++.++...+ ..|+|+|+|+++++.|+.|+..+++.++.++.+|. .+... ++||+|++||||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl--f~~~~----~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL--FEPLR----GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec--ccccC----CceeEEEeCCCC
Confidence 799999999999999999876 69999999999999999999999976777888888 66553 599999999999
Q ss_pred CCCC-CCCCHHH--H--HHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCccc
Q psy17460 131 GTRN-CGIDLAF--V--QYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY 191 (216)
Q Consensus 131 ~~~~-~~~~~~~--~--~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 191 (216)
...+ ....... . ..++-.+. ........++..+..+|++ +|.+++++++.+.+..
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~-----dGl~~~~~i~~~a~~~l~~-~g~l~le~g~~q~~~v 246 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGG-----DGLEVYRRILGEAPDILKP-GGVLILEIGLTQGEAV 246 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCc-----cHHHHHHHHHHhhHHHcCC-CcEEEEEECCCcHHHH
Confidence 8663 1111110 0 11222222 1122467888899999999 9999999998887754
No 11
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.71 E-value=6.1e-16 Score=128.49 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHH-HHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCC
Q psy17460 3 LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHT-IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD 81 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~ 81 (216)
.++|+..++++ ..+++++..+++|.++.+.+..+... +...+...++++|||+|||+|.++..++..++..|+|+|+|
T Consensus 75 ~~~l~~~l~~l-~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS 153 (314)
T TIGR00452 75 IKRILEEIMAL-MPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPT 153 (314)
T ss_pred HHHHHHHHHhc-CCCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCC
Confidence 57899999999 99999999999999999988776644 55655667899999999999999998888887789999999
Q ss_pred hHHHHHHHHhhhHhC-CCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 82 KEILDIFIDNKNEFE-ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
+.++..++..-.... ..++.+..+++ .+++.. ++||+|+|+-.+.+.
T Consensus 154 ~~ml~q~~~~~~~~~~~~~v~~~~~~i--e~lp~~---~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 154 VLFLCQFEAVRKLLDNDKRAILEPLGI--EQLHEL---YAFDTVFSMGVLYHR 201 (314)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEECCH--HHCCCC---CCcCEEEEcchhhcc
Confidence 999876543222211 12688889999 666543 589999997655443
No 12
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.71 E-value=2e-16 Score=132.98 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=97.3
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE 106 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d 106 (216)
|.++..+...+...+.......++.+|||+|||||.++++++..+. .++|+|+|+.+++.++.|++.+++.+++++.+|
T Consensus 160 ~~~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D 238 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGD 238 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecc
Confidence 4334333333333333333445788999999999999998887765 899999999999999999999988778999999
Q ss_pred ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
+ .+.+... ++||+|++||||+....... . ........+++.+.++|+| +|++++...
T Consensus 239 ~--~~l~~~~--~~~D~Iv~dPPyg~~~~~~~-----------~-----~~~~l~~~~l~~~~r~Lk~-gG~lv~~~~ 295 (329)
T TIGR01177 239 A--TKLPLSS--ESVDAIATDPPYGRSTTAAG-----------D-----GLESLYERSLEEFHEVLKS-EGWIVYAVP 295 (329)
T ss_pred h--hcCCccc--CCCCEEEECCCCcCcccccC-----------C-----chHHHHHHHHHHHHHHccC-CcEEEEEEc
Confidence 9 7766543 68999999999986511000 0 0001134567777888888 888877554
No 13
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.71 E-value=2.7e-16 Score=129.54 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=95.0
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
++.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.|+.|+..+++. +++++.+|+ .+.... ++||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~~~~~~---~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--FAALPG---RKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccCC---CCccEEEE
Confidence 457899999999999999998754 69999999999999999999998875 699999999 654322 58999999
Q ss_pred cCCCCCCCCCC--CHHH---HHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCC
Q psy17460 127 NPPFGTRNCGI--DLAF---VQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL 187 (216)
Q Consensus 127 npp~~~~~~~~--~~~~---~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 187 (216)
||||....... ...+ -..++..+. ........+++.+.++|++ +|.++++++...
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~-----dGl~~~~~il~~a~~~L~~-gG~l~~e~g~~~ 255 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGE-----DGLDLVRRILAEAADHLNE-NGVLVVEVGNSM 255 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCC-----cHHHHHHHHHHHHHHhcCC-CCEEEEEECcCH
Confidence 99998652110 0101 011221111 0111246788889999999 999999999755
No 14
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.71 E-value=2.7e-16 Score=133.82 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS 111 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 111 (216)
-.+.++..+...+. ++.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|++|+..++. +++++.+|+ .+
T Consensus 237 eTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl--~e 311 (423)
T PRK14966 237 ETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSW--FD 311 (423)
T ss_pred cHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcch--hc
Confidence 34455555543322 45699999999999999888754 37999999999999999999988876 899999999 55
Q ss_pred cccccccCcccEEEEcCCCCCCCC-CCCHHHH----HHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460 112 LDSSVFKQKVDTVIMNPPFGTRNC-GIDLAFV----QYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD 186 (216)
Q Consensus 112 ~~~~~~~~~~D~vi~npp~~~~~~-~~~~~~~----~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 186 (216)
..... .++||+|+|||||..... ....... ..++..+. ........+++.+.++|+| +|.+++|.++.
T Consensus 312 ~~l~~-~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~-----dGL~~yr~Ii~~a~~~Lkp-gG~lilEiG~~ 384 (423)
T PRK14966 312 TDMPS-EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFS-----DGLSCIRTLAQGAPDRLAE-GGFLLLEHGFD 384 (423)
T ss_pred ccccc-CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCC-----chHHHHHHHHHHHHHhcCC-CcEEEEEECcc
Confidence 43211 157999999999986411 1110000 11221111 0111246788888999999 99999999988
Q ss_pred CCccc
Q psy17460 187 LNQSY 191 (216)
Q Consensus 187 ~~~~~ 191 (216)
+....
T Consensus 385 Q~e~V 389 (423)
T PRK14966 385 QGAAV 389 (423)
T ss_pred HHHHH
Confidence 76654
No 15
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.70 E-value=9.7e-17 Score=114.88 Aligned_cols=114 Identities=21% Similarity=0.329 Sum_probs=86.1
Q ss_pred CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
|.+|||+|||+|.+++.+++.+..+++|+|+|+.+++.++.++...+.. +++++.+|+ .+.......++||+|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA--RDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH--HHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch--hhchhhccCceeEEEEECC
Confidence 5689999999999999999887679999999999999999999998874 799999999 7765222237999999999
Q ss_pred CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460 129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM 183 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 183 (216)
||+....... ........+++.+.++|++ +|.+++-.
T Consensus 79 P~~~~~~~~~-----------------~~~~~~~~~~~~~~~~L~~-gG~~~~~~ 115 (117)
T PF13659_consen 79 PYGPRSGDKA-----------------ALRRLYSRFLEAAARLLKP-GGVLVFIT 115 (117)
T ss_dssp STTSBTT---------------------GGCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCccccccch-----------------hhHHHHHHHHHHHHHHcCC-CeEEEEEe
Confidence 9985410000 0001334677788899999 88887643
No 16
>PHA03412 putative methyltransferase; Provisional
Probab=99.70 E-value=2.8e-16 Score=124.21 Aligned_cols=107 Identities=20% Similarity=0.219 Sum_probs=84.2
Q ss_pred HHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc----CCCEEEEEeCChHHHH
Q psy17460 11 QQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL----GADFCFALECDKEILD 86 (216)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~----~~~~v~~iD~~~~~~~ 86 (216)
.+++........+.+||.||..++..++.. . ..+.+|||+|||+|.+++.+++. ...+|+++|+|+.+++
T Consensus 17 ~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~--~----~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~ 90 (241)
T PHA03412 17 ENFHEGAFTNNSELGAFFTPIGLARDFTID--A----CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK 90 (241)
T ss_pred hhcccccccccccCCccCCCHHHHHHHHHh--c----cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH
Confidence 444444445567789999999998876422 1 24669999999999999988764 2358999999999999
Q ss_pred HHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 87 IFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
.|+.|.. ++.++.+|+ ...... ++||+||+||||+..
T Consensus 91 ~Ar~n~~-----~~~~~~~D~--~~~~~~---~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 91 LGKRIVP-----EATWINADA--LTTEFD---TLFDMAISNPPFGKI 127 (241)
T ss_pred HHHhhcc-----CCEEEEcch--hccccc---CCccEEEECCCCCCc
Confidence 9998863 578999999 665433 689999999999965
No 17
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.69 E-value=6.3e-16 Score=127.49 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=96.9
Q ss_pred CEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460 51 KTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.|+.|+..+++. +++++.+|+ .+.... ++||+|++||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~--~~~~~~---~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL--FEPLAG---QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hccCcC---CCccEEEECC
Confidence 6899999999999999998765 79999999999999999999988886 499999999 664321 4899999999
Q ss_pred CCCCCCCCCC----HHH-HHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCccc
Q psy17460 129 PFGTRNCGID----LAF-VQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY 191 (216)
Q Consensus 129 p~~~~~~~~~----~~~-~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 191 (216)
||........ ..+ -..++..+. ........++..+.++|++ +|.++++++..+....
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~-----dgl~~~~~ii~~a~~~L~~-gG~l~~e~g~~q~~~~ 252 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGD-----DGLNILRQIIELAPDYLKP-NGFLVCEIGNWQQKSL 252 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCC-----cHHHHHHHHHHHHHHhccC-CCEEEEEECccHHHHH
Confidence 9986521000 000 011221111 0111356788889999999 9999999998766554
No 18
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.68 E-value=1.8e-15 Score=116.53 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=93.1
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.++.+|||+|||+|.++..++..+. +|+++|+++++++.++.|+..++. +++++.+|+ .+... ++||+|++|
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~--~~~~~----~~fD~Vi~n 89 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDL--FKGVR----GKFDVILFN 89 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccc--ccccC----CcccEEEEC
Confidence 3667899999999999999999877 899999999999999999988877 789999999 66542 589999999
Q ss_pred CCCCCCCC-CCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460 128 PPFGTRNC-GIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD 186 (216)
Q Consensus 128 pp~~~~~~-~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 186 (216)
|||+.... .....+...++..+.. .......+++.+.++|+| +|++++.....
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~Lk~-gG~~~~~~~~~ 143 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKD-----GRKVIDRFLDELPEILKE-GGRVQLIQSSL 143 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCc-----hHHHHHHHHHhHHHhhCC-CCEEEEEEecc
Confidence 99986621 1111122333332221 111245678888899999 99888765543
No 19
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.67 E-value=2.5e-15 Score=127.52 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=87.4
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC---ceEEEEecccccccccccccCcccEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT---NCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~---~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
.+.+|||+|||+|.+++.+++.++ .+|+++|+|+.+++.++.|+..++.. +++++.+|+ ...... ++||+|
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~--l~~~~~---~~fDlI 302 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA--LSGVEP---FRFNAV 302 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc--cccCCC---CCEEEE
Confidence 346899999999999999998865 79999999999999999999877642 689999998 654322 589999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460 125 IMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD 186 (216)
Q Consensus 125 i~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 186 (216)
+|||||+..... .......+++.+.++|++ +|.+++.....
T Consensus 303 lsNPPfh~~~~~--------------------~~~ia~~l~~~a~~~Lkp-GG~L~iV~nr~ 343 (378)
T PRK15001 303 LCNPPFHQQHAL--------------------TDNVAWEMFHHARRCLKI-NGELYIVANRH 343 (378)
T ss_pred EECcCcccCccC--------------------CHHHHHHHHHHHHHhccc-CCEEEEEEecC
Confidence 999999854110 001224577788889999 99988876543
No 20
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.66 E-value=1.1e-15 Score=127.16 Aligned_cols=130 Identities=14% Similarity=0.106 Sum_probs=94.2
Q ss_pred CEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460 51 KTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
.+|||+|||+|.+++.++...+ .+|+++|+|+.+++.|+.|+..+++. +++++.+|+ .+.... ++||+|++||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~--~~~l~~---~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL--FAALPG---RRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch--hhhCCC---CCccEEEECC
Confidence 6899999999999999888754 79999999999999999999988875 699999998 654322 5899999999
Q ss_pred CCCCCCCCCCHHHHHHHhh--cCCceEEEe-eCcchHHHHHHHHHhcCccceeeeeeeecCCCc
Q psy17460 129 PFGTRNCGIDLAFVQYAAD--ISKVVYSLH-KTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQ 189 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~--~~~~ly~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 189 (216)
||...... ..+..... +...++.-. .......+++.+.++|+| +|.++++++.....
T Consensus 210 Pyi~~~~~---~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p-gG~l~~E~g~~~~~ 269 (307)
T PRK11805 210 PYVDAEDM---ADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE-DGVLVVEVGNSRVH 269 (307)
T ss_pred CCCCccch---hhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC-CCEEEEEECcCHHH
Confidence 99854110 00000111 100011100 011246788889999999 99999999976433
No 21
>PRK14967 putative methyltransferase; Provisional
Probab=99.65 E-value=2.7e-15 Score=119.55 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=74.0
Q ss_pred HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS 114 (216)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 114 (216)
+.++..+... ...++.+|||+|||+|.++..+++.+..+++++|+++.+++.++.|+..++. +++++.+|+ .+...
T Consensus 23 ~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~--~~~~~ 98 (223)
T PRK14967 23 QLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDW--ARAVE 98 (223)
T ss_pred HHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECch--hhhcc
Confidence 3444444332 3346789999999999999998887656999999999999999999988887 789999999 65432
Q ss_pred ccccCcccEEEEcCCCCCC
Q psy17460 115 SVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 115 ~~~~~~~D~vi~npp~~~~ 133 (216)
. ++||+|++||||...
T Consensus 99 ~---~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 99 F---RPFDVVVSNPPYVPA 114 (223)
T ss_pred C---CCeeEEEECCCCCCC
Confidence 2 689999999999854
No 22
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.65 E-value=2.3e-15 Score=121.85 Aligned_cols=148 Identities=11% Similarity=0.036 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhhcCC-CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460 32 HLAATILHTIQNNYND-IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE 109 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~-~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 109 (216)
...+.++..+...+.. ..+.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.+++|+..++ ++++.+|+
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~-- 142 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDL-- 142 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeec--
Confidence 3445555554433221 2345899999999999999887643 589999999999999999998765 47899999
Q ss_pred cccccccccCcccEEEEcCCCCCCCCC--C--CHHHH--HHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460 110 KSLDSSVFKQKVDTVIMNPPFGTRNCG--I--DLAFV--QYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM 183 (216)
Q Consensus 110 ~~~~~~~~~~~~D~vi~npp~~~~~~~--~--~~~~~--~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 183 (216)
.+.......++||+|++||||...... . +.+.. ..++..+. ........+++.+.++|++ +|.+++++
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~-----dgl~~~~~i~~~a~~~L~~-gG~l~l~~ 216 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGA-----DGLDVLRRVAAGAPDWLAP-GGHLLVET 216 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCC-----cHHHHHHHHHHHHHHhcCC-CCEEEEEE
Confidence 654322112579999999999753100 0 00000 12222111 0111246788888999999 99999999
Q ss_pred ecCCCcc
Q psy17460 184 KYDLNQS 190 (216)
Q Consensus 184 ~~~~~~~ 190 (216)
+..+...
T Consensus 217 ~~~~~~~ 223 (251)
T TIGR03704 217 SERQAPL 223 (251)
T ss_pred CcchHHH
Confidence 8665543
No 23
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3.1e-15 Score=121.55 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=88.2
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.+.+|||+|||.|.+++.+++..+ .+++.+|+|..+++.++.|+..|+.++..++..|. .+... ++||.|+||
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~--~~~v~----~kfd~IisN 231 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL--YEPVE----GKFDLIISN 231 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc--ccccc----ccccEEEeC
Confidence 445899999999999999999876 89999999999999999999999987667778887 66543 599999999
Q ss_pred CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
||||.-... .. ....++++.+.++|++ +|.+.+...
T Consensus 232 PPfh~G~~v--------~~------------~~~~~~i~~A~~~L~~-gGeL~iVan 267 (300)
T COG2813 232 PPFHAGKAV--------VH------------SLAQEIIAAAARHLKP-GGELWIVAN 267 (300)
T ss_pred CCccCCcch--------hH------------HHHHHHHHHHHHhhcc-CCEEEEEEc
Confidence 999843100 00 1124788889999999 998888776
No 24
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.65 E-value=1e-15 Score=117.92 Aligned_cols=97 Identities=27% Similarity=0.371 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CE---------EEEEeCChHHHHHHHHhhhHhCCC-ceE
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DF---------CFALECDKEILDIFIDNKNEFEIT-NCD 101 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~---------v~~iD~~~~~~~~~~~~~~~~~~~-~v~ 101 (216)
+.+.++..+.......++..|+|+.||+|++.++++..+. .. ++|+|+++++++.++.|++..++. .+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 4444444444444456888999999999999999887644 33 889999999999999999999887 589
Q ss_pred EEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 102 AILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 102 ~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
+..+|+ .+++... +++|.|++||||+.+
T Consensus 92 ~~~~D~--~~l~~~~--~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 92 FIQWDA--RELPLPD--GSVDAIVTNPPYGRR 119 (179)
T ss_dssp EEE--G--GGGGGTT--SBSCEEEEE--STTS
T ss_pred EEecch--hhccccc--CCCCEEEECcchhhh
Confidence 999999 7777322 799999999999976
No 25
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.65 E-value=4.1e-15 Score=120.22 Aligned_cols=134 Identities=16% Similarity=0.137 Sum_probs=94.4
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.+.+|||+|||+|.++..++...+ .+++|+|+++.+++.++.++..+++.+++++.+|+ .+.... ++||+|++|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~---~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW--FEPLPG---GKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hccCcC---CceeEEEEC
Confidence 456899999999999999888744 69999999999999999999988887799999999 663322 789999999
Q ss_pred CCCCCCCCCCCHHHHHHHhhcCCc--eEEE-eeCcchHHHHHHHHHhcCccceeeeeeeecCCCcc
Q psy17460 128 PPFGTRNCGIDLAFVQYAADISKV--VYSL-HKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQS 190 (216)
Q Consensus 128 pp~~~~~~~~~~~~~~~~l~~~~~--ly~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 190 (216)
|||........ ........... ++.. ........+++.+.++|++ +|.++++.++.....
T Consensus 162 pPy~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~-gG~~~~~~~~~~~~~ 224 (251)
T TIGR03534 162 PPYIPEADIHL--LDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP-GGWLLLEIGYDQGEA 224 (251)
T ss_pred CCCCchhhhhh--cChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc-CCEEEEEECccHHHH
Confidence 99985411000 00000000000 1100 0011234677888999999 999999888765444
No 26
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=4.7e-15 Score=117.99 Aligned_cols=104 Identities=15% Similarity=0.209 Sum_probs=84.3
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.+|.+|||+|||||-+++.+++. +.++|+|+|+|++|++.+++.....+..+++++.+|+ .++|+.+ ++||+|.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA--e~LPf~D--~sFD~vt~ 125 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA--ENLPFPD--NSFDAVTI 125 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech--hhCCCCC--CccCEEEe
Confidence 37999999999999999998887 4589999999999999999999987776799999999 8888876 89999999
Q ss_pred cCCCCCC-CCCCCHHHHHHHhhcCCceEEE
Q psy17460 127 NPPFGTR-NCGIDLAFVQYAADISKVVYSL 155 (216)
Q Consensus 127 npp~~~~-~~~~~~~~~~~~l~~~~~ly~~ 155 (216)
.--+.+. +....++.+.+++++++.+.++
T Consensus 126 ~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 126 SFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred eehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 5554444 4444556666666666653333
No 27
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.65 E-value=2.5e-15 Score=132.68 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=96.1
Q ss_pred CCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
++.+|||+|||+|.+++.++... ..+|+++|+|+.+++.|+.|+..+++. +++++.+|+ .+.... ++||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~--~~~~~~---~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW--FENIEK---QKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch--hhhCcC---CCccEEEE
Confidence 35689999999999999887653 379999999999999999999888875 699999998 654322 58999999
Q ss_pred cCCCCCCCCC--CCHHHH----HHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCccc
Q psy17460 127 NPPFGTRNCG--IDLAFV----QYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY 191 (216)
Q Consensus 127 npp~~~~~~~--~~~~~~----~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 191 (216)
||||...... ...... ..++..+. ........+++.+.++|++ +|.+++++++.+....
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~-----dGl~~~~~il~~a~~~L~~-gG~l~lEig~~q~~~v 277 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEE-----DGLQAYFIIAENAKQFLKP-NGKIILEIGFKQEEAV 277 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCc-----cHHHHHHHHHHHHHHhccC-CCEEEEEECCchHHHH
Confidence 9999975221 111100 11222111 0111245678888999999 9999999998765543
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.64 E-value=3.7e-15 Score=105.78 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=82.3
Q ss_pred CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
|+.+|||+|||+|.++..+++. ...+|+|+|+|+++++.+++++...+.. +++++.+|+ ....... +.||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~---~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFL---EPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTS---SCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccC---CCCCEEEE
Confidence 5789999999999999999983 3469999999999999999999655543 899999999 2333322 68999999
Q ss_pred cC-CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460 127 NP-PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM 183 (216)
Q Consensus 127 np-p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 183 (216)
+. ..+.. ........+++.+.++|+| +|+++++.
T Consensus 77 ~~~~~~~~----------------------~~~~~~~~~l~~~~~~L~p-gG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFL----------------------LPLDERRRVLERIRRLLKP-GGRLVINT 111 (112)
T ss_dssp CSGSGGGC----------------------CHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCCccccc----------------------cchhHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 77 22211 0002345667778899999 99998864
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.64 E-value=5.8e-15 Score=110.75 Aligned_cols=82 Identities=24% Similarity=0.375 Sum_probs=69.0
Q ss_pred CCCEEEEecCCCCHhHHHHh-HcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSI-LLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~-~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
++.+|||+|||+|.++..++ ..++ .+++|+|+|+++++.|+.+++..+.++++++.+|+ .+++.... +.||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~--~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI--EDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT--TCGCGCSS-TTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeeh--hccccccC-CCeeEEEE
Confidence 67899999999999999999 4443 79999999999999999999999988899999999 66542111 69999999
Q ss_pred cCCCCCC
Q psy17460 127 NPPFGTR 133 (216)
Q Consensus 127 npp~~~~ 133 (216)
++++++.
T Consensus 80 ~~~l~~~ 86 (152)
T PF13847_consen 80 NGVLHHF 86 (152)
T ss_dssp ESTGGGT
T ss_pred cCchhhc
Confidence 9987654
No 30
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.63 E-value=3.1e-15 Score=119.73 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=69.7
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI 125 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi 125 (216)
.+|.+|||+|||||.++..+++. ++ .+|+|+|+|++|++.|++++...+..+++++++|+ .++++.+ ++||+|+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da--~~lp~~d--~sfD~v~ 121 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA--EDLPFPD--NSFDAVT 121 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT--TB--S-T--T-EEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH--HHhcCCC--CceeEEE
Confidence 47889999999999999998876 44 79999999999999999999988777899999999 7777765 8999999
Q ss_pred EcCCCCCC-CCCCCHHHHHHHhhcCCceE
Q psy17460 126 MNPPFGTR-NCGIDLAFVQYAADISKVVY 153 (216)
Q Consensus 126 ~npp~~~~-~~~~~~~~~~~~l~~~~~ly 153 (216)
|.--++.. +.....+.+.+++++++.+.
T Consensus 122 ~~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 122 CSFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp EES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred HHhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 95544433 33344555566666666633
No 31
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.62 E-value=1.6e-14 Score=109.72 Aligned_cols=119 Identities=21% Similarity=0.288 Sum_probs=97.2
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460 28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFE 106 (216)
Q Consensus 28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d 106 (216)
.|.++++...++.+.. .++++++|+|||||+++++++..++ .+|+++|.++++++..++|....+.+|+.++.|+
T Consensus 17 ~TK~EIRal~ls~L~~----~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~ 92 (187)
T COG2242 17 MTKEEIRALTLSKLRP----RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD 92 (187)
T ss_pred CcHHHHHHHHHHhhCC----CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc
Confidence 6778888777776654 5899999999999999999997776 8999999999999999999999999899999999
Q ss_pred ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
+ .+..... .+||.||..-. . ..+.+++.+...|++ +|+++...-
T Consensus 93 A--p~~L~~~--~~~daiFIGGg-~----------------------------~i~~ile~~~~~l~~-ggrlV~nai 136 (187)
T COG2242 93 A--PEALPDL--PSPDAIFIGGG-G----------------------------NIEEILEAAWERLKP-GGRLVANAI 136 (187)
T ss_pred c--hHhhcCC--CCCCEEEECCC-C----------------------------CHHHHHHHHHHHcCc-CCeEEEEee
Confidence 9 8876543 37999998653 1 335666667777777 777777544
No 32
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.62 E-value=3.7e-15 Score=123.22 Aligned_cols=129 Identities=20% Similarity=0.283 Sum_probs=101.6
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe-c
Q psy17460 28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF-E 106 (216)
Q Consensus 28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~-d 106 (216)
..+..++..|+++..- .+|+.|||++||||.+.+++...|. +++|.|++..|++-|+.|++..++....++.. |
T Consensus 180 s~~P~lAR~mVNLa~v----~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~D 254 (347)
T COG1041 180 SMDPRLARAMVNLARV----KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLD 254 (347)
T ss_pred CcCHHHHHHHHHHhcc----ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecc
Confidence 3345777777777654 4899999999999999999999987 99999999999999999999999877777777 9
Q ss_pred ccccccccccccCcccEEEEcCCCCCC--CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNPPFGTR--NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~npp~~~~--~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
+ .++++.. +++|.|++||||+.. ...... ..-....++.+.+.|++ +|++++-..
T Consensus 255 a--~~lpl~~--~~vdaIatDPPYGrst~~~~~~l------------------~~Ly~~~le~~~evLk~-gG~~vf~~p 311 (347)
T COG1041 255 A--TNLPLRD--NSVDAIATDPPYGRSTKIKGEGL------------------DELYEEALESASEVLKP-GGRIVFAAP 311 (347)
T ss_pred c--ccCCCCC--CccceEEecCCCCcccccccccH------------------HHHHHHHHHHHHHHhhc-CcEEEEecC
Confidence 9 8888653 579999999999976 111110 01124566667888888 888887665
No 33
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=1.3e-14 Score=119.04 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=98.5
Q ss_pred HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460 36 TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS 114 (216)
Q Consensus 36 ~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 114 (216)
.++..+.......++.+|||+|||+|.++..++...+ .+++|+|+++.+++.++.|+......+++++.+|+ .+...
T Consensus 95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~--~~~~~ 172 (275)
T PRK09328 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW--FEPLP 172 (275)
T ss_pred HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc--cCcCC
Confidence 3334333222334677999999999999999888754 79999999999999999998832333799999999 65433
Q ss_pred ccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEE-eeCcchHHHHHHHHHhcCccceeeeeeeecCCCccc
Q psy17460 115 SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSL-HKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY 191 (216)
Q Consensus 115 ~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 191 (216)
. ++||+|++||||....... ............ ++.. ........+++.+.++|++ +|.++++++......+
T Consensus 173 ~---~~fD~Iv~npPy~~~~~~~--~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~-gG~l~~e~g~~~~~~~ 246 (275)
T PRK09328 173 G---GRFDLIVSNPPYIPEADIH--LLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP-GGWLLLEIGYDQGEAV 246 (275)
T ss_pred C---CceeEEEECCCcCCcchhh--hCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc-CCEEEEEECchHHHHH
Confidence 2 6899999999997541100 000001100000 1100 0111346677888899999 9999999987655544
No 34
>PHA03411 putative methyltransferase; Provisional
Probab=99.60 E-value=1.8e-14 Score=116.41 Aligned_cols=94 Identities=28% Similarity=0.319 Sum_probs=76.0
Q ss_pred CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEE
Q psy17460 24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDA 102 (216)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~ 102 (216)
.++|.||..+...++ .. ...+.+|||+|||+|.++..++... ..+|+|+|+++.+++.++++.. ++++
T Consensus 45 ~G~FfTP~~i~~~f~---~~---~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----~v~~ 113 (279)
T PHA03411 45 SGAFFTPEGLAWDFT---ID---AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----EAEW 113 (279)
T ss_pred ceeEcCCHHHHHHHH---hc---cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----CCEE
Confidence 689999999875542 11 1245689999999999998887764 3699999999999999998742 6889
Q ss_pred EEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 103 ILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 103 ~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
+.+|+ .++... .+||+|++||||+..
T Consensus 114 v~~D~--~e~~~~---~kFDlIIsNPPF~~l 139 (279)
T PHA03411 114 ITSDV--FEFESN---EKFDVVISNPPFGKI 139 (279)
T ss_pred EECch--hhhccc---CCCcEEEEcCCcccc
Confidence 99999 776533 689999999999976
No 35
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.59 E-value=1.8e-14 Score=121.31 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=86.2
Q ss_pred CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
..+|||+|||+|.++..+++..+ .+|+++|+|+.+++.++.++..+++ ..+++.+|+ .... . ++||+|+|||
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~--~~~~-~---~~fDlIvsNP 269 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNV--FSDI-K---GRFDMIISNP 269 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEccc--cccc-C---CCccEEEECC
Confidence 44899999999999999998765 6899999999999999999999887 567888888 6533 2 6899999999
Q ss_pred CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460 129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY 185 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 185 (216)
|||.-... .......+++.+.++|+| +|.+++..+.
T Consensus 270 PFH~g~~~--------------------~~~~~~~~i~~a~~~Lkp-gG~L~iVan~ 305 (342)
T PRK09489 270 PFHDGIQT--------------------SLDAAQTLIRGAVRHLNS-GGELRIVANA 305 (342)
T ss_pred CccCCccc--------------------cHHHHHHHHHHHHHhcCc-CCEEEEEEeC
Confidence 99853000 011235678888999999 9998876664
No 36
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.59 E-value=8.7e-14 Score=116.52 Aligned_cols=148 Identities=20% Similarity=0.262 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhhcccCCCcccCccccCCHHH-HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCC
Q psy17460 3 LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHL-AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD 81 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~ 81 (216)
+++++..++.+ ..++..+..+..+....+. .......+...+...+|++|||+|||+|..+..++..++..|+|+|++
T Consensus 76 ~~~l~~~l~~~-~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S 154 (322)
T PRK15068 76 RKRIENLLRAL-MPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPS 154 (322)
T ss_pred HHHHHHHHHhh-cCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCC
Confidence 56788888888 5566666666555544333 333344445555556889999999999999999999888789999999
Q ss_pred hHHHHHHHHhhhHhCC-CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcc
Q psy17460 82 KEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTST 160 (216)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~ 160 (216)
+.++..++......+. .+++++.+|+ .+++.. ++||+|+|...+++. .+
T Consensus 155 ~~~l~q~~a~~~~~~~~~~i~~~~~d~--e~lp~~---~~FD~V~s~~vl~H~-------------------------~d 204 (322)
T PRK15068 155 QLFLCQFEAVRKLLGNDQRAHLLPLGI--EQLPAL---KAFDTVFSMGVLYHR-------------------------RS 204 (322)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEeCCH--HHCCCc---CCcCEEEECChhhcc-------------------------CC
Confidence 9988755443332221 2799999999 666652 789999996544332 12
Q ss_pred hHHHHHHHHHhcCccceeeeee
Q psy17460 161 RESILKKIQAFKNVEQVDVIAE 182 (216)
Q Consensus 161 ~~~~~~~~~~~l~~~~g~~~~~ 182 (216)
...+++.+.+.|+| +|.++++
T Consensus 205 p~~~L~~l~~~Lkp-GG~lvl~ 225 (322)
T PRK15068 205 PLDHLKQLKDQLVP-GGELVLE 225 (322)
T ss_pred HHHHHHHHHHhcCC-CcEEEEE
Confidence 34455556666666 6666654
No 37
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.58 E-value=3.1e-14 Score=121.65 Aligned_cols=124 Identities=19% Similarity=0.286 Sum_probs=96.6
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE 106 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d 106 (216)
|.+.....+.+++.+...+...++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+.|++.+++++++++.+|
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d 289 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD 289 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 666778888888777654333456799999999999999999776 5899999999999999999999998789999999
Q ss_pred ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeC
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKT 158 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~ 158 (216)
+ .+..... .++||+|++|||+ .+.+.+.++........ +|+.+..
T Consensus 290 ~--~~~~~~~-~~~~D~vi~DPPr----~G~~~~~l~~l~~~~p~~ivyvsc~p 336 (374)
T TIGR02085 290 S--AKFATAQ-MSAPELVLVNPPR----RGIGKELCDYLSQMAPKFILYSSCNA 336 (374)
T ss_pred H--HHHHHhc-CCCCCEEEECCCC----CCCcHHHHHHHHhcCCCeEEEEEeCH
Confidence 9 5543221 1469999999996 35566666666555433 7777744
No 38
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.58 E-value=3.7e-14 Score=118.59 Aligned_cols=126 Identities=21% Similarity=0.336 Sum_probs=93.0
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE 106 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d 106 (216)
|++.....+.++..+...+...++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+.|+..+++++++++.+|
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D 229 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALD 229 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC
Confidence 445556777777766655443467899999999999999999986 5999999999999999999999998789999999
Q ss_pred ccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeCcc
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKTST 160 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~~~ 160 (216)
+ .++... ..+.||+|++|||. .+............... +|+.+...+
T Consensus 230 ~--~~~~~~-~~~~~D~Vv~dPPr----~G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 230 S--TQFATA-QGEVPDLVLVNPPR----RGIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred H--HHHHHh-cCCCCeEEEECCCC----CCccHHHHHHHHHcCCCeEEEEECCccc
Confidence 9 665422 12479999999994 33333333333333222 777765554
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.58 E-value=2.4e-13 Score=105.26 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=76.8
Q ss_pred CCcccCccccCCHHHHH-HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhC
Q psy17460 19 NPKVHLEQYHTPPHLAA-TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFE 96 (216)
Q Consensus 19 ~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~ 96 (216)
+.+..+..-.+.+..+. ++++.+...-...++.+|||+|||+|..++.++... ..+|+++|+++++++.+++++..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~ 93 (187)
T PRK00107 14 NKKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG 93 (187)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC
Confidence 44444444444444443 333433322112247899999999999999888653 3799999999999999999999999
Q ss_pred CCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 97 ITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 97 ~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
.++++++.+|+ .+... .++||+|+++.
T Consensus 94 l~~i~~~~~d~--~~~~~---~~~fDlV~~~~ 120 (187)
T PRK00107 94 LKNVTVVHGRA--EEFGQ---EEKFDVVTSRA 120 (187)
T ss_pred CCCEEEEeccH--hhCCC---CCCccEEEEcc
Confidence 87799999999 66554 27999999974
No 40
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=6e-14 Score=109.76 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=67.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
++.+|||+|||+|..+..+++.+. +|+|+|+|+++++.++.+....++++++++.+|+ .+.+.. ++||+|+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~--~~~~~~---~~fD~I~~~~ 103 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL--NNLTFD---GEYDFILSTV 103 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh--hhCCcC---CCcCEEEEec
Confidence 567999999999999999999875 8999999999999999999888876799999999 665543 6799999988
Q ss_pred CCCC
Q psy17460 129 PFGT 132 (216)
Q Consensus 129 p~~~ 132 (216)
.+++
T Consensus 104 ~~~~ 107 (197)
T PRK11207 104 VLMF 107 (197)
T ss_pred chhh
Confidence 7654
No 41
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.57 E-value=4.6e-14 Score=110.25 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=66.3
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.++.+....++ ++.+..+|+ ...+.. ++||+|+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~--~~~~~~---~~fD~I~~~~ 102 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDI--NAAALN---EDYDFIFSTV 102 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccc--hhcccc---CCCCEEEEec
Confidence 567999999999999999999875 899999999999999998887777 578888888 554433 5899999999
Q ss_pred CCCCC
Q psy17460 129 PFGTR 133 (216)
Q Consensus 129 p~~~~ 133 (216)
+|+..
T Consensus 103 ~~~~~ 107 (195)
T TIGR00477 103 VFMFL 107 (195)
T ss_pred ccccC
Confidence 88754
No 42
>PLN02672 methionine S-methyltransferase
Probab=99.56 E-value=4.2e-14 Score=132.52 Aligned_cols=137 Identities=11% Similarity=0.054 Sum_probs=99.2
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC----------------CceEEEEecccccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI----------------TNCDAILFEINEKS 111 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~----------------~~v~~~~~d~~~~~ 111 (216)
++.+|||+|||+|.+++.+++..+ .+|+|+|+|+++++.|+.|+..+++ .+++++.+|+ .+
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl--~~ 195 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDL--LG 195 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECch--hh
Confidence 457899999999999999988754 7999999999999999999987643 2699999999 76
Q ss_pred cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcC---------Cc--eEEEe----eCcchHHHHHHHHHhcCccc
Q psy17460 112 LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADIS---------KV--VYSLH----KTSTRESILKKIQAFKNVEQ 176 (216)
Q Consensus 112 ~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~---------~~--ly~~~----~~~~~~~~~~~~~~~l~~~~ 176 (216)
..... ..+||+|++||||........ ....+.+.. +. ++..+ .......++..+.++|+| +
T Consensus 196 ~~~~~-~~~fDlIVSNPPYI~~~e~~~--l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p-g 271 (1082)
T PLN02672 196 YCRDN-NIELDRIVGCIPQILNPNPEA--MSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP-M 271 (1082)
T ss_pred hcccc-CCceEEEEECCCcCCCcchhh--cChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC-C
Confidence 54211 136999999999996521100 011111110 00 22211 122357888899999999 9
Q ss_pred eeeeeeeecCCCccc
Q psy17460 177 VDVIAEMKYDLNQSY 191 (216)
Q Consensus 177 g~~~~~~~~~~~~~~ 191 (216)
|.+++|+|..+.+..
T Consensus 272 G~l~lEiG~~q~~~v 286 (1082)
T PLN02672 272 GIMIFNMGGRPGQAV 286 (1082)
T ss_pred CEEEEEECccHHHHH
Confidence 999999999988865
No 43
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.56 E-value=5.8e-14 Score=120.36 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=71.3
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEeccccccccccc--ccCcccEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSV--FKQKVDTV 124 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~--~~~~~D~v 124 (216)
++++|||+|||||.+++.++..++.+|+++|+|+.+++.+++|+..+++. +++++.+|+ .++.... ..++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~--~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV--FKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH--HHHHHHHHhcCCCCCEE
Confidence 67899999999999999877777779999999999999999999999985 699999999 7764221 12589999
Q ss_pred EEcCCCCCC
Q psy17460 125 IMNPPFGTR 133 (216)
Q Consensus 125 i~npp~~~~ 133 (216)
|+||||...
T Consensus 298 ilDPP~f~~ 306 (396)
T PRK15128 298 VMDPPKFVE 306 (396)
T ss_pred EECCCCCCC
Confidence 999999654
No 44
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.56 E-value=2e-13 Score=105.92 Aligned_cols=92 Identities=22% Similarity=0.263 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460 28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFE 106 (216)
Q Consensus 28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d 106 (216)
.+.+.+++.++..+.. .++.+|||+|||+|.+++.+++.++ .+|+++|+++.+++.+++|+..+++.+++++.+|
T Consensus 14 ~~~~~~r~~~~~~l~~----~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d 89 (187)
T PRK08287 14 MTKEEVRALALSKLEL----HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE 89 (187)
T ss_pred CchHHHHHHHHHhcCC----CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 4455566555555533 3678999999999999999888755 7999999999999999999988887689999999
Q ss_pred ccccccccccccCcccEEEEcCC
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNPP 129 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~npp 129 (216)
+ .... . ++||+|+++..
T Consensus 90 ~--~~~~-~---~~~D~v~~~~~ 106 (187)
T PRK08287 90 A--PIEL-P---GKADAIFIGGS 106 (187)
T ss_pred c--hhhc-C---cCCCEEEECCC
Confidence 8 4322 2 58999999754
No 45
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.56 E-value=2.8e-13 Score=107.36 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=68.6
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
...++.+|||+|||+|.++..+++... .+|+++|+++++++.|++++...++++++++.+|+ .+..... .+||+
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~--~~~~~~~--~~fD~ 149 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG--TQGWEPL--APYDR 149 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc--ccCCccc--CCCCE
Confidence 445889999999999999998888742 57999999999999999999998887899999999 6544322 68999
Q ss_pred EEEcCCC
Q psy17460 124 VIMNPPF 130 (216)
Q Consensus 124 vi~npp~ 130 (216)
|+++++.
T Consensus 150 Ii~~~~~ 156 (215)
T TIGR00080 150 IYVTAAG 156 (215)
T ss_pred EEEcCCc
Confidence 9998764
No 46
>PRK14968 putative methyltransferase; Provisional
Probab=99.55 E-value=2.5e-13 Score=104.99 Aligned_cols=140 Identities=16% Similarity=0.234 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc--eEEEEec
Q psy17460 29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN--CDAILFE 106 (216)
Q Consensus 29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~--v~~~~~d 106 (216)
+|......++..+.. .++++|||+|||+|.++..++..+ .+++++|+++++++.+++++..+++.+ +.++.+|
T Consensus 7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d 81 (188)
T PRK14968 7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD 81 (188)
T ss_pred CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecc
Confidence 344444445554443 477899999999999999988885 599999999999999999998887754 8999999
Q ss_pred ccccccccccccCcccEEEEcCCCCCCCCCCC-HHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGID-LAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~-~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
+ .+.... ++||+|++||||........ ..+...+...+. ........+++.+.++|++ +|.+++...
T Consensus 82 ~--~~~~~~---~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~Lk~-gG~~~~~~~ 149 (188)
T PRK14968 82 L--FEPFRG---DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGK-----DGREVIDRFLDEVGRYLKP-GGRILLLQS 149 (188)
T ss_pred c--cccccc---cCceEEEECCCcCCCCchhhhhhhhhhhhccCc-----ChHHHHHHHHHHHHHhcCC-CeEEEEEEc
Confidence 9 665433 48999999999975311000 001111111111 0111245677778888899 887776554
No 47
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.54 E-value=2.7e-13 Score=108.39 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=69.7
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
...++.+|||+|||+|..+..+++. ++ .+|+|+|+++++++.++.++...+.++++++.+|+ .+.+... ++||+
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~--~~fD~ 117 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA--MELPFDD--NSFDY 117 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech--hcCCCCC--CCccE
Confidence 3346889999999999999988876 34 69999999999999999998877776899999999 6655432 78999
Q ss_pred EEEcCCCCCC
Q psy17460 124 VIMNPPFGTR 133 (216)
Q Consensus 124 vi~npp~~~~ 133 (216)
|+++.++++.
T Consensus 118 V~~~~~l~~~ 127 (231)
T TIGR02752 118 VTIGFGLRNV 127 (231)
T ss_pred EEEecccccC
Confidence 9998776543
No 48
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=6e-13 Score=104.71 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=83.7
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCccc
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVD 122 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D 122 (216)
...++.+|||+|||+|..+..+++. + .++|+++|+++++++.+++|+..++.. +++++.+|+ .+..... .+||
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~--~~~~~~~--~~fD 144 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG--KRGLEKH--APFD 144 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc--ccCCccC--CCcc
Confidence 3457889999999999999887765 2 368999999999999999999888875 599999999 6544332 6899
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCccc
Q psy17460 123 TVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSY 191 (216)
Q Consensus 123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 191 (216)
+|+++.+.... .....+.|++ +|++++..+-...+.+
T Consensus 145 ~Ii~~~~~~~~-------------------------------~~~l~~~L~~-gG~lvi~~~~~~~~~~ 181 (205)
T PRK13944 145 AIIVTAAASTI-------------------------------PSALVRQLKD-GGVLVIPVEEGVGQVL 181 (205)
T ss_pred EEEEccCcchh-------------------------------hHHHHHhcCc-CcEEEEEEcCCCceEE
Confidence 99998764311 1234567799 9999886654444433
No 49
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.1e-13 Score=117.71 Aligned_cols=128 Identities=22% Similarity=0.288 Sum_probs=108.4
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE 106 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d 106 (216)
|.+.....+.|+..+...+...+++++||+.||.|.+++.++... .+|+|+|+++++++.|+.|++.|++.|++|+.++
T Consensus 271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ 349 (432)
T COG2265 271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGD 349 (432)
T ss_pred eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 455567888898888877777788899999999999999999774 4999999999999999999999999899999999
Q ss_pred cccccccccc-ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeCcch
Q psy17460 107 INEKSLDSSV-FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKTSTR 161 (216)
Q Consensus 107 ~~~~~~~~~~-~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~~~~ 161 (216)
+ .++.... ....+|+|+.||| +.+.+..+++........ +|+-+...+.
T Consensus 350 a--e~~~~~~~~~~~~d~VvvDPP----R~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 350 A--EEFTPAWWEGYKPDVVVVDPP----RAGADREVLKQLAKLKPKRIVYVSCNPATL 401 (432)
T ss_pred H--HHHhhhccccCCCCEEEECCC----CCCCCHHHHHHHHhcCCCcEEEEeCCHHHH
Confidence 9 6655432 2257899999999 899998999999888877 8877755443
No 50
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.53 E-value=7.3e-13 Score=104.75 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=75.9
Q ss_pred cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460 26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAI 103 (216)
Q Consensus 26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~ 103 (216)
+..+...+...++..+. ..++.+|||+|||+|.++..++.. +. .+|+++|+++++++.+++++...+..+++++
T Consensus 57 ~~~~~p~~~~~~~~~l~----~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~ 132 (212)
T PRK13942 57 QTISAIHMVAIMCELLD----LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVI 132 (212)
T ss_pred CEeCcHHHHHHHHHHcC----CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEE
Confidence 44455566666655553 347899999999999999888776 33 6999999999999999999998888789999
Q ss_pred EecccccccccccccCcccEEEEcCC
Q psy17460 104 LFEINEKSLDSSVFKQKVDTVIMNPP 129 (216)
Q Consensus 104 ~~d~~~~~~~~~~~~~~~D~vi~npp 129 (216)
.+|+ .+..... .+||+|+++..
T Consensus 133 ~gd~--~~~~~~~--~~fD~I~~~~~ 154 (212)
T PRK13942 133 VGDG--TLGYEEN--APYDRIYVTAA 154 (212)
T ss_pred ECCc--ccCCCcC--CCcCEEEECCC
Confidence 9999 6544332 68999998653
No 51
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.2e-13 Score=115.70 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=90.1
Q ss_pred cCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCC-----------------------------
Q psy17460 23 HLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGAD----------------------------- 73 (216)
Q Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~----------------------------- 73 (216)
.+.++..+..+.+.|+..+....++.++..++|+.||+|++++++|..+..
T Consensus 165 GyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea 244 (381)
T COG0116 165 GYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEA 244 (381)
T ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHH
Confidence 355566666688888877777767778889999999999999999887631
Q ss_pred -----------EEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 74 -----------FCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 74 -----------~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
.++|+|+|+.+++.|+.|+...|+. .|+|.++|+ ..+.... +.+|+|||||||+.+
T Consensus 245 ~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~--~~l~~~~--~~~gvvI~NPPYGeR 312 (381)
T COG0116 245 EERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA--TDLKEPL--EEYGVVISNPPYGER 312 (381)
T ss_pred HHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch--hhCCCCC--CcCCEEEeCCCcchh
Confidence 3779999999999999999999987 599999999 7665443 689999999999987
No 52
>PLN02244 tocopherol O-methyltransferase
Probab=99.52 E-value=5e-13 Score=112.88 Aligned_cols=100 Identities=9% Similarity=-0.112 Sum_probs=76.5
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.++.+|||+|||+|.++..+++....+|+|+|+++.+++.++.+....++. +++++.+|+ .+.++.. ++||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~--~~~~~~~--~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA--LNQPFED--GQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc--ccCCCCC--CCccEEEE
Confidence 467899999999999999988864459999999999999999998887765 799999999 7766543 79999999
Q ss_pred cCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460 127 NPPFGTR-NCGIDLAFVQYAADISKV 151 (216)
Q Consensus 127 npp~~~~-~~~~~~~~~~~~l~~~~~ 151 (216)
.-.+++. +.....+-+.+++++++.
T Consensus 193 ~~~~~h~~d~~~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 193 MESGEHMPDKRKFVQELARVAAPGGR 218 (340)
T ss_pred CCchhccCCHHHHHHHHHHHcCCCcE
Confidence 7776654 322222333344444444
No 53
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.52 E-value=2.5e-13 Score=118.58 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=90.8
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460 28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107 (216)
Q Consensus 28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 107 (216)
.......+.++..+...+...++.+|||+|||+|.+++.++..+ .+|+|+|+|+++++.|+.|+..+++++++++.+|+
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~ 354 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANL 354 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeCh
Confidence 33455667777777766555677899999999999999999886 59999999999999999999998887899999999
Q ss_pred cccccccc--cccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeC
Q psy17460 108 NEKSLDSS--VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKT 158 (216)
Q Consensus 108 ~~~~~~~~--~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~ 158 (216)
.+.... ...++||+|++|||+... . +.++...+.... +|..+..
T Consensus 355 --~~~l~~~~~~~~~fD~Vi~dPPr~g~----~-~~~~~l~~~~~~~ivyvSCnp 402 (443)
T PRK13168 355 --EEDFTDQPWALGGFDKVLLDPPRAGA----A-EVMQALAKLGPKRIVYVSCNP 402 (443)
T ss_pred --HHhhhhhhhhcCCCCEEEECcCCcCh----H-HHHHHHHhcCCCeEEEEEeCh
Confidence 543211 112579999999998643 1 233333333323 6766633
No 54
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=1.2e-13 Score=112.14 Aligned_cols=105 Identities=17% Similarity=0.111 Sum_probs=77.7
Q ss_pred HHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccc
Q psy17460 39 HTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVF 117 (216)
Q Consensus 39 ~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 117 (216)
..+...+...++.+|||+|||+|.++..++...+ .+|+|+|+|+.+++.++.. +++++.+|+ .+++..
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~--~~~~~~-- 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDV--RDWKPK-- 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcCh--hhCCCC--
Confidence 3344444445788999999999999999888743 6899999999999998753 578999999 665432
Q ss_pred cCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEE
Q psy17460 118 KQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSL 155 (216)
Q Consensus 118 ~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~ 155 (216)
++||+|+++..+++. +.....+-+.+++++++.+...
T Consensus 88 -~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 88 -PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred -CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 689999999999876 3333344455556666654443
No 55
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.2e-13 Score=112.90 Aligned_cols=96 Identities=25% Similarity=0.352 Sum_probs=70.4
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEe
Q psy17460 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN-CDAILF 105 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~ 105 (216)
|.|+.|-...+.-..+.. ...+|++|||+|||||.+++.+++.|+.+|+|+|+||-+++.++.|+..|+++. +..-..
T Consensus 141 FGTG~HpTT~lcL~~Le~-~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~ 219 (300)
T COG2264 141 FGTGTHPTTSLCLEALEK-LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219 (300)
T ss_pred cCCCCChhHHHHHHHHHH-hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence 555554444333222222 123899999999999999999999999999999999999999999999999853 333333
Q ss_pred cccccccccccccCcccEEEEcC
Q psy17460 106 EINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 106 d~~~~~~~~~~~~~~~D~vi~np 128 (216)
+. ...+.. ++||+|++|-
T Consensus 220 ~~--~~~~~~---~~~DvIVANI 237 (300)
T COG2264 220 LL--LEVPEN---GPFDVIVANI 237 (300)
T ss_pred cc--hhhccc---CcccEEEehh
Confidence 33 333322 5999999975
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.51 E-value=8.8e-13 Score=94.89 Aligned_cols=103 Identities=20% Similarity=0.229 Sum_probs=81.7
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.++.++...+.++++++.+|+ ...... ..++||.|++
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~D~v~~ 94 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA--PEALED-SLPEPDRVFI 94 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc--cccChh-hcCCCCEEEE
Confidence 3577999999999999999888743 79999999999999999999888877899999998 543211 1158999998
Q ss_pred cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460 127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE 182 (216)
Q Consensus 127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 182 (216)
..+.. ....+++.+.++|+| +|.+++.
T Consensus 95 ~~~~~----------------------------~~~~~l~~~~~~Lk~-gG~li~~ 121 (124)
T TIGR02469 95 GGSGG----------------------------LLQEILEAIWRRLRP-GGRIVLN 121 (124)
T ss_pred CCcch----------------------------hHHHHHHHHHHHcCC-CCEEEEE
Confidence 65422 123567778899999 9988874
No 57
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.51 E-value=2.6e-13 Score=124.28 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=88.7
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
++++|||+|||||.+++.++..|+.+|+++|+|+.+++.++.|+..+++. +++++.+|+ .++.... .++||+||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~--~~~l~~~-~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC--LAWLKEA-REQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH--HHHHHHc-CCCcCEEEE
Confidence 57899999999999999999988878999999999999999999999885 699999999 7654221 268999999
Q ss_pred cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460 127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY 185 (216)
Q Consensus 127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 185 (216)
||||....+.... ...+. .....++..+.++|+| +|.+++....
T Consensus 615 DPP~f~~~~~~~~--~~~~~------------~~y~~l~~~a~~lL~~-gG~l~~~~~~ 658 (702)
T PRK11783 615 DPPTFSNSKRMED--SFDVQ------------RDHVALIKDAKRLLRP-GGTLYFSNNK 658 (702)
T ss_pred CCCCCCCCCccch--hhhHH------------HHHHHHHHHHHHHcCC-CCEEEEEeCC
Confidence 9999755221100 00000 1233455666677777 7777665553
No 58
>KOG2904|consensus
Probab=99.51 E-value=3.7e-13 Score=107.17 Aligned_cols=148 Identities=14% Similarity=0.202 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEec
Q psy17460 29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFE 106 (216)
Q Consensus 29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d 106 (216)
.+++..+..+..+.+. .+.++..+||+|||+|++++.++.. +.+.|+++|.++.++.+|.+|++.+++. .+.+++.+
T Consensus 129 ETEE~V~~Vid~~~~~-~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~ 207 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNS-EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNI 207 (328)
T ss_pred cHHHHHHHHHHHHhhh-hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecc
Confidence 3445555555555543 3456668999999999999887775 4489999999999999999999999887 57776443
Q ss_pred ccc--cccccccccCcccEEEEcCCCCCCCCCCC----HHHHH--HHhhcCCceEEEeeCcchHHHHHHHHHhcCcccee
Q psy17460 107 INE--KSLDSSVFKQKVDTVIMNPPFGTRNCGID----LAFVQ--YAADISKVVYSLHKTSTRESILKKIQAFKNVEQVD 178 (216)
Q Consensus 107 ~~~--~~~~~~~~~~~~D~vi~npp~~~~~~~~~----~~~~~--~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~ 178 (216)
.+. .+ +.....++.|+++|||||...+.-.+ .+.++ .|+..+.. .......+...+.+.|+| +|+
T Consensus 208 me~d~~~-~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~e-----G~~~~~~~~~~a~R~Lq~-gg~ 280 (328)
T KOG2904|consen 208 MESDASD-EHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLE-----GYDNLVHYWLLATRMLQP-GGF 280 (328)
T ss_pred ccccccc-ccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccc-----hhHHHHHHHHhhHhhccc-CCe
Confidence 310 22 22223378999999999987622111 11111 12222211 011234566678999999 999
Q ss_pred eeeeee
Q psy17460 179 VIAEMK 184 (216)
Q Consensus 179 ~~~~~~ 184 (216)
+.++.+
T Consensus 281 ~~le~~ 286 (328)
T KOG2904|consen 281 EQLELV 286 (328)
T ss_pred EEEEec
Confidence 999887
No 59
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.50 E-value=1.9e-13 Score=111.19 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=84.5
Q ss_pred CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460 19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI 97 (216)
Q Consensus 19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~ 97 (216)
.++..++| |-....+.+.++..+.. .++++|||+|||+|.++..+++.+ .+|+++|+|+.+++.++.++.. .
T Consensus 2 ~~~k~~GQnfl~d~~~~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~ 74 (258)
T PRK14896 2 RMNKKLGQHFLIDDRVVDRIVEYAED----TDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A 74 (258)
T ss_pred CCCCcCCccccCCHHHHHHHHHhcCC----CCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C
Confidence 46778888 66788888888876643 378899999999999999999985 4899999999999999988754 3
Q ss_pred CceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 98 TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 98 ~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
++++++.+|+ .+.+. ..||.|++|+||...
T Consensus 75 ~~v~ii~~D~--~~~~~----~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 75 GNVEIIEGDA--LKVDL----PEFNKVVSNLPYQIS 104 (258)
T ss_pred CCEEEEEecc--ccCCc----hhceEEEEcCCcccC
Confidence 3899999999 76654 358999999999753
No 60
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=6e-13 Score=107.79 Aligned_cols=110 Identities=18% Similarity=0.092 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460 32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS 111 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 111 (216)
.+...+...+...++..++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++.+.. ...++.+|+ ..
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~--~~ 96 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA-----ADHYLAGDI--ES 96 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC-----CCCEEEcCc--cc
Confidence 3444455555554444467799999999999998888776 489999999999999988753 356889999 66
Q ss_pred cccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460 112 LDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKV 151 (216)
Q Consensus 112 ~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ 151 (216)
.+... ++||+|+++.++++. +......-+.+++++++.
T Consensus 97 ~~~~~--~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~ 135 (251)
T PRK10258 97 LPLAT--ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGV 135 (251)
T ss_pred CcCCC--CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeE
Confidence 55443 689999999988765 322233344455555555
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.50 E-value=8.4e-13 Score=107.41 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=113.4
Q ss_pred hHHHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCCh
Q psy17460 3 LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDK 82 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~ 82 (216)
++++++.++++..|.+.|-.-++.+..++.-...-.+.+...+....|++|||+|||.|..+..++..|+..|+|+|.++
T Consensus 69 ~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~ 148 (315)
T PF08003_consen 69 RQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP 148 (315)
T ss_pred HHHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh
Confidence 57899999999899999999999999999888888888888877889999999999999999999999999999999998
Q ss_pred HHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcch
Q psy17460 83 EILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTR 161 (216)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~ 161 (216)
-..-..+-.-...+.+ .+..+..-+ .+++. . +.||+|||=-- +| ...++
T Consensus 149 lf~~QF~~i~~~lg~~~~~~~lplgv--E~Lp~-~--~~FDtVF~MGV----------------------LY---Hrr~P 198 (315)
T PF08003_consen 149 LFYLQFEAIKHFLGQDPPVFELPLGV--EDLPN-L--GAFDTVFSMGV----------------------LY---HRRSP 198 (315)
T ss_pred HHHHHHHHHHHHhCCCccEEEcCcch--hhccc-c--CCcCEEEEeee----------------------hh---ccCCH
Confidence 7765544333333332 234443445 44554 2 79999998322 22 12244
Q ss_pred HHHHHHHHHhcCccceeeeeeeec
Q psy17460 162 ESILKKIQAFKNVEQVDVIAEMKY 185 (216)
Q Consensus 162 ~~~~~~~~~~l~~~~g~~~~~~~~ 185 (216)
-..+...++.|++ +|.+++|.-.
T Consensus 199 l~~L~~Lk~~L~~-gGeLvLETlv 221 (315)
T PF08003_consen 199 LDHLKQLKDSLRP-GGELVLETLV 221 (315)
T ss_pred HHHHHHHHHhhCC-CCEEEEEEee
Confidence 5566666777777 7777776653
No 62
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.50 E-value=1.5e-13 Score=113.06 Aligned_cols=93 Identities=28% Similarity=0.395 Sum_probs=69.5
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEe
Q psy17460 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN-CDAILF 105 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~ 105 (216)
|.|+.|-..++.-.++... ..++++|||+|||||.+++.+++.|+.+|+|+|+||.+++.|+.|+..|++.. +.+ .
T Consensus 140 FGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~ 216 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--S 216 (295)
T ss_dssp S-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--S
T ss_pred ccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--E
Confidence 7777776665554444332 34788999999999999999999999999999999999999999999999863 433 2
Q ss_pred cccccccccccccCcccEEEEcC
Q psy17460 106 EINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 106 d~~~~~~~~~~~~~~~D~vi~np 128 (216)
.. .+.+. .+||+|++|-
T Consensus 217 ~~--~~~~~----~~~dlvvANI 233 (295)
T PF06325_consen 217 LS--EDLVE----GKFDLVVANI 233 (295)
T ss_dssp CT--SCTCC----S-EEEEEEES
T ss_pred Ee--ccccc----ccCCEEEECC
Confidence 23 33332 7999999986
No 63
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.50 E-value=2.9e-13 Score=110.97 Aligned_cols=104 Identities=24% Similarity=0.269 Sum_probs=84.7
Q ss_pred CCCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC
Q psy17460 18 SNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE 96 (216)
Q Consensus 18 ~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~ 96 (216)
..++..++| |.+...+.+.++..+.. .++.+|||+|||+|.++..++..++ +|+|+|+|+++++.++.++..
T Consensus 14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~----~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-- 86 (272)
T PRK00274 14 HRAKKSLGQNFLIDENILDKIVDAAGP----QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-- 86 (272)
T ss_pred CCCCcccCcCcCCCHHHHHHHHHhcCC----CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--
Confidence 377888998 77788888777776543 4778999999999999999999876 999999999999999987743
Q ss_pred CCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 97 ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 97 ~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
++++++.+|+ .+++... -.+|.|++||||...
T Consensus 87 -~~v~~i~~D~--~~~~~~~--~~~~~vv~NlPY~is 118 (272)
T PRK00274 87 -DNLTIIEGDA--LKVDLSE--LQPLKVVANLPYNIT 118 (272)
T ss_pred -CceEEEEChh--hcCCHHH--cCcceEEEeCCccch
Confidence 3899999999 6665431 126999999999754
No 64
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.49 E-value=7.1e-13 Score=115.42 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460 30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE 109 (216)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 109 (216)
.....+.++..+...+...++.+|||+|||+|.+++.++... .+|+|+|+++.+++.|+.|+..+++++++++.+|+
T Consensus 273 N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~-- 349 (431)
T TIGR00479 273 NSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTL-- 349 (431)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCH--
Confidence 345556666666655444567899999999999999998875 48999999999999999999999988999999999
Q ss_pred cccccc--cccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc--eEEEeeC
Q psy17460 110 KSLDSS--VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV--VYSLHKT 158 (216)
Q Consensus 110 ~~~~~~--~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~--ly~~~~~ 158 (216)
.+.... ....+||+|++|||.. +.+...++........ +|..+..
T Consensus 350 ~~~l~~~~~~~~~~D~vi~dPPr~----G~~~~~l~~l~~l~~~~ivyvsc~p 398 (431)
T TIGR00479 350 ETVLPKQPWAGQIPDVLLLDPPRK----GCAAEVLRTIIELKPERIVYVSCNP 398 (431)
T ss_pred HHHHHHHHhcCCCCCEEEECcCCC----CCCHHHHHHHHhcCCCEEEEEcCCH
Confidence 553211 1125799999999953 4455566554443333 6665543
No 65
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.49 E-value=2.4e-13 Score=103.82 Aligned_cols=78 Identities=23% Similarity=0.218 Sum_probs=67.0
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.+++++... ++++++.+|+ .+++... ..||.|++|
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~--~~~~~~~--~~~d~vi~n 84 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDA--LKFDLPK--LQPYKVVGN 84 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC--CCEEEEECch--hcCCccc--cCCCEEEEC
Confidence 467899999999999999999884 59999999999999999988642 3799999999 7766542 469999999
Q ss_pred CCCCC
Q psy17460 128 PPFGT 132 (216)
Q Consensus 128 pp~~~ 132 (216)
|||+.
T Consensus 85 ~Py~~ 89 (169)
T smart00650 85 LPYNI 89 (169)
T ss_pred CCccc
Confidence 99974
No 66
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.48 E-value=7.2e-13 Score=99.60 Aligned_cols=130 Identities=22% Similarity=0.210 Sum_probs=79.9
Q ss_pred CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCc-ccEEEEcC
Q psy17460 51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQK-VDTVIMNP 128 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~-~D~vi~np 128 (216)
..|+|++||.|..++.+|+... +|+++|+|+..++.|+.|++..|+. +++++.+|+ .+......... +|+||++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~--~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDF--FELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H--HHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH--HHHHhhccccccccEEEECC
Confidence 3699999999999999999954 8999999999999999999999976 899999999 77654432122 89999999
Q ss_pred CCCCC-CC---CC----------CHHHHHHHhhcCCc-eEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 129 PFGTR-NC---GI----------DLAFVQYAADISKV-VYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 129 p~~~~-~~---~~----------~~~~~~~~l~~~~~-ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
|++-. .. .- -.+.++.+.....+ ++.+-...+...+.+...++..+ +..+-++..
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~dl~ql~~~~~~l~~~-~~~~~v~~~ 147 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNSDLNQLSQLTRELFGP-SKKCEVEQN 147 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB-HHHHHHT----T-T-TEEEEEEEE
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHhccccCC-CCeEEEEEe
Confidence 99975 11 11 12344555555555 33344444566666555555455 555554443
No 67
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=7.1e-13 Score=107.76 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=74.9
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
...++.+|||+|||+|.++..++...+ .+|+|+|+++.+++.++.+.. +++++.+|+ .++... ++||+|
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~--~~~~~~---~~fD~v 97 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----DCQFVEADI--ASWQPP---QALDLI 97 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----CCeEEECch--hccCCC---CCccEE
Confidence 445788999999999999988887643 799999999999999988753 688999999 665433 699999
Q ss_pred EEcCCCCCC-CCCCCHHHHHHHhhcCCceEE
Q psy17460 125 IMNPPFGTR-NCGIDLAFVQYAADISKVVYS 154 (216)
Q Consensus 125 i~npp~~~~-~~~~~~~~~~~~l~~~~~ly~ 154 (216)
+++..+++. +.....+-+.+++++++.+..
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 999999876 332333344455555554333
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.47 E-value=1.1e-12 Score=108.38 Aligned_cols=96 Identities=23% Similarity=0.368 Sum_probs=70.9
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEe
Q psy17460 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILF 105 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~ 105 (216)
|.|..+....+....... ...++++|||+|||+|.+++.+++.|+.+|+|+|+|+.+++.++.|+..+++. ++.+..+
T Consensus 138 FgtG~h~tt~l~l~~l~~-~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~ 216 (288)
T TIGR00406 138 FGTGTHPTTSLCLEWLED-LDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI 216 (288)
T ss_pred ccCCCCHHHHHHHHHHHh-hcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec
Confidence 445444444433222222 12367899999999999999988888789999999999999999999988875 4667766
Q ss_pred cccccccccccccCcccEEEEcCC
Q psy17460 106 EINEKSLDSSVFKQKVDTVIMNPP 129 (216)
Q Consensus 106 d~~~~~~~~~~~~~~~D~vi~npp 129 (216)
+. .... . ++||+|++|..
T Consensus 217 ~~--~~~~-~---~~fDlVvan~~ 234 (288)
T TIGR00406 217 YL--EQPI-E---GKADVIVANIL 234 (288)
T ss_pred cc--cccc-C---CCceEEEEecC
Confidence 65 3332 1 68999999864
No 69
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.47 E-value=4.4e-13 Score=110.69 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=85.5
Q ss_pred CCcccCcccc-CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC-
Q psy17460 19 NPKVHLEQYH-TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE- 96 (216)
Q Consensus 19 ~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~- 96 (216)
.++..++|.. ....+...++..+.. .++.+|||+|||+|.++..++..+ .+|+++|+|+++++.+++++...+
T Consensus 9 ~~kk~~GQnFL~d~~i~~~Iv~~~~~----~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~ 83 (294)
T PTZ00338 9 VFNKKFGQHILKNPLVLDKIVEKAAI----KPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPL 83 (294)
T ss_pred CcCCCCCccccCCHHHHHHHHHhcCC----CCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCC
Confidence 6788899844 566777777765543 478899999999999999988875 489999999999999999987665
Q ss_pred CCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 97 ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 97 ~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
..+++++.+|+ .+... ..||.|++|+||...
T Consensus 84 ~~~v~ii~~Da--l~~~~----~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 84 ASKLEVIEGDA--LKTEF----PYFDVCVANVPYQIS 114 (294)
T ss_pred CCcEEEEECCH--hhhcc----cccCEEEecCCcccC
Confidence 33799999999 66553 478999999999865
No 70
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.47 E-value=2.1e-12 Score=105.26 Aligned_cols=103 Identities=20% Similarity=0.119 Sum_probs=77.7
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhH---hCCCceEEEEecccccccccccccCccc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNE---FEITNCDAILFEINEKSLDSSVFKQKVD 122 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~~D 122 (216)
.++.+|||+|||||.++..++.. ++ .+|+|+|+|++|++.|+++... ...++++++.+|+ .++++.. ++||
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~--~~lp~~~--~sfD 147 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA--TDLPFDD--CYFD 147 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc--ccCCCCC--CCEe
Confidence 46889999999999999888875 44 6999999999999999877542 1233799999999 7776653 7899
Q ss_pred EEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEE
Q psy17460 123 TVIMNPPFGTR-NCGIDLAFVQYAADISKVVYS 154 (216)
Q Consensus 123 ~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~ 154 (216)
+|+++-.+++. +.....+-+.+++++++.+.+
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 180 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSI 180 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEE
Confidence 99998777765 333344555666666666333
No 71
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.47 E-value=1e-12 Score=107.48 Aligned_cols=109 Identities=18% Similarity=0.268 Sum_probs=74.6
Q ss_pred cCCCcccCc--cccCCH----HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHH
Q psy17460 17 FSNPKVHLE--QYHTPP----HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFI 89 (216)
Q Consensus 17 ~~~~~~~~~--~~~t~~----~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~ 89 (216)
+..+...+. -|.++. +....++..+...+...+|.+|||+|||.|.++..+++. |. +|+|+.+|+++.+.++
T Consensus 24 ~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~ 102 (273)
T PF02353_consen 24 FLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYAR 102 (273)
T ss_dssp TS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred hcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHH
Confidence 344444433 345443 344566777777777789999999999999999999988 65 9999999999999999
Q ss_pred HhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 90 DNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 90 ~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
+.+...++. .+++..+|. .+++ .+||.|++--.+.+.
T Consensus 103 ~~~~~~gl~~~v~v~~~D~--~~~~-----~~fD~IvSi~~~Ehv 140 (273)
T PF02353_consen 103 ERIREAGLEDRVEVRLQDY--RDLP-----GKFDRIVSIEMFEHV 140 (273)
T ss_dssp HHHHCSTSSSTEEEEES-G--GG--------S-SEEEEESEGGGT
T ss_pred HHHHhcCCCCceEEEEeec--cccC-----CCCCEEEEEechhhc
Confidence 999999987 699999999 7665 599999987666544
No 72
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.47 E-value=4.2e-12 Score=100.38 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460 29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN 108 (216)
Q Consensus 29 t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 108 (216)
+...+...++..+ ...++.+|||+|||+|..+..++... .+++++|+++++++.+++++...++.+++++.+|+
T Consensus 62 ~~p~~~~~l~~~l----~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~- 135 (212)
T PRK00312 62 SQPYMVARMTELL----ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG- 135 (212)
T ss_pred CcHHHHHHHHHhc----CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc-
Confidence 4445555554433 33578899999999999998777764 48999999999999999999988887899999998
Q ss_pred ccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 109 EKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 109 ~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
.+..... ++||+|+++.++.. +.+...+.|++ +|.+++..+
T Consensus 136 -~~~~~~~--~~fD~I~~~~~~~~-------------------------------~~~~l~~~L~~-gG~lv~~~~ 176 (212)
T PRK00312 136 -WKGWPAY--APFDRILVTAAAPE-------------------------------IPRALLEQLKE-GGILVAPVG 176 (212)
T ss_pred -ccCCCcC--CCcCEEEEccCchh-------------------------------hhHHHHHhcCC-CcEEEEEEc
Confidence 5532222 68999999876431 11224567789 999888766
No 73
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.46 E-value=2.8e-13 Score=113.07 Aligned_cols=109 Identities=27% Similarity=0.384 Sum_probs=79.0
Q ss_pred CCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc--------CCCEEEEEeCChHHHHHHHH
Q psy17460 19 NPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL--------GADFCFALECDKEILDIFID 90 (216)
Q Consensus 19 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~--------~~~~v~~iD~~~~~~~~~~~ 90 (216)
..+...++|.||.+++..|+.++.. .++.+|+|++||+|.+...+... ...+++|+|+++.++..|+.
T Consensus 20 ~~~k~~G~~~TP~~i~~l~~~~~~~----~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~ 95 (311)
T PF02384_consen 20 ESRKKLGQFYTPREIVDLMVKLLNP----KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKL 95 (311)
T ss_dssp CTTTSCGGC---HHHHHHHHHHHTT-----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHH
T ss_pred HhccccceeehHHHHHHHHHhhhhc----cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHh
Confidence 4567789999999999999998854 36779999999999998887762 34799999999999999999
Q ss_pred hhhHhCCC--ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 91 NKNEFEIT--NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 91 ~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
|+...+.. +..+..+|. +..+.......||+|++||||+..
T Consensus 96 nl~l~~~~~~~~~i~~~d~--l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 96 NLLLHGIDNSNINIIQGDS--LENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HHHHTTHHCBGCEEEES-T--TTSHSCTST--EEEEEEE--CTCE
T ss_pred hhhhhcccccccccccccc--ccccccccccccccccCCCCcccc
Confidence 88766653 356999998 665543223689999999999975
No 74
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=7e-13 Score=115.24 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
...+|.+|||+|||+|..+..++.... ..|+++|+++.+++.++.|+..+++ +++++.+|+ .+.......++||.|
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~--~~~~~~~~~~~fD~V 317 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDA--RDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCc--ccchhhcccCCCCEE
Confidence 335788999999999999999888754 6999999999999999999999888 578999999 654321112689999
Q ss_pred EEcCCCCC
Q psy17460 125 IMNPPFGT 132 (216)
Q Consensus 125 i~npp~~~ 132 (216)
++|||+..
T Consensus 318 l~D~Pcs~ 325 (427)
T PRK10901 318 LLDAPCSA 325 (427)
T ss_pred EECCCCCc
Confidence 99999864
No 75
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.46 E-value=4.9e-13 Score=105.19 Aligned_cols=77 Identities=26% Similarity=0.342 Sum_probs=67.4
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.+|.+|||+|||-|.++..+|+.|+ .|+|+|+++.+++.|+..+...++ +++..+.++ .++.... ++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~--edl~~~~--~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATV--EDLASAG--GQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhH--HHHHhcC--CCccEEEEh
Confidence 5899999999999999999999996 999999999999999999999998 688999998 5555433 799999995
Q ss_pred CCC
Q psy17460 128 PPF 130 (216)
Q Consensus 128 pp~ 130 (216)
-..
T Consensus 132 EVl 134 (243)
T COG2227 132 EVL 134 (243)
T ss_pred hHH
Confidence 443
No 76
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=8.7e-13 Score=107.20 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=77.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
++.+|||+|||+|.++..++..+. +|+|+|+++++++.|+.+....++. +++++.+|+ .++... ..++||+|+++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~--~~l~~~-~~~~fD~V~~~ 119 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA--QDIAQH-LETPVDLILFH 119 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH--HHHhhh-cCCCCCEEEeh
Confidence 567999999999999999999865 8999999999999999999887764 799999999 555321 12689999998
Q ss_pred CCCCCC-CCCCCHHHHHHHhhcCCceEEE
Q psy17460 128 PPFGTR-NCGIDLAFVQYAADISKVVYSL 155 (216)
Q Consensus 128 pp~~~~-~~~~~~~~~~~~l~~~~~ly~~ 155 (216)
..+++. ++....+.+.+.+++++.+...
T Consensus 120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 120 AVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 887655 3322334444555555554333
No 77
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.45 E-value=9.4e-13 Score=107.50 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=70.3
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
..+|.+|||+|||+|..+..++... .+.|+++|+++.+++.+++|++.+++.+++++.+|+ ..+.... +.||.|
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~--~~~~~~~--~~fD~V 144 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG--RVFGAAV--PKFDAI 144 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH--HHhhhhc--cCCCEE
Confidence 3578899999999999998877752 268999999999999999999999987899999999 6554322 579999
Q ss_pred EEcCCCCCC
Q psy17460 125 IMNPPFGTR 133 (216)
Q Consensus 125 i~npp~~~~ 133 (216)
++|||+...
T Consensus 145 l~D~Pcsg~ 153 (264)
T TIGR00446 145 LLDAPCSGE 153 (264)
T ss_pred EEcCCCCCC
Confidence 999998754
No 78
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.45 E-value=5.6e-13 Score=91.20 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=75.6
Q ss_pred EEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 54 LDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 54 lD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
||+|||+|..+..+++.+..+++++|+++++++.++++....+ +.++.+|+ .++++.. ++||+|+++-.+++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~--~~l~~~~--~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDA--EDLPFPD--NSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBT--TSSSS-T--T-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC---chheeehH--HhCcccc--ccccccccccceeec
Confidence 7999999999999999855799999999999999999886533 56999999 7777654 899999997766532
Q ss_pred CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460 134 NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA 181 (216)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 181 (216)
.....+++.+.++|+| +|++++
T Consensus 74 -------------------------~~~~~~l~e~~rvLk~-gG~l~~ 95 (95)
T PF08241_consen 74 -------------------------EDPEAALREIYRVLKP-GGRLVI 95 (95)
T ss_dssp -------------------------SHHHHHHHHHHHHEEE-EEEEEE
T ss_pred -------------------------cCHHHHHHHHHHHcCc-CeEEeC
Confidence 3456788889999999 998864
No 79
>KOG1271|consensus
Probab=99.45 E-value=1.2e-11 Score=93.15 Aligned_cols=183 Identities=14% Similarity=0.166 Sum_probs=120.5
Q ss_pred HHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcC---CCCCC-EEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHH
Q psy17460 11 QQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYN---DIDGK-TVLDLGCGSGILTFGSILLGA-DFCFALECDKEIL 85 (216)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---~~~~~-~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~ 85 (216)
.++ .+|+++--.=+.|.. +...+++++++..... ..+.. +|||+|||.|.+...+++.+. ..++|+|-++.++
T Consensus 27 ~El-~Nfr~hgd~GEvWFg-~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV 104 (227)
T KOG1271|consen 27 LEL-TNFREHGDEGEVWFG-EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV 104 (227)
T ss_pred HHH-hhcccCCCccceecC-CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHH
Confidence 455 666755444444443 5566667766665433 12333 999999999999999999876 6699999999999
Q ss_pred HHHHHhhhHhCCCc-eEEEEecccccccccccccCcccEEEEcCCCCCC---------CCCCCHHHHHHHhhcCCceEEE
Q psy17460 86 DIFIDNKNEFEITN-CDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR---------NCGIDLAFVQYAADISKVVYSL 155 (216)
Q Consensus 86 ~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~---------~~~~~~~~~~~~l~~~~~ly~~ 155 (216)
++|+..++..+.++ |+|.+.|+ ....+.. ++||+|.-.-.|..+ +....+..+++.+.+++ ++.+
T Consensus 105 ~LA~niAe~~~~~n~I~f~q~DI--~~~~~~~--~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~g-ifvI 179 (227)
T KOG1271|consen 105 ELAQNIAERDGFSNEIRFQQLDI--TDPDFLS--GQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGG-IFVI 179 (227)
T ss_pred HHHHHHHHhcCCCcceeEEEeec--cCCcccc--cceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCc-EEEE
Confidence 99999999999885 99999999 6643322 577777643333222 22334455666666555 7777
Q ss_pred eeCc-chHHHHHHHHHhcCccceeeeeeeecCCCccccccccccceEEEEEEE
Q psy17460 156 HKTS-TRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLLR 207 (216)
Q Consensus 156 ~~~~-~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 207 (216)
.+++ +..++.+.+... +-.++...+.+ .|.|-.+...++....++
T Consensus 180 tSCN~T~dELv~~f~~~----~f~~~~tvp~p---tF~FgG~~G~tvt~vaF~ 225 (227)
T KOG1271|consen 180 TSCNFTKDELVEEFENF----NFEYLSTVPTP---TFMFGGSVGSTVTSVAFL 225 (227)
T ss_pred EecCccHHHHHHHHhcC----CeEEEEeeccc---eEEeccccccEEEEEEEe
Confidence 7776 677776555543 32333333332 777877776666655543
No 80
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.2e-12 Score=99.21 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=101.8
Q ss_pred cCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEE
Q psy17460 23 HLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDA 102 (216)
Q Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~ 102 (216)
..+|+.+..++...|+..+.. .++++|||+|||+|..+..+++... +|+++|+.+...+.|++|+...+..|+.+
T Consensus 50 ~~gqtis~P~~vA~m~~~L~~----~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v 124 (209)
T COG2518 50 GCGQTISAPHMVARMLQLLEL----KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTV 124 (209)
T ss_pred CCCceecCcHHHHHHHHHhCC----CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEE
Confidence 356677777777777777655 5899999999999999999998854 99999999999999999999999989999
Q ss_pred EEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460 103 ILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE 182 (216)
Q Consensus 103 ~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 182 (216)
+++|. ..-.... .+||.|++....... -+...+.|++ +|++++-
T Consensus 125 ~~gDG--~~G~~~~--aPyD~I~Vtaaa~~v-------------------------------P~~Ll~QL~~-gGrlv~P 168 (209)
T COG2518 125 RHGDG--SKGWPEE--APYDRIIVTAAAPEV-------------------------------PEALLDQLKP-GGRLVIP 168 (209)
T ss_pred EECCc--ccCCCCC--CCcCEEEEeeccCCC-------------------------------CHHHHHhccc-CCEEEEE
Confidence 99999 5543332 799999986543211 1123556688 9999998
Q ss_pred eecCCCccc-ccccc
Q psy17460 183 MKYDLNQSY-KFHKK 196 (216)
Q Consensus 183 ~~~~~~~~~-~~~~~ 196 (216)
.+....+.+ .+.+.
T Consensus 169 vG~~~~q~l~~~~k~ 183 (209)
T COG2518 169 VGSGPAQRLLRITKD 183 (209)
T ss_pred EccCCcEEEEEEEEc
Confidence 885555544 44443
No 81
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=2.8e-12 Score=104.06 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccc
Q psy17460 32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEK 110 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~ 110 (216)
+.....+..+...+...+|++|||+|||.|.+++.+++....+|+|+++|+++.+.+++.+...|++ +++++..|. .
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~--r 132 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY--R 132 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc--c
Confidence 3334445566666677899999999999999999999885569999999999999999999999998 899999999 6
Q ss_pred ccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhc
Q psy17460 111 SLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADI 148 (216)
Q Consensus 111 ~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~ 148 (216)
++. ++||.|++--.|.+.....-..|++.+...
T Consensus 133 d~~-----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~ 165 (283)
T COG2230 133 DFE-----EPFDRIVSVGMFEHVGKENYDDFFKKVYAL 165 (283)
T ss_pred ccc-----cccceeeehhhHHHhCcccHHHHHHHHHhh
Confidence 665 679999998888776333333444444333
No 82
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.44 E-value=2e-12 Score=109.65 Aligned_cols=126 Identities=20% Similarity=0.294 Sum_probs=86.9
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460 28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107 (216)
Q Consensus 28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 107 (216)
.......+.|+..+...+...++ .|||+.||+|.+++.++... .+|+|||+++++++.|+.|+..++++|++|+.+++
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 33446778888888877665555 79999999999999999885 49999999999999999999999999999999988
Q ss_pred ccccccc------------ccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCc
Q psy17460 108 NEKSLDS------------SVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTS 159 (216)
Q Consensus 108 ~~~~~~~------------~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~ 159 (216)
++..... ......+|+|+.||| +.+.+...++.+..+.+.+|.-+.+.
T Consensus 254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP----R~G~~~~~~~~~~~~~~ivYvSCnP~ 313 (352)
T PF05958_consen 254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP----RAGLDEKVIELIKKLKRIVYVSCNPA 313 (352)
T ss_dssp HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE-------TT-SCHHHHHHHHHSSEEEEEES-HH
T ss_pred cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC----CCCchHHHHHHHhcCCeEEEEECCHH
Confidence 3321100 011136899999999 88888878887766543388777443
No 83
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=105.54 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=66.5
Q ss_pred CCCEEEEecCCCCHhHHHHhHc--C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILL--G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~--~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
++.+|||+|||+|..+..+++. . ..+++|+|+|++|++.|+.++...+.. +++++.+|+ .+.+. ..+|+|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~--~~~~~----~~~D~v 129 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI--RDIAI----ENASMV 129 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh--hhCCC----CCCCEE
Confidence 6779999999999999887762 2 369999999999999999999877765 799999999 77654 468999
Q ss_pred EEcCCCCCC
Q psy17460 125 IMNPPFGTR 133 (216)
Q Consensus 125 i~npp~~~~ 133 (216)
+++..++..
T Consensus 130 v~~~~l~~l 138 (247)
T PRK15451 130 VLNFTLQFL 138 (247)
T ss_pred ehhhHHHhC
Confidence 998877654
No 84
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=1.1e-12 Score=114.51 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=69.8
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI 125 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi 125 (216)
.++++|||+|||+|..+..++... .++|+++|+++++++.+++|+..+++.+++++.+|+ .+...... ++||+|+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~--~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA--RKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc--ccccchhc-ccCCEEE
Confidence 478899999999999999888752 479999999999999999999999987899999999 66532211 6899999
Q ss_pred EcCCCCC
Q psy17460 126 MNPPFGT 132 (216)
Q Consensus 126 ~npp~~~ 132 (216)
+|||+..
T Consensus 326 ~D~Pcsg 332 (444)
T PRK14902 326 VDAPCSG 332 (444)
T ss_pred EcCCCCC
Confidence 9999764
No 85
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.44 E-value=1e-12 Score=109.71 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=75.4
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.++.+|||+|||+|.++..+++.+. +|+|+|+++++++.|+.+....+.. +++++.+|+ .+++... ++||+|+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da--e~l~~~~--~~FD~Vi~ 204 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA--EKLADEG--RKFDAVLS 204 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH--HHhhhcc--CCCCEEEE
Confidence 4677999999999999998888765 8999999999999999887655432 799999999 6665432 68999999
Q ss_pred cCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460 127 NPPFGTR-NCGIDLAFVQYAADISKV 151 (216)
Q Consensus 127 npp~~~~-~~~~~~~~~~~~l~~~~~ 151 (216)
.-.+++. +...-.+.+.+.+++++.
T Consensus 205 ~~vLeHv~d~~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 205 LEVIEHVANPAEFCKSLSALTIPNGA 230 (322)
T ss_pred hhHHHhcCCHHHHHHHHHHHcCCCcE
Confidence 7766655 333334444555555554
No 86
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.43 E-value=5.2e-13 Score=104.82 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=65.8
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc-cccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI-NEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~~D~vi~ 126 (216)
++.+|||+|||+|..+..++...+ .+|+|+|+++++++.++.++..+++++++++.+|+ +....... .++||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~--~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP--DGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC--ccccceEEE
Confidence 567999999999999999887654 68999999999999999999888877899999999 32221121 268999999
Q ss_pred cCCCC
Q psy17460 127 NPPFG 131 (216)
Q Consensus 127 npp~~ 131 (216)
+.|..
T Consensus 118 ~~~~p 122 (202)
T PRK00121 118 NFPDP 122 (202)
T ss_pred ECCCC
Confidence 86543
No 87
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.43 E-value=4.6e-12 Score=99.16 Aligned_cols=94 Identities=24% Similarity=0.420 Sum_probs=72.4
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCC-CceEEEE
Q psy17460 28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEI-TNCDAIL 104 (216)
Q Consensus 28 ~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~ 104 (216)
.|.++++...+..+ ...++.+|||+|||+|.+++.+++. ++ .+|+++|+++.+++.+++|+..+++ ++++++.
T Consensus 23 ~t~~~~r~~~l~~l----~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~ 98 (198)
T PRK00377 23 MTKEEIRALALSKL----RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK 98 (198)
T ss_pred CCHHHHHHHHHHHc----CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 45556654444433 4457889999999999999998764 33 6999999999999999999998884 4899999
Q ss_pred ecccccccccccccCcccEEEEcC
Q psy17460 105 FEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 105 ~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
+|+ .+..... .+.||+|+++.
T Consensus 99 ~d~--~~~l~~~-~~~~D~V~~~~ 119 (198)
T PRK00377 99 GEA--PEILFTI-NEKFDRIFIGG 119 (198)
T ss_pred ech--hhhHhhc-CCCCCEEEECC
Confidence 999 6543221 15899999965
No 88
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=110.13 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=74.8
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEeccccccccccc--ccCcccEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSV--FKQKVDTV 124 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~--~~~~~D~v 124 (216)
.|++|||++|-||.+++.++..|+.+|++||+|..+++.|++|+..|++. .+.++++|+ .++.... .+.+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dv--f~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDV--FKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhH--HHHHHHHHhcCCcccEE
Confidence 58999999999999999999999999999999999999999999999986 589999999 9886542 33589999
Q ss_pred EEcCCCCCC
Q psy17460 125 IMNPPFGTR 133 (216)
Q Consensus 125 i~npp~~~~ 133 (216)
|+|||=...
T Consensus 295 ilDPPsF~r 303 (393)
T COG1092 295 ILDPPSFAR 303 (393)
T ss_pred EECCccccc
Confidence 999997665
No 89
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.43 E-value=3.7e-12 Score=108.37 Aligned_cols=131 Identities=16% Similarity=0.247 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460 30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE 109 (216)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 109 (216)
.....+.+++.+...+.. .+.+|||++||+|.+++.++.. +.+|+|+|+++.+++.+++|+..+++++++++.+|+
T Consensus 188 N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~-- 263 (362)
T PRK05031 188 NAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA-- 263 (362)
T ss_pred CHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH--
Confidence 445678888887765432 2357999999999999988776 459999999999999999999999988899999999
Q ss_pred cccccccc--------------cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460 110 KSLDSSVF--------------KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF 171 (216)
Q Consensus 110 ~~~~~~~~--------------~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~ 171 (216)
.+...... ..+||+||.|||+ .+...+.+....++.+.+|.-+.. ..+.+....+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR----~G~~~~~l~~l~~~~~ivyvSC~p---~tlarDl~~L 332 (362)
T PRK05031 264 EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR----AGLDDETLKLVQAYERILYISCNP---ETLCENLETL 332 (362)
T ss_pred HHHHHHHhhcccccccccccccCCCCCEEEECCCC----CCCcHHHHHHHHccCCEEEEEeCH---HHHHHHHHHH
Confidence 55431110 1258999999995 455666666666643337766644 3444434433
No 90
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=3e-12 Score=105.75 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=67.0
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.+++++...++ ++++..+|+ ...... ++||+|+++.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~--~~~~~~---~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDI--NSASIQ---EEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEech--hccccc---CCccEEEEcc
Confidence 455999999999999999999875 899999999999999999988888 899999999 554432 7999999988
Q ss_pred CCCCC
Q psy17460 129 PFGTR 133 (216)
Q Consensus 129 p~~~~ 133 (216)
.++..
T Consensus 193 vl~~l 197 (287)
T PRK12335 193 VLMFL 197 (287)
T ss_pred hhhhC
Confidence 76643
No 91
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=3.8e-12 Score=111.20 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=69.9
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
..+|++|||+|||+|..+..++... ..+|+++|+++.+++.++.+++..++++++++.+|+ ..+... ++||+|
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da--~~~~~~---~~fD~V 322 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA--RSFSPE---EQPDAI 322 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc--cccccC---CCCCEE
Confidence 3578899999999999998877642 368999999999999999999999987899999999 665432 689999
Q ss_pred EEcCCCCCC
Q psy17460 125 IMNPPFGTR 133 (216)
Q Consensus 125 i~npp~~~~ 133 (216)
++|||+...
T Consensus 323 l~D~Pcsg~ 331 (445)
T PRK14904 323 LLDAPCTGT 331 (445)
T ss_pred EEcCCCCCc
Confidence 999998543
No 92
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.42 E-value=1e-12 Score=109.34 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHh-CCC-ceEEEEe-cccccccccc--cccCccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEF-EIT-NCDAILF-EINEKSLDSS--VFKQKVD 122 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~-~~~-~v~~~~~-d~~~~~~~~~--~~~~~~D 122 (216)
.+.++||+|||+|.+...++.. ...+++|+|+|+.+++.|+.|+..+ ++. +++++.. |. ..+... ...+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~--~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDS--KAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccch--hhhhhcccccCCceE
Confidence 4679999999999887666554 3379999999999999999999999 676 6887643 33 222111 1126899
Q ss_pred EEEEcCCCCCC
Q psy17460 123 TVIMNPPFGTR 133 (216)
Q Consensus 123 ~vi~npp~~~~ 133 (216)
+|+|||||+..
T Consensus 192 livcNPPf~~s 202 (321)
T PRK11727 192 ATLCNPPFHAS 202 (321)
T ss_pred EEEeCCCCcCc
Confidence 99999999976
No 93
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.42 E-value=7.2e-13 Score=92.49 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=60.6
Q ss_pred EEEecCCCCHhHHHHhHcC---C-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE-c
Q psy17460 53 VLDLGCGSGILTFGSILLG---A-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM-N 127 (216)
Q Consensus 53 vlD~g~GtG~~~~~~~~~~---~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~-n 127 (216)
|||+|||+|..+..++... + .+++|+|+|+++++.++++....+. +++++++|+ .+++... ++||+|++ .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~--~~l~~~~--~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADA--RDLPFSD--GKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCT--TCHHHHS--SSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCH--hHCcccC--CCeeEEEEcC
Confidence 7999999999999988763 3 7999999999999999999988766 899999999 7766443 79999999 3
Q ss_pred CCCCCC
Q psy17460 128 PPFGTR 133 (216)
Q Consensus 128 pp~~~~ 133 (216)
..+++.
T Consensus 76 ~~~~~~ 81 (101)
T PF13649_consen 76 LSLHHL 81 (101)
T ss_dssp TGGGGS
T ss_pred CccCCC
Confidence 435433
No 94
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=2.1e-12 Score=112.21 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=71.3
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
...+|.+|||+|||+|..+..++... ..+|+++|+++.+++.++.|+...++++++++.+|+ ..++.. ..++||.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da--~~l~~~-~~~~fD~ 310 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA--ERLTEY-VQDTFDR 310 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hhhhhh-hhccCCE
Confidence 34578899999999999998888752 379999999999999999999999987899999999 665411 1268999
Q ss_pred EEEcCCCCCC
Q psy17460 124 VIMNPPFGTR 133 (216)
Q Consensus 124 vi~npp~~~~ 133 (216)
|++|||+...
T Consensus 311 Vl~DaPCsg~ 320 (431)
T PRK14903 311 ILVDAPCTSL 320 (431)
T ss_pred EEECCCCCCC
Confidence 9999999654
No 95
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.41 E-value=2e-12 Score=118.58 Aligned_cols=108 Identities=20% Similarity=0.305 Sum_probs=81.2
Q ss_pred CccccCCHHHHHHHHHHHHhhcCC-CCCCEEEEecCCCCHhHHHHhHcC-------------------------------
Q psy17460 24 LEQYHTPPHLAATILHTIQNNYND-IDGKTVLDLGCGSGILTFGSILLG------------------------------- 71 (216)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~vlD~g~GtG~~~~~~~~~~------------------------------- 71 (216)
+.++.++..+.+.++..+...... .++..++|++||+|++.++++...
T Consensus 164 yr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~ 243 (702)
T PRK11783 164 YRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE 243 (702)
T ss_pred CccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence 333333344555555555544444 457899999999999999877521
Q ss_pred ------------CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 72 ------------ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 72 ------------~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
..+++|+|+++.+++.|+.|+..+++. .+++..+|+ .+++.....++||+|++||||+..
T Consensus 244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~--~~~~~~~~~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 244 AQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV--ADLKNPLPKGPTGLVISNPPYGER 316 (702)
T ss_pred HHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh--hhcccccccCCCCEEEECCCCcCc
Confidence 126999999999999999999999986 599999999 666543222579999999999976
No 96
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=2.8e-12 Score=111.74 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=70.8
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcc
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKV 121 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~ 121 (216)
...+|.+|||+|||+|..+..++.. + .++|+++|+++.+++.++.|+..+++++++++.+|+ ...+.. ...++|
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~--~~~~~~~~~~~~~f 326 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS--RNLLELKPQWRGYF 326 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh--hhcccccccccccC
Confidence 3457899999999999999988875 3 368999999999999999999999988899999999 665411 112689
Q ss_pred cEEEEcCCCCC
Q psy17460 122 DTVIMNPPFGT 132 (216)
Q Consensus 122 D~vi~npp~~~ 132 (216)
|.|++|||+..
T Consensus 327 D~Vl~DaPCSg 337 (434)
T PRK14901 327 DRILLDAPCSG 337 (434)
T ss_pred CEEEEeCCCCc
Confidence 99999999754
No 97
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.41 E-value=3.3e-12 Score=104.24 Aligned_cols=80 Identities=13% Similarity=0.026 Sum_probs=64.1
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI 125 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi 125 (216)
...++.+|||+|||+|..+..++.....+|+|+|+++++++.++.+.... .++.++.+|+ .+.++.. ++||+|+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~--~~~~~~~--~~FD~V~ 122 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDI--LKKDFPE--NTFDMIY 122 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCc--ccCCCCC--CCeEEEE
Confidence 34578899999999999998887653459999999999999999987542 2799999999 6655433 6899999
Q ss_pred EcCCCC
Q psy17460 126 MNPPFG 131 (216)
Q Consensus 126 ~npp~~ 131 (216)
+...+.
T Consensus 123 s~~~l~ 128 (263)
T PTZ00098 123 SRDAIL 128 (263)
T ss_pred EhhhHH
Confidence 965543
No 98
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.40 E-value=3.7e-12 Score=113.53 Aligned_cols=109 Identities=23% Similarity=0.362 Sum_probs=82.1
Q ss_pred cCccccCCHHHHHHHHHHHHhhcCC---CCCCEEEEecCCCCHhHHHHhHcCC---------CEEEEEeCChHHHHHHHH
Q psy17460 23 HLEQYHTPPHLAATILHTIQNNYND---IDGKTVLDLGCGSGILTFGSILLGA---------DFCFALECDKEILDIFID 90 (216)
Q Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~~---~~~~~vlD~g~GtG~~~~~~~~~~~---------~~v~~iD~~~~~~~~~~~ 90 (216)
..|||.||..+++.|+..+...... ..+.+|||+|||+|.+...++.... ..++|+|+++.++..++.
T Consensus 2 ~~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 2 AYGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred CCcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 4789999999999999988653221 1346899999999999988765421 478999999999999999
Q ss_pred hhhHhCCCceEEEEeccccccccc---ccccCcccEEEEcCCCCCC
Q psy17460 91 NKNEFEITNCDAILFEINEKSLDS---SVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 91 ~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~~~D~vi~npp~~~~ 133 (216)
++...+...+++..+|. ..... ....+.||+|++||||...
T Consensus 82 ~l~~~~~~~~~i~~~d~--l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 82 LLGEFALLEINVINFNS--LSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HHhhcCCCCceeeeccc--ccccccccccccCcccEEEeCCCcccc
Confidence 98766522466777776 43221 1112589999999999975
No 99
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.40 E-value=7.9e-12 Score=98.32 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=93.4
Q ss_pred ccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEE
Q psy17460 25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDA 102 (216)
Q Consensus 25 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~ 102 (216)
++..+.+.+...++..+. ..+|.+|||+|||+|..+..++.. ++ ..|+++|+++.+.+.|++++...+..|+.+
T Consensus 52 ~~~is~P~~~a~~l~~L~----l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~ 127 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALD----LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEV 127 (209)
T ss_dssp TEEE--HHHHHHHHHHTT----C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEE
T ss_pred eeechHHHHHHHHHHHHh----cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeE
Confidence 344445556666665554 458999999999999999887775 54 579999999999999999999999889999
Q ss_pred EEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460 103 ILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE 182 (216)
Q Consensus 103 ~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 182 (216)
+.+|. ..-.... .+||.|+++...... -....+.|++ +|+++.-
T Consensus 128 ~~gdg--~~g~~~~--apfD~I~v~~a~~~i-------------------------------p~~l~~qL~~-gGrLV~p 171 (209)
T PF01135_consen 128 VVGDG--SEGWPEE--APFDRIIVTAAVPEI-------------------------------PEALLEQLKP-GGRLVAP 171 (209)
T ss_dssp EES-G--GGTTGGG---SEEEEEESSBBSS---------------------------------HHHHHTEEE-EEEEEEE
T ss_pred EEcch--hhccccC--CCcCEEEEeeccchH-------------------------------HHHHHHhcCC-CcEEEEE
Confidence 99999 5543332 689999997654211 1123455689 9999986
Q ss_pred eecCCCccc-cccccccce
Q psy17460 183 MKYDLNQSY-KFHKKSLHD 200 (216)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~~ 200 (216)
.+-...+.+ .+.+.....
T Consensus 172 i~~~~~~~l~~~~k~~~g~ 190 (209)
T PF01135_consen 172 IGQGGSQRLVRITKKGDGE 190 (209)
T ss_dssp ESSSSSEEEEEEEEETTTE
T ss_pred EccCCceEEEEEEEeCCCc
Confidence 665433433 566655343
No 100
>PLN03075 nicotianamine synthase; Provisional
Probab=99.40 E-value=3.7e-11 Score=98.58 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=93.6
Q ss_pred cccCCCcccCccccCCHHHH---HHHHHHHHhhcCCCCCCEEEEecCCCCHhH-HH-HhHcCC-CEEEEEeCChHHHHHH
Q psy17460 15 FNFSNPKVHLEQYHTPPHLA---ATILHTIQNNYNDIDGKTVLDLGCGSGILT-FG-SILLGA-DFCFALECDKEILDIF 88 (216)
Q Consensus 15 ~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~-~~-~~~~~~-~~v~~iD~~~~~~~~~ 88 (216)
-...+|...+..||--..+. ......+... ...++++|+|+|||.|.++ +. ++...+ ++++|+|+|+++++.|
T Consensus 87 ~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~-~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A 165 (296)
T PLN03075 87 GSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQH-VNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA 165 (296)
T ss_pred hcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHh-hcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH
Confidence 45566766666666655433 2222333222 2237789999999988554 33 334444 7899999999999999
Q ss_pred HHhhhH-hCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHH
Q psy17460 89 IDNKNE-FEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILK 166 (216)
Q Consensus 89 ~~~~~~-~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~ 166 (216)
++++.. .++. +++|..+|+ .+..... +.||+|++. ..+.+++ .+...+++
T Consensus 166 r~~~~~~~gL~~rV~F~~~Da--~~~~~~l--~~FDlVF~~-ALi~~dk-----------------------~~k~~vL~ 217 (296)
T PLN03075 166 RRLVSSDPDLSKRMFFHTADV--MDVTESL--KEYDVVFLA-ALVGMDK-----------------------EEKVKVIE 217 (296)
T ss_pred HHHhhhccCccCCcEEEECch--hhccccc--CCcCEEEEe-ccccccc-----------------------ccHHHHHH
Confidence 999964 6665 699999999 7654222 689999997 5443321 23456666
Q ss_pred HHHHhcCccceeeeeeee
Q psy17460 167 KIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 167 ~~~~~l~~~~g~~~~~~~ 184 (216)
...+.|+| +|.+++..+
T Consensus 218 ~l~~~LkP-GG~Lvlr~~ 234 (296)
T PLN03075 218 HLGKHMAP-GALLMLRSA 234 (296)
T ss_pred HHHHhcCC-CcEEEEecc
Confidence 67777777 777777653
No 101
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.39 E-value=7.1e-12 Score=102.72 Aligned_cols=101 Identities=24% Similarity=0.182 Sum_probs=76.6
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
..++++|||+|||+|..+..+++. ++ .+|+++|+++++++.++++....+..+++++.+|+ .+++... ++||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~--~~l~~~~--~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI--EALPVAD--NSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch--hhCCCCC--CceeEE
Confidence 347889999999999988766654 44 58999999999999999999888877899999999 6665433 689999
Q ss_pred EEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460 125 IMNPPFGTR-NCGIDLAFVQYAADISKV 151 (216)
Q Consensus 125 i~npp~~~~-~~~~~~~~~~~~l~~~~~ 151 (216)
+++..+++. +.....+.+.+++++++.
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGR 178 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcE
Confidence 999877654 222223344455555554
No 102
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.39 E-value=3.8e-12 Score=99.32 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=78.7
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D~vi~ 126 (216)
...+|||+|||+|.++..++...+ .+++|+|+++.+++.|+.++...++.|++++.+|+ .+++.. ...+++|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~--~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA--NELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH--HHHHHhhCCCCceeEEEE
Confidence 456899999999999999888755 79999999999999999999888887999999999 654321 11258999999
Q ss_pred cCCCCCCC------CCCC---HHHHHHHhhcCCceEEEe
Q psy17460 127 NPPFGTRN------CGID---LAFVQYAADISKVVYSLH 156 (216)
Q Consensus 127 npp~~~~~------~~~~---~~~~~~~l~~~~~ly~~~ 156 (216)
|+|-.+.. +... .+.+.+++++++.++...
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 98755431 1112 233455566666555444
No 103
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.39 E-value=1.6e-11 Score=94.88 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.++.++||+|||.|..++.++++|. .|+++|+|+..++.++..+...++ +++....|+ .+.... +.||+|++.
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl--~~~~~~---~~yD~I~st 101 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADL--NDFDFP---EEYDFIVST 101 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BG--CCBS-T---TTEEEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecc--hhcccc---CCcCEEEEE
Confidence 4677999999999999999999997 899999999999999999988888 699999999 555443 689999986
Q ss_pred CCCCCC
Q psy17460 128 PPFGTR 133 (216)
Q Consensus 128 pp~~~~ 133 (216)
-.|...
T Consensus 102 ~v~~fL 107 (192)
T PF03848_consen 102 VVFMFL 107 (192)
T ss_dssp SSGGGS
T ss_pred EEeccC
Confidence 555443
No 104
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.39 E-value=7.5e-12 Score=106.14 Aligned_cols=130 Identities=15% Similarity=0.239 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccc
Q psy17460 31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEK 110 (216)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 110 (216)
....+.++..+...+.. .+.+|||+|||+|.+++.++... .+|+|+|+++++++.+++|+..+++++++++.+|+ .
T Consensus 180 ~~~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~--~ 255 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA--E 255 (353)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH--H
Confidence 34567777776655332 23479999999999999888774 59999999999999999999999988899999999 5
Q ss_pred cccccc---------c-----cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460 111 SLDSSV---------F-----KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF 171 (216)
Q Consensus 111 ~~~~~~---------~-----~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~ 171 (216)
++.... . ...||+|+.||| +.+...+.++...++.+.+|.-+.. ..+.+....+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP----R~G~~~~~l~~l~~~~~ivYvsC~p---~tlaRDl~~L 323 (353)
T TIGR02143 256 EFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP----RAGLDPDTCKLVQAYERILYISCNP---ETLKANLEQL 323 (353)
T ss_pred HHHHHHhhccccccccccccccCCCCEEEECCC----CCCCcHHHHHHHHcCCcEEEEEcCH---HHHHHHHHHH
Confidence 543210 0 124899999999 4566666777666643337777643 4444444444
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.38 E-value=3.6e-11 Score=93.91 Aligned_cols=95 Identities=18% Similarity=0.259 Sum_probs=72.1
Q ss_pred cccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEE
Q psy17460 26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAIL 104 (216)
Q Consensus 26 ~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~ 104 (216)
...|+..+...++..+.. .++.+|||+|||+|.++..++...+ .+|+++|+|+++++.+++|+..++..+++++.
T Consensus 21 ~p~t~~~v~~~l~~~l~~----~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~ 96 (196)
T PRK07402 21 IPLTKREVRLLLISQLRL----EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE 96 (196)
T ss_pred CCCCHHHHHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 346666777666665532 4678999999999999998886543 79999999999999999999988877899999
Q ss_pred ecccccccccccccCcccEEEEc
Q psy17460 105 FEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 105 ~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
+|+ .+..... ...+|.++.+
T Consensus 97 ~d~--~~~~~~~-~~~~d~v~~~ 116 (196)
T PRK07402 97 GSA--PECLAQL-APAPDRVCIE 116 (196)
T ss_pred Cch--HHHHhhC-CCCCCEEEEE
Confidence 999 5422111 1345777664
No 106
>PRK06922 hypothetical protein; Provisional
Probab=99.38 E-value=4.9e-12 Score=112.77 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=84.6
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.++.+|||+|||+|..+..++...+ .+++|+|+|+.|++.|+.+....+. +++++.+|+ .+++.....++||+|++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa--~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDA--INLSSSFEKESVDTIVY 493 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcch--HhCccccCCCCEEEEEE
Confidence 4678999999999999888877544 7999999999999999998766554 788999999 66652222378999999
Q ss_pred cCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 127 NPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 127 npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
++++|... .-+...+. .+.......+++.+.+.|+| +|.+++..+
T Consensus 494 n~vLH~L~---------syIp~~g~---~f~~edl~kiLreI~RVLKP-GGrLII~D~ 538 (677)
T PRK06922 494 SSILHELF---------SYIEYEGK---KFNHEVIKKGLQSAYEVLKP-GGRIIIRDG 538 (677)
T ss_pred chHHHhhh---------hhcccccc---cccHHHHHHHHHHHHHHcCC-CcEEEEEeC
Confidence 99887430 00000000 00112345666677777788 777777544
No 107
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.38 E-value=3.5e-12 Score=103.57 Aligned_cols=102 Identities=21% Similarity=0.284 Sum_probs=83.3
Q ss_pred CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460 19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI 97 (216)
Q Consensus 19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~ 97 (216)
.++..++| |.....+.+.++..+.. .++.+|||+|||+|.++..++..+. .++++|+|+.+++.++.+... .
T Consensus 2 ~~~k~~gq~fl~d~~i~~~i~~~~~~----~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~ 74 (253)
T TIGR00755 2 RPRKSLGQNFLIDESVIQKIVEAANV----LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--Y 74 (253)
T ss_pred CCCCCCCCccCCCHHHHHHHHHhcCC----CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--C
Confidence 46778888 66777888888776643 3688999999999999999999875 799999999999999987754 2
Q ss_pred CceEEEEecccccccccccccCccc---EEEEcCCCCCC
Q psy17460 98 TNCDAILFEINEKSLDSSVFKQKVD---TVIMNPPFGTR 133 (216)
Q Consensus 98 ~~v~~~~~d~~~~~~~~~~~~~~~D---~vi~npp~~~~ 133 (216)
.+++++.+|+ .+.+.. .+| .|++|+||+..
T Consensus 75 ~~v~v~~~D~--~~~~~~----~~d~~~~vvsNlPy~i~ 107 (253)
T TIGR00755 75 ERLEVIEGDA--LKVDLP----DFPKQLKVVSNLPYNIS 107 (253)
T ss_pred CcEEEEECch--hcCChh----HcCCcceEEEcCChhhH
Confidence 3899999999 776643 456 99999999853
No 108
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.38 E-value=7.6e-12 Score=101.39 Aligned_cols=70 Identities=33% Similarity=0.474 Sum_probs=56.8
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.++.+|||+|||+|.+++.+++.++.+|+|+|+|+.+++.|+.|+..+++. .+.+..+| .+||+|++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~------------~~fD~Vva 185 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD------------LKADVIVA 185 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC------------CCcCEEEE
Confidence 468899999999999999888888777999999999999999999887762 33332221 27999999
Q ss_pred cCC
Q psy17460 127 NPP 129 (216)
Q Consensus 127 npp 129 (216)
|..
T Consensus 186 ni~ 188 (250)
T PRK00517 186 NIL 188 (250)
T ss_pred cCc
Confidence 863
No 109
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.38 E-value=5e-12 Score=109.89 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=67.8
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
..+|.+|||+|||+|..+..++... .++|+++|+++++++.++.|++..++. .+.+..+|. .........++||.|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~--~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG--RGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc--ccccccccccccCEE
Confidence 3578999999999999999888763 379999999999999999999998885 344477777 544321112689999
Q ss_pred EEcCCCCCC
Q psy17460 125 IMNPPFGTR 133 (216)
Q Consensus 125 i~npp~~~~ 133 (216)
++|||+...
T Consensus 314 llDaPcSg~ 322 (426)
T TIGR00563 314 LLDAPCSAT 322 (426)
T ss_pred EEcCCCCCC
Confidence 999998764
No 110
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.37 E-value=2e-11 Score=98.23 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=65.4
Q ss_pred CCCEEEEecCCCCHhHHHHhHcC---CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLG---ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~---~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
++.+|||+|||+|..+..+++.. ..+++|+|+++++++.|+.++...+.. +++++.+|+ .+.+. ..+|+|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~--~~~~~----~~~d~v 126 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI--RHVEI----KNASMV 126 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECCh--hhCCC----CCCCEE
Confidence 66799999999999998888752 368999999999999999998776543 789999999 77664 368999
Q ss_pred EEcCCCCCC
Q psy17460 125 IMNPPFGTR 133 (216)
Q Consensus 125 i~npp~~~~ 133 (216)
+++-.+++.
T Consensus 127 ~~~~~l~~~ 135 (239)
T TIGR00740 127 ILNFTLQFL 135 (239)
T ss_pred eeecchhhC
Confidence 988776654
No 111
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.36 E-value=1.4e-11 Score=104.51 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=71.2
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
..+..+||+|||+|.++..+|...+ ..++|+|+++.+++.+..++...+++|+.++.+|+ ..+......+++|.|++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA--~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA--RLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH--HHhhhhCCCCceeEEEE
Confidence 4567999999999999999998765 79999999999999999999998988999999999 55422222379999999
Q ss_pred cCCCCCC
Q psy17460 127 NPPFGTR 133 (216)
Q Consensus 127 npp~~~~ 133 (216)
|.|..+.
T Consensus 199 nFPdPW~ 205 (390)
T PRK14121 199 HFPVPWD 205 (390)
T ss_pred eCCCCcc
Confidence 9887665
No 112
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.35 E-value=6.8e-12 Score=102.73 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=65.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccc-cccCcccEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSS-VFKQKVDTVI 125 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~-~~~~~~D~vi 125 (216)
.|++|||++|-||.+++.++..|+.+|++||.|..+++.++.|+..|+++ +++++.+|+ .++... ...++||+||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv--f~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV--FKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H--HHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH--HHHHHHHhcCCCCCEEE
Confidence 68899999999999999999999889999999999999999999999975 699999999 875432 2336999999
Q ss_pred EcCCCCCC
Q psy17460 126 MNPPFGTR 133 (216)
Q Consensus 126 ~npp~~~~ 133 (216)
+|||=...
T Consensus 201 lDPPsF~k 208 (286)
T PF10672_consen 201 LDPPSFAK 208 (286)
T ss_dssp E--SSEES
T ss_pred ECCCCCCC
Confidence 99995543
No 113
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=2.2e-11 Score=107.30 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=65.7
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.++.+|||+|||+|..+..++.....+|+|+|+|++++..|+.+...... +++++.+|+ .+.+... ++||+|+|.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~-~v~~~~~d~--~~~~~~~--~~fD~I~s~ 339 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKC-SVEFEVADC--TKKTYPD--NSFDVIYSR 339 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCC-ceEEEEcCc--ccCCCCC--CCEEEEEEC
Confidence 46789999999999999888876445899999999999999988753332 799999999 6665432 689999998
Q ss_pred CCCCCC
Q psy17460 128 PPFGTR 133 (216)
Q Consensus 128 pp~~~~ 133 (216)
..+.+.
T Consensus 340 ~~l~h~ 345 (475)
T PLN02336 340 DTILHI 345 (475)
T ss_pred Cccccc
Confidence 776654
No 114
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.34 E-value=1.9e-11 Score=96.09 Aligned_cols=93 Identities=13% Similarity=-0.021 Sum_probs=73.6
Q ss_pred CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
++.+|||+|||+|..+..++.. +..+++|+|+|+++++.|+.+.. +++++.+|+ .+ +... ++||+|+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----~~~~~~~d~--~~-~~~~--~sfD~V~~~ 112 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----NINIIQGSL--FD-PFKD--NFFDLVLTK 112 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----CCcEEEeec--cC-CCCC--CCEEEEEEC
Confidence 5678999999999999988876 34689999999999999988653 577889999 66 4332 799999999
Q ss_pred CCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460 128 PPFGTRNCGIDLAFVQYAADISKV 151 (216)
Q Consensus 128 pp~~~~~~~~~~~~~~~~l~~~~~ 151 (216)
-.+++.++..-.+.+.++.+..+.
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~~~ 136 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCSNR 136 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhcCc
Confidence 988776544445667777777665
No 115
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.34 E-value=2.6e-12 Score=99.24 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=69.1
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
+.....+|.|+|||+|..+..++++.+ +.++|+|.|++|++.|+..+- +++|..+|+ .++... .+.|++
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-----~~~f~~aDl--~~w~p~---~~~dll 96 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-----DATFEEADL--RTWKPE---QPTDLL 96 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-----CCceecccH--hhcCCC---Cccchh
Confidence 445778999999999999999999876 899999999999999977654 789999999 888765 689999
Q ss_pred EEcCCCCCC
Q psy17460 125 IMNPPFGTR 133 (216)
Q Consensus 125 i~npp~~~~ 133 (216)
|+|..|++.
T Consensus 97 faNAvlqWl 105 (257)
T COG4106 97 FANAVLQWL 105 (257)
T ss_pred hhhhhhhhc
Confidence 999999887
No 116
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=1.7e-11 Score=97.96 Aligned_cols=77 Identities=23% Similarity=0.225 Sum_probs=64.3
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.+.+|||+|||+|.++..++..++ .+++++|+++.+++.++..... ++.++.+|+ .+.+... ++||+|+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~----~~~~~~~d~--~~~~~~~--~~fD~vi~~ 105 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE----NVQFICGDA--EKLPLED--SSFDLIVSN 105 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC----CCeEEecch--hhCCCCC--CceeEEEEh
Confidence 457899999999999999988875 6799999999999999887652 788999999 6665433 689999998
Q ss_pred CCCCCC
Q psy17460 128 PPFGTR 133 (216)
Q Consensus 128 pp~~~~ 133 (216)
..+++.
T Consensus 106 ~~l~~~ 111 (240)
T TIGR02072 106 LALQWC 111 (240)
T ss_pred hhhhhc
Confidence 877655
No 117
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.31 E-value=5.7e-11 Score=101.76 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=81.4
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc
Q psy17460 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV 116 (216)
Q Consensus 37 ~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 116 (216)
.+..+...+...++.+|||+|||+|.++..+++....+|+|+|+|+++++.++++.. +. ++++..+|+ .+..
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~--~~l~--- 226 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDY--RDLN--- 226 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECch--hhcC---
Confidence 334444444556788999999999999998887644599999999999999999874 33 588888998 5542
Q ss_pred ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460 117 FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE 182 (216)
Q Consensus 117 ~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 182 (216)
++||.|++...+.+... .....+++.+.++|+| +|.+++.
T Consensus 227 --~~fD~Ivs~~~~ehvg~-----------------------~~~~~~l~~i~r~Lkp-GG~lvl~ 266 (383)
T PRK11705 227 --GQFDRIVSVGMFEHVGP-----------------------KNYRTYFEVVRRCLKP-DGLFLLH 266 (383)
T ss_pred --CCCCEEEEeCchhhCCh-----------------------HHHHHHHHHHHHHcCC-CcEEEEE
Confidence 68999999876654310 1123455566777777 7776663
No 118
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.1e-11 Score=98.06 Aligned_cols=104 Identities=21% Similarity=0.308 Sum_probs=83.7
Q ss_pred CcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC
Q psy17460 20 PKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT 98 (216)
Q Consensus 20 ~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~ 98 (216)
++..+|| |-....+...++..+.. .+++.|||+|+|.|.++..+++.++ +|+++|+|+.++...++.....+
T Consensus 4 ~~K~~GQnFL~d~~v~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~-- 76 (259)
T COG0030 4 PNKRLGQNFLIDKNVIDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYD-- 76 (259)
T ss_pred CCCCcccccccCHHHHHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccccc--
Confidence 3466787 66666777777766654 3688999999999999999999976 89999999999999998876333
Q ss_pred ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
|++++.+|+ ....+... ..++.|++|.||...
T Consensus 77 n~~vi~~Da--Lk~d~~~l-~~~~~vVaNlPY~Is 108 (259)
T COG0030 77 NLTVINGDA--LKFDFPSL-AQPYKVVANLPYNIS 108 (259)
T ss_pred ceEEEeCch--hcCcchhh-cCCCEEEEcCCCccc
Confidence 899999999 77665410 178999999999865
No 119
>KOG1270|consensus
Probab=99.30 E-value=1.1e-11 Score=98.47 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=59.1
Q ss_pred CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC------ceEEEEecccccccccccccCcccE
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT------NCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~------~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
|++|||+|||+|.++..+++.|+ +|.|||+++.+++.|+......... ++++...|+ .... ++||+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~--E~~~-----~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV--EGLT-----GKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch--hhcc-----cccce
Confidence 58899999999999999999986 9999999999999999985544332 255666666 3333 57999
Q ss_pred EEEcCCCCC
Q psy17460 124 VIMNPPFGT 132 (216)
Q Consensus 124 vi~npp~~~ 132 (216)
|+|--.+++
T Consensus 162 VvcsevleH 170 (282)
T KOG1270|consen 162 VVCSEVLEH 170 (282)
T ss_pred eeeHHHHHH
Confidence 999655443
No 120
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.30 E-value=2.4e-11 Score=96.66 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=63.8
Q ss_pred CEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460 51 KTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
++|||+|||+|..+..+++..+ .+++|+|+|+++++.++.++...++. +++++.+|+ ...+.. ++||+|++.-
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~--~~~~~~---~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS--AKDPFP---DTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc--ccCCCC---CCCCEeehHH
Confidence 4799999999999988887653 68999999999999999999887765 689999999 555443 6899999865
Q ss_pred CCCC
Q psy17460 129 PFGT 132 (216)
Q Consensus 129 p~~~ 132 (216)
.+++
T Consensus 76 ~l~~ 79 (224)
T smart00828 76 VIHH 79 (224)
T ss_pred HHHh
Confidence 5543
No 121
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.30 E-value=6.2e-11 Score=99.50 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=72.2
Q ss_pred CCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
++.+|||+|||+|.++..+++. +..+++++|+++++++.++++... .+++++.+|+ .+.+... ++||+|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~--e~lp~~~--~sFDvVIs~ 185 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDA--EDLPFPT--DYADRYVSA 185 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccH--HhCCCCC--CceeEEEEc
Confidence 5679999999999999887765 336899999999999999987642 2688999999 6665443 689999998
Q ss_pred CCCCCC-CCCCCHHHHHHHhhcCCce
Q psy17460 128 PPFGTR-NCGIDLAFVQYAADISKVV 152 (216)
Q Consensus 128 pp~~~~-~~~~~~~~~~~~l~~~~~l 152 (216)
..+++. +.....+-+.+.+++++.+
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~L 211 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKA 211 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEE
Confidence 887755 3222333444555555553
No 122
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.29 E-value=6.3e-11 Score=95.05 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=80.4
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc----ccCc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV----FKQK 120 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~----~~~~ 120 (216)
.++++|||+|||+|..++.++.. + .++|+++|+++++++.|+.|+..+++. +++++.+|+ .+..... ..++
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda--~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA--LSALDQLLNNDPKPE 144 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH--HHHHHHHHhCCCCCC
Confidence 36789999999999988776654 2 479999999999999999999999986 699999999 6653221 1258
Q ss_pred ccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 121 VDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 121 ~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
||+||+|.+-. ....++..+.+.++| +|.++++.-
T Consensus 145 fD~VfiDa~k~----------------------------~y~~~~~~~~~ll~~-GG~ii~dn~ 179 (234)
T PLN02781 145 FDFAFVDADKP----------------------------NYVHFHEQLLKLVKV-GGIIAFDNT 179 (234)
T ss_pred CCEEEECCCHH----------------------------HHHHHHHHHHHhcCC-CeEEEEEcC
Confidence 99999986311 012344556677788 888887544
No 123
>KOG3191|consensus
Probab=99.29 E-value=1.6e-10 Score=87.00 Aligned_cols=121 Identities=17% Similarity=0.272 Sum_probs=91.2
Q ss_pred CCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
..+.++|+|||+|..+..+++. ++ ....++|+||.+.+..++.+..++. +++.+..|. ..-... +++|+++.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl--~~~l~~---~~VDvLvf 116 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDL--LSGLRN---ESVDVLVF 116 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhH--Hhhhcc---CCccEEEE
Confidence 4778999999999999888875 33 6788999999999999999999988 799999999 766544 89999999
Q ss_pred cCCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460 127 NPPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA 181 (216)
Q Consensus 127 npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 181 (216)
||||... ......+.+..++.-+. ......+.++.+....|.| .|.+..
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~-----~Gr~v~d~ll~~v~~iLSp-~Gv~Yl 166 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGK-----DGREVTDRLLPQVPDILSP-RGVFYL 166 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCc-----chHHHHHHHHhhhhhhcCc-CceEEe
Confidence 9999987 33343556666665444 1122244555556667777 666554
No 124
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=1.1e-10 Score=97.44 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=66.3
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
...++.+|||+|||+|.++..+++... +.|+++|+++++++.|+.++..++.+++.++.+|+ .+.+... .+||+
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~--~~~~~~~--~~fD~ 152 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG--YYGVPEF--APYDV 152 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh--hhccccc--CCccE
Confidence 345788999999999999988887632 47999999999999999999988887899999999 6655433 57999
Q ss_pred EEEcC
Q psy17460 124 VIMNP 128 (216)
Q Consensus 124 vi~np 128 (216)
|+++.
T Consensus 153 Ii~~~ 157 (322)
T PRK13943 153 IFVTV 157 (322)
T ss_pred EEECC
Confidence 99864
No 125
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.27 E-value=3.3e-12 Score=88.70 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=60.4
Q ss_pred EEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460 54 LDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT 132 (216)
Q Consensus 54 lD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~ 132 (216)
||+|||+|.++..++...+ .+++|+|+|+.+++.+++++......+...+..+. .+.......++||+|++.-.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDV--LDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--S--SS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeec--CChhhcccccccceehhhhhHhh
Confidence 7999999999988887744 79999999999999999988876654455555555 44332222259999999877764
Q ss_pred CCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceee
Q psy17460 133 RNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDV 179 (216)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~ 179 (216)
. .+...+++.+.+.|+| +|.+
T Consensus 79 l-------------------------~~~~~~l~~~~~~L~p-gG~l 99 (99)
T PF08242_consen 79 L-------------------------EDIEAVLRNIYRLLKP-GGIL 99 (99)
T ss_dssp --------------------------S-HHHHHHHHTTT-TS-S-EE
T ss_pred h-------------------------hhHHHHHHHHHHHcCC-CCCC
Confidence 4 2345677777888888 8764
No 126
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.27 E-value=1.3e-10 Score=92.34 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=65.6
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.++.+|||+|||+|.++..++..+. +|+|+|+|++++..|+.++...+.. ++++..+|+ .+.+ ++||+|++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----~~fD~ii~ 125 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL--LSLC-----GEFDIVVC 125 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh--hhCC-----CCcCEEEE
Confidence 4688999999999999999988755 8999999999999999998776653 799999999 6654 58999998
Q ss_pred cCCCCCC
Q psy17460 127 NPPFGTR 133 (216)
Q Consensus 127 npp~~~~ 133 (216)
.-.+.+.
T Consensus 126 ~~~l~~~ 132 (219)
T TIGR02021 126 MDVLIHY 132 (219)
T ss_pred hhHHHhC
Confidence 6555443
No 127
>PRK04266 fibrillarin; Provisional
Probab=99.27 E-value=2.1e-10 Score=91.42 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460 31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE 109 (216)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 109 (216)
......++..+ ..+...++.+|||+|||+|.++..++... ...|+|+|+++.|++.+.+++... +|+.++.+|+
T Consensus 55 ~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~-- 129 (226)
T PRK04266 55 SKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADA-- 129 (226)
T ss_pred cchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCC--
Confidence 34445555444 23355688899999999999999988864 368999999999999887776543 3899999999
Q ss_pred cccc-cccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEE
Q psy17460 110 KSLD-SSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYS 154 (216)
Q Consensus 110 ~~~~-~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~ 154 (216)
.+.. .....++||+|+++.+.... .....+...+.+++++.+.+
T Consensus 130 ~~~~~~~~l~~~~D~i~~d~~~p~~-~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 130 RKPERYAHVVEKVDVIYQDVAQPNQ-AEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred CCcchhhhccccCCEEEECCCChhH-HHHHHHHHHHhcCCCcEEEE
Confidence 5421 01112579999987653110 00012344455666665444
No 128
>KOG1499|consensus
Probab=99.26 E-value=2.8e-11 Score=99.90 Aligned_cols=109 Identities=24% Similarity=0.323 Sum_probs=84.1
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEecccccccccccccCcccEEE
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN-CDAILFEINEKSLDSSVFKQKVDTVI 125 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~D~vi 125 (216)
.++++.|||+|||||.+++++|+.|+.+|+++|.+. +.+.|.+.+..|++.+ ++++.|.+++.++|. +++|+|+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~----eKVDiIv 132 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPV----EKVDIIV 132 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCc----cceeEEe
Confidence 368999999999999999999999999999999976 5599999999999884 999999998887772 7999999
Q ss_pred EcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeee
Q psy17460 126 MNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEM 183 (216)
Q Consensus 126 ~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 183 (216)
+ +|.-.++ +..+..+.++-.--+||++ +|.++-..
T Consensus 133 S-------------EWMGy~L---------l~EsMldsVl~ARdkwL~~-~G~i~P~~ 167 (346)
T KOG1499|consen 133 S-------------EWMGYFL---------LYESMLDSVLYARDKWLKE-GGLIYPDR 167 (346)
T ss_pred e-------------hhhhHHH---------HHhhhhhhhhhhhhhccCC-CceEcccc
Confidence 8 2222222 1222333444445678888 77766533
No 129
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.26 E-value=1.9e-10 Score=91.99 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=65.6
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
.++.+|||+|||+|..+..++..++ .+++++|+++.+++.++.++...+.. +++++.+|+ .+.+... ++||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~--~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA--EALPFPD--NSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc--ccCCCCC--CCccEE
Confidence 3678999999999999999888763 79999999999999999998765443 689999999 6655432 689999
Q ss_pred EEcCCCC
Q psy17460 125 IMNPPFG 131 (216)
Q Consensus 125 i~npp~~ 131 (216)
+++..++
T Consensus 126 ~~~~~l~ 132 (239)
T PRK00216 126 TIAFGLR 132 (239)
T ss_pred EEecccc
Confidence 9865444
No 130
>PRK05785 hypothetical protein; Provisional
Probab=99.25 E-value=1.8e-10 Score=91.93 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL 112 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 112 (216)
....++..+.... .++.+|||+|||||.++..+++....+|+|+|+|++|++.|+.. ..++.+|+ .++
T Consensus 37 wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~--~~l 104 (226)
T PRK05785 37 WRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSF--EAL 104 (226)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEech--hhC
Confidence 3444555554321 14679999999999999988887335899999999999998764 13578999 677
Q ss_pred ccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhc
Q psy17460 113 DSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADI 148 (216)
Q Consensus 113 ~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~ 148 (216)
++.. ++||+|+++...++. +.....+.+.+++++
T Consensus 105 p~~d--~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 105 PFRD--KSFDVVMSSFALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred CCCC--CCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence 7654 799999998877655 433445555556654
No 131
>PRK08317 hypothetical protein; Provisional
Probab=99.25 E-value=2.6e-10 Score=91.04 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=72.8
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcC-C-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLG-A-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~-~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
..++.+|||+|||+|..+..++... + .+++|+|+++.+++.++.+..... .++++..+|+ ...+... ++||+|
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-~~~~~~~~d~--~~~~~~~--~~~D~v 91 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-PNVEFVRGDA--DGLPFPD--GSFDAV 91 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-CceEEEeccc--ccCCCCC--CCceEE
Confidence 3478899999999999999888763 3 699999999999999998833222 2799999999 6655433 689999
Q ss_pred EEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460 125 IMNPPFGTR-NCGIDLAFVQYAADISKV 151 (216)
Q Consensus 125 i~npp~~~~-~~~~~~~~~~~~l~~~~~ 151 (216)
+++..+++. +.....+.+..++++++.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 119 (241)
T PRK08317 92 RSDRVLQHLEDPARALAEIARVLRPGGR 119 (241)
T ss_pred EEechhhccCCHHHHHHHHHHHhcCCcE
Confidence 998877654 322233344444444444
No 132
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.25 E-value=3.2e-10 Score=90.80 Aligned_cols=91 Identities=24% Similarity=0.301 Sum_probs=70.0
Q ss_pred HHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccc
Q psy17460 38 LHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVF 117 (216)
Q Consensus 38 ~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 117 (216)
+..+...+...++.+|||+|||+|.++..+++.+. +++++|++++++..++.++...+. ++++..+|+ .+.+.. .
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~--~~~~~~-~ 111 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTA--EELAAE-H 111 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCH--HHhhhh-c
Confidence 34444443345788999999999999988888765 899999999999999998877665 688888888 655421 1
Q ss_pred cCcccEEEEcCCCCCC
Q psy17460 118 KQKVDTVIMNPPFGTR 133 (216)
Q Consensus 118 ~~~~D~vi~npp~~~~ 133 (216)
.++||+|+++..+.+.
T Consensus 112 ~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 112 PGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCCccEEEEhhHhhcc
Confidence 2689999997766544
No 133
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.25 E-value=4.1e-11 Score=93.45 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=60.6
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVI 125 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi 125 (216)
.++++|+|++||.|.+++.+++.+ ++.|+++|++|.+++.+++|+..|+++ ++.++.+|+ .++... ..+|.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~--~~~~~~---~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA--REFLPE---GKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G--GG---T---T-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH--HHhcCc---cccCEEE
Confidence 368999999999999999999843 368999999999999999999999987 599999999 877653 7999999
Q ss_pred EcCCCC
Q psy17460 126 MNPPFG 131 (216)
Q Consensus 126 ~npp~~ 131 (216)
+|.|..
T Consensus 175 m~lp~~ 180 (200)
T PF02475_consen 175 MNLPES 180 (200)
T ss_dssp E--TSS
T ss_pred ECChHH
Confidence 999865
No 134
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.25 E-value=2.8e-10 Score=94.85 Aligned_cols=93 Identities=23% Similarity=0.207 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC-----CCceEEEEec
Q psy17460 32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE-----ITNCDAILFE 106 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~-----~~~v~~~~~d 106 (216)
...+.++..+... ...++.+|||+|||+|.++..+++.+. +|+|+|+|++|++.++++..... ..++++..+|
T Consensus 128 ~~v~~~l~~l~~~-~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 128 QTVEKVLLWLAED-GSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHHhc-CCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 4445555555432 123678999999999999999998865 89999999999999999987642 2257888888
Q ss_pred ccccccccccccCcccEEEEcCCCCCC
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
+ .++. ++||+|+|...+++.
T Consensus 206 l--~~l~-----~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 206 L--ESLS-----GKYDTVTCLDVLIHY 225 (315)
T ss_pred h--hhcC-----CCcCEEEEcCEEEec
Confidence 8 4432 689999998776554
No 135
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.24 E-value=6.2e-11 Score=104.49 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=77.6
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.++.... ..++++++.+|+.....+.. .++||+|+++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~--~~~fD~I~~~ 110 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNIS--DGSVDLIFSN 110 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCC--CCCEEEEehh
Confidence 467799999999999999999875 489999999999988765322 22379999999932233332 2789999999
Q ss_pred CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460 128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE 182 (216)
Q Consensus 128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 182 (216)
.++++... .....+++.+.++|+| +|.+++.
T Consensus 111 ~~l~~l~~-----------------------~~~~~~l~~~~r~Lk~-gG~l~~~ 141 (475)
T PLN02336 111 WLLMYLSD-----------------------KEVENLAERMVKWLKV-GGYIFFR 141 (475)
T ss_pred hhHHhCCH-----------------------HHHHHHHHHHHHhcCC-CeEEEEE
Confidence 88765411 1124566667778888 8877764
No 136
>KOG1540|consensus
Probab=99.24 E-value=2.2e-10 Score=90.68 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred cCCCCCCEEEEecCCCCHhHHHHhHc-CC------CEEEEEeCChHHHHHHHHhhhHhCCC---ceEEEEeccccccccc
Q psy17460 45 YNDIDGKTVLDLGCGSGILTFGSILL-GA------DFCFALECDKEILDIFIDNKNEFEIT---NCDAILFEINEKSLDS 114 (216)
Q Consensus 45 ~~~~~~~~vlD~g~GtG~~~~~~~~~-~~------~~v~~iD~~~~~~~~~~~~~~~~~~~---~v~~~~~d~~~~~~~~ 114 (216)
+.+..+.++||++||||-++.-+... .. .+|+..|+||+|+..++++....++. .+.++.+|+ .++|+
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA--E~LpF 173 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA--EDLPF 173 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc--ccCCC
Confidence 34457899999999999999887765 22 69999999999999999998766654 389999999 67776
Q ss_pred ccccCcccEEEEcCCCCCCCCCC---CHHHHHHHhhcCCceEEE
Q psy17460 115 SVFKQKVDTVIMNPPFGTRNCGI---DLAFVQYAADISKVVYSL 155 (216)
Q Consensus 115 ~~~~~~~D~vi~npp~~~~~~~~---~~~~~~~~l~~~~~ly~~ 155 (216)
.+ ++||...+ .|+.++... .++-.+++|+++++++++
T Consensus 174 dd--~s~D~yTi--afGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 174 DD--DSFDAYTI--AFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred CC--CcceeEEE--ecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 65 89999988 666553322 233334445555544433
No 137
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.23 E-value=4.7e-11 Score=91.65 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=56.3
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
.-.++||+|||.|.++..++.+ +..++++|+++.+++.|+.++... ++|+++.+|+ .+..+. ++||+|++.-
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dv--p~~~P~---~~FDLIV~SE 114 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--PHVEWIQADV--PEFWPE---GRFDLIVLSE 114 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-T--TT---S---S-EEEEEEES
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcC--CCCCCC---CCeeEEEEeh
Confidence 4468999999999999999998 469999999999999999998754 4899999999 776544 7999999854
Q ss_pred CCC
Q psy17460 129 PFG 131 (216)
Q Consensus 129 p~~ 131 (216)
-+.
T Consensus 115 VlY 117 (201)
T PF05401_consen 115 VLY 117 (201)
T ss_dssp -GG
T ss_pred HhH
Confidence 433
No 138
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=4.7e-10 Score=89.14 Aligned_cols=107 Identities=22% Similarity=0.193 Sum_probs=84.6
Q ss_pred HhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEeccccccccccccc
Q psy17460 42 QNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITN-CDAILFEINEKSLDSSVFK 118 (216)
Q Consensus 42 ~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~ 118 (216)
...++..+|.+|+|.|+|+|.++..++.. ++ ++|+++|+.++.++.|++|++..++.+ +++..+|+ .+....
T Consensus 87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv--~~~~~~--- 161 (256)
T COG2519 87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV--REGIDE--- 161 (256)
T ss_pred HHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc--cccccc---
Confidence 33345578999999999999999998864 55 899999999999999999999988875 99999999 777665
Q ss_pred CcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460 119 QKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK 157 (216)
Q Consensus 119 ~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~ 157 (216)
+.||+||.|.|=. -...+...+++.+++.+.++.+
T Consensus 162 ~~vDav~LDmp~P----W~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 162 EDVDAVFLDLPDP----WNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred cccCEEEEcCCCh----HHHHHHHHHHhCCCcEEEEEcC
Confidence 5999999998833 3344455666666665444343
No 139
>PRK00811 spermidine synthase; Provisional
Probab=99.23 E-value=2e-10 Score=94.71 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=64.3
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhC-----CCceEEEEecccccccccccccCcc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFE-----ITNCDAILFEINEKSLDSSVFKQKV 121 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~ 121 (216)
..+++||++|||+|..+.+++++ +..+|+++|+|+.+++.|++++.... -++++++.+|+ ..+... ..++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da--~~~l~~-~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG--IKFVAE-TENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch--HHHHhh-CCCcc
Confidence 35789999999999999998887 34799999999999999999886432 23799999999 765533 23689
Q ss_pred cEEEEcCC
Q psy17460 122 DTVIMNPP 129 (216)
Q Consensus 122 D~vi~npp 129 (216)
|+|++|.+
T Consensus 152 DvIi~D~~ 159 (283)
T PRK00811 152 DVIIVDST 159 (283)
T ss_pred cEEEECCC
Confidence 99999853
No 140
>KOG4300|consensus
Probab=99.23 E-value=3.9e-10 Score=86.73 Aligned_cols=111 Identities=15% Similarity=0.134 Sum_probs=83.0
Q ss_pred EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceE-EEEecccccccccccccCcccEEEEcCCC
Q psy17460 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCD-AILFEINEKSLDSSVFKQKVDTVIMNPPF 130 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~D~vi~npp~ 130 (216)
.||++|||||..--..-......|+++|.+++|-+.+.+.+..+.-.+++ |+.++. .+++. ..+.++|+|+|
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g--e~l~~-l~d~s~DtVV~---- 151 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG--ENLPQ-LADGSYDTVVC---- 151 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech--hcCcc-cccCCeeeEEE----
Confidence 58999999999765433332369999999999999999999887655777 999999 66651 12289999998
Q ss_pred CCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee-eeecCCCccc
Q psy17460 131 GTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA-EMKYDLNQSY 191 (216)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~-~~~~~~~~~~ 191 (216)
.+.+++..+....++..+++|+| +|++++ |++...-..+
T Consensus 152 ---------------------TlvLCSve~~~k~L~e~~rlLRp-gG~iifiEHva~~y~~~ 191 (252)
T KOG4300|consen 152 ---------------------TLVLCSVEDPVKQLNEVRRLLRP-GGRIIFIEHVAGEYGFW 191 (252)
T ss_pred ---------------------EEEEeccCCHHHHHHHHHHhcCC-CcEEEEEecccccchHH
Confidence 34556667778888888888888 777664 6665444333
No 141
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.22 E-value=2.7e-10 Score=89.85 Aligned_cols=106 Identities=16% Similarity=0.068 Sum_probs=68.8
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcC-C-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc------ccccC
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLG-A-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS------SVFKQ 119 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~-~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~~ 119 (216)
.++.+|||+|||+|.++..+++.. + +.|+|+|+++ + ...++++++++|+ .+... ....+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~--~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDF--RDELVLKALLERVGDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCC--CChHHHHHHHHHhCCC
Confidence 468899999999999998888763 3 6999999998 1 1233789999999 55320 11126
Q ss_pred cccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460 120 KVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE 182 (216)
Q Consensus 120 ~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 182 (216)
+||+|++|+..+.. ++..+.... .. ..+.+++.+.+.|+| +|.+++.
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~---~~------------~~~~~L~~~~~~Lkp-GG~~vi~ 164 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRA---MY------------LVELALDMCRDVLAP-GGSFVVK 164 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHH---HH------------HHHHHHHHHHHHcCC-CCEEEEE
Confidence 89999998733222 111110000 00 013466667777888 7777774
No 142
>KOG2671|consensus
Probab=99.22 E-value=5e-12 Score=103.63 Aligned_cols=129 Identities=18% Similarity=0.171 Sum_probs=91.7
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHH-------HHHHhhhHhCCC--ceEEEEeccccccccccc
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILD-------IFIDNKNEFEIT--NCDAILFEINEKSLDSSV 116 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~-------~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~ 116 (216)
...+|+.|.|++.|||++.+.++..|+ .|+|.|||..++. ..+.|++++|.. =+.++.+|+ .+.+...
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~--sn~~~rs 281 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADF--SNPPLRS 281 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecc--cCcchhh
Confidence 446899999999999999999999987 9999999999887 456788888865 378999999 8877654
Q ss_pred ccCcccEEEEcCCCCCC--CCCC-CHH---HHHH----HhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460 117 FKQKVDTVIMNPPFGTR--NCGI-DLA---FVQY----AADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA 181 (216)
Q Consensus 117 ~~~~~D~vi~npp~~~~--~~~~-~~~---~~~~----~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 181 (216)
...||+|+|||||+.+ .+.. ..+ ...+ ...+.-..|++ .+....++..+.+.|.. +|+++.
T Consensus 282 -n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl--~~~v~dll~fss~~L~~-ggrlv~ 352 (421)
T KOG2671|consen 282 -NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSL--SSLVYDLLCFSSRRLVD-GGRLVF 352 (421)
T ss_pred -cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHH--HHHHhhHHHhhHhhhhc-CceEEE
Confidence 3789999999999987 1111 000 0000 00000001111 12356777778888888 898887
No 143
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.22 E-value=7.5e-12 Score=97.69 Aligned_cols=85 Identities=22% Similarity=0.236 Sum_probs=73.0
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccccccCcccE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
+..+|.+|||.+.|-|..+++++++|+..|+.+|.||+.+++|..|.=..++- +++++.||+ .++.....+++||+
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~--~e~V~~~~D~sfDa 208 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA--YEVVKDFDDESFDA 208 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH--HHHHhcCCccccce
Confidence 34579999999999999999999999989999999999999999986433332 689999999 88876666689999
Q ss_pred EEEcCCCCC
Q psy17460 124 VIMNPPFGT 132 (216)
Q Consensus 124 vi~npp~~~ 132 (216)
|+-|||=..
T Consensus 209 IiHDPPRfS 217 (287)
T COG2521 209 IIHDPPRFS 217 (287)
T ss_pred EeeCCCccc
Confidence 999999543
No 144
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.21 E-value=5.2e-10 Score=89.92 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=85.3
Q ss_pred HHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc-
Q psy17460 40 TIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS- 115 (216)
Q Consensus 40 ~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~- 115 (216)
++...+...+|.+|+|.|+|+|+++..+++. ++ ++|+..|..++.++.|++|++..++. ++++...|+ .+.-+.
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv--~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV--CEEGFDE 108 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G--GCG--ST
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce--ecccccc
Confidence 3344445579999999999999999998875 54 89999999999999999999999987 799999999 543321
Q ss_pred cccCcccEEEEcCCCCCCCCCCCHHHHHHHh-hcCCceEEEeeCcchHHHHHHHHHh
Q psy17460 116 VFKQKVDTVIMNPPFGTRNCGIDLAFVQYAA-DISKVVYSLHKTSTRESILKKIQAF 171 (216)
Q Consensus 116 ~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l-~~~~~ly~~~~~~~~~~~~~~~~~~ 171 (216)
.....+|.||.|.|- +-........++ +.++.+-++. .+.+.+.+.+..+
T Consensus 109 ~~~~~~DavfLDlp~----Pw~~i~~~~~~L~~~gG~i~~fs--P~ieQv~~~~~~L 159 (247)
T PF08704_consen 109 ELESDFDAVFLDLPD----PWEAIPHAKRALKKPGGRICCFS--PCIEQVQKTVEAL 159 (247)
T ss_dssp T-TTSEEEEEEESSS----GGGGHHHHHHHE-EEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred cccCcccEEEEeCCC----HHHHHHHHHHHHhcCCceEEEEC--CCHHHHHHHHHHH
Confidence 112689999999984 444556777777 5565444333 3455555444433
No 145
>PRK04457 spermidine synthase; Provisional
Probab=99.21 E-value=2.6e-10 Score=92.98 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=63.4
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
++++|||+|||+|.++..++...+ .+++++|+|+++++.|++++...+. ++++++.+|+ .++.... .++||+|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da--~~~l~~~-~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADG--AEYIAVH-RHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCH--HHHHHhC-CCCCCEEEE
Confidence 567999999999999998877654 7899999999999999999865543 3799999999 6654322 268999999
Q ss_pred cC
Q psy17460 127 NP 128 (216)
Q Consensus 127 np 128 (216)
|.
T Consensus 143 D~ 144 (262)
T PRK04457 143 DG 144 (262)
T ss_pred eC
Confidence 84
No 146
>PRK10742 putative methyltransferase; Provisional
Probab=99.21 E-value=1e-09 Score=87.57 Aligned_cols=126 Identities=12% Similarity=0.091 Sum_probs=91.9
Q ss_pred CCCCCC--EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh------C--C-CceEEEEeccccccccc
Q psy17460 46 NDIDGK--TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF------E--I-TNCDAILFEINEKSLDS 114 (216)
Q Consensus 46 ~~~~~~--~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~------~--~-~~v~~~~~d~~~~~~~~ 114 (216)
+..+|. +|||+.+|+|..+++++..|+ +|+++|.++.+....+.+++.. + + .+++++.+|. .++..
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da--~~~L~ 159 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS--LTALT 159 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH--HHHHh
Confidence 334666 899999999999999999988 5999999999999999998874 2 2 3699999999 77764
Q ss_pred ccccCcccEEEEcCCCCCCCCCC-CHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 115 SVFKQKVDTVIMNPPFGTRNCGI-DLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 115 ~~~~~~~D~vi~npp~~~~~~~~-~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
.. .++||+|++||||.+..+.+ .++-+.....+.+ ...+.+++++.+.+.-+. ++|++..
T Consensus 160 ~~-~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g------~d~d~~~lL~~Al~~A~k---RVVVKrp 220 (250)
T PRK10742 160 DI-TPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVG------PDLDADGLLEPARLLATK---RVVVKRP 220 (250)
T ss_pred hC-CCCCcEEEECCCCCCCccccchhhhHHHHHHhcC------CCCChHHHHHHHHHhcCc---eEEEecC
Confidence 42 25799999999999984443 3333332222222 234567888888887333 5666544
No 147
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.20 E-value=2.7e-10 Score=95.05 Aligned_cols=93 Identities=20% Similarity=0.346 Sum_probs=79.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEecccccccccccccCcccEEEEc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITN-CDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
+|.+|+|++||.|.+++.+|+.+...|+++|+||.+++.+++|+..|++.+ ++.++||+ .+..... ..+|.|+++
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~--rev~~~~--~~aDrIim~ 263 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA--REVAPEL--GVADRIIMG 263 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH--HHhhhcc--ccCCEEEeC
Confidence 599999999999999999999988669999999999999999999999985 99999999 7777554 689999999
Q ss_pred CCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460 128 PPFGTRNCGIDLAFVQYAADISKV 151 (216)
Q Consensus 128 pp~~~~~~~~~~~~~~~~l~~~~~ 151 (216)
.|... .+++..++...+.
T Consensus 264 ~p~~a------~~fl~~A~~~~k~ 281 (341)
T COG2520 264 LPKSA------HEFLPLALELLKD 281 (341)
T ss_pred CCCcc------hhhHHHHHHHhhc
Confidence 88642 2467766666554
No 148
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.20 E-value=7.6e-10 Score=88.26 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=65.2
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccccccCcccEEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.++.+|||+|||+|.++..++..+. .++|+|+++++++.++++....+. .++++..+|+ ... .++||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~--~~~-----~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL--ESL-----LGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc--hhc-----cCCcCEEEE
Confidence 4677999999999999999988865 799999999999999999887766 3789999997 332 168999999
Q ss_pred cCCCCCC
Q psy17460 127 NPPFGTR 133 (216)
Q Consensus 127 npp~~~~ 133 (216)
.-.+++.
T Consensus 134 ~~~l~~~ 140 (230)
T PRK07580 134 LDVLIHY 140 (230)
T ss_pred cchhhcC
Confidence 8777554
No 149
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.19 E-value=2.5e-10 Score=93.16 Aligned_cols=109 Identities=9% Similarity=0.018 Sum_probs=77.4
Q ss_pred CCCEEEEecCCCCH----hHHHHhHcC------CCEEEEEeCChHHHHHHHHhhhH----hC------------------
Q psy17460 49 DGKTVLDLGCGSGI----LTFGSILLG------ADFCFALECDKEILDIFIDNKNE----FE------------------ 96 (216)
Q Consensus 49 ~~~~vlD~g~GtG~----~~~~~~~~~------~~~v~~iD~~~~~~~~~~~~~~~----~~------------------ 96 (216)
++.+|||+|||||. +++.+++.+ ..+|+|+|+|+.+++.|+..+.. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 455555432 25899999999999999986411 00
Q ss_pred ----C-CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460 97 ----I-TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF 171 (216)
Q Consensus 97 ----~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~ 171 (216)
+ .+|+|..+|+ .+.+... ++||+|+|.-.+++. .......+++...+.
T Consensus 179 v~~~ir~~V~F~~~dl--~~~~~~~--~~fD~I~crnvl~yf-----------------------~~~~~~~~l~~l~~~ 231 (264)
T smart00138 179 VKPELKERVRFAKHNL--LAESPPL--GDFDLIFCRNVLIYF-----------------------DEPTQRKLLNRFAEA 231 (264)
T ss_pred EChHHhCcCEEeeccC--CCCCCcc--CCCCEEEechhHHhC-----------------------CHHHHHHHHHHHHHH
Confidence 1 1589999999 7765422 789999995543322 223445678888899
Q ss_pred cCccceeeeeeeec
Q psy17460 172 KNVEQVDVIAEMKY 185 (216)
Q Consensus 172 l~~~~g~~~~~~~~ 185 (216)
|+| +|.+++-..-
T Consensus 232 L~p-GG~L~lg~~E 244 (264)
T smart00138 232 LKP-GGYLFLGHSE 244 (264)
T ss_pred hCC-CeEEEEECcc
Confidence 999 9999985443
No 150
>PLN02476 O-methyltransferase
Probab=99.19 E-value=1e-09 Score=89.63 Aligned_cols=80 Identities=11% Similarity=0.092 Sum_probs=67.6
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc----ccCc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV----FKQK 120 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~----~~~~ 120 (216)
.++++|||+|+|+|..++.++.. + .++|+++|.+++.++.|+.+++..|+. +++++.||+ .+..... ..++
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA--~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA--AESLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH--HHHHHHHHhcccCCC
Confidence 46889999999999999988875 2 268999999999999999999999987 799999999 6654321 1258
Q ss_pred ccEEEEcCC
Q psy17460 121 VDTVIMNPP 129 (216)
Q Consensus 121 ~D~vi~npp 129 (216)
||+||.|++
T Consensus 195 FD~VFIDa~ 203 (278)
T PLN02476 195 YDFAFVDAD 203 (278)
T ss_pred CCEEEECCC
Confidence 999999985
No 151
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.18 E-value=1e-09 Score=86.86 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=64.2
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI 125 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi 125 (216)
.++.+|||+|||+|..+..++...+ .+++++|+++.+++.++.+.. ...+++++.+|+ .+.+... ++||+|+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~--~~~~~~~--~~~D~i~ 111 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADA--EALPFED--NSFDAVT 111 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecch--hcCCCCC--CcEEEEE
Confidence 3688999999999999998888765 589999999999999998876 222789999999 6665432 6899999
Q ss_pred EcCCCCC
Q psy17460 126 MNPPFGT 132 (216)
Q Consensus 126 ~npp~~~ 132 (216)
++-.++.
T Consensus 112 ~~~~~~~ 118 (223)
T TIGR01934 112 IAFGLRN 118 (223)
T ss_pred EeeeeCC
Confidence 8665543
No 152
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.17 E-value=5.3e-10 Score=91.70 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC----CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA----DFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN 108 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~----~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 108 (216)
+.+.+...+...+. .++.+|||+|||+|.++..++...+ ..++|+|+|+++++.|.++. +++.+..+|+
T Consensus 70 l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~- 142 (272)
T PRK11088 70 LRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASS- 142 (272)
T ss_pred HHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeec-
Confidence 44455444544322 2456899999999999988776532 37999999999999997763 2688999999
Q ss_pred ccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460 109 EKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK 157 (216)
Q Consensus 109 ~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~ 157 (216)
.++++.. ++||+|++... ....+.+.+++++++.++...+
T Consensus 143 -~~lp~~~--~sfD~I~~~~~------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 143 -HRLPFAD--QSLDAIIRIYA------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -ccCCCcC--CceeEEEEecC------CCCHHHHHhhccCCCEEEEEeC
Confidence 7777654 79999997432 1223456677777776444443
No 153
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.17 E-value=4.8e-10 Score=76.84 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=77.7
Q ss_pred EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~ 131 (216)
+|+|+|||+|..+..++.....+++++|++++++..+++........+++++.+|+ .+... ...+++|+|+++++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA--EELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcCh--hhhcc-ccCCceEEEEEcccee
Confidence 48999999999998888744579999999999999998644444444799999999 66543 1126899999999986
Q ss_pred CCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeee
Q psy17460 132 TRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE 182 (216)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 182 (216)
.. ......+++...+++++ +|.+++.
T Consensus 78 ~~------------------------~~~~~~~l~~~~~~l~~-~g~~~~~ 103 (107)
T cd02440 78 HL------------------------VEDLARFLEEARRLLKP-GGVLVLT 103 (107)
T ss_pred eh------------------------hhHHHHHHHHHHHHcCC-CCEEEEE
Confidence 31 12344566667777888 8888765
No 154
>KOG2187|consensus
Probab=99.17 E-value=2.6e-10 Score=98.18 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=97.8
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEec
Q psy17460 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE 106 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d 106 (216)
|.+....++.+.+.+...+....++.++|+.||||.+++.+++. ..+|+|||++++++.-|+.|+..|+++|.+|++|-
T Consensus 361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ 439 (534)
T ss_pred hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence 66677888888888888777778899999999999999998887 56999999999999999999999999999999996
Q ss_pred cccccccccccc---Cccc-EEEEcCCCCCCCCCCCHHHHHHHhhcCCc---eEEEee
Q psy17460 107 INEKSLDSSVFK---QKVD-TVIMNPPFGTRNCGIDLAFVQYAADISKV---VYSLHK 157 (216)
Q Consensus 107 ~~~~~~~~~~~~---~~~D-~vi~npp~~~~~~~~~~~~~~~~l~~~~~---ly~~~~ 157 (216)
+ .++...... .+-+ +++.||| +.+.+.+++......... +|..+.
T Consensus 440 a--E~~~~sl~~~~~~~~~~v~iiDPp----R~Glh~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 440 A--EDLFPSLLTPCCDSETLVAIIDPP----RKGLHMKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred h--hhccchhcccCCCCCceEEEECCC----cccccHHHHHHHHhccCccceEEEEcC
Confidence 6 343222111 2446 7889999 678888777766555422 665553
No 155
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.16 E-value=7.6e-10 Score=87.50 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=60.1
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH------------hCCCceEEEEeccccccccccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE------------FEITNCDAILFEINEKSLDSSV 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~------------~~~~~v~~~~~d~~~~~~~~~~ 116 (216)
++.+|||+|||.|..+..++.+|. .|+|+|+|+.+++.+...... ..-.+++++++|+ .++....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~--~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF--FALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC--CCCCccc
Confidence 567999999999999999999987 899999999999986432111 0112689999999 7765321
Q ss_pred ccCcccEEEEcCCCCCC
Q psy17460 117 FKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 117 ~~~~~D~vi~npp~~~~ 133 (216)
.+.||.|+-...+++.
T Consensus 111 -~~~fD~i~D~~~~~~l 126 (213)
T TIGR03840 111 -LGPVDAVYDRAALIAL 126 (213)
T ss_pred -CCCcCEEEechhhccC
Confidence 1579999865554433
No 156
>PRK06202 hypothetical protein; Provisional
Probab=99.16 E-value=5.6e-10 Score=89.44 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=71.0
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc----CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCccc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL----GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVD 122 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~----~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D 122 (216)
.++.+|||+|||+|.++..++.. |. .+++|+|+++++++.|+.+.... ++++..+++ ..++.. .++||
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~--~~l~~~--~~~fD 131 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVS--DELVAE--GERFD 131 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEec--cccccc--CCCcc
Confidence 45679999999999998877652 33 58999999999999999886533 456666666 444332 27999
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460 123 TVIMNPPFGTRNCGIDLAFVQYAADISKV 151 (216)
Q Consensus 123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~ 151 (216)
+|+++..+++.........+..+.+..+.
T Consensus 132 ~V~~~~~lhh~~d~~~~~~l~~~~r~~~~ 160 (232)
T PRK06202 132 VVTSNHFLHHLDDAEVVRLLADSAALARR 160 (232)
T ss_pred EEEECCeeecCChHHHHHHHHHHHHhcCe
Confidence 99999999887433234566777666655
No 157
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.15 E-value=3.7e-10 Score=96.57 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 50 GKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
+.+|||++||+|.+++.++.. +..+|+++|+|+++++.+++|++.+++++++++.+|+ ..+... .+.||+|++||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da--~~~l~~--~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA--NALLHE--ERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH--HHHHhh--cCCCCEEEECC
Confidence 468999999999999998765 4468999999999999999999999987788999999 654432 25799999998
Q ss_pred CCCCCCCCCCHHHHHHHhhcC
Q psy17460 129 PFGTRNCGIDLAFVQYAADIS 149 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~~~ 149 (216)
| +. ...++..++...
T Consensus 134 ~-Gs-----~~~~l~~al~~~ 148 (382)
T PRK04338 134 F-GS-----PAPFLDSAIRSV 148 (382)
T ss_pred C-CC-----cHHHHHHHHHHh
Confidence 6 42 234666655443
No 158
>KOG1500|consensus
Probab=99.15 E-value=2.9e-10 Score=93.24 Aligned_cols=78 Identities=32% Similarity=0.444 Sum_probs=68.1
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
.++.++.|||+|||+|.++.++++.|+.+|+++|.+ +|.+.|++.+..|.+. +|.++.|-+++.++| ++.|+|
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-----Ek~Dvi 247 (517)
T KOG1500|consen 174 SDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-----EKVDVI 247 (517)
T ss_pred cccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-----hhccEE
Confidence 346899999999999999999999999999999996 4888899888777665 799999999777776 799999
Q ss_pred EEcCC
Q psy17460 125 IMNPP 129 (216)
Q Consensus 125 i~npp 129 (216)
|+-|.
T Consensus 248 ISEPM 252 (517)
T KOG1500|consen 248 ISEPM 252 (517)
T ss_pred Eeccc
Confidence 98774
No 159
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.15 E-value=9.4e-10 Score=91.73 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=63.9
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
...++.+|||+|||+|.++..+++..+ .+++++|. +.+++.++.++...++. +++++.+|+ .+.+. ..+|+
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~--~~~~~----~~~D~ 218 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI--YKESY----PEADA 218 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc--cCCCC----CCCCE
Confidence 334668999999999999999998865 78999998 78999999999888875 699999999 65443 24699
Q ss_pred EEEcCCCC
Q psy17460 124 VIMNPPFG 131 (216)
Q Consensus 124 vi~npp~~ 131 (216)
|++.-..|
T Consensus 219 v~~~~~lh 226 (306)
T TIGR02716 219 VLFCRILY 226 (306)
T ss_pred EEeEhhhh
Confidence 87644333
No 160
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.14 E-value=8.8e-10 Score=86.48 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=65.1
Q ss_pred CCCEEEEecCCCCHhHHHHhHcC-C-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccc----cCcc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLG-A-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVF----KQKV 121 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~-~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~----~~~~ 121 (216)
+.++|||+||++|..++.++..- . ++|+.+|++++..+.|+.+++..++. +++++.||+ .+...... .++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda--~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA--LEVLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H--HHHHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc--HhhHHHHHhccCCCce
Confidence 67899999999999999998752 2 79999999999999999999999886 799999999 77543211 1479
Q ss_pred cEEEEcCC
Q psy17460 122 DTVIMNPP 129 (216)
Q Consensus 122 D~vi~npp 129 (216)
|+||.|..
T Consensus 123 D~VFiDa~ 130 (205)
T PF01596_consen 123 DFVFIDAD 130 (205)
T ss_dssp EEEEEEST
T ss_pred eEEEEccc
Confidence 99999873
No 161
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.14 E-value=6.1e-10 Score=83.56 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=71.1
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.++.+|||+|||+|.++..++..+. +++|+|+++.+++. .++.....+. ...... .++||+|+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~--~~~~~~--~~~fD~i~~~ 85 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDA--QDPPFP--DGSFDLIICN 85 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEEC--HTHHCH--SSSEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhh--hhhhcc--ccchhhHhhH
Confidence 4788999999999999999988877 99999999999988 1344444444 222222 2799999998
Q ss_pred CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460 128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY 185 (216)
Q Consensus 128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 185 (216)
-.+++.. +...+++...++|+| +|.+++....
T Consensus 86 ~~l~~~~-------------------------d~~~~l~~l~~~Lkp-gG~l~~~~~~ 117 (161)
T PF13489_consen 86 DVLEHLP-------------------------DPEEFLKELSRLLKP-GGYLVISDPN 117 (161)
T ss_dssp SSGGGSS-------------------------HHHHHHHHHHHCEEE-EEEEEEEEEB
T ss_pred HHHhhcc-------------------------cHHHHHHHHHHhcCC-CCEEEEEEcC
Confidence 8776551 244566667777778 7777776654
No 162
>KOG0820|consensus
Probab=99.14 E-value=4.9e-10 Score=89.47 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=80.5
Q ss_pred CcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-
Q psy17460 20 PKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT- 98 (216)
Q Consensus 20 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~- 98 (216)
....++|+.+... ..++.+....+..+++.|||+|.|||.++..+.+.|+ +|+++|+|+.|+....+..+.....
T Consensus 32 fnkd~GQHilkNp---~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~ 107 (315)
T KOG0820|consen 32 FNKDFGQHILKNP---LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSG 107 (315)
T ss_pred cccccchhhhcCH---HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccc
Confidence 3445667665442 2333333333556899999999999999999999976 9999999999999999987655433
Q ss_pred ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
.++++.||+ ..... ..||.||+|.||...
T Consensus 108 kLqV~~gD~--lK~d~----P~fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 108 KLQVLHGDF--LKTDL----PRFDGCVSNLPYQIS 136 (315)
T ss_pred eeeEEeccc--ccCCC----cccceeeccCCcccc
Confidence 699999999 66554 389999999999865
No 163
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.14 E-value=1.3e-09 Score=86.54 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=66.4
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
..+.+|||+|||+|.++..+++.+. .++++|+++.+++.++.++...+..++++..+|+ .+.+... .++||+|+++
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~-~~~~D~i~~~ 119 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV--EDLAEKG-AKSFDVVTCM 119 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH--HHhhcCC-CCCccEEEeh
Confidence 3578999999999999988888765 7999999999999999998877654688999999 6655332 2689999997
Q ss_pred CCCCCC
Q psy17460 128 PPFGTR 133 (216)
Q Consensus 128 pp~~~~ 133 (216)
..+++.
T Consensus 120 ~~l~~~ 125 (224)
T TIGR01983 120 EVLEHV 125 (224)
T ss_pred hHHHhC
Confidence 665543
No 164
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=99.13 E-value=5.3e-09 Score=82.78 Aligned_cols=163 Identities=18% Similarity=0.240 Sum_probs=90.4
Q ss_pred HHHHhhcccCCCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHH
Q psy17460 9 YLQQLTFNFSNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDI 87 (216)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~ 87 (216)
.++++...-+.+...+.| +.|++....+.+.+... ....|++||-+|=+.-.....+....+.+|+.+|+|+.+++.
T Consensus 5 ~~~~i~~~RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~--gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~f 82 (243)
T PF01861_consen 5 KFSEIVKNRPEPDVELDQGYATPETTLRRAALMAER--GDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDF 82 (243)
T ss_dssp HHHHHHTT-----GGGT---B-HHHHHHHHHHHHHT--T-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHH
T ss_pred HHHHHHHcCCCCccccccccccHHHHHHHHHHHHhc--CcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHH
Confidence 444555667888888998 88888777777666654 445799999999665554333333445899999999999999
Q ss_pred HHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc----eEEEeeCcc--h
Q psy17460 88 FIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV----VYSLHKTST--R 161 (216)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~----ly~~~~~~~--~ 161 (216)
.++.+...++ +++.+..|+ .+..+....++||++++||||... +.. -|+.+++..++. .|..+.... .
T Consensus 83 I~~~a~~~gl-~i~~~~~Dl--R~~LP~~~~~~fD~f~TDPPyT~~--G~~-LFlsRgi~~Lk~~g~~gy~~~~~~~~s~ 156 (243)
T PF01861_consen 83 INRVAEEEGL-PIEAVHYDL--RDPLPEELRGKFDVFFTDPPYTPE--GLK-LFLSRGIEALKGEGCAGYFGFTHKEASP 156 (243)
T ss_dssp HHHHHHHHT---EEEE---T--TS---TTTSS-BSEEEE---SSHH--HHH-HHHHHHHHTB-STT-EEEEEE-TTT--H
T ss_pred HHHHHHHcCC-ceEEEEecc--cccCCHHHhcCCCEEEeCCCCCHH--HHH-HHHHHHHHHhCCCCceEEEEEecCcCcH
Confidence 9999999999 599999999 665444344899999999999742 222 277777776654 566665543 4
Q ss_pred HHHHHHHHHhcCccceeeee
Q psy17460 162 ESILKKIQAFKNVEQVDVIA 181 (216)
Q Consensus 162 ~~~~~~~~~~l~~~~g~~~~ 181 (216)
....+.-+.++. .|.++.
T Consensus 157 ~~~~~~Q~~l~~--~gl~i~ 174 (243)
T PF01861_consen 157 DKWLEVQRFLLE--MGLVIT 174 (243)
T ss_dssp HHHHHHHHHHHT--S--EEE
T ss_pred HHHHHHHHHHHH--CCcCHH
Confidence 444433444443 355554
No 165
>PLN02366 spermidine synthase
Probab=99.13 E-value=1.7e-09 Score=89.98 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=65.6
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHh--CC--CceEEEEecccccccccccccCccc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEF--EI--TNCDAILFEINEKSLDSSVFKQKVD 122 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~~D 122 (216)
..+++||++|||+|..+.+++++.. .+|+.+|+|+.+++.|++.+... +. ++++++.+|+ .++......++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da--~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG--VEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH--HHHHhhccCCCCC
Confidence 3578999999999999999988854 68999999999999999987543 22 2799999999 7664332236899
Q ss_pred EEEEcCCCC
Q psy17460 123 TVIMNPPFG 131 (216)
Q Consensus 123 ~vi~npp~~ 131 (216)
+|++|.+-.
T Consensus 168 vIi~D~~dp 176 (308)
T PLN02366 168 AIIVDSSDP 176 (308)
T ss_pred EEEEcCCCC
Confidence 999987543
No 166
>PRK03612 spermidine synthase; Provisional
Probab=99.13 E-value=5.6e-10 Score=99.31 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=65.1
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhh--H-h--CC--CceEEEEecccccccccccccC
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKN--E-F--EI--TNCDAILFEINEKSLDSSVFKQ 119 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~--~-~--~~--~~v~~~~~d~~~~~~~~~~~~~ 119 (216)
.++++|||+|||+|..+.++++++. .+|+++|+|+++++.++++.. . + .. ++++++.+|+ .++... ..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da--~~~l~~-~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA--FNWLRK-LAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH--HHHHHh-CCC
Confidence 4678999999999999999888765 799999999999999999532 1 1 11 3799999999 665432 126
Q ss_pred cccEEEEcCCCCC
Q psy17460 120 KVDTVIMNPPFGT 132 (216)
Q Consensus 120 ~~D~vi~npp~~~ 132 (216)
+||+|++|+|...
T Consensus 373 ~fDvIi~D~~~~~ 385 (521)
T PRK03612 373 KFDVIIVDLPDPS 385 (521)
T ss_pred CCCEEEEeCCCCC
Confidence 8999999988653
No 167
>PRK01581 speE spermidine synthase; Validated
Probab=99.13 E-value=1e-09 Score=92.27 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhh-----hHhC--CCceEEEE
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNK-----NEFE--ITNCDAIL 104 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~-----~~~~--~~~v~~~~ 104 (216)
+.|.++...+. ....+++||++|||+|..+.++++... .+|+++|+|+++++.|+... .... -++++++.
T Consensus 136 YHE~Lvhp~m~--~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi 213 (374)
T PRK01581 136 YHEALVHPIMS--KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV 213 (374)
T ss_pred HHHHHHHHHHH--hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE
Confidence 55666665543 234677999999999999888888754 79999999999999999732 1112 23799999
Q ss_pred ecccccccccccccCcccEEEEcCCCC
Q psy17460 105 FEINEKSLDSSVFKQKVDTVIMNPPFG 131 (216)
Q Consensus 105 ~d~~~~~~~~~~~~~~~D~vi~npp~~ 131 (216)
+|+ .++... ..++||+|++|.|..
T Consensus 214 ~Da--~~fL~~-~~~~YDVIIvDl~DP 237 (374)
T PRK01581 214 CDA--KEFLSS-PSSLYDVIIIDFPDP 237 (374)
T ss_pred CcH--HHHHHh-cCCCccEEEEcCCCc
Confidence 999 776433 226899999998643
No 168
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.12 E-value=2.8e-09 Score=88.70 Aligned_cols=84 Identities=11% Similarity=-0.018 Sum_probs=59.8
Q ss_pred CCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccc-ccccc--cCccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSL-DSSVF--KQKVD 122 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~-~~~~~--~~~~D 122 (216)
++.+|||+|||||..+..++... ..+++++|+|++|++.+..++....-. ++.++++|+ .+. ..... .....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~--~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADF--TQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcc--cchhhhhcccccCCeE
Confidence 56789999999999999888774 368999999999999999987653311 678899999 543 22110 01234
Q ss_pred EEEEcCCCCCCC
Q psy17460 123 TVIMNPPFGTRN 134 (216)
Q Consensus 123 ~vi~npp~~~~~ 134 (216)
++++..++++..
T Consensus 141 ~~~~gs~~~~~~ 152 (301)
T TIGR03438 141 GFFPGSTIGNFT 152 (301)
T ss_pred EEEecccccCCC
Confidence 555666666553
No 169
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.12 E-value=2.4e-10 Score=99.47 Aligned_cols=109 Identities=20% Similarity=0.289 Sum_probs=74.3
Q ss_pred hhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-----CCEEEEEeCChHHHHH
Q psy17460 13 LTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-----ADFCFALECDKEILDI 87 (216)
Q Consensus 13 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-----~~~v~~iD~~~~~~~~ 87 (216)
+++-|+.+..++.+|. ..+.+.+.+.........++.+|+|+|||+|.++..+++.+ +.+|++||.|+.++..
T Consensus 152 tYe~fE~D~vKY~~Ye--~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYE--RAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp HHHHHCC-HHHHHHHH--HHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred cHhhHhcCHHHHHHHH--HHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence 3466777777777776 34544444444432111136799999999999998777664 4799999999999988
Q ss_pred HHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460 88 FIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 88 ~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
.+..++.++.. +|+++.+|. .++... +++|+||+-.
T Consensus 230 l~~~v~~n~w~~~V~vi~~d~--r~v~lp---ekvDIIVSEl 266 (448)
T PF05185_consen 230 LQKRVNANGWGDKVTVIHGDM--REVELP---EKVDIIVSEL 266 (448)
T ss_dssp HHHHHHHTTTTTTEEEEES-T--TTSCHS---S-EEEEEE--
T ss_pred HHHHHHhcCCCCeEEEEeCcc--cCCCCC---CceeEEEEec
Confidence 88877777775 799999999 555443 6999999754
No 170
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.10 E-value=2.1e-10 Score=87.89 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=72.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
+|.+|||+|||.|.+...+........+|+|++++.+..|..+ .+.++++|++ +-.....+++||.||++.
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld--~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLD--EGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHH--HhHhhCCCCCccEEehHh
Confidence 6899999999999999888876557899999999988887766 6789999994 332223348999999987
Q ss_pred CCCCCCCCCCHHHHHHHhhcCCceEEEee
Q psy17460 129 PFGTRNCGIDLAFVQYAADISKVVYSLHK 157 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~ 157 (216)
........ .+.+.+.++.++.....++
T Consensus 84 tLQ~~~~P--~~vL~EmlRVgr~~IVsFP 110 (193)
T PF07021_consen 84 TLQAVRRP--DEVLEEMLRVGRRAIVSFP 110 (193)
T ss_pred HHHhHhHH--HHHHHHHHHhcCeEEEEec
Confidence 66554111 2357777888877444443
No 171
>KOG2730|consensus
Probab=99.08 E-value=1.7e-10 Score=89.42 Aligned_cols=101 Identities=24% Similarity=0.350 Sum_probs=85.3
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEe
Q psy17460 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILF 105 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~ 105 (216)
.-||+.+++.++..+..- ....+|+|.+||-|..++..+.+++ .|++||+||.-+..|++|++-.|++ +|+|++|
T Consensus 75 svTpe~ia~~iA~~v~~~---~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G 150 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVAC---MNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICG 150 (263)
T ss_pred EeccHHHHHHHHHHHHHh---cCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEec
Confidence 567888999998887754 2567899999999999999888877 8999999999999999999999998 7999999
Q ss_pred cccccccccc--cccCcccEEEEcCCCCCC
Q psy17460 106 EINEKSLDSS--VFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 106 d~~~~~~~~~--~~~~~~D~vi~npp~~~~ 133 (216)
|+ ++.... ..+..+|+|+..||++..
T Consensus 151 D~--ld~~~~lq~~K~~~~~vf~sppwggp 178 (263)
T KOG2730|consen 151 DF--LDLASKLKADKIKYDCVFLSPPWGGP 178 (263)
T ss_pred hH--HHHHHHHhhhhheeeeeecCCCCCCc
Confidence 99 665432 222457899999999976
No 172
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.07 E-value=1.3e-09 Score=84.94 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=69.7
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
++.+|||+|||+|.++..++......++|+|+++++++.++.+ +++++.+|+ .+.......++||+|+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~--~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDL--DEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEh--hhcccccCCCCcCEEEEhh
Confidence 5679999999999999888766445789999999999887642 568899999 5421111126899999999
Q ss_pred CCCCCCCCCCHHHHHHHhhcCCceEEE
Q psy17460 129 PFGTRNCGIDLAFVQYAADISKVVYSL 155 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~~~~~ly~~ 155 (216)
++++... ....++...+.++..+..
T Consensus 84 ~l~~~~d--~~~~l~e~~r~~~~~ii~ 108 (194)
T TIGR02081 84 TLQATRN--PEEILDEMLRVGRHAIVS 108 (194)
T ss_pred HhHcCcC--HHHHHHHHHHhCCeEEEE
Confidence 9887621 234566677776654333
No 173
>PTZ00146 fibrillarin; Provisional
Probab=99.07 E-value=3e-09 Score=87.12 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=58.8
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc-cccccCccc
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD-SSVFKQKVD 122 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~~D 122 (216)
...++.+|||+|||+|.++..++.. +. ..|+++|+++.+.+.....+... +|+.++.+|+ .... .....++||
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da--~~p~~y~~~~~~vD 204 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDA--RYPQKYRMLVPMVD 204 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCc--cChhhhhcccCCCC
Confidence 3457889999999999999998886 33 68999999998765555444322 3889999999 4321 111125899
Q ss_pred EEEEcCC
Q psy17460 123 TVIMNPP 129 (216)
Q Consensus 123 ~vi~npp 129 (216)
+|++|.+
T Consensus 205 vV~~Dva 211 (293)
T PTZ00146 205 VIFADVA 211 (293)
T ss_pred EEEEeCC
Confidence 9999885
No 174
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.06 E-value=2.1e-09 Score=91.50 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=76.1
Q ss_pred CEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 51 KTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
.+|||++||+|..++.++.. |..+|+++|+|+++++.+++|++.+++.+++++++|+ ..+.... ..+||+|+.||
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da--~~~l~~~-~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDA--ANVLRYR-NRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH--HHHHHHh-CCCCCEEEeCC
Confidence 58999999999999999887 5689999999999999999999999887799999999 6664331 25799999999
Q ss_pred CCCCCCCCCCHHHHHHHhhcCCc
Q psy17460 129 PFGTRNCGIDLAFVQYAADISKV 151 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~~~~~ 151 (216)
|+.. ..+++.++.....
T Consensus 123 -fGs~-----~~fld~al~~~~~ 139 (374)
T TIGR00308 123 -FGTP-----APFVDSAIQASAE 139 (374)
T ss_pred -CCCc-----HHHHHHHHHhccc
Confidence 6532 2478888766544
No 175
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.04 E-value=5.7e-09 Score=85.56 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=64.7
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhC----CCceEEEEecccccccccccccCccc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFE----ITNCDAILFEINEKSLDSSVFKQKVD 122 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~D 122 (216)
..+++||++|||+|.++..+++.. ..+++++|+++++++.+++++.... .++++++.+|+ .++.... .++||
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~--~~~l~~~-~~~yD 147 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG--FKFLADT-ENTFD 147 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch--HHHHHhC-CCCcc
Confidence 356699999999999998888875 3789999999999999999875432 12688999998 6654321 26899
Q ss_pred EEEEcCCCCC
Q psy17460 123 TVIMNPPFGT 132 (216)
Q Consensus 123 ~vi~npp~~~ 132 (216)
+|++|++...
T Consensus 148 vIi~D~~~~~ 157 (270)
T TIGR00417 148 VIIVDSTDPV 157 (270)
T ss_pred EEEEeCCCCC
Confidence 9999987543
No 176
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.02 E-value=5.1e-09 Score=83.09 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=58.3
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH------------hCCCceEEEEeccccccccccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE------------FEITNCDAILFEINEKSLDSSV 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~------------~~~~~v~~~~~d~~~~~~~~~~ 116 (216)
++.+|||+|||.|..+..++.+|. .|+|+|+++.+++.+...... ..-.+++++++|+ .++....
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~--~~l~~~~ 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF--FALTAAD 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc--cCCCccc
Confidence 567999999999999999999987 899999999999986431110 0112689999999 7775432
Q ss_pred ccCcccEEEEcCCC
Q psy17460 117 FKQKVDTVIMNPPF 130 (216)
Q Consensus 117 ~~~~~D~vi~npp~ 130 (216)
. ..||.|+--..|
T Consensus 114 ~-~~fd~v~D~~~~ 126 (218)
T PRK13255 114 L-ADVDAVYDRAAL 126 (218)
T ss_pred C-CCeeEEEehHhH
Confidence 1 478999854433
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.02 E-value=6.4e-09 Score=81.91 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=67.1
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEE-ecccccccccccccCcccE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEIT-NCDAIL-FEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~-~d~~~~~~~~~~~~~~~D~ 123 (216)
.++++|||+|++.|..++.++..- ..+++++|++++..+.|++|++..++. .+.++. +|+ .+.......++||+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda--l~~l~~~~~~~fDl 135 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA--LDVLSRLLDGSFDL 135 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH--HHHHHhccCCCccE
Confidence 478899999999999998888753 378999999999999999999999987 488888 698 77654323389999
Q ss_pred EEEcC
Q psy17460 124 VIMNP 128 (216)
Q Consensus 124 vi~np 128 (216)
||.|.
T Consensus 136 iFIDa 140 (219)
T COG4122 136 VFIDA 140 (219)
T ss_pred EEEeC
Confidence 99976
No 178
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=99.02 E-value=1.5e-09 Score=88.54 Aligned_cols=104 Identities=26% Similarity=0.367 Sum_probs=82.6
Q ss_pred CCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460 19 NPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI 97 (216)
Q Consensus 19 ~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~ 97 (216)
.++..++| |-....+.+.+++.+... ++..|+|+|+|+|.++..++..+ .+++++|+|+.+++..+......+
T Consensus 3 k~kk~~gQnFL~~~~~~~~Iv~~~~~~----~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~- 76 (262)
T PF00398_consen 3 KPKKSLGQNFLVDPNIADKIVDALDLS----EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNP- 76 (262)
T ss_dssp SC-CGCTSSEEEHHHHHHHHHHHHTCG----TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCS-
T ss_pred CCCCCCCcCeeCCHHHHHHHHHhcCCC----CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcc-
Confidence 45677887 666778888888877543 78899999999999999999997 699999999999999998776333
Q ss_pred CceEEEEeccccccccccc-ccCcccEEEEcCCCC
Q psy17460 98 TNCDAILFEINEKSLDSSV-FKQKVDTVIMNPPFG 131 (216)
Q Consensus 98 ~~v~~~~~d~~~~~~~~~~-~~~~~D~vi~npp~~ 131 (216)
+++++.+|+ ..+.... .......|++|.||.
T Consensus 77 -~~~vi~~D~--l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 77 -NVEVINGDF--LKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp -SEEEEES-T--TTSCGGGHCSSSEEEEEEEETGT
T ss_pred -cceeeecch--hccccHHhhcCCceEEEEEeccc
Confidence 899999999 7765431 113678999999994
No 179
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.02 E-value=5.8e-09 Score=77.69 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=90.6
Q ss_pred HHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHH
Q psy17460 9 YLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILD 86 (216)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~ 86 (216)
+++=+..|..+|+.-=...||+..+++.|++.+... +|.-|||+|.|||.++-.++.+|- ..++++|.|++...
T Consensus 12 e~~F~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pe----sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~ 87 (194)
T COG3963 12 EISFFKGWIDNPRTVGAILPSSSILARKMASVIDPE----SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVC 87 (194)
T ss_pred HHHHHHHHhcCCceeeeecCCcHHHHHHHHhccCcc----cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHH
Confidence 344443556666666667999999999999888764 888999999999999999888863 78999999999998
Q ss_pred HHHHhhhHhCCCceEEEEeccccccccc---ccccCcccEEEEcCCCCCC
Q psy17460 87 IFIDNKNEFEITNCDAILFEINEKSLDS---SVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~~~D~vi~npp~~~~ 133 (216)
...+... .+++++||+ .++.. +.++..||.|||..|+-..
T Consensus 88 ~L~~~~p-----~~~ii~gda--~~l~~~l~e~~gq~~D~viS~lPll~~ 130 (194)
T COG3963 88 HLNQLYP-----GVNIINGDA--FDLRTTLGEHKGQFFDSVISGLPLLNF 130 (194)
T ss_pred HHHHhCC-----Cccccccch--hhHHHHHhhcCCCeeeeEEeccccccC
Confidence 8777654 577999999 66541 2344689999999998765
No 180
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.01 E-value=9.5e-09 Score=89.93 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=70.5
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
..+|.+|||+|||.|.-+..++.. + .+.|++.|+++..++.++.|++..|+.++.+...|. ..+.... .+.||.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~--~~~~~~~-~~~fD~I 187 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG--RVFGAAL-PETFDAI 187 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch--hhhhhhc-hhhcCeE
Confidence 358899999999999999888775 2 368999999999999999999999998899999999 5543211 1579999
Q ss_pred EEcCCCCCC
Q psy17460 125 IMNPPFGTR 133 (216)
Q Consensus 125 i~npp~~~~ 133 (216)
+.|+|..-.
T Consensus 188 LvDaPCSG~ 196 (470)
T PRK11933 188 LLDAPCSGE 196 (470)
T ss_pred EEcCCCCCC
Confidence 999998854
No 181
>KOG1541|consensus
Probab=98.97 E-value=1.4e-08 Score=79.02 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc
Q psy17460 32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS 111 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 111 (216)
++.++.+.++.. +...+.-|||+|||||..+..+...| ..++|+|||+.|++.|...-- .-+++.+|.- .-
T Consensus 35 em~eRaLELLal--p~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~-----egdlil~DMG-~G 105 (270)
T KOG1541|consen 35 EMAERALELLAL--PGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVEREL-----EGDLILCDMG-EG 105 (270)
T ss_pred HHHHHHHHHhhC--CCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhh-----hcCeeeeecC-CC
Confidence 344444444432 22246689999999999999888888 489999999999999987321 2368888883 33
Q ss_pred cccccccCcccEEEEcCCCCCC---CCCCC------HHH---HHHHhhcCCc-eEEEeeCcc--hHHHHHHHHHhcCccc
Q psy17460 112 LDSSVFKQKVDTVIMNPPFGTR---NCGID------LAF---VQYAADISKV-VYSLHKTST--RESILKKIQAFKNVEQ 176 (216)
Q Consensus 112 ~~~~~~~~~~D~vi~npp~~~~---~~~~~------~~~---~~~~l~~~~~-ly~~~~~~~--~~~~~~~~~~~l~~~~ 176 (216)
+|+.. ++||.+|+-....+. ++..+ ..| ++.++..+.+ ++-+++.+. .+.+...+..- +. +
T Consensus 106 lpfrp--GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a-GF-~ 181 (270)
T KOG1541|consen 106 LPFRP--GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA-GF-G 181 (270)
T ss_pred CCCCC--CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh-cc-C
Confidence 45544 899999964444333 11111 123 3445555555 555555443 55566555554 77 6
Q ss_pred eeeeeeee
Q psy17460 177 VDVIAEMK 184 (216)
Q Consensus 177 g~~~~~~~ 184 (216)
|-++++..
T Consensus 182 GGlvVd~P 189 (270)
T KOG1541|consen 182 GGLVVDWP 189 (270)
T ss_pred Cceeeecc
Confidence 66666554
No 182
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.95 E-value=3.9e-09 Score=82.34 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=74.7
Q ss_pred CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCcccEEEEc
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVDTVIMN 127 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D~vi~n 127 (216)
...+||+|||.|.+.+.+|...+ ..++|+|+....+..+...+...+++|+.++.+|+ ..+... ...+++|.|+.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da--~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDA--RELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-C--TTHHHHHSTTTSEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccH--HHHHhhcccCCchheEEEe
Confidence 33899999999999999888766 89999999999999999999999999999999999 663321 223799999988
Q ss_pred CCCCCC------CCCCCHHHH---HHHhhcCCceEEEe
Q psy17460 128 PPFGTR------NCGIDLAFV---QYAADISKVVYSLH 156 (216)
Q Consensus 128 pp~~~~------~~~~~~~~~---~~~l~~~~~ly~~~ 156 (216)
-|=.+. ++-....++ ...+++++.++..-
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 776654 333445555 45566666554433
No 183
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.95 E-value=2.1e-08 Score=77.76 Aligned_cols=69 Identities=26% Similarity=0.248 Sum_probs=51.2
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc------ccccC
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS------SVFKQ 119 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~~ 119 (216)
.++.+|||+|||+|.++..++... ..+|+++|+++.+ ...+++++.+|+ .+... ....+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~--~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDF--TDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeC--CChhHHHHHHHHhCCC
Confidence 578899999999999998877653 3689999999854 123688999998 54320 01125
Q ss_pred cccEEEEcCC
Q psy17460 120 KVDTVIMNPP 129 (216)
Q Consensus 120 ~~D~vi~npp 129 (216)
+||+|+++++
T Consensus 98 ~~D~V~~~~~ 107 (188)
T TIGR00438 98 KVDVVMSDAA 107 (188)
T ss_pred CccEEEcCCC
Confidence 7999999864
No 184
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.1e-08 Score=86.87 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC---CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460 32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA---DFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN 108 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~---~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 108 (216)
...+.+...++ ...+|.+|||++++.|.-+..+++... ..|+++|+++.-+...+.|++..|+.|+.++..|.
T Consensus 142 d~sS~l~a~~L---~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~- 217 (355)
T COG0144 142 DEASQLPALVL---DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA- 217 (355)
T ss_pred CHHHHHHHHHc---CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc-
Confidence 45555555444 346899999999999999988887643 35699999999999999999999998889999998
Q ss_pred cccccccccc-CcccEEEEcCCCCCC
Q psy17460 109 EKSLDSSVFK-QKVDTVIMNPPFGTR 133 (216)
Q Consensus 109 ~~~~~~~~~~-~~~D~vi~npp~~~~ 133 (216)
...+..... ++||.|+.|+|....
T Consensus 218 -~~~~~~~~~~~~fD~iLlDaPCSg~ 242 (355)
T COG0144 218 -RRLAELLPGGEKFDRILLDAPCSGT 242 (355)
T ss_pred -ccccccccccCcCcEEEECCCCCCC
Confidence 554432211 359999999999875
No 185
>PLN02823 spermine synthase
Probab=98.91 E-value=2.2e-08 Score=84.22 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhC----CCceEEEEecc
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFE----ITNCDAILFEI 107 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~----~~~v~~~~~d~ 107 (216)
+.+.++...... ...+++||.+|+|.|..+.++++.. ..+|+++|+|+++++.|++.+...+ -++++++.+|+
T Consensus 89 YhE~l~h~~l~~--~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da 166 (336)
T PLN02823 89 YHESLVHPALLH--HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA 166 (336)
T ss_pred HHHHHHhHHHhh--CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh
Confidence 445555443332 2356799999999999999988864 3789999999999999999886432 23799999999
Q ss_pred cccccccccccCcccEEEEcCC
Q psy17460 108 NEKSLDSSVFKQKVDTVIMNPP 129 (216)
Q Consensus 108 ~~~~~~~~~~~~~~D~vi~npp 129 (216)
..+... ..++||+|++|.+
T Consensus 167 --~~~L~~-~~~~yDvIi~D~~ 185 (336)
T PLN02823 167 --RAELEK-RDEKFDVIIGDLA 185 (336)
T ss_pred --HHHHhh-CCCCccEEEecCC
Confidence 776533 2368999999964
No 186
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.91 E-value=9.4e-09 Score=81.73 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=80.7
Q ss_pred CEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccC-cccEEEEcC
Q psy17460 51 KTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQ-KVDTVIMNP 128 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-~~D~vi~np 128 (216)
..+||||||.|.+.+.+|+..+ ..++|||+....+..|...+...+++|+.++++|+ ..+......+ +.|-|+.|-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA--~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA--VEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH--HHHHHhcCCCCCeeEEEEEC
Confidence 5899999999999999999877 89999999999999999999999998999999999 7765443334 999999987
Q ss_pred CCCCC------CCCCCHHHHH---HHhhcCCceEEE
Q psy17460 129 PFGTR------NCGIDLAFVQ---YAADISKVVYSL 155 (216)
Q Consensus 129 p~~~~------~~~~~~~~~~---~~l~~~~~ly~~ 155 (216)
|=.+. ++-....+++ +.|.+++.++..
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 77665 2233444444 445555544443
No 187
>PRK04148 hypothetical protein; Provisional
Probab=98.89 E-value=5.8e-08 Score=70.66 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=56.2
Q ss_pred CCCCCCEEEEecCCCCH-hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 46 NDIDGKTVLDLGCGSGI-LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~-~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
...++.+|+|+|||+|. ++..+++.|. .|+++|+++++++.++.+ .++++.+|. ++.....- +.+|+|
T Consensus 13 ~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDl--f~p~~~~y-~~a~li 81 (134)
T PRK04148 13 EKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDL--FNPNLEIY-KNAKLI 81 (134)
T ss_pred ccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcC--CCCCHHHH-hcCCEE
Confidence 33467899999999996 8888888876 999999999988887665 468999999 76654321 578999
Q ss_pred EEc
Q psy17460 125 IMN 127 (216)
Q Consensus 125 i~n 127 (216)
++-
T Consensus 82 ysi 84 (134)
T PRK04148 82 YSI 84 (134)
T ss_pred EEe
Confidence 853
No 188
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.89 E-value=3.4e-08 Score=75.63 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=73.8
Q ss_pred ccCCHHHHHHHHHHHHh--hcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhC--CC-ce
Q psy17460 27 YHTPPHLAATILHTIQN--NYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFE--IT-NC 100 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~--~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~--~~-~v 100 (216)
|+....+...+...... .....++.+|||+|||+|..++.++.. +...|+..|.++ .++.++.|++.|+ .. ++
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccc
Confidence 44444444444443210 112357899999999999999999988 567999999998 9999999999876 22 68
Q ss_pred EEEEecccccccc--cccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCcccee
Q psy17460 101 DAILFEINEKSLD--SSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVD 178 (216)
Q Consensus 101 ~~~~~d~~~~~~~--~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~ 178 (216)
.+...|. .+.. ......+||+|++.--.. .....+.+++.....+++ ++.
T Consensus 100 ~v~~L~W--g~~~~~~~~~~~~~D~IlasDv~Y-------------------------~~~~~~~L~~tl~~ll~~-~~~ 151 (173)
T PF10294_consen 100 SVRPLDW--GDELDSDLLEPHSFDVILASDVLY-------------------------DEELFEPLVRTLKRLLKP-NGK 151 (173)
T ss_dssp EEEE--T--TS-HHHHHHS-SSBSEEEEES--S--------------------------GGGHHHHHHHHHHHBTT--TT
T ss_pred cCcEEEe--cCcccccccccccCCEEEEecccc-------------------------hHHHHHHHHHHHHHHhCC-CCE
Confidence 8888887 3321 111225899999744321 123345566666777777 666
Q ss_pred eeeeee
Q psy17460 179 VIAEMK 184 (216)
Q Consensus 179 ~~~~~~ 184 (216)
+++-+.
T Consensus 152 vl~~~~ 157 (173)
T PF10294_consen 152 VLLAYK 157 (173)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 555433
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.88 E-value=4.3e-08 Score=79.02 Aligned_cols=79 Identities=11% Similarity=0.174 Sum_probs=66.5
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccc-----cC
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVF-----KQ 119 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~-----~~ 119 (216)
.+.++|||+|+++|..++.++.. +. ++++++|.+++.++.|+.++...|+. +|+++.||+ .+...... .+
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a--~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA--LPVLDQMIEDGKYHG 155 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH--HHHHHHHHhccccCC
Confidence 36789999999999999988875 23 69999999999999999999999976 799999999 77543321 25
Q ss_pred cccEEEEcC
Q psy17460 120 KVDTVIMNP 128 (216)
Q Consensus 120 ~~D~vi~np 128 (216)
+||+||.|.
T Consensus 156 ~fD~iFiDa 164 (247)
T PLN02589 156 TFDFIFVDA 164 (247)
T ss_pred cccEEEecC
Confidence 899999987
No 190
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.86 E-value=1.3e-08 Score=83.65 Aligned_cols=82 Identities=17% Similarity=0.129 Sum_probs=49.9
Q ss_pred CCEEEEecCCCCHh-HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-CCC-ceEEEEecccccccccc---cccCcccE
Q psy17460 50 GKTVLDLGCGSGIL-TFGSILLGADFCFALECDKEILDIFIDNKNEF-EIT-NCDAILFEINEKSLDSS---VFKQKVDT 123 (216)
Q Consensus 50 ~~~vlD~g~GtG~~-~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~-~v~~~~~d~~~~~~~~~---~~~~~~D~ 123 (216)
..++||+|||..++ .+..++...++++|.|+|+..++.|+.|+..| ++. .|+++...- ....+. ...+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~--~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN--PDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S--T-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC--ccccchhhhcccceeeE
Confidence 45899999998875 45544443589999999999999999999999 776 688876643 221111 12368999
Q ss_pred EEEcCCCCCC
Q psy17460 124 VIMNPPFGTR 133 (216)
Q Consensus 124 vi~npp~~~~ 133 (216)
++|||||+..
T Consensus 181 tmCNPPFy~s 190 (299)
T PF05971_consen 181 TMCNPPFYSS 190 (299)
T ss_dssp EEE-----SS
T ss_pred EecCCccccC
Confidence 9999999987
No 191
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.84 E-value=6.6e-08 Score=79.72 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc
Q psy17460 32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE 109 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 109 (216)
.....+...+.. ..++..|||+++|.|.-+..++.. + .+.+++.|+++.-+...+.+++..|..++.+...|.
T Consensus 71 d~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~-- 145 (283)
T PF01189_consen 71 DESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA-- 145 (283)
T ss_dssp HHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH--
T ss_pred cccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc--
Confidence 455555554443 358899999999999999887775 3 389999999999999999999999998899888999
Q ss_pred cccccccccCcccEEEEcCCCCCC
Q psy17460 110 KSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 110 ~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
...........||.|+.|+|....
T Consensus 146 ~~~~~~~~~~~fd~VlvDaPCSg~ 169 (283)
T PF01189_consen 146 RKLDPKKPESKFDRVLVDAPCSGL 169 (283)
T ss_dssp HHHHHHHHTTTEEEEEEECSCCCG
T ss_pred ccccccccccccchhhcCCCccch
Confidence 665322222469999999999875
No 192
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.82 E-value=1.6e-08 Score=76.86 Aligned_cols=71 Identities=27% Similarity=0.312 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
...+.|+|+|+|.++..++.. +.+|+++|.+|...+.|.+|+.-.|..|++++.||+ .+..+ +..|+|+|-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA--~~y~f----e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA--RDYDF----ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc--ccccc----cccceeHHH
Confidence 368999999999999998888 679999999999999999999888888999999999 66665 477999883
No 193
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.82 E-value=8.3e-08 Score=76.12 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=60.6
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH--h----------CCCceEEEEecccccccccc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE--F----------EITNCDAILFEINEKSLDSS 115 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~--~----------~~~~v~~~~~d~~~~~~~~~ 115 (216)
.++.+||.+|||.|.-...++.+|. .|+|+|+++.+++.+...... . ...+|++++||+ .++...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf--F~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF--FELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T--TTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc--ccCChh
Confidence 4667999999999999999999986 899999999999998432111 0 112689999999 887754
Q ss_pred cccCcccEEEEcCCCCCC
Q psy17460 116 VFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 116 ~~~~~~D~vi~npp~~~~ 133 (216)
.. ++||+|+=.-.|...
T Consensus 113 ~~-g~fD~iyDr~~l~Al 129 (218)
T PF05724_consen 113 DV-GKFDLIYDRTFLCAL 129 (218)
T ss_dssp CH-HSEEEEEECSSTTTS
T ss_pred hc-CCceEEEEecccccC
Confidence 32 479999865555544
No 194
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.82 E-value=1.7e-08 Score=89.07 Aligned_cols=106 Identities=21% Similarity=0.250 Sum_probs=85.2
Q ss_pred cccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-C----CCEEEEEeCChHHHHHHHHhhhHh
Q psy17460 21 KVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-G----ADFCFALECDKEILDIFIDNKNEF 95 (216)
Q Consensus 21 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~----~~~v~~iD~~~~~~~~~~~~~~~~ 95 (216)
....++|.||.++.+.|+..+... +..+|+|+.||+|.+...+... + ...++|.|+++....+|+.|+-..
T Consensus 162 ~k~~GEfyTP~~v~~liv~~l~~~----~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh 237 (489)
T COG0286 162 GKEAGEFYTPREVSELIVELLDPE----PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH 237 (489)
T ss_pred CCCCCccCChHHHHHHHHHHcCCC----CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh
Confidence 444699999999999999988762 5569999999999987665543 1 256899999999999999999998
Q ss_pred CCC-ceEEEEeccccccccccc---ccCcccEEEEcCCCCC
Q psy17460 96 EIT-NCDAILFEINEKSLDSSV---FKQKVDTVIMNPPFGT 132 (216)
Q Consensus 96 ~~~-~v~~~~~d~~~~~~~~~~---~~~~~D~vi~npp~~~ 132 (216)
+++ ++.+..+|. ..-+... ..+.||.|++||||..
T Consensus 238 gi~~~~~i~~~dt--l~~~~~~~~~~~~~~D~viaNPPf~~ 276 (489)
T COG0286 238 GIEGDANIRHGDT--LSNPKHDDKDDKGKFDFVIANPPFSG 276 (489)
T ss_pred CCCcccccccccc--ccCCcccccCCccceeEEEeCCCCCc
Confidence 886 578888888 6554331 2367999999999973
No 195
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.81 E-value=2e-08 Score=82.85 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=63.2
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccccc--Ccc
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFK--QKV 121 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~~ 121 (216)
...++..++|.+||.|..+..+++..+ .+|+|+|.|+++++.++..+.. ..+++++.+|+ .++...... .++
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f--~~l~~~l~~~~~~v 91 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNF--SNLKEVLAEGLGKV 91 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCH--HHHHHHHHcCCCcc
Confidence 334778999999999999999988753 7999999999999999998865 34899999999 665332211 279
Q ss_pred cEEEEcC
Q psy17460 122 DTVIMNP 128 (216)
Q Consensus 122 D~vi~np 128 (216)
|.|++|.
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9999863
No 196
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.81 E-value=9.7e-08 Score=75.86 Aligned_cols=100 Identities=11% Similarity=0.059 Sum_probs=69.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhh------------HhCCCceEEEEecccccccccc-
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKN------------EFEITNCDAILFEINEKSLDSS- 115 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~------------~~~~~~v~~~~~d~~~~~~~~~- 115 (216)
++.+||++|||.|.-...++.+|. .|+|+|+|+.+++.+.+... ...-.+++++++|+ +++...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~--f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI--FNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC--cCCCccc
Confidence 567999999999999999999987 79999999999999766211 01111799999999 887532
Q ss_pred cccCcccEEEEcCCCCCCCCCCCHH---HHHHHhhcCCc
Q psy17460 116 VFKQKVDTVIMNPPFGTRNCGIDLA---FVQYAADISKV 151 (216)
Q Consensus 116 ~~~~~~D~vi~npp~~~~~~~~~~~---~~~~~l~~~~~ 151 (216)
...+.||+|+---.|.......-.+ .+...+.+++.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 1225899998666666552222223 33444555544
No 197
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.81 E-value=3e-08 Score=83.26 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhcC-CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-------CC--C-ce
Q psy17460 32 HLAATILHTIQNNYN-DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF-------EI--T-NC 100 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~-~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-------~~--~-~v 100 (216)
++...++......+. ..++.+|||+|||-|.-..-....+...++|+|++...++.|+.+.+.. .. . ..
T Consensus 44 wvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a 123 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA 123 (331)
T ss_dssp HHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence 555566666554322 2267899999999999888888777789999999999999999988321 11 1 46
Q ss_pred EEEEeccccccccc----ccccCcccEEEEcCCCCCC
Q psy17460 101 DAILFEINEKSLDS----SVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 101 ~~~~~d~~~~~~~~----~~~~~~~D~vi~npp~~~~ 133 (216)
.++.+|+ ..... .....+||+|-|...+|..
T Consensus 124 ~f~~~D~--f~~~l~~~~~~~~~~FDvVScQFalHY~ 158 (331)
T PF03291_consen 124 EFIAADC--FSESLREKLPPRSRKFDVVSCQFALHYA 158 (331)
T ss_dssp EEEESTT--CCSHHHCTSSSTTS-EEEEEEES-GGGG
T ss_pred heecccc--ccchhhhhccccCCCcceeehHHHHHHh
Confidence 7888888 54321 1112489999999999876
No 198
>KOG3010|consensus
Probab=98.78 E-value=1.4e-08 Score=80.04 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=66.0
Q ss_pred EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCC
Q psy17460 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~ 130 (216)
.++|+|||+|..++.++.+ ..+|+|+|+++.|++.+++.....-+. ..+....+. ..+.-. .+++|+|+|-..+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~--v~L~g~--e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM--VDLLGG--EESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccc--ccccCC--CcceeeehhhhhH
Confidence 8999999999667777777 569999999999999998876554332 234444444 333322 3899999999999
Q ss_pred CCCCCCCCHHHHHHHhhcCCc
Q psy17460 131 GTRNCGIDLAFVQYAADISKV 151 (216)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~ 151 (216)
|+++-..-.+..+++|+..+.
T Consensus 111 HWFdle~fy~~~~rvLRk~Gg 131 (261)
T KOG3010|consen 111 HWFDLERFYKEAYRVLRKDGG 131 (261)
T ss_pred HhhchHHHHHHHHHHcCCCCC
Confidence 988433333344455555443
No 199
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.75 E-value=2e-07 Score=76.48 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=66.6
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhC----CCceEEEEecccccccccccccCcccE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFE----ITNCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
..++||-+|.|.|..+.+++++.. .+++.+|||+..++.+++.+.... -++++++.+|. .++..... ++||+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg--~~~v~~~~-~~fDv 152 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG--VEFLRDCE-EKFDV 152 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH--HHHHHhCC-CcCCE
Confidence 447999999999999999999976 899999999999999999886654 34799999999 88875542 48999
Q ss_pred EEEcCC
Q psy17460 124 VIMNPP 129 (216)
Q Consensus 124 vi~npp 129 (216)
|++|..
T Consensus 153 Ii~D~t 158 (282)
T COG0421 153 IIVDST 158 (282)
T ss_pred EEEcCC
Confidence 998753
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.74 E-value=4.6e-07 Score=69.92 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=73.1
Q ss_pred CCcccCccccCCHHHHH-HHHHHHHhhcCCC--CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhH
Q psy17460 19 NPKVHLEQYHTPPHLAA-TILHTIQNNYNDI--DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNE 94 (216)
Q Consensus 19 ~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~--~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~ 94 (216)
|.+.++....+.+.+.. ++++.+... +.. .+.+++|+|+|-|.-++.++-..+ .+++.+|....-+...+.....
T Consensus 16 N~~~NLt~~~~~~~~~~~Hi~DSL~~~-~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~ 94 (184)
T PF02527_consen 16 NKKINLTSIRDPEEIWERHILDSLALL-PFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE 94 (184)
T ss_dssp HHCSSS-S--SHHHHHHHHHHHHHGGG-GCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CceeeeccCCCHHHHHHHHHHHHHHhh-hhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH
Confidence 55666666667777776 444444432 322 233799999999999999887755 7899999999999999999999
Q ss_pred hCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 95 FEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 95 ~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.+++|++++.+.++ +.... ..||+|++
T Consensus 95 L~L~nv~v~~~R~E--~~~~~---~~fd~v~a 121 (184)
T PF02527_consen 95 LGLSNVEVINGRAE--EPEYR---ESFDVVTA 121 (184)
T ss_dssp HT-SSEEEEES-HH--HTTTT---T-EEEEEE
T ss_pred hCCCCEEEEEeeec--ccccC---CCccEEEe
Confidence 99989999999994 42222 79999997
No 201
>KOG1975|consensus
Probab=98.74 E-value=4.9e-08 Score=79.94 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC--CC----ceEEEEe
Q psy17460 32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE--IT----NCDAILF 105 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~--~~----~v~~~~~ 105 (216)
++...++..... ++..++|+|||-|.-.+..-+.|.+.++|+||..-.++.|+++..... .+ .+.|+.+
T Consensus 105 wIKs~LI~~y~~-----~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~ 179 (389)
T KOG1975|consen 105 WIKSVLINLYTK-----RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA 179 (389)
T ss_pred HHHHHHHHHHhc-----cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe
Confidence 455555555554 678899999999999888888877899999999999999999875432 11 3689999
Q ss_pred cccccccccc----cccCcccEEEEcCCCCCC
Q psy17460 106 EINEKSLDSS----VFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 106 d~~~~~~~~~----~~~~~~D~vi~npp~~~~ 133 (216)
|+ ...... ....+||+|-|.-.+|..
T Consensus 180 Dc--~~~~l~d~~e~~dp~fDivScQF~~HYa 209 (389)
T KOG1975|consen 180 DC--FKERLMDLLEFKDPRFDIVSCQFAFHYA 209 (389)
T ss_pred cc--chhHHHHhccCCCCCcceeeeeeeEeee
Confidence 99 542211 122449999999999875
No 202
>KOG2915|consensus
Probab=98.73 E-value=6e-07 Score=72.04 Aligned_cols=125 Identities=15% Similarity=0.120 Sum_probs=92.5
Q ss_pred HHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccccc
Q psy17460 40 TIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSV 116 (216)
Q Consensus 40 ~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~ 116 (216)
++..++...+|.+|+|-|+|+|+++.++++. ++ ++++.+|..+...+.|.+.++..++. +++++.-|+ -..-+..
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV--c~~GF~~ 173 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV--CGSGFLI 173 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec--ccCCccc
Confidence 3444445579999999999999999998886 45 89999999999999999999998887 899999999 5544433
Q ss_pred ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460 117 FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF 171 (216)
Q Consensus 117 ~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~ 171 (216)
+...+|.||.|.|=.+ ...-+..++++..+. +.+.-+.+.+.+.+.|...
T Consensus 174 ks~~aDaVFLDlPaPw----~AiPha~~~lk~~g~-r~csFSPCIEQvqrtce~l 223 (314)
T KOG2915|consen 174 KSLKADAVFLDLPAPW----EAIPHAAKILKDEGG-RLCSFSPCIEQVQRTCEAL 223 (314)
T ss_pred cccccceEEEcCCChh----hhhhhhHHHhhhcCc-eEEeccHHHHHHHHHHHHH
Confidence 3478999999988443 333455666666553 3334445566666555444
No 203
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.70 E-value=3.2e-07 Score=72.18 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCC--CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCC
Q psy17460 5 HIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDID--GKTVLDLGCGSGILTFGSILLGA-DFCFALECD 81 (216)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~ 81 (216)
...+.+.++ |...++....+++++..+.+........... +++++|+|+|.|.-++.++-..+ .+|+-+|..
T Consensus 26 ~Y~~lL~~w-----N~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~ 100 (215)
T COG0357 26 AYVELLLKW-----NKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESL 100 (215)
T ss_pred HHHHHHHHh-----hHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccC
Confidence 334455555 5666677777777776655544443334334 58999999999999999885544 679999999
Q ss_pred hHHHHHHHHhhhHhCCCceEEEEecccccccccccccCc-ccEEEE
Q psy17460 82 KEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK-VDTVIM 126 (216)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~-~D~vi~ 126 (216)
..-+...+......+++|++++++.+ .++... .. ||+|.+
T Consensus 101 ~Kk~~FL~~~~~eL~L~nv~i~~~Ra--E~~~~~---~~~~D~vts 141 (215)
T COG0357 101 GKKIAFLREVKKELGLENVEIVHGRA--EEFGQE---KKQYDVVTS 141 (215)
T ss_pred chHHHHHHHHHHHhCCCCeEEehhhH--hhcccc---cccCcEEEe
Confidence 99999999999999998899999999 555432 23 999987
No 204
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.68 E-value=8e-09 Score=80.77 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=69.4
Q ss_pred CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCC
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP 129 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp 129 (216)
=+++||+|||||..+..+... ...+.|+|||.+|++.|...--- =++.++++ ..+......+.||+|+.-.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y-----D~L~~Aea--~~Fl~~~~~er~DLi~AaD- 196 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY-----DTLYVAEA--VLFLEDLTQERFDLIVAAD- 196 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch-----HHHHHHHH--HHHhhhccCCcccchhhhh-
Confidence 469999999999999988877 45899999999999998775221 13455555 4443222337899998633
Q ss_pred CCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 130 FGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
++-..+ ..+.++..+.+.|.| +|.+.+...
T Consensus 197 ---------------Vl~YlG---------~Le~~~~~aa~~L~~-gGlfaFSvE 226 (287)
T COG4976 197 ---------------VLPYLG---------ALEGLFAGAAGLLAP-GGLFAFSVE 226 (287)
T ss_pred ---------------HHHhhc---------chhhHHHHHHHhcCC-CceEEEEec
Confidence 222222 345566667888888 888887544
No 205
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.67 E-value=4e-07 Score=73.57 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC----CceEEEEecc
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI----TNCDAILFEI 107 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~----~~v~~~~~d~ 107 (216)
+.+.++...... ..++++||-+|.|.|..+.++.+... .+++++|+|+.+++.|++.+..... ++++++.+|+
T Consensus 62 y~e~l~h~~~~~--~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 62 YHEMLVHPPLLL--HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp HHHHHHHHHHHH--SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred HHHHHhhhHhhc--CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 445555444433 23688999999999999999998864 7999999999999999998765322 2799999999
Q ss_pred cccccccccccCcccEEEEcCCC
Q psy17460 108 NEKSLDSSVFKQKVDTVIMNPPF 130 (216)
Q Consensus 108 ~~~~~~~~~~~~~~D~vi~npp~ 130 (216)
..+......++||+|+.|.+-
T Consensus 140 --~~~l~~~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 140 --RKFLKETQEEKYDVIIVDLTD 160 (246)
T ss_dssp --HHHHHTSSST-EEEEEEESSS
T ss_pred --HHHHHhccCCcccEEEEeCCC
Confidence 887654322389999998764
No 206
>KOG2899|consensus
Probab=98.66 E-value=2.2e-07 Score=73.35 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=43.9
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHh
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEF 95 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~ 95 (216)
....++.+||+||-+|.+++.+++. ++..++|+|||+..++.|++++...
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 3467889999999999999999987 5678999999999999999997653
No 207
>KOG2361|consensus
Probab=98.64 E-value=2.1e-07 Score=73.38 Aligned_cols=74 Identities=19% Similarity=0.356 Sum_probs=56.8
Q ss_pred EEEEecCCCCHhHHHHhHcCC---CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 52 TVLDLGCGSGILTFGSILLGA---DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~~~~---~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
+||++|||.|.....+.+..+ -.|++.|.+|++++..+++...... ++.....|+...++......+++|+|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~-~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES-RVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh-hhcccceeccchhccCCCCcCccceEEE
Confidence 799999999999999888643 4899999999999999998766553 6777777774333332333378999887
No 208
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.63 E-value=3.5e-07 Score=72.94 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=37.2
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHH
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDI 87 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~ 87 (216)
..++++|||+|||||.++..+++.|+.+|+|+|++++++..
T Consensus 73 ~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 73 DVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 35788999999999999999999988899999999988765
No 209
>PRK00536 speE spermidine synthase; Provisional
Probab=98.62 E-value=9.7e-07 Score=71.67 Aligned_cols=112 Identities=16% Similarity=0.038 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC--C--CceEEEEeccc
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE--I--TNCDAILFEIN 108 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~--~--~~v~~~~~d~~ 108 (216)
+.|.|++..+. .+..+++||=+|.|.|..+.+++++. .+|+.+|||+++++.+++.+.... . ++++++.. +
T Consensus 58 YHEmLvHppl~--~h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~- 132 (262)
T PRK00536 58 ESELLAHMGGC--TKKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L- 132 (262)
T ss_pred HHHHHHHHHHh--hCCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h-
Confidence 45556555554 34567899999999999999999995 499999999999999999654432 2 26777752 2
Q ss_pred ccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCc
Q psy17460 109 EKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTS 159 (216)
Q Consensus 109 ~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~ 159 (216)
.+. ..++||+||+|..|... -.+.++++|..++ +++.+..+
T Consensus 133 -~~~----~~~~fDVIIvDs~~~~~----fy~~~~~~L~~~G-i~v~Qs~s 173 (262)
T PRK00536 133 -LDL----DIKKYDLIICLQEPDIH----KIDGLKRMLKEDG-VFISVAKH 173 (262)
T ss_pred -hhc----cCCcCCEEEEcCCCChH----HHHHHHHhcCCCc-EEEECCCC
Confidence 211 11689999999654321 1122344555554 45554444
No 210
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.57 E-value=4e-07 Score=80.90 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=78.3
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.+..+||+|||.|.+...+|...+ ..++|+|+....+..+...+...+++|+.++.+|+ ..+......+++|.|++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~--~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL--DLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHhcCcccccEEEEE
Confidence 466999999999999999998866 89999999999999998888888888999999988 443322333789999999
Q ss_pred CCCCCC------CCCCCHHH---HHHHhhcCCceEE
Q psy17460 128 PPFGTR------NCGIDLAF---VQYAADISKVVYS 154 (216)
Q Consensus 128 pp~~~~------~~~~~~~~---~~~~l~~~~~ly~ 154 (216)
-|=.+. ++-....+ +...+++++.++.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 887775 22233333 3445555554443
No 211
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.57 E-value=1.3e-06 Score=68.55 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=77.5
Q ss_pred EEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCC
Q psy17460 53 VLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130 (216)
Q Consensus 53 vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~ 130 (216)
|+|+||..|.+++.+++.+. .+++++|+++..++.|+.++...++. +++++.+|- ++..... +..|.|+..-.=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG--L~~l~~~--e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG--LEVLKPG--EDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG--GGG--GG--G---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc--ccccCCC--CCCCEEEEecCC
Confidence 68999999999999999987 78999999999999999999999976 699999998 7755332 347888853210
Q ss_pred CCCCCCCCHHHHHHHhhcCCc--eEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 131 GTRNCGIDLAFVQYAADISKV--VYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~--ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
+ ..-.+.++........ -+.+.|......+ ++||.. +|+.+.+..
T Consensus 77 G----~lI~~ILe~~~~~~~~~~~lILqP~~~~~~L----R~~L~~-~gf~I~~E~ 123 (205)
T PF04816_consen 77 G----ELIIEILEAGPEKLSSAKRLILQPNTHAYEL----RRWLYE-NGFEIIDED 123 (205)
T ss_dssp H----HHHHHHHHHTGGGGTT--EEEEEESS-HHHH----HHHHHH-TTEEEEEEE
T ss_pred H----HHHHHHHHhhHHHhccCCeEEEeCCCChHHH----HHHHHH-CCCEEEEeE
Confidence 0 0012233333333322 4666666555554 666666 677766554
No 212
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=98.54 E-value=2e-06 Score=68.40 Aligned_cols=120 Identities=19% Similarity=0.168 Sum_probs=68.3
Q ss_pred CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh----CC-----CceEEEEecccccccccccccCcc
Q psy17460 51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF----EI-----TNCDAILFEINEKSLDSSVFKQKV 121 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~----~~-----~~v~~~~~d~~~~~~~~~~~~~~~ 121 (216)
.+|||..+|-|.-++.++..|+ +|+++|.||-+..+.+.-++.. .. .+++++.+|. .++.. ...++|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~--~~~L~-~~~~s~ 152 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA--LEYLR-QPDNSF 152 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C--CCHCC-CHSS--
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH--HHHHh-hcCCCC
Confidence 3899999999999988888876 8999999998876666543332 11 2699999999 77654 334799
Q ss_pred cEEEEcCCCCCCCCCCC----HHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460 122 DTVIMNPPFGTRNCGID----LAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD 186 (216)
Q Consensus 122 D~vi~npp~~~~~~~~~----~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 186 (216)
|+|++||.|....+.+. .+.+...... ..+.+++++.+.+.-+. ++|+..+..
T Consensus 153 DVVY~DPMFp~~~ksa~vkk~m~~lr~L~~~---------d~~~~ell~~Alr~Ar~---RVVvKrp~~ 209 (234)
T PF04445_consen 153 DVVYFDPMFPERKKSALVKKEMRVLRDLAGH---------DPDAEELLEEALRVARK---RVVVKRPRK 209 (234)
T ss_dssp SEEEE--S-----TTTT-SHHHHHHHHHHSH---------HTTGGGGHHHHHHH-SS---EEEEEEETT
T ss_pred CEEEECCCCCCcccccccccchHHHHHhhcc---------CcCHHHHHHHHHHhcCc---EEEEecCCC
Confidence 99999999998743332 2333332211 22456677788777333 667665543
No 213
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=98.54 E-value=4.5e-07 Score=72.86 Aligned_cols=165 Identities=16% Similarity=0.254 Sum_probs=113.6
Q ss_pred HHHHhhcccCCCcccCcc-ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHH
Q psy17460 9 YLQQLTFNFSNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILD 86 (216)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~ 86 (216)
....+...-+.|...+.| |.||+....+.+-+... ++..|+.|+-+| -.-..+++++..+ +.+|..+|||+..++
T Consensus 113 kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~R--GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~ 189 (354)
T COG1568 113 KFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSR--GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIK 189 (354)
T ss_pred HHHHHHhcCCCcchhcccccccccceeeeeeeeccc--cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHH
Confidence 334444445556666666 78887655544433332 566899999999 5555566666654 589999999999999
Q ss_pred HHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCc------eEEEeeCcc
Q psy17460 87 IFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKV------VYSLHKTST 160 (216)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~------ly~~~~~~~ 160 (216)
...+.++..+.+|++.+..|. .+..++....+||+.+.|||+... .-.-|+.+.+..++. .+.....++
T Consensus 190 fi~k~aee~g~~~ie~~~~Dl--r~plpe~~~~kFDvfiTDPpeTi~---alk~FlgRGI~tLkg~~~aGyfgiT~ress 264 (354)
T COG1568 190 FIEKVAEELGYNNIEAFVFDL--RNPLPEDLKRKFDVFITDPPETIK---ALKLFLGRGIATLKGEGCAGYFGITRRESS 264 (354)
T ss_pred HHHHHHHHhCccchhheeehh--cccChHHHHhhCCeeecCchhhHH---HHHHHHhccHHHhcCCCccceEeeeecccc
Confidence 999999999998899999999 776666555899999999998643 122355555444433 666666666
Q ss_pred hHHHHHHHHHhcCccceeeeee
Q psy17460 161 RESILKKIQAFKNVEQVDVIAE 182 (216)
Q Consensus 161 ~~~~~~~~~~~l~~~~g~~~~~ 182 (216)
.....+.-+-.+.. -|+++.+
T Consensus 265 idkW~eiQr~lIn~-~gvVITd 285 (354)
T COG1568 265 IDKWREIQRILINE-MGVVITD 285 (354)
T ss_pred HHHHHHHHHHHHHh-cCeeeHh
Confidence 66665544434444 5666654
No 214
>KOG1663|consensus
Probab=98.52 E-value=2e-06 Score=67.51 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=73.7
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc----cccCc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS----VFKQK 120 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~----~~~~~ 120 (216)
..++++||+|.=||..++..|..-+ ++|+++|++++.++.+....+..++. +++++++++ .+-..+ ...+.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a--~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA--LESLDELLADGESGT 149 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch--hhhHHHHHhcCCCCc
Confidence 4789999999999999988777633 79999999999999999999999987 799999999 664332 22378
Q ss_pred ccEEEEcCCCCCCCCCCCHHHHHHHhhcCC
Q psy17460 121 VDTVIMNPPFGTRNCGIDLAFVQYAADISK 150 (216)
Q Consensus 121 ~D~vi~npp~~~~~~~~~~~~~~~~l~~~~ 150 (216)
||.+|.|. ++.....++++++.+.+
T Consensus 150 fDfaFvDa-----dK~nY~~y~e~~l~Llr 174 (237)
T KOG1663|consen 150 FDFAFVDA-----DKDNYSNYYERLLRLLR 174 (237)
T ss_pred eeEEEEcc-----chHHHHHHHHHHHhhcc
Confidence 99999976 33333344555544443
No 215
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.45 E-value=1e-06 Score=69.17 Aligned_cols=104 Identities=12% Similarity=0.016 Sum_probs=69.8
Q ss_pred cCCHHHHHHHHHHHHhhcCC--CCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHh-CCC-ceEE
Q psy17460 28 HTPPHLAATILHTIQNNYND--IDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEF-EIT-NCDA 102 (216)
Q Consensus 28 ~t~~~~~~~~~~~~~~~~~~--~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~-~~~-~v~~ 102 (216)
|....+.-.+.+++..--+. .++.++||+|.|.-++--.+-.+ .....+|.|+|+-.+..|+.++..| +++ .+++
T Consensus 55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~l 134 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRL 134 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeE
Confidence 33344555555555433222 34568999999877764332222 2368999999999999999999888 565 4777
Q ss_pred EEeccccccccccc---ccCcccEEEEcCCCCCC
Q psy17460 103 ILFEINEKSLDSSV---FKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 103 ~~~d~~~~~~~~~~---~~~~~D~vi~npp~~~~ 133 (216)
+...- ....++. ..+.||+++||||||..
T Consensus 135 r~qk~--~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 135 RRQKD--SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred EeccC--ccccccccccccceeeeEecCCCcchh
Confidence 66554 4444332 23789999999999975
No 216
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=9.7e-07 Score=67.63 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=66.6
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
...|++|||+|+|+|..++.+++.|+..|++.|++|........|+..|+. ++.+...|. .--+ ..||+++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~--~g~~-----~~~Dl~La 148 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADL--IGSP-----PAFDLLLA 148 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccc--cCCC-----cceeEEEe
Confidence 457899999999999999999999999999999999999999999999998 899999999 6522 68999986
Q ss_pred cCCC
Q psy17460 127 NPPF 130 (216)
Q Consensus 127 npp~ 130 (216)
..-|
T Consensus 149 gDlf 152 (218)
T COG3897 149 GDLF 152 (218)
T ss_pred ecee
Confidence 4443
No 217
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.39 E-value=6e-06 Score=66.43 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=70.8
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
...+..+|+|+|+|+|.++..+++..+ .+++..|+ |..++.++. .++++++.||+ .+ +.. . +|++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~--f~-~~P---~-~D~~ 162 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDF--FD-PLP---V-ADVY 162 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-T--TT-CCS---S-ESEE
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccH--Hh-hhc---c-ccce
Confidence 444567999999999999999988866 89999999 888888888 23899999999 73 222 4 9999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccc--eeeeeee
Q psy17460 125 IMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQ--VDVIAEM 183 (216)
Q Consensus 125 i~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~ 183 (216)
++.--+|... ......+++.+...|.| + |++++-.
T Consensus 163 ~l~~vLh~~~-----------------------d~~~~~iL~~~~~al~p-g~~g~llI~e 199 (241)
T PF00891_consen 163 LLRHVLHDWS-----------------------DEDCVKILRNAAAALKP-GKDGRLLIIE 199 (241)
T ss_dssp EEESSGGGS------------------------HHHHHHHHHHHHHHSEE-CTTEEEEEEE
T ss_pred eeehhhhhcc-----------------------hHHHHHHHHHHHHHhCC-CCCCeEEEEe
Confidence 9876666441 12234566667777777 5 6666533
No 218
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.38 E-value=1.5e-06 Score=64.12 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=50.8
Q ss_pred EEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460 52 TVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 107 (216)
+++|+|||+|..+..++..++ .+++++|.++.+++.++.++..++.++++++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 489999999999999888876 58999999999999999999988877788888888
No 219
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.37 E-value=5.6e-06 Score=64.41 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhH--cCC-CEEEEEeCChHHHHHHHHhhhHh------------
Q psy17460 31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSIL--LGA-DFCFALECDKEILDIFIDNKNEF------------ 95 (216)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~--~~~-~~v~~iD~~~~~~~~~~~~~~~~------------ 95 (216)
-.++..+++.....+....+-.++|++||.|.+...+.. ... ..|+|.|+|++++++|++|+...
T Consensus 33 VRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL 112 (246)
T PF11599_consen 33 VRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREEL 112 (246)
T ss_dssp HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHH
Confidence 367777888887765555667999999999998755433 333 79999999999999999995432
Q ss_pred ------------------------------CCCceEEEEeccccccccc---ccccCcccEEEEcCCCCCC-CCCCCHHH
Q psy17460 96 ------------------------------EITNCDAILFEINEKSLDS---SVFKQKVDTVIMNPPFGTR-NCGIDLAF 141 (216)
Q Consensus 96 ------------------------------~~~~v~~~~~d~~~~~~~~---~~~~~~~D~vi~npp~~~~-~~~~~~~~ 141 (216)
+.....+...|+ ++... .......|+|+.|.||+.+ +....
T Consensus 113 ~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDv--f~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~--- 187 (246)
T PF11599_consen 113 RELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADV--FDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGE--- 187 (246)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--T--T-HHHHHHHHTT---SEEEEE--CCCSSSTTS----
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecc--cCCchhhhhccCCCCCEEEecCCCcccccccCC---
Confidence 111466788888 66322 1122347999999999988 33221
Q ss_pred HHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeee
Q psy17460 142 VQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIA 181 (216)
Q Consensus 142 ~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 181 (216)
-+.+....++......|.. ++.+++
T Consensus 188 --------------~~~~p~~~ml~~l~~vLp~-~sVV~v 212 (246)
T PF11599_consen 188 --------------GSGGPVAQMLNSLAPVLPE-RSVVAV 212 (246)
T ss_dssp ----------------HHHHHHHHHHHHCCS-T-T-EEEE
T ss_pred --------------CCCCcHHHHHHHHHhhCCC-CcEEEE
Confidence 0111344566667777743 555554
No 220
>KOG1661|consensus
Probab=98.36 E-value=7.9e-06 Score=63.36 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC--CEEEEEeCChHHHHHHHHhhhHhC--------CC-
Q psy17460 31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA--DFCFALECDKEILDIFIDNKNEFE--------IT- 98 (216)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~--~~v~~iD~~~~~~~~~~~~~~~~~--------~~- 98 (216)
.++...+++.+...+ .+|.+.||+|+|||.++..++.. ++ ..++|||.-+++++..++|+...- ++
T Consensus 66 p~mha~~le~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 66 PHMHATALEYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred hHHHHHHHHHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 466667777776432 48999999999999999777743 33 344999999999999999987643 12
Q ss_pred -ceEEEEecccccccccccccCcccEEEEcC
Q psy17460 99 -NCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 99 -~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
++.++.||. ....... .+||.|.+-.
T Consensus 144 ~~l~ivvGDg--r~g~~e~--a~YDaIhvGA 170 (237)
T KOG1661|consen 144 GELSIVVGDG--RKGYAEQ--APYDAIHVGA 170 (237)
T ss_pred CceEEEeCCc--cccCCcc--CCcceEEEcc
Confidence 688999999 6655443 7999999854
No 221
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=5.4e-06 Score=65.56 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=61.3
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
..+++++||+|+.||.++..+.+.|+.+|+|+|...+++..--++-.. -+.....|+ ..+......+..|+++|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~r----V~~~E~tN~--r~l~~~~~~~~~d~~v~ 150 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPR----VIVLERTNV--RYLTPEDFTEKPDLIVI 150 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCc----EEEEecCCh--hhCCHHHcccCCCeEEE
Confidence 468999999999999999999999999999999998777653333211 244555666 55554444468899999
Q ss_pred cCCCCCC
Q psy17460 127 NPPFGTR 133 (216)
Q Consensus 127 npp~~~~ 133 (216)
+.+|...
T Consensus 151 DvSFISL 157 (245)
T COG1189 151 DVSFISL 157 (245)
T ss_pred EeehhhH
Confidence 9999743
No 222
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.32 E-value=7.9e-06 Score=65.61 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=76.0
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
...++||+|+|.|..+..++... .+|++.|+|+.|....++ .| ++++ |. .++... +.+||+|.|--
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg---~~vl--~~--~~w~~~--~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KG---FTVL--DI--DDWQQT--DFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CC---CeEE--eh--hhhhcc--CCceEEEeehh
Confidence 45689999999999999998874 589999999988655433 33 3433 33 223222 25899998722
Q ss_pred CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCccccccc
Q psy17460 129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHK 195 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 195 (216)
.++++ ..+..+++..++.|+| +|++++...++...+..+..
T Consensus 160 ------------vLDRc-------------~~P~~LL~~i~~~l~p-~G~lilAvVlP~~pyVE~~~ 200 (265)
T PF05219_consen 160 ------------VLDRC-------------DRPLTLLRDIRRALKP-NGRLILAVVLPFRPYVEFGG 200 (265)
T ss_pred ------------hhhcc-------------CCHHHHHHHHHHHhCC-CCEEEEEEEecccccEEcCC
Confidence 22222 2445688888889999 99999988888877776655
No 223
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.32 E-value=4e-06 Score=70.06 Aligned_cols=133 Identities=11% Similarity=0.109 Sum_probs=93.0
Q ss_pred cccCCHHH--HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhH-----hCC
Q psy17460 26 QYHTPPHL--AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNE-----FEI 97 (216)
Q Consensus 26 ~~~t~~~~--~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~-----~~~ 97 (216)
||.|..+. .|.++.-...- ...-.+||-+|.|.|....++.++. ..+++-+|+||.|++.++++.-. ..+
T Consensus 266 QfsTrDe~RYhEsLV~pals~--~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf 343 (508)
T COG4262 266 QFSTRDEYRYHESLVYPALSS--VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSF 343 (508)
T ss_pred eeeechhhhhhheeeeccccc--ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCc
Confidence 56665543 34444333321 1244699999999999999999985 48999999999999999965322 222
Q ss_pred --CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCcc
Q psy17460 98 --TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVE 175 (216)
Q Consensus 98 --~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~ 175 (216)
++++++..|+ .++.... .+.||.||.|.|-.... ..+++|+. ++...+++.|++
T Consensus 344 ~dpRv~Vv~dDA--f~wlr~a-~~~fD~vIVDl~DP~tp-------------s~~rlYS~-------eFY~ll~~~l~e- 399 (508)
T COG4262 344 SDPRVTVVNDDA--FQWLRTA-ADMFDVVIVDLPDPSTP-------------SIGRLYSV-------EFYRLLSRHLAE- 399 (508)
T ss_pred cCCeeEEEeccH--HHHHHhh-cccccEEEEeCCCCCCc-------------chhhhhhH-------HHHHHHHHhcCc-
Confidence 2799999999 9987543 36999999988744320 01124443 455667888888
Q ss_pred ceeeeeeee
Q psy17460 176 QVDVIAEMK 184 (216)
Q Consensus 176 ~g~~~~~~~ 184 (216)
+|.++.+.+
T Consensus 400 ~Gl~VvQag 408 (508)
T COG4262 400 TGLMVVQAG 408 (508)
T ss_pred CceEEEecC
Confidence 999998887
No 224
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.30 E-value=3.7e-06 Score=65.56 Aligned_cols=108 Identities=9% Similarity=0.038 Sum_probs=65.7
Q ss_pred CCCEEEEecCCCCHh----HHHHhHc-----C-CCEEEEEeCChHHHHHHHHhhhH-------------------hC---
Q psy17460 49 DGKTVLDLGCGSGIL----TFGSILL-----G-ADFCFALECDKEILDIFIDNKNE-------------------FE--- 96 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~----~~~~~~~-----~-~~~v~~iD~~~~~~~~~~~~~~~-------------------~~--- 96 (216)
+.-+||.+||+||-= ++.+... + .-+|+|.|+|+.+++.|+.-.-. .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 456999999999973 3333331 1 14999999999999999874100 01
Q ss_pred -C-----CceEEEEecccccc-cccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHH
Q psy17460 97 -I-----TNCDAILFEINEKS-LDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQ 169 (216)
Q Consensus 97 -~-----~~v~~~~~d~~~~~-~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~ 169 (216)
+ +.|+|...|. .+ .+.. +.||+|+|---+ +.+.......+++.+.
T Consensus 111 ~v~~~lr~~V~F~~~NL--~~~~~~~---~~fD~I~CRNVl-----------------------IYF~~~~~~~vl~~l~ 162 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNL--LDPDPPF---GRFDLIFCRNVL-----------------------IYFDPETQQRVLRRLH 162 (196)
T ss_dssp TE-HHHHTTEEEEE--T--T-S---------EEEEEE-SSG-----------------------GGS-HHHHHHHHHHHG
T ss_pred eEChHHcCceEEEeccc--CCCCccc---CCccEEEecCEE-----------------------EEeCHHHHHHHHHHHH
Confidence 1 1689999999 77 3322 799999994433 2344455677888889
Q ss_pred HhcCccceeeeeeeec
Q psy17460 170 AFKNVEQVDVIAEMKY 185 (216)
Q Consensus 170 ~~l~~~~g~~~~~~~~ 185 (216)
..|.| +|.+++-..-
T Consensus 163 ~~L~p-gG~L~lG~sE 177 (196)
T PF01739_consen 163 RSLKP-GGYLFLGHSE 177 (196)
T ss_dssp GGEEE-EEEEEE-TT-
T ss_pred HHcCC-CCEEEEecCc
Confidence 99999 9999984443
No 225
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.29 E-value=3.1e-05 Score=63.88 Aligned_cols=109 Identities=14% Similarity=0.063 Sum_probs=74.6
Q ss_pred CCEEEEecCCCCHh--H--HHHhHcC-----CCEEEEEeCChHHHHHHHHhhhH-----------------------hC-
Q psy17460 50 GKTVLDLGCGSGIL--T--FGSILLG-----ADFCFALECDKEILDIFIDNKNE-----------------------FE- 96 (216)
Q Consensus 50 ~~~vlD~g~GtG~~--~--~~~~~~~-----~~~v~~iD~~~~~~~~~~~~~~~-----------------------~~- 96 (216)
.-+||..||+||-= + +.+.+.. ..+|+|+|+|+.+++.|+...-. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 36999999999973 3 3333321 24799999999999999886211 01
Q ss_pred ------C-CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHH
Q psy17460 97 ------I-TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQ 169 (216)
Q Consensus 97 ------~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~ 169 (216)
+ ..|+|...|. .+.++.. .+.||+|+|--- ++.+.......+++.+.
T Consensus 196 ~~v~~~lr~~V~F~~~NL--~~~~~~~-~~~fD~I~cRNv-----------------------liyF~~~~~~~vl~~l~ 249 (287)
T PRK10611 196 VRVRQELANYVDFQQLNL--LAKQWAV-PGPFDAIFCRNV-----------------------MIYFDKTTQERILRRFV 249 (287)
T ss_pred EEEChHHHccCEEEcccC--CCCCCcc-CCCcceeeHhhH-----------------------HhcCCHHHHHHHHHHHH
Confidence 1 1578999999 6643221 168999998432 23344456678888889
Q ss_pred HhcCccceeeeeeeec
Q psy17460 170 AFKNVEQVDVIAEMKY 185 (216)
Q Consensus 170 ~~l~~~~g~~~~~~~~ 185 (216)
+.|+| +|.+++-+.-
T Consensus 250 ~~L~p-gG~L~lG~sE 264 (287)
T PRK10611 250 PLLKP-DGLLFAGHSE 264 (287)
T ss_pred HHhCC-CcEEEEeCcc
Confidence 99999 9988885543
No 226
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.29 E-value=4.6e-06 Score=65.37 Aligned_cols=114 Identities=14% Similarity=0.062 Sum_probs=77.2
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
...+.||.|||.|.++..++..-+.+|..+|..+..++.|++.+......-.++++.-. .++.+.. .+||+|-+.=
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL--Q~f~P~~--~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL--QDFTPEE--GKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G--GG----T--T-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH--hhccCCC--CcEeEEEehH
Confidence 35699999999999998776665689999999999999999877653222467888888 6665442 6999998843
Q ss_pred CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCcc
Q psy17460 129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQS 190 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 190 (216)
...+. +..+.-.+++.|++.|+| +|.+++..+......
T Consensus 131 ~lghL-----------------------TD~dlv~fL~RCk~~L~~-~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 131 CLGHL-----------------------TDEDLVAFLKRCKQALKP-NGVIVVKENVSSSGF 168 (218)
T ss_dssp -GGGS------------------------HHHHHHHHHHHHHHEEE-EEEEEEEEEEESSSE
T ss_pred hhccC-----------------------CHHHHHHHHHHHHHhCcC-CcEEEEEecCCCCCC
Confidence 32222 222455677888999999 999999888655443
No 227
>KOG1122|consensus
Probab=98.29 E-value=7.6e-06 Score=69.47 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=71.6
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
.+.+|.+|||++|..|.-+.++|.. +.+.|++-|.+.+.+...+.|+...|+.+.-+.+.|. .+++.....++||.
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~--~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG--REFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCc--ccccccccCcccce
Confidence 4568999999999999988766553 3478999999999999999999999998888999999 77664333358999
Q ss_pred EEEcCCCCC
Q psy17460 124 VIMNPPFGT 132 (216)
Q Consensus 124 vi~npp~~~ 132 (216)
|+.|.|..-
T Consensus 316 VLLDAPCSG 324 (460)
T KOG1122|consen 316 VLLDAPCSG 324 (460)
T ss_pred eeecCCCCC
Confidence 999999877
No 228
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.28 E-value=2.6e-06 Score=66.85 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=52.4
Q ss_pred hhcCCCCCCEEEEecCCCCHhHHHHhH-cCCCEEEEEeCChHHHHHHHHhhhH-------hCCC--ceEEEEeccccccc
Q psy17460 43 NNYNDIDGKTVLDLGCGSGILTFGSIL-LGADFCFALECDKEILDIFIDNKNE-------FEIT--NCDAILFEINEKSL 112 (216)
Q Consensus 43 ~~~~~~~~~~vlD~g~GtG~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~~~~-------~~~~--~v~~~~~d~~~~~~ 112 (216)
..++..++++.+|+|||.|...+.++. .+..+++|||+.+...+.|....+. .+.. ++++..+|+ .+.
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf--l~~ 113 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF--LDP 113 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T--TTH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc--ccc
Confidence 344556788999999999999876554 4567799999999998887764432 2332 689999999 664
Q ss_pred cccc-ccCcccEEEEcCC
Q psy17460 113 DSSV-FKQKVDTVIMNPP 129 (216)
Q Consensus 113 ~~~~-~~~~~D~vi~npp 129 (216)
.... .-...|+|++|--
T Consensus 114 ~~~~~~~s~AdvVf~Nn~ 131 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNT 131 (205)
T ss_dssp HHHHHHGHC-SEEEE--T
T ss_pred HhHhhhhcCCCEEEEecc
Confidence 4221 0135799999863
No 229
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.24 E-value=3.4e-05 Score=62.88 Aligned_cols=107 Identities=12% Similarity=0.034 Sum_probs=78.8
Q ss_pred CCEEEEecCCCCH----hHHHHhHcC------CCEEEEEeCChHHHHHHHHhhhH-----h----------------C--
Q psy17460 50 GKTVLDLGCGSGI----LTFGSILLG------ADFCFALECDKEILDIFIDNKNE-----F----------------E-- 96 (216)
Q Consensus 50 ~~~vlD~g~GtG~----~~~~~~~~~------~~~v~~iD~~~~~~~~~~~~~~~-----~----------------~-- 96 (216)
.-+||.+||+||- +++.+.+.+ .-+|+|.|||..+++.|+.-.-. . +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999996 333344433 26899999999999988874211 0 1
Q ss_pred -----C-CceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHH
Q psy17460 97 -----I-TNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQA 170 (216)
Q Consensus 97 -----~-~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~ 170 (216)
+ ..|.|-..|. ..-.+. .+.||+|+| +++.+.+...+...++..+..
T Consensus 177 ~v~~~ir~~V~F~~~NL--l~~~~~--~~~fD~IfC-----------------------RNVLIYFd~~~q~~il~~f~~ 229 (268)
T COG1352 177 RVKEELRKMVRFRRHNL--LDDSPF--LGKFDLIFC-----------------------RNVLIYFDEETQERILRRFAD 229 (268)
T ss_pred EEChHHhcccEEeecCC--CCCccc--cCCCCEEEE-----------------------cceEEeeCHHHHHHHHHHHHH
Confidence 1 1478888888 655521 268999998 347777888889999999999
Q ss_pred hcCccceeeeeeee
Q psy17460 171 FKNVEQVDVIAEMK 184 (216)
Q Consensus 171 ~l~~~~g~~~~~~~ 184 (216)
.|++ +|.+++=+.
T Consensus 230 ~L~~-gG~LflG~s 242 (268)
T COG1352 230 SLKP-GGLLFLGHS 242 (268)
T ss_pred HhCC-CCEEEEccC
Confidence 9999 999998333
No 230
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=5.1e-05 Score=59.16 Aligned_cols=83 Identities=18% Similarity=0.064 Sum_probs=55.9
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS 114 (216)
Q Consensus 37 ~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 114 (216)
+.......--..++.+|+|+||..|..+..+++. ++ ..|+|+|+.| ....+++.++++|+.+.+...
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----------~~~~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----------MKPIPGVIFLQGDITDEDTLE 101 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----------cccCCCceEEeeeccCccHHH
Confidence 3343333312346789999999999999888876 33 5699999988 233347999999993322221
Q ss_pred c----cccCcccEEEEcCCC
Q psy17460 115 S----VFKQKVDTVIMNPPF 130 (216)
Q Consensus 115 ~----~~~~~~D~vi~npp~ 130 (216)
. ....++|+|++|+.=
T Consensus 102 ~l~~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMAP 121 (205)
T ss_pred HHHHHcCCCCcceEEecCCC
Confidence 1 122457999988754
No 231
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.20 E-value=2.1e-05 Score=61.34 Aligned_cols=125 Identities=11% Similarity=0.076 Sum_probs=83.0
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCce-EEEEeccccccccc
Q psy17460 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNC-DAILFEINEKSLDS 114 (216)
Q Consensus 37 ~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~ 114 (216)
+++.+...++. .+.+|||+|||||.-+..++...+ ......|.+++........+...+.+|+ ..+.-|+....++.
T Consensus 14 Il~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 14 ILEVLKQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 44444443321 333699999999999999988866 6778999999998888887777777654 46777873332333
Q ss_pred cc----ccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecC
Q psy17460 115 SV----FKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYD 186 (216)
Q Consensus 115 ~~----~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 186 (216)
.. ..++||+|+|--..|.+. -...+.+++.+.+.|++ +|.+++--.|.
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p-----------------------~~~~~~lf~~a~~~L~~-gG~L~~YGPF~ 144 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISP-----------------------WSAVEGLFAGAARLLKP-GGLLFLYGPFN 144 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcC-----------------------HHHHHHHHHHHHHhCCC-CCEEEEeCCcc
Confidence 21 236899999976666442 12234566667777777 77766644443
No 232
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.19 E-value=1.9e-05 Score=58.41 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=56.9
Q ss_pred CCCCEEEEecCCCCHhHHHHhH-----cCCCEEEEEeCChHHHHHHHHhhhHhC--C-CceEEEEecccccccccccccC
Q psy17460 48 IDGKTVLDLGCGSGILTFGSIL-----LGADFCFALECDKEILDIFIDNKNEFE--I-TNCDAILFEINEKSLDSSVFKQ 119 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~-----~~~~~v~~iD~~~~~~~~~~~~~~~~~--~-~~v~~~~~d~~~~~~~~~~~~~ 119 (216)
.+...|+|+|||.|.++..++. ....+|+|+|.++..++.+....+..+ . .++.+..++. ...... .
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI--ADESSS---D 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch--hhhccc---C
Confidence 4677999999999999999888 434799999999999999999888776 3 2577777776 433221 4
Q ss_pred cccEEEE
Q psy17460 120 KVDTVIM 126 (216)
Q Consensus 120 ~~D~vi~ 126 (216)
..++++.
T Consensus 99 ~~~~~vg 105 (141)
T PF13679_consen 99 PPDILVG 105 (141)
T ss_pred CCeEEEE
Confidence 5666664
No 233
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.18 E-value=1.1e-05 Score=62.12 Aligned_cols=72 Identities=24% Similarity=0.219 Sum_probs=46.6
Q ss_pred CCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-----c-c--cc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-----S-V--FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~-~--~~ 118 (216)
.+.+|||+||++|.++..+++++ ...|+|+|+.+. ...+++..+.+|+ .+... . . ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~--~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDI--TNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGG--EEEEHSHHGGGSHGTTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeeccc--chhhHHHhhhhhccccc
Confidence 45899999999999999999987 489999999874 1223567777776 43211 1 1 11
Q ss_pred CcccEEEEcCCCCCC
Q psy17460 119 QKVDTVIMNPPFGTR 133 (216)
Q Consensus 119 ~~~D~vi~npp~~~~ 133 (216)
+++|+|+||......
T Consensus 90 ~~~dlv~~D~~~~~~ 104 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVS 104 (181)
T ss_dssp CSESEEEE-------
T ss_pred cCcceeccccccCCC
Confidence 589999999854443
No 234
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.15 E-value=6.6e-05 Score=58.80 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=64.6
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.+..++|+||-.|.++..+.+.+. ..+++.|+++..++.|.+++..+++. .++...+|- ....... ..+|.|+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg--l~~l~~~--d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG--LAVLELE--DEIDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC--ccccCcc--CCcCEEEE
Confidence 455699999999999999999876 89999999999999999999998876 799999998 6655432 47999986
Q ss_pred cC
Q psy17460 127 NP 128 (216)
Q Consensus 127 np 128 (216)
.-
T Consensus 92 AG 93 (226)
T COG2384 92 AG 93 (226)
T ss_pred eC
Confidence 43
No 235
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.11 E-value=1.3e-05 Score=60.56 Aligned_cols=74 Identities=12% Similarity=-0.027 Sum_probs=50.2
Q ss_pred EEEeCChHHHHHHHHhhhHhC---CCceEEEEecccccccccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCc
Q psy17460 76 FALECDKEILDIFIDNKNEFE---ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKV 151 (216)
Q Consensus 76 ~~iD~~~~~~~~~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ 151 (216)
.|+|+|++|++.|+++..... ..+++++.+|+ .+++... ++||+|++.--+++. ++....+-+.+++++++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~--~~lp~~~--~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA--IDLPFDD--CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech--hhCCCCC--CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeE
Confidence 489999999999987764322 23799999999 7777643 689999996555443 333334444555555555
Q ss_pred eE
Q psy17460 152 VY 153 (216)
Q Consensus 152 ly 153 (216)
++
T Consensus 77 l~ 78 (160)
T PLN02232 77 VS 78 (160)
T ss_pred EE
Confidence 33
No 236
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.11 E-value=1.9e-05 Score=65.41 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=62.6
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc---ccCcc
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV---FKQKV 121 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~~ 121 (216)
...++..++|..+|.|.-+..+++.. .++|+|+|.|+.+++.++..+...+ .++.++.+++ .++.... ..+++
T Consensus 17 ~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF--~~l~~~l~~~~~~~v 93 (305)
T TIGR00006 17 NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNF--ANFFEHLDELLVTKI 93 (305)
T ss_pred CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCH--HHHHHHHHhcCCCcc
Confidence 33477899999999999999988763 4799999999999999999887653 2799999999 5543211 22579
Q ss_pred cEEEEc
Q psy17460 122 DTVIMN 127 (216)
Q Consensus 122 D~vi~n 127 (216)
|.|+.|
T Consensus 94 DgIl~D 99 (305)
T TIGR00006 94 DGILVD 99 (305)
T ss_pred cEEEEe
Confidence 999976
No 237
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.05 E-value=0.00015 Score=59.16 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=76.5
Q ss_pred CCCEEEEecCCCCHhHHHHhHcC---CCEEEEEeCChHHHHHHHHhhhHhCCCce-EEEEeccccccccccc-ccCcccE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLG---ADFCFALECDKEILDIFIDNKNEFEITNC-DAILFEINEKSLDSSV-FKQKVDT 123 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~---~~~v~~iD~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~-~~~~~D~ 123 (216)
..-+|+|+.||.|...+.+.... +..|...|.++..++..+..+...++.++ +|.++|+ ++..... ....+|+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dA--fd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDA--FDRDSLAALDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCC--CCHhHhhccCCCCCE
Confidence 55699999999999988866653 26899999999999999999999999875 9999999 7753221 1145799
Q ss_pred EEEcCCCCCC-CCCCC---HHHHHHHhhcCCc-eEEEee
Q psy17460 124 VIMNPPFGTR-NCGID---LAFVQYAADISKV-VYSLHK 157 (216)
Q Consensus 124 vi~npp~~~~-~~~~~---~~~~~~~l~~~~~-ly~~~~ 157 (216)
++..-=|..+ +.... ...+..++.+++. +|.-.+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP 251 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP 251 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 9987777665 22211 2334455555554 444443
No 238
>PRK11524 putative methyltransferase; Provisional
Probab=98.04 E-value=1.7e-05 Score=65.53 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhH
Q psy17460 32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNE 94 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~ 94 (216)
.+.+.++.... .+|+.|||++||+|+.++++.+.+. +.+|+|++++.++.|+.++..
T Consensus 196 ~L~erlI~~~S-----~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASS-----NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 44444444443 3799999999999999999999887 899999999999999999864
No 239
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.04 E-value=9.4e-05 Score=60.81 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=83.6
Q ss_pred HHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC--CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460 36 TILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG--ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD 113 (216)
Q Consensus 36 ~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~--~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 113 (216)
.++..+...++...+.+|||+|||+|.....+.... ...++++|.|+.+++.++..+.............+.. .+..
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~ 98 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLY-RDFL 98 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhh-cccc
Confidence 444555544456778899999999999776655542 3689999999999999998776533211111111120 1111
Q ss_pred cccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCc--chHHHHHHHHHhcCccceeeee
Q psy17460 114 SSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTS--TRESILKKIQAFKNVEQVDVIA 181 (216)
Q Consensus 114 ~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~--~~~~~~~~~~~~l~~~~g~~~~ 181 (216)
.. ...|+|++.-.+.......-..+++...........+.... .....+..+++.|...++.++.
T Consensus 99 -~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 99 -PF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred -cC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence 11 24499999655555533333446666655555533333333 4677777888877551334433
No 240
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=98.04 E-value=1.8e-05 Score=62.51 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHH
Q psy17460 30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFID 90 (216)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~ 90 (216)
|..+.+.++..... +|+.|||++||+|+.+.++.+.+. +.+|+|++++.++.|++
T Consensus 177 P~~l~~~lI~~~t~-----~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKASTN-----PGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS------TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhhc-----cceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 45666666665543 689999999999999999999987 89999999999998874
No 241
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.04 E-value=3.6e-05 Score=59.97 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460 34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD 113 (216)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 113 (216)
...++..+... .++.+|.|+|||.+.++..+.. .-.|+..|+-. . +-.+..+|. .+.|
T Consensus 60 vd~iI~~l~~~---~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva-----------~----n~~Vtacdi--a~vP 117 (219)
T PF05148_consen 60 VDVIIEWLKKR---PKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA-----------P----NPRVTACDI--ANVP 117 (219)
T ss_dssp HHHHHHHHCTS----TTS-EEEES-TT-HHHHH--S-----EEEEESS------------S----STTEEES-T--TS-S
T ss_pred HHHHHHHHHhc---CCCEEEEECCCchHHHHHhccc--CceEEEeeccC-----------C----CCCEEEecC--ccCc
Confidence 34455555532 2456999999999999854332 23799999864 1 335788999 8988
Q ss_pred cccccCcccEEEEcCCCC
Q psy17460 114 SSVFKQKVDTVIMNPPFG 131 (216)
Q Consensus 114 ~~~~~~~~D~vi~npp~~ 131 (216)
..+ +++|++|++....
T Consensus 118 L~~--~svDv~VfcLSLM 133 (219)
T PF05148_consen 118 LED--ESVDVAVFCLSLM 133 (219)
T ss_dssp --T--T-EEEEEEES---
T ss_pred CCC--CceeEEEEEhhhh
Confidence 876 8999999987654
No 242
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=98.01 E-value=3e-05 Score=69.02 Aligned_cols=107 Identities=18% Similarity=0.250 Sum_probs=76.1
Q ss_pred cCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc---C--CCEEEEEeCChHHHHHHHHhhhHhCC
Q psy17460 23 HLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL---G--ADFCFALECDKEILDIFIDNKNEFEI 97 (216)
Q Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~---~--~~~v~~iD~~~~~~~~~~~~~~~~~~ 97 (216)
..+++.||.++...++..+... ..++..|.|+.||+|.+....... + ...++|.++.+++...++.|+...+.
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~--~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGK--KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccC--CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 4678899999998887766532 125568999999999988765431 2 15799999999999999999766554
Q ss_pred C--ceEEEEecccccccccccccCcccEEEEcCCCCCC
Q psy17460 98 T--NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 98 ~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
. ......+|. ...+......+||.|++||||...
T Consensus 271 ~~~t~~~~~~dt--l~~~d~~~~~~~D~v~~NpPf~~~ 306 (501)
T TIGR00497 271 DYANFNIINADT--LTTKEWENENGFEVVVSNPPYSIS 306 (501)
T ss_pred CccccCcccCCc--CCCccccccccCCEEeecCCcccc
Confidence 2 344545665 443211122579999999999864
No 243
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.97 E-value=2.5e-05 Score=64.25 Aligned_cols=74 Identities=24% Similarity=0.242 Sum_probs=59.1
Q ss_pred EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~ 131 (216)
+++|++||.|.++..+...|...++++|+++.+++..+.|... .++.+|+ .++........+|++++.||+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di--~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDI--TKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------CCccCcc--ccCchhhcCCCCCEEEeCCCCh
Confidence 6899999999999888888877889999999999998888742 2677888 5544322125799999999998
Q ss_pred CC
Q psy17460 132 TR 133 (216)
Q Consensus 132 ~~ 133 (216)
..
T Consensus 74 ~f 75 (275)
T cd00315 74 PF 75 (275)
T ss_pred hh
Confidence 65
No 244
>PRK13699 putative methylase; Provisional
Probab=97.89 E-value=6.1e-05 Score=60.19 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh
Q psy17460 31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF 95 (216)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~ 95 (216)
..+.+.++.... .+|+.|||++||+|+.+.++.+.+. +.+|+|++++..+.+.+++...
T Consensus 150 ~~l~~~~i~~~s-----~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESFT-----HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHhC-----CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 345444444333 3788999999999999999998877 8999999999999999988653
No 245
>PHA01634 hypothetical protein
Probab=97.88 E-value=9.2e-05 Score=53.02 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=55.4
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
..+++|+|+|++.|..++.++..|+..|+++|.++...+..+.+.+.+.+-+--...+.. +..- +.||+.+++
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW-----~~~Y--~~~Di~~iD 99 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEW-----NGEY--EDVDIFVMD 99 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccc-----cccC--CCcceEEEE
Confidence 478999999999999999999999999999999999999999988765321111122222 2111 678888874
Q ss_pred C
Q psy17460 128 P 128 (216)
Q Consensus 128 p 128 (216)
-
T Consensus 100 C 100 (156)
T PHA01634 100 C 100 (156)
T ss_pred c
Confidence 3
No 246
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.88 E-value=0.00016 Score=60.62 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=53.9
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.+|.+++|+||++|.++..++++|. +|++||..+ +- ..+.. .++|+.+.+|. ..+... .+.+|.++||
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~--~~~V~h~~~d~--fr~~p~--~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMD--TGQVEHLRADG--FKFRPP--RKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhC--CCCEEEEeccC--cccCCC--CCCCCEEEEe
Confidence 5789999999999999999999987 999999654 11 11222 22789999988 776542 2789999998
Q ss_pred CC
Q psy17460 128 PP 129 (216)
Q Consensus 128 pp 129 (216)
.-
T Consensus 278 mv 279 (357)
T PRK11760 278 MV 279 (357)
T ss_pred cc
Confidence 64
No 247
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.87 E-value=0.00085 Score=54.92 Aligned_cols=145 Identities=15% Similarity=0.196 Sum_probs=78.2
Q ss_pred cccCCCcccCccccCCHHHHHHHH---HHHHhhcCCCCCCEEEEecCCCCHhH-HHHhHc-CC-CEEEEEeCChHHHHHH
Q psy17460 15 FNFSNPKVHLEQYHTPPHLAATIL---HTIQNNYNDIDGKTVLDLGCGSGILT-FGSILL-GA-DFCFALECDKEILDIF 88 (216)
Q Consensus 15 ~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~~~~~vlD~g~GtG~~~-~~~~~~-~~-~~v~~iD~~~~~~~~~ 88 (216)
....+|...+..|+--..+....- ..+... ....+.+|+=+|||.=-++ +.+++. +. ..|+++|+|+.+++.+
T Consensus 84 ~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~-~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a 162 (276)
T PF03059_consen 84 LASDNPLDHLESFPYYPNYEKLVRLEYAALRIH-AGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELA 162 (276)
T ss_dssp HH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT---TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHH
T ss_pred HhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhc-CCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 444566666777776564443333 333222 1113459999999976665 555543 43 5899999999999999
Q ss_pred HHhhh-HhCCC-ceEEEEecccccccccccccCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHH
Q psy17460 89 IDNKN-EFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILK 166 (216)
Q Consensus 89 ~~~~~-~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~ 166 (216)
++.+. ..++. +++|+.+|+ .+..... ..||+|+...--+ ........++.
T Consensus 163 ~~lv~~~~~L~~~m~f~~~d~--~~~~~dl--~~~DvV~lAalVg------------------------~~~e~K~~Il~ 214 (276)
T PF03059_consen 163 RRLVASDLGLSKRMSFITADV--LDVTYDL--KEYDVVFLAALVG------------------------MDAEPKEEILE 214 (276)
T ss_dssp HHHHH---HH-SSEEEEES-G--GGG-GG------SEEEE-TT-S----------------------------SHHHHHH
T ss_pred HHHHhhcccccCCeEEEecch--hcccccc--ccCCEEEEhhhcc------------------------cccchHHHHHH
Confidence 98776 34444 699999999 7765443 6899998733111 01123567777
Q ss_pred HHHHhcCccceeeeeeeecCCCc
Q psy17460 167 KIQAFKNVEQVDVIAEMKYDLNQ 189 (216)
Q Consensus 167 ~~~~~l~~~~g~~~~~~~~~~~~ 189 (216)
...+.+.+ ++.+++...-...+
T Consensus 215 ~l~~~m~~-ga~l~~Rsa~GlR~ 236 (276)
T PF03059_consen 215 HLAKHMAP-GARLVVRSAHGLRS 236 (276)
T ss_dssp HHHHHS-T-TSEEEEEE--GGGG
T ss_pred HHHhhCCC-CcEEEEecchhhHH
Confidence 77777788 88888876644444
No 248
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.84 E-value=0.00065 Score=55.44 Aligned_cols=38 Identities=26% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHH
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILD 86 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~ 86 (216)
..+.+||-+|||.|.++.+++..|. .+.|.|.|.-|+-
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll 92 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLL 92 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHH
Confidence 3456999999999999999999988 8999999988853
No 249
>KOG3045|consensus
Probab=97.81 E-value=0.00012 Score=58.73 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=47.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
...+|.|+|||.+-++. .-..+|+.+|+-. . +-.++.+|. .++|..+ ++.|+++++.
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a-----------~----~~~V~~cDm--~~vPl~d--~svDvaV~CL 236 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVA-----------V----NERVIACDM--RNVPLED--ESVDVAVFCL 236 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeec-----------C----CCceeeccc--cCCcCcc--CcccEEEeeH
Confidence 45699999999999876 2236899999864 1 567899999 8888876 8999999977
Q ss_pred CCC
Q psy17460 129 PFG 131 (216)
Q Consensus 129 p~~ 131 (216)
+..
T Consensus 237 SLM 239 (325)
T KOG3045|consen 237 SLM 239 (325)
T ss_pred hhh
Confidence 654
No 250
>KOG2940|consensus
Probab=97.68 E-value=0.00013 Score=57.56 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=62.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
....++|+|||.|.+...+...+-.+++-+|-|..|++.++.--. .++ .+....+|- ..+++.. +++|+|++..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i-~~~~~v~DE--E~Ldf~e--ns~DLiisSl 145 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSI-ETSYFVGDE--EFLDFKE--NSVDLIISSL 145 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cce-EEEEEecch--hcccccc--cchhhhhhhh
Confidence 345799999999999999888877899999999999999877532 233 466777887 4444443 7999999998
Q ss_pred CCCCC
Q psy17460 129 PFGTR 133 (216)
Q Consensus 129 p~~~~ 133 (216)
..|+.
T Consensus 146 slHW~ 150 (325)
T KOG2940|consen 146 SLHWT 150 (325)
T ss_pred hhhhh
Confidence 88876
No 251
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.66 E-value=0.002 Score=50.87 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=55.3
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-ccccCccc
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-SVFKQKVD 122 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~~D 122 (216)
...+|.+||-+|+.+|+....++.- + .+.|+++|.++...+.....++... |+-.+.+|+ ..... ...-+.+|
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~--NIiPIl~DA--r~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP--NIIPILEDA--RHPEKYRMLVEMVD 145 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST--TEEEEES-T--TSGGGGTTTS--EE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC--ceeeeeccC--CChHHhhccccccc
Confidence 3457899999999999988877764 5 3799999999988777665555433 899999999 54332 12226899
Q ss_pred EEEEcCC
Q psy17460 123 TVIMNPP 129 (216)
Q Consensus 123 ~vi~npp 129 (216)
+|++|-+
T Consensus 146 vI~~DVa 152 (229)
T PF01269_consen 146 VIFQDVA 152 (229)
T ss_dssp EEEEE-S
T ss_pred EEEecCC
Confidence 9999865
No 252
>KOG1709|consensus
Probab=97.65 E-value=0.00089 Score=52.41 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=68.3
Q ss_pred CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460 24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI 103 (216)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~ 103 (216)
+..+.|+ +.+.++..+. .+|.+||++|-|-|.....+-++.+..=+-+|.+|+.++..+...-...- ||-++
T Consensus 83 Mm~WEtp--iMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~-nViil 154 (271)
T KOG1709|consen 83 MMRWETP--IMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKE-NVIIL 154 (271)
T ss_pred hhhhhhH--HHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccccc-ceEEE
Confidence 4445544 4444444333 37889999999999999988888776778899999999998887543332 89999
Q ss_pred EecccccccccccccCcccEEEEc
Q psy17460 104 LFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 104 ~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.|-. .+......++.||-|+-|
T Consensus 155 ~g~W--eDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 155 EGRW--EDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred ecch--HhhhccccccCcceeEee
Confidence 9988 555444444779999864
No 253
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.62 E-value=0.0033 Score=52.77 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=64.5
Q ss_pred CCCEEEEecCCCCHhHHHHhH----cC-CCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEeccccccccc---c-cc
Q psy17460 49 DGKTVLDLGCGSGILTFGSIL----LG-ADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDS---S-VF 117 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~----~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~---~-~~ 117 (216)
++..++|+|||+|.-+..++. .+ ....+++|+|.++++.+..++.....+ .+.-+.||+ .+... . ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy--~~~l~~l~~~~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTY--DDGLAWLKRPEN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecH--HHHHhhcccccc
Confidence 466899999999997544332 22 257899999999999999998844444 455699999 55321 1 11
Q ss_pred cCcccEEE-EcCCCCCCCCCCCHHHHHHHhh
Q psy17460 118 KQKVDTVI-MNPPFGTRNCGIDLAFVQYAAD 147 (216)
Q Consensus 118 ~~~~D~vi-~npp~~~~~~~~~~~~~~~~l~ 147 (216)
.....+++ .-..++++.+.....++.....
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~ 184 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence 12345554 3446666666666777776654
No 254
>KOG3201|consensus
Probab=97.62 E-value=4.2e-05 Score=57.03 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=77.9
Q ss_pred CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCC-CCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC---C
Q psy17460 24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCG-SGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI---T 98 (216)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G-tG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~---~ 98 (216)
...||+.+.++ +.++.......|.+|+++|.| ||..++.+|...+ ..|+..|-+++.++..++....+.. +
T Consensus 8 vciwpseeala----~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~t 83 (201)
T KOG3201|consen 8 VCIWPSEEALA----WTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLT 83 (201)
T ss_pred EEecccHHHHH----HHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccc
Confidence 34567555444 334433233578999999999 4555576666544 8999999999999998887766532 2
Q ss_pred ceEEEEecccccccccccccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCc--eEEEeeCcchHHHHHHHHH
Q psy17460 99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKV--VYSLHKTSTRESILKKIQA 170 (216)
Q Consensus 99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~--ly~~~~~~~~~~~~~~~~~ 170 (216)
.+..+..+. -.-........||+|+|-...... -+.+-.+-+..-+++.+. +++-....+.+.+...+..
T Consensus 84 sc~vlrw~~--~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~ 156 (201)
T KOG3201|consen 84 SCCVLRWLI--WGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGT 156 (201)
T ss_pred eehhhHHHH--hhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHh
Confidence 343333333 111112222589999985443222 112222334444555444 3333333344444444433
No 255
>KOG2198|consensus
Probab=97.59 E-value=0.00067 Score=57.07 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=68.1
Q ss_pred HHHHHHHHH-hhcCCCCCCEEEEecCCCCHhHHHHhHcCC-----CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460 34 AATILHTIQ-NNYNDIDGKTVLDLGCGSGILTFGSILLGA-----DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107 (216)
Q Consensus 34 ~~~~~~~~~-~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-----~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 107 (216)
....++++. ..+...++++|||+++..|.-+..+.+... +.|++=|.++.-+......++.....++.+...|+
T Consensus 139 rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~ 218 (375)
T KOG2198|consen 139 RQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDA 218 (375)
T ss_pred hhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccc
Confidence 334445553 223557899999999999998876666421 38999999998888887777554444566666666
Q ss_pred ccccccccc-------ccCcccEEEEcCCCCCC
Q psy17460 108 NEKSLDSSV-------FKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 108 ~~~~~~~~~-------~~~~~D~vi~npp~~~~ 133 (216)
..++... ....||-|+||.|....
T Consensus 219 --~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~D 249 (375)
T KOG2198|consen 219 --SLFPNIYLKDGNDKEQLKFDRVLVDVPCSGD 249 (375)
T ss_pred --eeccccccccCchhhhhhcceeEEecccCCC
Confidence 4444321 22579999999998764
No 256
>KOG1501|consensus
Probab=97.59 E-value=0.00013 Score=62.59 Aligned_cols=56 Identities=27% Similarity=0.336 Sum_probs=52.2
Q ss_pred EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecc
Q psy17460 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEI 107 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~ 107 (216)
-|||+|+|||.++..++..|+..|+++|.-..|.+.|++...++++. +|+++.--.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS 125 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS 125 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence 69999999999999999999989999999999999999999999987 788887776
No 257
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.57 E-value=0.00017 Score=59.88 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=56.1
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--cc--ccCcc
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--SV--FKQKV 121 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~--~~~~~ 121 (216)
..++...+|...|.|..+..+++.. .++++|+|.|+++++.+++++....- ++.++.+++ .++.. .. ....+
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~-r~~~~~~~F--~~l~~~l~~~~~~~~~ 94 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDD-RFIFIHGNF--SNLDEYLKELNGINKV 94 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCT-TEEEEES-G--GGHHHHHHHTTTTS-E
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccc-eEEEEeccH--HHHHHHHHHccCCCcc
Confidence 3477899999999999999988763 38999999999999999999876533 899999999 55432 21 12489
Q ss_pred cEEEEc
Q psy17460 122 DTVIMN 127 (216)
Q Consensus 122 D~vi~n 127 (216)
|.|++|
T Consensus 95 dgiL~D 100 (310)
T PF01795_consen 95 DGILFD 100 (310)
T ss_dssp EEEEEE
T ss_pred CEEEEc
Confidence 999976
No 258
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.53 E-value=0.00057 Score=54.80 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=56.1
Q ss_pred CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
..+|+|+|||.--+++......+ ..++|+|||..+++.....+...+. +.++...|. ..-+.. ...|+.+.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl--~~~~~~---~~~DlaLl 177 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDL--LSDPPK---EPADLALL 177 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-T--TTSHTT---SEESEEEE
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeee--eccCCC---CCcchhhH
Confidence 67999999999999988665543 6999999999999999999988887 788888899 776544 67899886
No 259
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.51 E-value=0.00068 Score=58.16 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=68.1
Q ss_pred CCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCc--eEEEEecccccccccccccCcccEEE
Q psy17460 50 GKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITN--CDAILFEINEKSLDSSVFKQKVDTVI 125 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~~D~vi 125 (216)
+-+|||.-+|+|.-++-.+.. +..+|+.-|+|+++++.++.|++.|+++. +++...|+ ..+.. ...+.||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DA--n~ll~-~~~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDA--NVLLY-SRQERFDVID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-H--HHHHC-HSTT-EEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhH--HHHhh-hccccCCEEE
Confidence 458999999999999876665 34799999999999999999999999874 89999999 65542 2237899998
Q ss_pred EcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460 126 MNPPFGTRNCGIDLAFVQYAADISKV 151 (216)
Q Consensus 126 ~npp~~~~~~~~~~~~~~~~l~~~~~ 151 (216)
.|| |+.. ..|++.++...+.
T Consensus 127 lDP-fGSp-----~pfldsA~~~v~~ 146 (377)
T PF02005_consen 127 LDP-FGSP-----APFLDSALQAVKD 146 (377)
T ss_dssp E---SS-------HHHHHHHHHHEEE
T ss_pred eCC-CCCc-----cHhHHHHHHHhhc
Confidence 876 6543 4588888888766
No 260
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.45 E-value=0.00027 Score=58.99 Aligned_cols=73 Identities=27% Similarity=0.384 Sum_probs=55.6
Q ss_pred EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~ 131 (216)
+++|++||-|.+..-+.+.|..-++++|+++.+.+.-+.|.. ....+|+ .++......+.+|+++..||..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di--~~~~~~~l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDI--TEIDPSDLPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHG--GGCHHHHHHHT-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccc--cccccccccccceEEEeccCCc
Confidence 689999999999999999887789999999999988888875 7889999 6655332112599999999987
Q ss_pred CC
Q psy17460 132 TR 133 (216)
Q Consensus 132 ~~ 133 (216)
..
T Consensus 73 ~f 74 (335)
T PF00145_consen 73 GF 74 (335)
T ss_dssp TT
T ss_pred eE
Confidence 75
No 261
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.44 E-value=7.7e-05 Score=52.09 Aligned_cols=73 Identities=11% Similarity=0.038 Sum_probs=25.8
Q ss_pred EEecCCCCHhHHHHhHcC---C-CEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC
Q psy17460 54 LDLGCGSGILTFGSILLG---A-DFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 54 lD~g~GtG~~~~~~~~~~---~-~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
||+|+..|..+..+++.- . .+++++|..+. .+.++..+++.+.. +++++.++. .+.......+++|+++.|.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s--~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDS--PDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-T--HHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCc--HHHHHHcCCCCEEEEEECC
Confidence 689999999887766541 1 37999999995 33333333333333 799999999 6654333237999999987
Q ss_pred C
Q psy17460 129 P 129 (216)
Q Consensus 129 p 129 (216)
+
T Consensus 78 ~ 78 (106)
T PF13578_consen 78 D 78 (106)
T ss_dssp -
T ss_pred C
Confidence 5
No 262
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.001 Score=56.08 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=73.7
Q ss_pred CCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 50 GKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
..+|+|..+|||.-++-.+.. +..+|+.-|+||++++.++.|+..|...+...+..|+ ..+....+ ..||+|=.||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DA--N~lm~~~~-~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDA--NALLHELH-RAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchH--HHHHHhcC-CCccEEecCC
Confidence 789999999999999887765 4458999999999999999999998444677777999 77665533 6899997765
Q ss_pred CCCCCCCCCCHHHHHHHhhcCCc
Q psy17460 129 PFGTRNCGIDLAFVQYAADISKV 151 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~~~~~ 151 (216)
|+.. ..|++.++...++
T Consensus 130 -FGSP-----aPFlDaA~~s~~~ 146 (380)
T COG1867 130 -FGSP-----APFLDAALRSVRR 146 (380)
T ss_pred -CCCC-----chHHHHHHHHhhc
Confidence 6654 2378878777664
No 263
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.0019 Score=53.12 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=65.1
Q ss_pred HhhcCCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc---c
Q psy17460 42 QNNYNDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS---V 116 (216)
Q Consensus 42 ~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~ 116 (216)
...+...++...+|..-|.|..+..++...+ ++++|+|.|+.+++.|+..+..++- ++.++.+++ .++... .
T Consensus 16 i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~-r~~~v~~~F--~~l~~~l~~~ 92 (314)
T COG0275 16 VELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG-RVTLVHGNF--ANLAEALKEL 92 (314)
T ss_pred HHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC-cEEEEeCcH--HHHHHHHHhc
Confidence 3333445778999999999999999888754 6799999999999999999987663 899999999 554322 1
Q ss_pred ccCcccEEEEc
Q psy17460 117 FKQKVDTVIMN 127 (216)
Q Consensus 117 ~~~~~D~vi~n 127 (216)
...++|-|+.|
T Consensus 93 ~i~~vDGiL~D 103 (314)
T COG0275 93 GIGKVDGILLD 103 (314)
T ss_pred CCCceeEEEEe
Confidence 22578888865
No 264
>KOG4589|consensus
Probab=97.14 E-value=0.0053 Score=47.15 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEe-cccccccccc------ccc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILF-EINEKSLDSS------VFK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~------~~~ 118 (216)
.++.+|||+||..|+.+..+.+. ++ +.|.|||+-+ ......++++.+ |+ .+.... ...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~Ga~~i~~~dv--tdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEGATIIQGNDV--TDPETYRKIFEALPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCCccccccccc--CCHHHHHHHHHhCCC
Confidence 57889999999999999887776 35 8999999854 222335677777 77 432211 122
Q ss_pred CcccEEEEcCCC
Q psy17460 119 QKVDTVIMNPPF 130 (216)
Q Consensus 119 ~~~D~vi~npp~ 130 (216)
-++|+|++|..-
T Consensus 135 r~VdvVlSDMap 146 (232)
T KOG4589|consen 135 RPVDVVLSDMAP 146 (232)
T ss_pred CcccEEEeccCC
Confidence 579999998654
No 265
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.002 Score=54.42 Aligned_cols=77 Identities=32% Similarity=0.410 Sum_probs=61.6
Q ss_pred CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccC-cccEEEEcC
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQ-KVDTVIMNP 128 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-~~D~vi~np 128 (216)
..+++|++||-|.+..-+...|..-+.++|+++.+++.-+.|... ..++.+|+ .++....... .+|+++..|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di--~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDI--KELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechH--hhcChhhccccCCCEEEeCC
Confidence 358999999999999888888877889999999999988888763 46777888 5554432213 799999999
Q ss_pred CCCCC
Q psy17460 129 PFGTR 133 (216)
Q Consensus 129 p~~~~ 133 (216)
|...+
T Consensus 76 PCQ~F 80 (328)
T COG0270 76 PCQDF 80 (328)
T ss_pred CCcch
Confidence 99875
No 266
>PRK10458 DNA cytosine methylase; Provisional
Probab=97.07 E-value=0.0041 Score=54.84 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=57.9
Q ss_pred CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--------------
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-------------- 115 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-------------- 115 (216)
.-+++|++||.|.+..-+-..|..-|.++|+++.+.+.-+.|..... +...+.+|+ .++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p--~~~~~~~DI--~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP--ATHRFNEDI--RDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC--ccceeccCh--hhCccccccccchhhhhhhh
Confidence 34899999999999988877777678899999998888777753211 344556777 444311
Q ss_pred -cccCcccEEEEcCCCCCC
Q psy17460 116 -VFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 116 -~~~~~~D~vi~npp~~~~ 133 (216)
.....+|+++..||....
T Consensus 164 ~~~~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPF 182 (467)
T ss_pred hccCCCCCEEEEcCCCCcc
Confidence 011368999999998875
No 267
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.023 Score=44.29 Aligned_cols=93 Identities=19% Similarity=0.211 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhc---CCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460 33 LAATILHTIQNNY---NDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEIN 108 (216)
Q Consensus 33 ~~~~~~~~~~~~~---~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 108 (216)
.+..+...++.-+ +..+|.+||=+|+.+|+....++.- +.+.++|||.++.........+.... |+-.+.+|+
T Consensus 57 ~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~--Ni~PIL~DA- 133 (231)
T COG1889 57 RRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP--NIIPILEDA- 133 (231)
T ss_pred chhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC--Cceeeeccc-
Confidence 3344444444322 4467899999999999988877764 45789999999998887777666533 899999999
Q ss_pred ccccccc-cccCcccEEEEcCC
Q psy17460 109 EKSLDSS-VFKQKVDTVIMNPP 129 (216)
Q Consensus 109 ~~~~~~~-~~~~~~D~vi~npp 129 (216)
...... ..-+.+|+|+.|-.
T Consensus 134 -~~P~~Y~~~Ve~VDviy~DVA 154 (231)
T COG1889 134 -RKPEKYRHLVEKVDVIYQDVA 154 (231)
T ss_pred -CCcHHhhhhcccccEEEEecC
Confidence 543221 12267999998753
No 268
>KOG3987|consensus
Probab=97.01 E-value=0.00015 Score=56.37 Aligned_cols=97 Identities=21% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCC
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP 129 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp 129 (216)
+.++||+|+|.|-++..++-.. .+|++.|+|..|+...++. +. | + ... .++...+ -++|+|.|=
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk----~y-n--V--l~~--~ew~~t~--~k~dli~cl-- 176 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK----NY-N--V--LTE--IEWLQTD--VKLDLILCL-- 176 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc----CC-c--e--eee--hhhhhcC--ceeehHHHH--
Confidence 4799999999999998777663 5799999999887765543 21 1 1 111 2222111 368888761
Q ss_pred CCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeec
Q psy17460 130 FGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKY 185 (216)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 185 (216)
..++++..+.+ +++.....+.|++|++++....
T Consensus 177 ----------NlLDRc~~p~k-------------LL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 177 ----------NLLDRCFDPFK-------------LLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred ----------HHHHhhcChHH-------------HHHHHHHHhccCCCcEEEEEEe
Confidence 23444444433 6677777777777777764443
No 269
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.98 E-value=0.023 Score=40.73 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=48.2
Q ss_pred EEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccc--cccccccCcccEEEEcC
Q psy17460 53 VLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS--LDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 53 vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~D~vi~np 128 (216)
++|+|||+|... .+..... ..++|+|+++.++..++..........+.+..+|. .. .+.... ..||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADA--LGGVLPFEDS-ASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecc--ccCCCCCCCC-CceeEEeeee
Confidence 999999999976 3333322 37899999999998855554331210168888888 54 443311 3799994444
Q ss_pred CC
Q psy17460 129 PF 130 (216)
Q Consensus 129 p~ 130 (216)
..
T Consensus 128 ~~ 129 (257)
T COG0500 128 VL 129 (257)
T ss_pred eh
Confidence 43
No 270
>KOG2912|consensus
Probab=96.98 E-value=0.00088 Score=55.31 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=53.2
Q ss_pred EEecCCCCHhH-HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccc---ccccCcccEEEEcC
Q psy17460 54 LDLGCGSGILT-FGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDS---SVFKQKVDTVIMNP 128 (216)
Q Consensus 54 lD~g~GtG~~~-~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~~~D~vi~np 128 (216)
+|+|+|+-++- +.-+.+.....+++|+++...+.|+.|+.++++. .+.++.-...+.-+.. ..+...||.+.|||
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNP 186 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNP 186 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCC
Confidence 67777766543 2222333478899999999999999999998876 4666655441111111 11124599999999
Q ss_pred CCCCC
Q psy17460 129 PFGTR 133 (216)
Q Consensus 129 p~~~~ 133 (216)
||...
T Consensus 187 PFfe~ 191 (419)
T KOG2912|consen 187 PFFEN 191 (419)
T ss_pred chhhc
Confidence 99864
No 271
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.97 E-value=0.0016 Score=54.65 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=56.3
Q ss_pred EEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460 53 VLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT 132 (216)
Q Consensus 53 vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~ 132 (216)
|+|++||.|.++.-+.+.|..-+.++|+++.+++..+.|... .++.+|+ .++..... ..+|+++..||...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di--~~~~~~~~-~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------KVPFGDI--TKISPSDI-PDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------CCCccCh--hhhhhhhC-CCcCEEEecCCCcc
Confidence 689999999999888888876678999999999988888642 4566888 55443211 46899999999876
Q ss_pred C
Q psy17460 133 R 133 (216)
Q Consensus 133 ~ 133 (216)
.
T Consensus 72 f 72 (315)
T TIGR00675 72 F 72 (315)
T ss_pred c
Confidence 5
No 272
>KOG1227|consensus
Probab=96.94 E-value=0.00044 Score=56.58 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=60.3
Q ss_pred CCCEEEEecCCCCHhHH-HHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGILTF-GSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~-~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.+..|.|+.+|.|.+++ .+...|+..|+++|.+|..++..+++++.|++. .+.++.||. ...-+. ...|.|..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~--R~~~~~---~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN--RNPKPR---LRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc--cccCcc---ccchheee
Confidence 46899999999999998 566778899999999999999999999998765 577888888 554433 56777764
No 273
>KOG1269|consensus
Probab=96.94 E-value=0.0028 Score=54.04 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=61.0
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEE
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.++..++|+|||.|.....++..+.+.++|++.++..+..+........++ +..++.+|+ ..-++.+ +.||.+-+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~--~~~~fed--n~fd~v~~ 184 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF--GKMPFED--NTFDGVRF 184 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh--hcCCCCc--cccCcEEE
Confidence 466789999999999999988876679999999998888777766555554 456699999 8887766 78999865
No 274
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.80 E-value=0.0022 Score=56.09 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEE---eCChHHHHHHHHhhhHhCCCceEEEEeccc
Q psy17460 32 HLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFAL---ECDKEILDIFIDNKNEFEITNCDAILFEIN 108 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~i---D~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 108 (216)
++.+.+...+........-..+||+|||+|+++..+..++- .++.+ |..+.+++.|.++ |+ -.+.+-+.
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----Gv---pa~~~~~~ 171 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----GV---PAMIGVLG 171 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----Cc---chhhhhhc
Confidence 45555555554321112235899999999999999999853 22222 4444455554433 22 23323321
Q ss_pred ccccccccccCcccEEEEcCCCCCC--CCCCCHHHHHHHhhcCCc
Q psy17460 109 EKSLDSSVFKQKVDTVIMNPPFGTR--NCGIDLAFVQYAADISKV 151 (216)
Q Consensus 109 ~~~~~~~~~~~~~D~vi~npp~~~~--~~~~~~~~~~~~l~~~~~ 151 (216)
...+|+.. +.||+|-|.-..... +.+..+--++++|++++.
T Consensus 172 s~rLPfp~--~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGy 214 (506)
T PF03141_consen 172 SQRLPFPS--NAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY 214 (506)
T ss_pred cccccCCc--cchhhhhcccccccchhcccceeehhhhhhccCce
Confidence 14555544 799999876544433 223333345677777775
No 275
>KOG3178|consensus
Probab=96.77 E-value=0.031 Score=46.93 Aligned_cols=98 Identities=12% Similarity=0.008 Sum_probs=70.2
Q ss_pred CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCC
Q psy17460 51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~ 130 (216)
...+|+|.|.|..+-.+....+ +|-+++.+...+-.+..++. . .|+.+.||. +.-. .+-|+|++.=-.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~---gV~~v~gdm--fq~~-----P~~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-P---GVEHVAGDM--FQDT-----PKGDAIWMKWIL 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-C---Ccceecccc--cccC-----CCcCeEEEEeec
Confidence 6899999999999988777544 79999999988887777764 3 478888998 6553 355799884444
Q ss_pred CCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 131 GTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
|+. +..+...+++.+++-|.| +|.+++...
T Consensus 247 hdw-----------------------tDedcvkiLknC~~sL~~-~GkIiv~E~ 276 (342)
T KOG3178|consen 247 HDW-----------------------TDEDCVKILKNCKKSLPP-GGKIIVVEN 276 (342)
T ss_pred ccC-----------------------ChHHHHHHHHHHHHhCCC-CCEEEEEec
Confidence 433 222345566667777777 777776444
No 276
>KOG2078|consensus
Probab=96.76 E-value=0.001 Score=56.90 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=56.3
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLD 113 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~ 113 (216)
+|..|-|++||.|-+++.+++.+ +.|++-|+++++++..+.|+..+.+. +++++..|+ .++.
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda--~~Fl 312 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA--KDFL 312 (495)
T ss_pred CcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccH--HHHh
Confidence 78999999999999999999998 59999999999999999999999876 599999998 5544
No 277
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.68 E-value=0.0037 Score=45.92 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=39.6
Q ss_pred EEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460 74 FCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131 (216)
Q Consensus 74 ~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~ 131 (216)
+|+|+||.+.+++..+.++...++. +++++..+= .++......+++|+++.|.=|-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH--e~l~~~i~~~~v~~~iFNLGYL 57 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH--ENLDEYIPEGPVDAAIFNLGYL 57 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G--GGGGGT--S--EEEEEEEESB-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH--HHHHhhCccCCcCEEEEECCcC
Confidence 6899999999999999999998876 699999888 4433222114899999997664
No 278
>KOG4058|consensus
Probab=96.57 E-value=0.008 Score=44.40 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=52.7
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDS 114 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~ 114 (216)
.+..+.+|+|+|.|.+.+.+++.|.-..+|+|+++=.+...+-..-..++. ...|..-|. .....
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl--wK~dl 136 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL--WKVDL 136 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh--hhccc
Confidence 343479999999999999999998667899999999999988887777765 577777777 55443
No 279
>KOG0822|consensus
Probab=96.56 E-value=0.0046 Score=54.41 Aligned_cols=132 Identities=16% Similarity=0.217 Sum_probs=87.0
Q ss_pred HHHhhcccCCCcccCccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhH---c-C-CCEEEEEeCChHH
Q psy17460 10 LQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSIL---L-G-ADFCFALECDKEI 84 (216)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~---~-~-~~~v~~iD~~~~~ 84 (216)
.++++..|+.+.+++.+|. ..+.+.+++.+...-. ....+|+-+|+|-|-+.....+ . . .-+++++|-+|++
T Consensus 331 e~~TYetFEkD~VKY~~Yq--~Ai~~AL~Drvpd~~a-~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNA 407 (649)
T KOG0822|consen 331 ENQTYETFEKDPVKYDQYQ--QAILKALLDRVPDESA-KTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNA 407 (649)
T ss_pred hhhhhhhhhccchHHHHHH--HHHHHHHHhhCccccc-CceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcch
Confidence 3455677888888888887 5566666666554311 1256899999999998755333 2 2 2689999999999
Q ss_pred HHHHHHhhhHhCCC-ceEEEEecccccccccccccCcccEEEEcC--CCCCCCCCCCHHHHHHHhhcCCc
Q psy17460 85 LDIFIDNKNEFEIT-NCDAILFEINEKSLDSSVFKQKVDTVIMNP--PFGTRNCGIDLAFVQYAADISKV 151 (216)
Q Consensus 85 ~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~D~vi~np--p~~~~~~~~~~~~~~~~l~~~~~ 151 (216)
+-..+. .+..+.. +|+++.+|- ..+.... ++.|++++-. .|+ +.+...+.+.-+...++.
T Consensus 408 ivtL~~-~n~~~W~~~Vtii~~DM--R~w~ap~--eq~DI~VSELLGSFG--DNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 408 IVTLQN-RNFECWDNRVTIISSDM--RKWNAPR--EQADIIVSELLGSFG--DNELSPECLDGAQKFLKP 470 (649)
T ss_pred hhhhhh-hchhhhcCeeEEEeccc--cccCCch--hhccchHHHhhcccc--CccCCHHHHHHHHhhcCC
Confidence 877666 2222232 799999999 7776432 7899998642 333 444444555555555544
No 280
>KOG2798|consensus
Probab=96.42 E-value=0.039 Score=45.75 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHH
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEIL 85 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~ 85 (216)
+.+.+-+++..........+||-+|||.|.++..++..|. ++-|=|.|.-|+
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Ml 185 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFML 185 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHH
Confidence 4444444444433334456899999999999999999987 566667776654
No 281
>PRK11524 putative methyltransferase; Provisional
Probab=96.37 E-value=0.0074 Score=49.85 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=24.7
Q ss_pred ceEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460 99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT 132 (216)
Q Consensus 99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~ 132 (216)
+..++++|+ .+.......++||+||+||||..
T Consensus 8 ~~~i~~gD~--~~~l~~l~~~siDlIitDPPY~~ 39 (284)
T PRK11524 8 AKTIIHGDA--LTELKKIPSESVDLIFADPPYNI 39 (284)
T ss_pred CCEEEeccH--HHHHHhcccCcccEEEECCCccc
Confidence 467999999 77543333479999999999974
No 282
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.29 E-value=0.0081 Score=41.86 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCC
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD 81 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~ 81 (216)
+++.++.+-.......+....+|+|||.|.+..-+.+.|- .-+|+|+-
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 4455555544443333455799999999999988888876 67899974
No 283
>KOG0821|consensus
Probab=96.24 E-value=0.015 Score=45.88 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=72.3
Q ss_pred CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEE
Q psy17460 24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI 103 (216)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~ 103 (216)
..+|-....+...++.... ......|.++|.|.|.++..+...+..++..+|+|...+.-.+...+.... +..+.
T Consensus 29 SQNfLMD~~lT~KIvK~A~----~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~-~~~IH 103 (326)
T KOG0821|consen 29 SQNFLMDLRLTDKIVKKAG----NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPG-KLRIH 103 (326)
T ss_pred hHhHHhhhHHHHHHHHhcc----ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCc-ceEEe
Confidence 3345555566666655554 347789999999999999999999888999999999888877766654443 67888
Q ss_pred Eecccccccc----------cccccCcccEEEEcCCCCCC
Q psy17460 104 LFEINEKSLD----------SSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 104 ~~d~~~~~~~----------~~~~~~~~D~vi~npp~~~~ 133 (216)
.+|+...+.. +.+. .+--.||.|.||...
T Consensus 104 h~D~LR~~I~~~~~~~~~Rpw~d~-~p~~H~IGNLPf~i~ 142 (326)
T KOG0821|consen 104 HGDVLRFKIEKAFSESLKRPWEDD-PPNVHIIGNLPFSVS 142 (326)
T ss_pred ccccceehHHhhcchhhcCCcccC-CCceEEeccCCcccc
Confidence 8888333221 1110 123467899998543
No 284
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.22 E-value=0.045 Score=42.91 Aligned_cols=61 Identities=8% Similarity=-0.002 Sum_probs=33.1
Q ss_pred CCCEEEEecCCCCHhHHHHhHc-----CCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILL-----GADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKS 111 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~-----~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~ 111 (216)
+++.|+|+|.-.|..++..|.. +.++|+|+|++....+..... ...+ ++|++++||..+.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e--~hp~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE--SHPMSPRITFIQGDSIDPE 98 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG--G----TTEEEEES-SSSTH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh--hccccCceEEEECCCCCHH
Confidence 6779999999999988766542 237999999975443222111 1111 27999999994333
No 285
>KOG2793|consensus
Probab=96.21 E-value=0.17 Score=40.93 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhh
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNK 92 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~ 92 (216)
++..||++|+|+|..++.++.....++...|+ +..+...+.|.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~ 128 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNR 128 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhh
Confidence 35579999999999898888865568998888 44555444443
No 286
>KOG2352|consensus
Probab=96.07 E-value=0.11 Score=45.53 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=63.2
Q ss_pred EEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~ 131 (216)
+++-+|||.-.+...+...|...|+.+|+|+-.++.+...-. ....-..+...|. ....+.+ ++||+|+--+.+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~--~~l~fed--ESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDM--DQLVFED--ESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecc--hhccCCC--cceeEEEecCccc
Confidence 899999999999999999888889999999999888776543 2222588999999 7776665 8999999877776
Q ss_pred CC
Q psy17460 132 TR 133 (216)
Q Consensus 132 ~~ 133 (216)
..
T Consensus 126 al 127 (482)
T KOG2352|consen 126 AL 127 (482)
T ss_pred cc
Confidence 65
No 287
>KOG1331|consensus
Probab=95.99 E-value=0.0057 Score=49.88 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=66.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCce-EEEEecccccccccccccCcccEEEEc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNC-DAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.+..++|.|||.|-... ......++|.|++...+..+++. +. ....+|+ ++.+... ++||.+++-
T Consensus 45 ~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~--l~~p~~~--~s~d~~lsi 110 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADA--LKLPFRE--ESFDAALSI 110 (293)
T ss_pred CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhh--hcCCCCC--Cccccchhh
Confidence 48899999999998653 12236799999998887776554 34 6889999 9998876 899999987
Q ss_pred CCCCCC----CCCCCHHHHHHHhhcCCc--eEEE
Q psy17460 128 PPFGTR----NCGIDLAFVQYAADISKV--VYSL 155 (216)
Q Consensus 128 pp~~~~----~~~~~~~~~~~~l~~~~~--ly~~ 155 (216)
.--|++ ++....+.+-++++++++ +|..
T Consensus 111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 777765 333334455566666666 4444
No 288
>KOG3115|consensus
Probab=95.77 E-value=0.079 Score=41.38 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=50.6
Q ss_pred CCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhC-------CCceEEEEeccccccccc
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFE-------ITNCDAILFEINEKSLDS 114 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~-------~~~v~~~~~d~~~~~~~~ 114 (216)
.--+.|+|||-|.+.+.++-..+ .-++|.||-...-+..+..+...+ ..|+.+...++ ..+..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na--mk~lp 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA--MKFLP 131 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc--hhhcc
Confidence 34699999999999999998877 788999998888888888777665 44677777777 66543
No 289
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.05 Score=44.88 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=43.0
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFE 96 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~ 96 (216)
..+..|||+.+|+|..+..+...+. .++|+|++++.++.+...+....
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhhc
Confidence 4789999999999999998888876 89999999999999999887643
No 290
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.52 E-value=0.0085 Score=48.75 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=36.8
Q ss_pred CEEEEecCCCCHh--HHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460 51 KTVLDLGCGSGIL--TFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107 (216)
Q Consensus 51 ~~vlD~g~GtG~~--~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 107 (216)
...||+|||.-+. .-++++. .+ ++|+-+|.+|-.+..++..+..+.-....++.+|+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~ 130 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADL 130 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCC
Confidence 4899999996553 4556554 23 79999999999999888887765422389999999
No 291
>KOG1201|consensus
Probab=95.47 E-value=0.087 Score=43.47 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=61.7
Q ss_pred CCCCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------c
Q psy17460 46 NDIDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------V 116 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~ 116 (216)
+...|+.||=.|.|+|. ++.+++++|+ +++..|+++...+...+.++..| ++..+.+|+.+.+-... .
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHH
Confidence 34578999999999987 5677888887 89999999998888777777666 78999999944432221 1
Q ss_pred ccCcccEEEEcCC
Q psy17460 117 FKQKVDTVIMNPP 129 (216)
Q Consensus 117 ~~~~~D~vi~npp 129 (216)
.-+.+|+++.|.-
T Consensus 111 e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 111 EVGDVDILVNNAG 123 (300)
T ss_pred hcCCceEEEeccc
Confidence 2267999998853
No 292
>KOG1562|consensus
Probab=95.43 E-value=0.06 Score=44.36 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=65.2
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCC----CceEEEEecccccccccccccCcc
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEI----TNCDAILFEINEKSLDSSVFKQKV 121 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~~ 121 (216)
....++||-+|-|.|....+.+++.. .++.-+|++.+.++..++.+....+ +++.+..||- ..+....+.++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG--~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG--FLFLEDLKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH--HHHHHHhccCCc
Confidence 34678999999999999988888754 7899999999999999988765432 2799999998 776644445899
Q ss_pred cEEEEcCC
Q psy17460 122 DTVIMNPP 129 (216)
Q Consensus 122 D~vi~npp 129 (216)
|+|+.+..
T Consensus 197 dVii~dss 204 (337)
T KOG1562|consen 197 DVIITDSS 204 (337)
T ss_pred eEEEEecC
Confidence 99997643
No 293
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.32 E-value=0.13 Score=41.89 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=63.1
Q ss_pred CCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh----------------C-----------C-C
Q psy17460 47 DIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF----------------E-----------I-T 98 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~----------------~-----------~-~ 98 (216)
..+|.++||+|||.-......+.....+++..|..+.-++..++=++.. | + .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4567899999999977665555554679999999887776554433221 1 0 0
Q ss_pred ce-EEEEecccccccccccc----cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcC
Q psy17460 99 NC-DAILFEINEKSLDSSVF----KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKN 173 (216)
Q Consensus 99 ~v-~~~~~d~~~~~~~~~~~----~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~ 173 (216)
.| .++.+|+ ...+.-.. ..+||+|++... ++.+..-. ......++...+.|+
T Consensus 134 ~Vk~Vv~cDV--~~~~pl~~~~~~p~~~D~v~s~fc------------LE~a~~d~---------~~y~~al~ni~~lLk 190 (256)
T PF01234_consen 134 AVKQVVPCDV--TQPNPLDPPVVLPPKFDCVISSFC------------LESACKDL---------DEYRRALRNISSLLK 190 (256)
T ss_dssp HEEEEEE--T--TSSSTTTTS-SS-SSEEEEEEESS------------HHHH-SSH---------HHHHHHHHHHHTTEE
T ss_pred hhceEEEeec--cCCCCCCccccCccchhhhhhhHH------------HHHHcCCH---------HHHHHHHHHHHHHcC
Confidence 24 4788999 55332211 135999988432 12121111 122334455677889
Q ss_pred ccceeeeeeee
Q psy17460 174 VEQVDVIAEMK 184 (216)
Q Consensus 174 ~~~g~~~~~~~ 184 (216)
| +|.+++-..
T Consensus 191 p-GG~Lil~~~ 200 (256)
T PF01234_consen 191 P-GGHLILAGV 200 (256)
T ss_dssp E-EEEEEEEEE
T ss_pred C-CcEEEEEEE
Confidence 9 999888444
No 294
>KOG2360|consensus
Probab=95.28 E-value=0.047 Score=46.45 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=68.4
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHc-C-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILL-G-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
...+|..|+|.+|-.|.-+..++.. . ..+++|+|.+.+..+..++.+...|+..++...+|+ ...+....-..+..
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df--~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDF--LNTATPEKFRDVTY 287 (413)
T ss_pred CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccc--cCCCCcccccceeE
Confidence 3457789999999999988776653 2 378999999999999999999999987788889999 66332222256788
Q ss_pred EEEcCCCCCC
Q psy17460 124 VIMNPPFGTR 133 (216)
Q Consensus 124 vi~npp~~~~ 133 (216)
++++|+..-.
T Consensus 288 iL~DpscSgS 297 (413)
T KOG2360|consen 288 ILVDPSCSGS 297 (413)
T ss_pred EEeCCCCCCC
Confidence 9999998763
No 295
>PRK13699 putative methylase; Provisional
Probab=95.22 E-value=0.022 Score=45.48 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=25.0
Q ss_pred eEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460 100 CDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT 132 (216)
Q Consensus 100 v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~ 132 (216)
++++.||+ .+.....+++++|+||.+|||..
T Consensus 2 ~~l~~gD~--le~l~~lpd~SVDLIiTDPPY~i 32 (227)
T PRK13699 2 SRFILGNC--IDVMARFPDNAVDFILTDPPYLV 32 (227)
T ss_pred CeEEechH--HHHHHhCCccccceEEeCCCccc
Confidence 36889999 87655555589999999999973
No 296
>KOG1253|consensus
Probab=95.16 E-value=0.017 Score=50.48 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=74.0
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc--cccCccc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS--VFKQKVD 122 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~--~~~~~~D 122 (216)
.++-+|||.-|+||.-++..++. +..+|++-|.+++.+...+.|++.++.. .++....|+ ...... .....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA--~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDA--NVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchH--HHHHHhccccccccc
Confidence 35679999999999999887765 2378999999999999999999999876 478888998 544332 2236899
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHhhcCCc
Q psy17460 123 TVIMNPPFGTRNCGIDLAFVQYAADISKV 151 (216)
Q Consensus 123 ~vi~npp~~~~~~~~~~~~~~~~l~~~~~ 151 (216)
+|=.|| |+. ...|++.|+...+.
T Consensus 186 vIDLDP-yGs-----~s~FLDsAvqav~~ 208 (525)
T KOG1253|consen 186 VIDLDP-YGS-----PSPFLDSAVQAVRD 208 (525)
T ss_pred eEecCC-CCC-----ccHHHHHHHHHhhc
Confidence 998876 654 34588887766544
No 297
>KOG2920|consensus
Probab=95.14 E-value=0.018 Score=47.03 Aligned_cols=39 Identities=31% Similarity=0.530 Sum_probs=35.3
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHH
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILD 86 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~ 86 (216)
..+++|||+|||+|..++.+...+...++..|.+.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 578999999999999999999998789999999987774
No 298
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.08 E-value=0.34 Score=41.79 Aligned_cols=126 Identities=11% Similarity=0.075 Sum_probs=77.1
Q ss_pred CEEEEecCCC-CHhHH-HHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcC
Q psy17460 51 KTVLDLGCGS-GILTF-GSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 51 ~~vlD~g~Gt-G~~~~-~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
++||-+|||. |.... .+++.+...|+..|.+.+..+.+...... +++...-|+.+.+-..... ..+|+||...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~~al~~li-~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADVDALVALI-KDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccChHHHHHHH-hcCCEEEEeC
Confidence 4689999963 33322 24556657999999998887776665433 6889999993332221111 4669999776
Q ss_pred CCCCCCCCCCHHHHHHHhhcCCceEEEeeCcch-HHHHHHHHHhcCccceeeeeeeecCCCcc
Q psy17460 129 PFGTRNCGIDLAFVQYAADISKVVYSLHKTSTR-ESILKKIQAFKNVEQVDVIAEMKYDLNQS 190 (216)
Q Consensus 129 p~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~-~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 190 (216)
|+... ...++.|++.+-....+...... ..+-..+.+- +...+.+.|+.++-.
T Consensus 77 p~~~~-----~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~A----git~v~~~G~dPGi~ 130 (389)
T COG1748 77 PPFVD-----LTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKA----GITAVLGCGFDPGIT 130 (389)
T ss_pred Cchhh-----HHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHc----CeEEEcccCcCcchH
Confidence 65532 25677777777763333333322 3333333433 567888888877653
No 299
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.61 E-value=0.24 Score=39.06 Aligned_cols=61 Identities=10% Similarity=0.011 Sum_probs=41.1
Q ss_pred CEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-cccCcccEEEEcCC
Q psy17460 51 KTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-VFKQKVDTVIMNPP 129 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~D~vi~npp 129 (216)
-++||+||=+.....- ..+.-.|+.||+++ . .-.+.++|+ .+.|.. ...++||+|.+..-
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns-----------~----~~~I~qqDF--m~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS-----------Q----HPGILQQDF--MERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCC-----------C----CCCceeecc--ccCCCCCCcccceeEEEEEEE
Confidence 5999999875544332 22223599999986 1 356899999 777542 23478999998653
Q ss_pred C
Q psy17460 130 F 130 (216)
Q Consensus 130 ~ 130 (216)
.
T Consensus 114 L 114 (219)
T PF11968_consen 114 L 114 (219)
T ss_pred E
Confidence 3
No 300
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.14 Score=43.35 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=38.0
Q ss_pred CCCEEEEecCCCCHhHHHHhHcC---------CCEEEEEeCChHHHHHHHHhhhHh
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLG---------ADFCFALECDKEILDIFIDNKNEF 95 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~---------~~~v~~iD~~~~~~~~~~~~~~~~ 95 (216)
.+-.++|+|+|+|.++..++... +.+++-||.|++....-+.+++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 45589999999999987766531 468999999999998888877654
No 301
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.55 E-value=0.41 Score=36.18 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=55.4
Q ss_pred ccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEE
Q psy17460 25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAIL 104 (216)
Q Consensus 25 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~ 104 (216)
.||--.+.-.+.++..+.... ..+.+|+=+||=|-...+.-......+++..|.|...-. .+- + .|+.
T Consensus 3 sQfwYs~~T~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~~-~-~F~f 70 (162)
T PF10237_consen 3 SQFWYSDETAEFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FGG-D-EFVF 70 (162)
T ss_pred cccccCHHHHHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cCC-c-ceEE
Confidence 454445566666766666531 245789998876666554441122368999999973322 121 2 3555
Q ss_pred ecccccccccccccCcccEEEEcCCCC
Q psy17460 105 FEINEKSLDSSVFKQKVDTVIMNPPFG 131 (216)
Q Consensus 105 ~d~~~~~~~~~~~~~~~D~vi~npp~~ 131 (216)
-|..+..-......++||+|++||||-
T Consensus 71 yD~~~p~~~~~~l~~~~d~vv~DPPFl 97 (162)
T PF10237_consen 71 YDYNEPEELPEELKGKFDVVVIDPPFL 97 (162)
T ss_pred CCCCChhhhhhhcCCCceEEEECCCCC
Confidence 555223222221237999999999994
No 302
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=94.23 E-value=0.089 Score=42.47 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=28.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHH
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFI 89 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~ 89 (216)
+..+++|++||+|+++..+... ...|+.-|+++..+...+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHH
Confidence 5679999999999999877664 358999999998876555
No 303
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=94.06 E-value=0.17 Score=35.32 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=30.4
Q ss_pred cccEEEEcCCCCCCCCCCC------------HHHHHHHhhcCCc-eEEEeeCcch--HHHHHHHHHhcC
Q psy17460 120 KVDTVIMNPPFGTRNCGID------------LAFVQYAADISKV-VYSLHKTSTR--ESILKKIQAFKN 173 (216)
Q Consensus 120 ~~D~vi~npp~~~~~~~~~------------~~~~~~~l~~~~~-ly~~~~~~~~--~~~~~~~~~~l~ 173 (216)
.||+|+.||||........ .-|++.+++++.. +-.+.+.+-. ....+..+++|-
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll~G~~~~I~P~~~l~~~~~~~~lR~~l~ 70 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLLNGYLSFITPNSFLKSGKYGKKLRKFLL 70 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHhCCeEEEEeChHHhCcCchHHHHHHHHh
Confidence 6999999999998621111 1267777777633 3334333322 334444455543
No 304
>PTZ00357 methyltransferase; Provisional
Probab=94.03 E-value=0.17 Score=46.46 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=68.1
Q ss_pred HhhcccCCCcccCccccCCHHHHHHHHHHHHh---------------------hcCC----CCCCEEEEecCCCCHhHHH
Q psy17460 12 QLTFNFSNPKVHLEQYHTPPHLAATILHTIQN---------------------NYND----IDGKTVLDLGCGSGILTFG 66 (216)
Q Consensus 12 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---------------------~~~~----~~~~~vlD~g~GtG~~~~~ 66 (216)
.++.-|+.+.+++.+|. ..+...+.+.... ..+. .....|+-+|+|-|-+.-.
T Consensus 640 ~TYEVFEKDpVKYdqYE--~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdr 717 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYR--EAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDE 717 (1072)
T ss_pred hhHHHHcCCcHHHHHHH--HHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHH
Confidence 34466777888888877 4455555443210 0000 0113699999999998644
Q ss_pred Hh---Hc-CC-CEEEEEeCChHHHHHHHHhhhH-hCCC--------ceEEEEeccccccccccc---------ccCcccE
Q psy17460 67 SI---LL-GA-DFCFALECDKEILDIFIDNKNE-FEIT--------NCDAILFEINEKSLDSSV---------FKQKVDT 123 (216)
Q Consensus 67 ~~---~~-~~-~~v~~iD~~~~~~~~~~~~~~~-~~~~--------~v~~~~~d~~~~~~~~~~---------~~~~~D~ 123 (216)
+. +. +. -+|++||.|++.+.....+..+ ...+ .|+++..|. .++.... .-+++|+
T Consensus 718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDM--R~W~~pe~~~s~~~P~~~gKaDI 795 (1072)
T PTZ00357 718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADG--RTIATAAENGSLTLPADFGLCDL 795 (1072)
T ss_pred HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcc--cccccccccccccccccccccce
Confidence 33 32 32 5899999997755444443211 1221 489999999 6664220 0037999
Q ss_pred EEEc--CCCC
Q psy17460 124 VIMN--PPFG 131 (216)
Q Consensus 124 vi~n--pp~~ 131 (216)
||+- -+|+
T Consensus 796 VVSELLGSFG 805 (1072)
T PTZ00357 796 IVSELLGSLG 805 (1072)
T ss_pred ehHhhhcccc
Confidence 9973 4555
No 305
>KOG2651|consensus
Probab=93.82 E-value=0.28 Score=41.91 Aligned_cols=57 Identities=16% Similarity=0.046 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHh
Q psy17460 35 ATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN 91 (216)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~ 91 (216)
+.+...+....+-.+-+.|+|+|+|-|.++..++....-.|.+||.|+...+.|++.
T Consensus 139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 344444443322224468999999999999888776556999999998776665553
No 306
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.45 E-value=0.63 Score=36.26 Aligned_cols=114 Identities=19% Similarity=0.091 Sum_probs=69.2
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHH----H--HHHHhhhHhCCCceEEEEecccccccccccc
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEIL----D--IFIDNKNEFEITNCDAILFEINEKSLDSSVF 117 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~----~--~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 117 (216)
...+|..|+|+-.|.|.++..++.. |+ +.|+++-.++... + ............|++.+-.+. ..+...
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~--~A~~~p-- 120 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL--VALGAP-- 120 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc--cccCCC--
Confidence 4568999999999999999877765 55 6788776554321 1 111111112222667777776 666533
Q ss_pred cCcccEEEEcCCCCCC-CCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeee
Q psy17460 118 KQKVDTVIMNPPFGTR-NCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMK 184 (216)
Q Consensus 118 ~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 184 (216)
+..|++..+.-||.+ .+-. ...+.....+.+.+.|+| +|.++++..
T Consensus 121 -q~~d~~~~~~~yhdmh~k~i-------------------~~~~A~~vna~vf~~LKP-GGv~~V~dH 167 (238)
T COG4798 121 -QKLDLVPTAQNYHDMHNKNI-------------------HPATAAKVNAAVFKALKP-GGVYLVEDH 167 (238)
T ss_pred -Ccccccccchhhhhhhcccc-------------------CcchHHHHHHHHHHhcCC-CcEEEEEec
Confidence 678888887777755 1111 122344555556667788 666665444
No 307
>KOG1099|consensus
Probab=92.98 E-value=0.26 Score=39.32 Aligned_cols=68 Identities=18% Similarity=0.081 Sum_probs=48.7
Q ss_pred CEEEEecCCCCHhHHHHhHc--C------C--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-----
Q psy17460 51 KTVLDLGCGSGILTFGSILL--G------A--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS----- 115 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~--~------~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~----- 115 (216)
++++|+++..|+.+-.+.+. . . .++++||+.+ ...++.|.-+++|+ +.....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~GV~qlq~DI--T~~stae~Ii~ 109 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIEGVIQLQGDI--TSASTAEAIIE 109 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccCceEEeeccc--CCHhHHHHHHH
Confidence 58999999999999777654 1 1 2399999976 33444788899999 553211
Q ss_pred -cccCcccEEEEcCCCC
Q psy17460 116 -VFKQKVDTVIMNPPFG 131 (216)
Q Consensus 116 -~~~~~~D~vi~npp~~ 131 (216)
..+++.|+|+|+-.=.
T Consensus 110 hfggekAdlVvcDGAPD 126 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPD 126 (294)
T ss_pred HhCCCCccEEEeCCCCC
Confidence 2336899999986533
No 308
>KOG1596|consensus
Probab=92.87 E-value=0.67 Score=37.30 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhc---CCCCCCEEEEecCCCCHhHHHHhHc-CC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460 33 LAATILHTIQNNY---NDIDGKTVLDLGCGSGILTFGSILL-GA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107 (216)
Q Consensus 33 ~~~~~~~~~~~~~---~~~~~~~vlD~g~GtG~~~~~~~~~-~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 107 (216)
++..++.-++.-+ -..+|.+||=+|+++|+....+..- |+ .-|+++|.++..=+.....+++ . +||-.+..|+
T Consensus 137 frSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-R-tNiiPIiEDA 214 (317)
T KOG1596|consen 137 FRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-R-TNIIPIIEDA 214 (317)
T ss_pred HHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-c-CCceeeeccC
Confidence 4445555544322 2347899999999999987666553 55 7899999987544433332222 2 2788888899
Q ss_pred cccccccc-cccCcccEEEEcCCC
Q psy17460 108 NEKSLDSS-VFKQKVDTVIMNPPF 130 (216)
Q Consensus 108 ~~~~~~~~-~~~~~~D~vi~npp~ 130 (216)
...... ..-..+|+||+|.+-
T Consensus 215 --rhP~KYRmlVgmVDvIFaDvaq 236 (317)
T KOG1596|consen 215 --RHPAKYRMLVGMVDVIFADVAQ 236 (317)
T ss_pred --CCchheeeeeeeEEEEeccCCC
Confidence 654321 112478999998654
No 309
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.80 E-value=0.23 Score=40.19 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcC---------CCEEEEEeCChHHHHHHHHhhhH
Q psy17460 34 AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG---------ADFCFALECDKEILDIFIDNKNE 94 (216)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~---------~~~v~~iD~~~~~~~~~~~~~~~ 94 (216)
+..++............-.|+|+|+|+|.++..++..- ..+++-||+|+.+.+.-++.+..
T Consensus 3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 34444545443112223699999999999998776541 14899999999999888888765
No 310
>KOG0024|consensus
Probab=92.55 E-value=0.29 Score=40.93 Aligned_cols=45 Identities=27% Similarity=0.219 Sum_probs=38.0
Q ss_pred CCCCCCEEEEecCC-CCHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460 46 NDIDGKTVLDLGCG-SGILTFGSILL-GADFCFALECDKEILDIFID 90 (216)
Q Consensus 46 ~~~~~~~vlD~g~G-tG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~ 90 (216)
....|.+||-+|+| .|..+...++. |+++|+.+|++++.++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 44678999999999 56666666664 78999999999999999998
No 311
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.53 E-value=0.78 Score=31.98 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=41.5
Q ss_pred CCCCHhHHHHhHc---CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCC
Q psy17460 58 CGSGILTFGSILL---GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPP 129 (216)
Q Consensus 58 ~GtG~~~~~~~~~---~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp 129 (216)
||.|.++..+++. +...|+.+|.+++.++.++.. .+.++.||+.+.+......-+..|.+++.-+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 5666776665543 234899999999887776654 3679999994433333333367888887543
No 312
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.53 E-value=1.6 Score=37.07 Aligned_cols=74 Identities=22% Similarity=0.182 Sum_probs=47.9
Q ss_pred CCCCCCEEEEecCC-CCHhHHHHhH-cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460 46 NDIDGKTVLDLGCG-SGILTFGSIL-LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 46 ~~~~~~~vlD~g~G-tG~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
...+|++|+-.|+| .|.+++.+++ .| .+|+++|.+++..+.|++.-.. .++...- .+..... .+.||+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd------~~i~~~~--~~~~~~~-~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD------HVINSSD--SDALEAV-KEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc------EEEEcCC--chhhHHh-HhhCcE
Confidence 45689999999998 3335666777 46 5999999999999888776321 2333221 1111111 134999
Q ss_pred EEEcCC
Q psy17460 124 VIMNPP 129 (216)
Q Consensus 124 vi~npp 129 (216)
|+..-|
T Consensus 233 ii~tv~ 238 (339)
T COG1064 233 IIDTVG 238 (339)
T ss_pred EEECCC
Confidence 997665
No 313
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.36 E-value=0.76 Score=39.05 Aligned_cols=126 Identities=12% Similarity=0.040 Sum_probs=66.4
Q ss_pred CCCCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccc--cccccccccCcc
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE--KSLDSSVFKQKV 121 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~ 121 (216)
+.+..++|||+|.|.|+-..++-...+ ..++-++.|+-.-+.......+.......-...|+.. ..++.. ..|
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a---d~y 186 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA---DLY 186 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc---cee
Confidence 556788999999999987776655544 6788888888555544444333332222223333310 344433 578
Q ss_pred cEEEEcCCCCCC-CCCCCHHHHHHHhhcCC--ceEEEeeCcc--hHHHHHHHHHh-cCc
Q psy17460 122 DTVIMNPPFGTR-NCGIDLAFVQYAADISK--VVYSLHKTST--RESILKKIQAF-KNV 174 (216)
Q Consensus 122 D~vi~npp~~~~-~~~~~~~~~~~~l~~~~--~ly~~~~~~~--~~~~~~~~~~~-l~~ 174 (216)
++++.-.-.-.. +...-..+++..+.... ....+....+ ..+++..++.. |.+
T Consensus 187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~~ 245 (484)
T COG5459 187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLAP 245 (484)
T ss_pred ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhcC
Confidence 877753222222 22222225555555443 2333333333 45555555554 455
No 314
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=91.56 E-value=0.75 Score=33.97 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=32.5
Q ss_pred EecCCCC--HhHHHHh--HcCC-CEEEEEeCChHHHHHHHHh--hhHhCCC-ceEEEEecc
Q psy17460 55 DLGCGSG--ILTFGSI--LLGA-DFCFALECDKEILDIFIDN--KNEFEIT-NCDAILFEI 107 (216)
Q Consensus 55 D~g~GtG--~~~~~~~--~~~~-~~v~~iD~~~~~~~~~~~~--~~~~~~~-~v~~~~~d~ 107 (216)
|+|++.| .....++ ..++ .+|+++|.+|..++..+.+ +..+... .++++....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 5555443 3333 7899999999999999998 5544332 366665554
No 315
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=91.40 E-value=0.57 Score=37.83 Aligned_cols=102 Identities=12% Similarity=0.025 Sum_probs=53.7
Q ss_pred EEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcccEEEEcCCCC
Q psy17460 54 LDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVDTVIMNPPFG 131 (216)
Q Consensus 54 lD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D~vi~npp~~ 131 (216)
+..-.|+-.++..+.+.. .+.+.+|+.+.-.+..+.++.... ++.+...|. .+-... .+.+.==+|++||||.
T Consensus 62 l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~~--~v~v~~~DG--~~~l~allPP~~rRglVLIDPpYE 136 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQ-DRLVLFELHPQDFEALKKNFRRDR--RVRVHHRDG--YEGLKALLPPPERRGLVLIDPPYE 136 (245)
T ss_dssp --EEE-HHHHHHHHS-TT-SEEEEE--SHHHHHHHTTS--TTS---EEEE-S-H--HHHHHHH-S-TTS-EEEEE-----
T ss_pred cCcCCCCHHHHHHhCCcc-ceEEEEecCchHHHHHHHHhccCC--ccEEEeCch--hhhhhhhCCCCCCCeEEEECCCCC
Confidence 667777777777766653 599999999999999988876533 799999999 773211 1114567999999998
Q ss_pred CC-CCCCCHHHHHHHhhcCCc-eE-EEeeCcc
Q psy17460 132 TR-NCGIDLAFVQYAADISKV-VY-SLHKTST 160 (216)
Q Consensus 132 ~~-~~~~~~~~~~~~l~~~~~-ly-~~~~~~~ 160 (216)
.. +.....+.+.++++.... +| ..++..+
T Consensus 137 ~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~ 168 (245)
T PF04378_consen 137 QKDDYQRVVDALAKALKRWPTGVYAIWYPIKD 168 (245)
T ss_dssp STTHHHHHHHHHHHHHHH-TTSEEEEEEEESS
T ss_pred CchHHHHHHHHHHHHHHhcCCcEEEEEeeccc
Confidence 66 222234455566655544 33 3444444
No 316
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.03 E-value=4.9 Score=30.44 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=59.3
Q ss_pred ecCCCCHhHHHHhHc-C-CCEEEEEeCCh--HHHHH---HHHhhhHhCCCceE-EEEecccccccccccccCcccEEEEc
Q psy17460 56 LGCGSGILTFGSILL-G-ADFCFALECDK--EILDI---FIDNKNEFEITNCD-AILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 56 ~g~GtG~~~~~~~~~-~-~~~v~~iD~~~--~~~~~---~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
+|=|.-+++..+++. + +.++++.-.+. +..+. +..|+....-.++. ...-|+.+..-........||.|+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 444555556666654 4 45677655443 33322 33455444222333 34556622222222244789999999
Q ss_pred CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCC
Q psy17460 128 PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLN 188 (216)
Q Consensus 128 pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 188 (216)
-|..-........-+..-..+. ..+++.+..+|.+ +|.+.+...-..+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll------------~~Ff~Sa~~~L~~-~G~IhVTl~~~~p 130 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELL------------RGFFKSASQLLKP-DGEIHVTLKDGQP 130 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHH------------HHHHHHHHHhcCC-CCEEEEEeCCCCC
Confidence 9987521111111111111111 2455666777777 7777765554433
No 317
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.65 E-value=8.3 Score=31.88 Aligned_cols=121 Identities=13% Similarity=0.142 Sum_probs=62.3
Q ss_pred CCCCEEEEecCCCCHh-HHH--HhHcCCCEEEEEeCChH---HHHHHHHhhhHhCCCceEEEEecccccccccccccCcc
Q psy17460 48 IDGKTVLDLGCGSGIL-TFG--SILLGADFCFALECDKE---ILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKV 121 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~-~~~--~~~~~~~~v~~iD~~~~---~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 121 (216)
.++++++-+|+| |.- ++. ++..|..+|+.++.++. ..+.....+....- .+.+...|+.+.+-. ......+
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~-~~~~~~~d~~~~~~~-~~~~~~~ 200 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVP-ECIVNVYDLNDTEKL-KAEIASS 200 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCC-CceeEEechhhhhHH-HhhhccC
Confidence 467889999997 542 222 44567667999999863 22222222222111 334445555211111 0011357
Q ss_pred cEEEEcCCCCCCCCCCCHHH-HHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460 122 DTVIMNPPFGTRNCGIDLAF-VQYAADISKVVYSLHKTSTRESILKKIQAF 171 (216)
Q Consensus 122 D~vi~npp~~~~~~~~~~~~-~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~ 171 (216)
|+||.+=|-+.......... ....+.....+|.+.+....-.+++.+++.
T Consensus 201 DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~ 251 (289)
T PRK12548 201 DILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAEAA 251 (289)
T ss_pred CEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHHHC
Confidence 99998877765411111001 012233223377777766667777777765
No 318
>KOG3924|consensus
Probab=90.20 E-value=0.67 Score=39.78 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhH-------hCCC--ce
Q psy17460 31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNE-------FEIT--NC 100 (216)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~-------~~~~--~v 100 (216)
+...+.+.+.+.. +...+++...|+|.|.|.+....+.+ +...-+|+++.+..-+.+..+.+. .|.. .+
T Consensus 175 E~~~~ql~si~dE-l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~ 253 (419)
T KOG3924|consen 175 ETQLEQLRSIVDE-LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI 253 (419)
T ss_pred hhhHHHHHHHHHH-hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce
Confidence 3344455444443 36678889999999999998775555 457889999887777666555333 3432 58
Q ss_pred EEEEecccccccccc-cccCcccEEEEcC
Q psy17460 101 DAILFEINEKSLDSS-VFKQKVDTVIMNP 128 (216)
Q Consensus 101 ~~~~~d~~~~~~~~~-~~~~~~D~vi~np 128 (216)
+.+.+++ ...... ......++|++|-
T Consensus 254 ~~i~gsf--~~~~~v~eI~~eatvi~vNN 280 (419)
T KOG3924|consen 254 ETIHGSF--LDPKRVTEIQTEATVIFVNN 280 (419)
T ss_pred eeccccc--CCHHHHHHHhhcceEEEEec
Confidence 8999999 554321 1224678888764
No 319
>PRK05867 short chain dehydrogenase; Provisional
Probab=90.02 E-value=1.9 Score=34.33 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=52.2
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~ 118 (216)
.+++++|-.|++.|. ++..+++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-... ..-
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGG-KVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 367899999976654 2233555565 899999998877766655544442 67888899832221100 011
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+.+|.+|.|....
T Consensus 85 g~id~lv~~ag~~ 97 (253)
T PRK05867 85 GGIDIAVCNAGII 97 (253)
T ss_pred CCCCEEEECCCCC
Confidence 4789999887654
No 320
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=90.02 E-value=3.1 Score=33.66 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=72.6
Q ss_pred EEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCcccEEEEcCCCC
Q psy17460 54 LDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVDTVIMNPPFG 131 (216)
Q Consensus 54 lD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D~vi~npp~~ 131 (216)
|..-||+-.++..+.+.. .++.+.|+.|.=....+.++.. ..++.+..+|- ..-... .+++.=-+|+.||||.
T Consensus 93 l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~~--d~~vrv~~~DG--~~~l~a~LPP~erRglVLIDPPfE 167 (279)
T COG2961 93 LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFAG--DRRVRVLRGDG--FLALKAHLPPKERRGLVLIDPPFE 167 (279)
T ss_pred cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhCC--CcceEEEecCc--HHHHhhhCCCCCcceEEEeCCCcc
Confidence 899999999988777764 4899999999999999998873 33899999997 553211 1225678999999997
Q ss_pred CCC-CCCCHHHHHHHhhcCCc-eEEE-eeCcchHHHHHHHHH
Q psy17460 132 TRN-CGIDLAFVQYAADISKV-VYSL-HKTSTRESILKKIQA 170 (216)
Q Consensus 132 ~~~-~~~~~~~~~~~l~~~~~-ly~~-~~~~~~~~~~~~~~~ 170 (216)
..+ .....+-+.++++-... +|.+ ++..+...+.....+
T Consensus 168 ~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~ 209 (279)
T COG2961 168 LKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRA 209 (279)
T ss_pred cccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHH
Confidence 551 11112233344433333 5544 444455555444443
No 321
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.01 E-value=1.8 Score=34.74 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=48.8
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHH-HHHHHHhhhHhCCCceEEEEecccccccc---cc--ccc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEI-LDIFIDNKNEFEITNCDAILFEINEKSLD---SS--VFK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~-~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~--~~~ 118 (216)
.+++||-.|++.|. +.. +++.|..+|+.++.+++. ++.+.+.+...+..++.++.+|+.+.+-. .. ...
T Consensus 7 ~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 56789998985544 433 334443589999888764 55544444443322688999998332211 01 011
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+..|+++.|....
T Consensus 86 g~id~li~~ag~~ 98 (253)
T PRK07904 86 GDVDVAIVAFGLL 98 (253)
T ss_pred CCCCEEEEeeecC
Confidence 4799998876543
No 322
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.65 E-value=1.5 Score=40.61 Aligned_cols=77 Identities=10% Similarity=0.004 Sum_probs=45.9
Q ss_pred CCCEEEEecCCCCHhHHHHhHcC-------------CCEEEEEeCCh---HHHHHHH-----------HhhhH-----hC
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLG-------------ADFCFALECDK---EILDIFI-----------DNKNE-----FE 96 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~-------------~~~v~~iD~~~---~~~~~~~-----------~~~~~-----~~ 96 (216)
+.-+|+|+|-|+|...+...+.. .-+++++|..| +.+..+. ..... .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34699999999999765544211 13788999754 2222221 11111 12
Q ss_pred C-------C--ceEEEEecccccccccccccCcccEEEEcC
Q psy17460 97 I-------T--NCDAILFEINEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 97 ~-------~--~v~~~~~d~~~~~~~~~~~~~~~D~vi~np 128 (216)
+ . .++++.||+ .+...... ..+|+++.|+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~--~~~~~~~~-~~~d~~~lD~ 174 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDA--NELLPQLD-ARADAWFLDG 174 (662)
T ss_pred ceEEEecCCcEEEEEEecCH--HHHHHhcc-ccccEEEeCC
Confidence 1 1 467888999 65443321 4699999985
No 323
>PRK08339 short chain dehydrogenase; Provisional
Probab=89.62 E-value=2.8 Score=33.84 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=51.0
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEeccccccccccc-----cc
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSSV-----FK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~-----~~ 118 (216)
.+++++|-.|++.|. ++..+++.|. +|+.++.+++..+.+...+... +. ++.++.+|+.+.+-.... .-
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNV-DVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEecCCCHHHHHHHHHHHHhh
Confidence 367888988877665 2344555665 8999999987776665554332 22 688899998332211100 01
Q ss_pred CcccEEEEcCCC
Q psy17460 119 QKVDTVIMNPPF 130 (216)
Q Consensus 119 ~~~D~vi~npp~ 130 (216)
+.+|+++.|.-.
T Consensus 84 g~iD~lv~nag~ 95 (263)
T PRK08339 84 GEPDIFFFSTGG 95 (263)
T ss_pred CCCcEEEECCCC
Confidence 468999988643
No 324
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=89.26 E-value=2.3 Score=33.54 Aligned_cols=89 Identities=11% Similarity=0.157 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEecCCCC----HhHHHHhHc-CCCEEEEEeCChHHHHHHHHhhhHhCCCc-eEEEEe
Q psy17460 32 HLAATILHTIQNNYNDIDGKTVLDLGCGSG----ILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITN-CDAILF 105 (216)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG----~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~~~~~~~~-v~~~~~ 105 (216)
..+|.+-.+... ..-+.+++..|+-| ++++.+|.+ -.+++++|..++..+...++.+...++.+ ++|+.|
T Consensus 28 ~~aEfISAlAAG----~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg 103 (218)
T PF07279_consen 28 GVAEFISALAAG----WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVG 103 (218)
T ss_pred CHHHHHHHHhcc----ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEec
Confidence 355555555543 25568999866543 234443333 23689999999988888888887777654 699999
Q ss_pred cccccc-cccccccCcccEEEEcC
Q psy17460 106 EINEKS-LDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 106 d~~~~~-~~~~~~~~~~D~vi~np 128 (216)
+. .+ ..... ...|+++.|-
T Consensus 104 ~~--~e~~~~~~--~~iDF~vVDc 123 (218)
T PF07279_consen 104 EA--PEEVMPGL--KGIDFVVVDC 123 (218)
T ss_pred CC--HHHHHhhc--cCCCEEEEeC
Confidence 85 33 33232 5789988765
No 325
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.96 E-value=2.2 Score=33.67 Aligned_cols=77 Identities=16% Similarity=0.060 Sum_probs=45.1
Q ss_pred CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCCh------------------HHHHHHHHhhhHhCCC-ceEEEEecc
Q psy17460 49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECDK------------------EILDIFIDNKNEFEIT-NCDAILFEI 107 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~~------------------~~~~~~~~~~~~~~~~-~v~~~~~d~ 107 (216)
...+|+-+||| .|+. +..++..|..+++.+|.+. .-.+.+.++++...-. +++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 56789999998 4664 4557777778899999872 2233444444433221 455565555
Q ss_pred cccccccccccCcccEEEEc
Q psy17460 108 NEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 108 ~~~~~~~~~~~~~~D~vi~n 127 (216)
........-..+|+|+..
T Consensus 107 --~~~~~~~~~~~~DvVI~a 124 (212)
T PRK08644 107 --DEDNIEELFKDCDIVVEA 124 (212)
T ss_pred --CHHHHHHHHcCCCEEEEC
Confidence 221111111579999954
No 326
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.93 E-value=2.4 Score=34.48 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460 48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~ 118 (216)
..++++|-.|++.|.- +..++..|. +|+.++.++..++.....+...+. ++.++.+|+.+.+-... ..-
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4678899888765542 233445565 799999988777665555544343 57888999833221111 011
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+..|++|.|....
T Consensus 82 g~id~li~nAg~~ 94 (275)
T PRK05876 82 GHVDVVFSNAGIV 94 (275)
T ss_pred CCCCEEEECCCcC
Confidence 4689999987653
No 327
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=88.68 E-value=2.1 Score=38.63 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=60.1
Q ss_pred CCCCEEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEecccccccccc-cccCcc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSS-VFKQKV 121 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~-~~~~~~ 121 (216)
..|++||-.| |+|+++.++++ .++.+++-+|.|+..+......+... +..++.++.||+.+.+.... ...-++
T Consensus 248 ~~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 248 LTGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred cCCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 4678888777 56888766554 46789999999999999888887653 32278999999955543322 122469
Q ss_pred cEEEEcCCCCC
Q psy17460 122 DTVIMNPPFGT 132 (216)
Q Consensus 122 D~vi~npp~~~ 132 (216)
|+||--..|-+
T Consensus 327 d~VfHAAA~KH 337 (588)
T COG1086 327 DIVFHAAALKH 337 (588)
T ss_pred ceEEEhhhhcc
Confidence 99997665554
No 328
>PRK05866 short chain dehydrogenase; Provisional
Probab=88.26 E-value=3.4 Score=34.00 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=50.0
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.+++||-.|++.|. +.. +++.|. +|+.++.+++.++.....+...+. .+.++.+|+.+.+..... .-
T Consensus 39 ~~k~vlItGasggI-G~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 39 TGKRILLTGASSGI-GEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56788888875544 333 444554 899999998877666555544333 577889998332211110 11
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+..|++|.|.-..
T Consensus 116 g~id~li~~AG~~ 128 (293)
T PRK05866 116 GGVDILINNAGRS 128 (293)
T ss_pred CCCCEEEECCCCC
Confidence 4789999886543
No 329
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=88.04 E-value=8.3 Score=30.89 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=52.3
Q ss_pred CCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460 49 DGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ 119 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~ 119 (216)
+++++|-.|++.|.- +..++..|. +|+.++.+++.++.....+...+. ++.++.+|+.+.+-.... .-+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 678899998876552 233555565 788889988877766666654443 688899999322211110 114
Q ss_pred cccEEEEcCCCC
Q psy17460 120 KVDTVIMNPPFG 131 (216)
Q Consensus 120 ~~D~vi~npp~~ 131 (216)
.+|.++.|....
T Consensus 87 ~id~li~~ag~~ 98 (265)
T PRK07097 87 VIDILVNNAGII 98 (265)
T ss_pred CCCEEEECCCCC
Confidence 689999887654
No 330
>PRK06139 short chain dehydrogenase; Provisional
Probab=88.01 E-value=3.5 Score=34.77 Aligned_cols=82 Identities=18% Similarity=0.213 Sum_probs=52.7
Q ss_pred CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
..+++||-.|++.|.- +..++..|. +|+.++.+++.++.....+...+. ++.++..|+.+.+-.... ..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3677888888755442 233555565 899999999888777666655554 677888898332211110 11
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+.+|++|.|.-..
T Consensus 83 g~iD~lVnnAG~~ 95 (330)
T PRK06139 83 GRIDVWVNNVGVG 95 (330)
T ss_pred CCCCEEEECCCcC
Confidence 4689999987543
No 331
>PRK06194 hypothetical protein; Provisional
Probab=87.77 E-value=2.8 Score=34.08 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=48.9
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.++++|-.|++ |.++.. ++..|. +|+.+|.+++..+.....+...+. ++.++.+|+.+.+-.... .-
T Consensus 5 ~~k~vlVtGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 5 AGKVAVITGAA-SGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCEEEEeCCc-cHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56788877754 444444 444554 899999988766655544443333 688899999332211110 01
Q ss_pred CcccEEEEcCCCCC
Q psy17460 119 QKVDTVIMNPPFGT 132 (216)
Q Consensus 119 ~~~D~vi~npp~~~ 132 (216)
+.+|+|+.|.-...
T Consensus 82 g~id~vi~~Ag~~~ 95 (287)
T PRK06194 82 GAVHLLFNNAGVGA 95 (287)
T ss_pred CCCCEEEECCCCCC
Confidence 35799998876543
No 332
>PRK07063 short chain dehydrogenase; Provisional
Probab=87.40 E-value=4 Score=32.59 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=50.7
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh--CCCceEEEEeccccccccccc------
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEF--EITNCDAILFEINEKSLDSSV------ 116 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~------ 116 (216)
..++++|-.|++.|. ++..+++.|. +|+.++.+++..+.....+... +. ++.++.+|+.+.+-....
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGA-RVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCc-eEEEEEccCCCHHHHHHHHHHHHH
Confidence 367889988876544 2233445565 8999999988777666655442 22 688899998332211110
Q ss_pred ccCcccEEEEcCCC
Q psy17460 117 FKQKVDTVIMNPPF 130 (216)
Q Consensus 117 ~~~~~D~vi~npp~ 130 (216)
.-+.+|.+|.|...
T Consensus 83 ~~g~id~li~~ag~ 96 (260)
T PRK07063 83 AFGPLDVLVNNAGI 96 (260)
T ss_pred HhCCCcEEEECCCc
Confidence 11468999988654
No 333
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=87.07 E-value=0.89 Score=42.32 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=37.4
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhh
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNK 92 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~ 92 (216)
..+..++|+++|-|++.+++++.|. .|+++|.+|-+.-..+..+
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavl 132 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVL 132 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHHHHHH
Confidence 4567899999999999999999995 9999999998876555543
No 334
>PRK05854 short chain dehydrogenase; Provisional
Probab=86.89 E-value=7 Score=32.48 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=50.7
Q ss_pred CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEecccccccccc------cc
Q psy17460 48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDSS------VF 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~------~~ 117 (216)
..+++++-.|++.|.- +..+++.|. +|+.+..+.+..+.+...+....- .++.++.+|+.+.+-... ..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 3678899888766552 233455565 899999888776666555543221 168889999933221110 01
Q ss_pred cCcccEEEEcCCC
Q psy17460 118 KQKVDTVIMNPPF 130 (216)
Q Consensus 118 ~~~~D~vi~npp~ 130 (216)
....|++|.|.-.
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 1468999988654
No 335
>PRK09291 short chain dehydrogenase; Provisional
Probab=86.74 E-value=5.2 Score=31.76 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=46.4
Q ss_pred CEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 51 KTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
++||-.|++ |.++..+ +..|. +|++++.++.............+. ++.++.+|+.+.+-.........|.||.
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 467877764 4444433 34454 899998887665555444443343 6888999993322111111147999998
Q ss_pred cCCCC
Q psy17460 127 NPPFG 131 (216)
Q Consensus 127 npp~~ 131 (216)
|..+.
T Consensus 80 ~ag~~ 84 (257)
T PRK09291 80 NAGIG 84 (257)
T ss_pred CCCcC
Confidence 86543
No 336
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=86.74 E-value=4.5 Score=29.70 Aligned_cols=81 Identities=20% Similarity=0.105 Sum_probs=50.8
Q ss_pred EEEEecCCCCH---hHHHHhHcCCCEEEEEeCC--hHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCc
Q psy17460 52 TVLDLGCGSGI---LTFGSILLGADFCFALECD--KEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQK 120 (216)
Q Consensus 52 ~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~--~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~ 120 (216)
.+|=.|+++|. ++..+++.|...|+.+..+ .+..+.....+...+ .++.++.+|+.+.+-... .....
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 56667766554 2334555566788999988 555555555555445 389999999833221111 12268
Q ss_pred ccEEEEcCCCCCC
Q psy17460 121 VDTVIMNPPFGTR 133 (216)
Q Consensus 121 ~D~vi~npp~~~~ 133 (216)
+|++|.|......
T Consensus 81 ld~li~~ag~~~~ 93 (167)
T PF00106_consen 81 LDILINNAGIFSD 93 (167)
T ss_dssp ESEEEEECSCTTS
T ss_pred ccccccccccccc
Confidence 9999998877654
No 337
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.64 E-value=4.7 Score=31.75 Aligned_cols=81 Identities=10% Similarity=0.028 Sum_probs=49.3
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.+++||-.|+ +|.++.. +++.|. +|++++.++.........+...+. ++.++.+|+.+.+-.... .-
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGG-KARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5678887775 4555544 344454 899999987666555554444332 588999999332211110 11
Q ss_pred CcccEEEEcCCCCC
Q psy17460 119 QKVDTVIMNPPFGT 132 (216)
Q Consensus 119 ~~~D~vi~npp~~~ 132 (216)
..+|.|+.+.....
T Consensus 82 ~~~d~vi~~ag~~~ 95 (251)
T PRK12826 82 GRLDILVANAGIFP 95 (251)
T ss_pred CCCCEEEECCCCCC
Confidence 36899998875543
No 338
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.53 E-value=1.6 Score=37.19 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=35.6
Q ss_pred CCCEEEEecCC-CCHhHHHHhHc-CCCEEEEEeCChHHHHHHHHhh
Q psy17460 49 DGKTVLDLGCG-SGILTFGSILL-GADFCFALECDKEILDIFIDNK 92 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~~ 92 (216)
++.+|+-+||| .|.++..+++. |+..|+++|.+++-++.|++..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 44489999999 46666666664 6789999999999999998854
No 339
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=86.29 E-value=5.8 Score=38.81 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=72.9
Q ss_pred CCCEEEEecCC-CCHhHHH-HhHcCCC-------------EEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc
Q psy17460 49 DGKTVLDLGCG-SGILTFG-SILLGAD-------------FCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD 113 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~~~~-~~~~~~~-------------~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 113 (216)
..++|+-+||| .|..... ++..... .|+..|.+++..+.+.... ++++.+..|+ .+..
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~-----~~~~~v~lDv--~D~e 640 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI-----ENAEAVQLDV--SDSE 640 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc-----CCCceEEeec--CCHH
Confidence 35689999997 3554433 4333222 3788899886665544432 1456677776 3322
Q ss_pred cccc-cCcccEEEEcCCCCCCCCCCCHHHHHHHhhcCCceEEEee-CcchHHHHHHHHHhcCccceeeeeeeecCCCc
Q psy17460 114 SSVF-KQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHK-TSTRESILKKIQAFKNVEQVDVIAEMKYDLNQ 189 (216)
Q Consensus 114 ~~~~-~~~~D~vi~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 189 (216)
.... -...|+|++..|+.. +......|++.+..+++.-. ......+.+.+.+- +..++.++++..+-
T Consensus 641 ~L~~~v~~~DaVIsalP~~~-----H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~A----GV~~m~e~GlDPGi 709 (1042)
T PLN02819 641 SLLKYVSQVDVVISLLPASC-----HAVVAKACIELKKHLVTASYVSEEMSALDSKAKEA----GITILCEMGLDPGI 709 (1042)
T ss_pred HHHHhhcCCCEEEECCCchh-----hHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHc----CCEEEECCccCHHH
Confidence 1110 035999998888742 34567788888877554431 11234444444443 66788888855443
No 340
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.02 E-value=11 Score=27.25 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=34.1
Q ss_pred CCCEEEEecCCCCH-hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCGSGI-LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~GtG~-~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
+..+|+|+|.|.=. .+..+.+.|. .|+++|+++. ++. . .+.++..|+ ++.....- ...|+|++
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~-~---g~~~v~DDi--f~P~l~iY-~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP-E---GVNFVVDDI--FNPNLEIY-EGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---S--SS--HHHH-TTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc-c---Ccceeeecc--cCCCHHHh-cCCcEEEE
Confidence 33499999999776 4566777775 8999999985 222 1 578999999 66432211 46677774
No 341
>PRK07478 short chain dehydrogenase; Provisional
Probab=85.98 E-value=5.5 Score=31.64 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=49.9
Q ss_pred CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460 49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ 119 (216)
Q Consensus 49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~ 119 (216)
.++++|-.|++.|. ++..+++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+-.... .-+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 56788888776543 2233445565 899999988777666555544443 678888998332211100 114
Q ss_pred cccEEEEcCCC
Q psy17460 120 KVDTVIMNPPF 130 (216)
Q Consensus 120 ~~D~vi~npp~ 130 (216)
.+|.+|.|...
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 78999988754
No 342
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.91 E-value=2.6 Score=35.69 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=34.9
Q ss_pred CCCCCCEEEEecCC-CCHhHHHHhH-cCCCEEEEEeCChHHHHHHHHh
Q psy17460 46 NDIDGKTVLDLGCG-SGILTFGSIL-LGADFCFALECDKEILDIFIDN 91 (216)
Q Consensus 46 ~~~~~~~vlD~g~G-tG~~~~~~~~-~~~~~v~~iD~~~~~~~~~~~~ 91 (216)
+..+|..|.-+||| .|..++.-++ .++.+++++|+++..+++|++.
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 44678889999887 4545555443 5778999999999999888764
No 343
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=85.40 E-value=6.5 Score=30.97 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=49.0
Q ss_pred CCCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
+++++|-.|++ |.++..+ ++.|. +|+.++.+++....+...+...+. ++.++.+|+.+.+-.... ..
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGG-NAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46778888864 4444443 34454 899999988776666555544332 688999998322211110 01
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
...|.+|.+....
T Consensus 79 ~~~d~vi~~ag~~ 91 (250)
T TIGR03206 79 GPVDVLVNNAGWD 91 (250)
T ss_pred CCCCEEEECCCCC
Confidence 3589999887653
No 344
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.33 E-value=4.8 Score=37.00 Aligned_cols=67 Identities=12% Similarity=0.024 Sum_probs=43.2
Q ss_pred EEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 52 TVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.|+=+| -|.++..+++ .+ ..++.+|.|++.++.+++. ...++.||+.+.+......-+..|.+++.
T Consensus 402 ~vII~G--~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 402 QVIIVG--FGRFGQVIGRLLMANK-MRITVLERDISAVNLMRKY-------GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CEEEec--CchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhC-------CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 355545 5555544433 33 4899999999998887642 46799999954444433333678888874
Q ss_pred C
Q psy17460 128 P 128 (216)
Q Consensus 128 p 128 (216)
-
T Consensus 472 ~ 472 (601)
T PRK03659 472 C 472 (601)
T ss_pred e
Confidence 4
No 345
>KOG0022|consensus
Probab=85.17 E-value=2.6 Score=35.44 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=33.4
Q ss_pred CCCCCEEEEecCCCCHhH-HHHhH-cCCCEEEEEeCChHHHHHHHHh
Q psy17460 47 DIDGKTVLDLGCGSGILT-FGSIL-LGADFCFALECDKEILDIFIDN 91 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~-~~~~~-~~~~~v~~iD~~~~~~~~~~~~ 91 (216)
..+|..+.-.|+|.=.++ ..-++ .|+++++|||++++-.+.|+..
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 357788888888754444 44333 4789999999999999888764
No 346
>PRK08643 acetoin reductase; Validated
Probab=84.95 E-value=15 Score=29.06 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=48.1
Q ss_pred CCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460 50 GKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ 119 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~ 119 (216)
++++|-.|+..| ++.. +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-... ..-+
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456777775544 4433 444454 899999988777666655544333 67888999933221101 0114
Q ss_pred cccEEEEcCCCC
Q psy17460 120 KVDTVIMNPPFG 131 (216)
Q Consensus 120 ~~D~vi~npp~~ 131 (216)
..|.+|.|..+.
T Consensus 79 ~id~vi~~ag~~ 90 (256)
T PRK08643 79 DLNVVVNNAGVA 90 (256)
T ss_pred CCCEEEECCCCC
Confidence 689999887553
No 347
>KOG0725|consensus
Probab=84.87 E-value=10 Score=31.02 Aligned_cols=82 Identities=21% Similarity=0.140 Sum_probs=60.2
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC--ceEEEEecccccccccc-------
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT--NCDAILFEINEKSLDSS------- 115 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~------- 115 (216)
..++++|-.|.++|. .+..+++.|+ +|+..+.+++.++.....+...+.. ++..+.+|+ .+.+..
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv--~~~~~~~~l~~~~ 82 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDV--SKEVDVEKLVEFA 82 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcC--CCHHHHHHHHHHH
Confidence 578999999999887 3456777776 8999999999988877776655542 588999999 543210
Q ss_pred -cc-cCcccEEEEcCCCCC
Q psy17460 116 -VF-KQKVDTVIMNPPFGT 132 (216)
Q Consensus 116 -~~-~~~~D~vi~npp~~~ 132 (216)
.. .++.|+++.|.-...
T Consensus 83 ~~~~~GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 83 VEKFFGKIDILVNNAGALG 101 (270)
T ss_pred HHHhCCCCCEEEEcCCcCC
Confidence 01 267999998865544
No 348
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.76 E-value=3.4 Score=32.25 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=25.6
Q ss_pred CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCC
Q psy17460 49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECD 81 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~ 81 (216)
.+.+|+-+||| .|+. +..++..|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 56789999998 4554 455777787899999977
No 349
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=84.67 E-value=4 Score=34.67 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=45.9
Q ss_pred CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCCh---------------------HHHHHHHHhhhHhCCC-ceEEEE
Q psy17460 49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECDK---------------------EILDIFIDNKNEFEIT-NCDAIL 104 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~~---------------------~~~~~~~~~~~~~~~~-~v~~~~ 104 (216)
.+.+|+-+||| .|+. +..++..|..+++.+|.|. .-.+.+++.++...-. +++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 56789999998 4553 3446777778999999874 1233444444443221 566676
Q ss_pred ecccccccccccccCcccEEEEc
Q psy17460 105 FEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 105 ~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.++ ..-.....-..+|+|+..
T Consensus 103 ~~~--~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 103 TDV--TVEELEELVKEVDLIIDA 123 (338)
T ss_pred ccC--CHHHHHHHhcCCCEEEEc
Confidence 666 321111111578999864
No 350
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=84.56 E-value=6.8 Score=31.62 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=48.9
Q ss_pred CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460 49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ 119 (216)
Q Consensus 49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~ 119 (216)
++++++-.|++.|. ++..++..|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-.... .-+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGG-EALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 57788888876554 1233445565 899999988766655554443333 678899998322211110 114
Q ss_pred cccEEEEcCCC
Q psy17460 120 KVDTVIMNPPF 130 (216)
Q Consensus 120 ~~D~vi~npp~ 130 (216)
.+|.+|.|...
T Consensus 87 ~id~li~~ag~ 97 (278)
T PRK08277 87 PCDILINGAGG 97 (278)
T ss_pred CCCEEEECCCC
Confidence 78999988653
No 351
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=83.90 E-value=8.4 Score=30.43 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=49.3
Q ss_pred CCCCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc--------cc
Q psy17460 48 IDGKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD--------SS 115 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~ 115 (216)
.++++||-.|+ +|.++..+ ++.|. +|++++.+++..+.....+...+..++.++.+|+.+.+.. ..
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 36788998885 55555443 34454 8999999987776655555444433577888887211110 01
Q ss_pred cccCcccEEEEcCCC
Q psy17460 116 VFKQKVDTVIMNPPF 130 (216)
Q Consensus 116 ~~~~~~D~vi~npp~ 130 (216)
..-.++|.||.+...
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 111468999987643
No 352
>PRK07102 short chain dehydrogenase; Provisional
Probab=83.77 E-value=7 Score=30.82 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=45.8
Q ss_pred CEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc---cccCcccE
Q psy17460 51 KTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS---VFKQKVDT 123 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~~~D~ 123 (216)
++++-.|+ +|.++..+ ++.|. +|++++.+++..+.....+...+-.++.++.+|+.+.+-... .....+|.
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 46777774 45555443 34454 899999988766554444433222278899999933221111 11135799
Q ss_pred EEEcCCC
Q psy17460 124 VIMNPPF 130 (216)
Q Consensus 124 vi~npp~ 130 (216)
++.+..+
T Consensus 80 vv~~ag~ 86 (243)
T PRK07102 80 VLIAVGT 86 (243)
T ss_pred EEECCcC
Confidence 9987654
No 353
>PRK09072 short chain dehydrogenase; Provisional
Probab=83.76 E-value=17 Score=28.95 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=48.7
Q ss_pred CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc-----ccCc
Q psy17460 49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-----FKQK 120 (216)
Q Consensus 49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----~~~~ 120 (216)
+++++|-.|++.|. ++..++..|. +|++++.+++..+.....+. .+ .++.++.+|+.+.+-.... ....
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YP-GRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-cC-CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 56788888876544 2233455565 89999999877765554442 22 1688889999332211000 0146
Q ss_pred ccEEEEcCCCC
Q psy17460 121 VDTVIMNPPFG 131 (216)
Q Consensus 121 ~D~vi~npp~~ 131 (216)
+|.++.+..+.
T Consensus 81 id~lv~~ag~~ 91 (263)
T PRK09072 81 INVLINNAGVN 91 (263)
T ss_pred CCEEEECCCCC
Confidence 89999886654
No 354
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=83.59 E-value=0.9 Score=35.42 Aligned_cols=13 Identities=38% Similarity=0.887 Sum_probs=8.8
Q ss_pred ccEEEEcCCCCCC
Q psy17460 121 VDTVIMNPPFGTR 133 (216)
Q Consensus 121 ~D~vi~npp~~~~ 133 (216)
+|+|+.+|||...
T Consensus 1 VdliitDPPY~~~ 13 (231)
T PF01555_consen 1 VDLIITDPPYNIG 13 (231)
T ss_dssp EEEEEE---TSSS
T ss_pred CCEEEECCCCCCC
Confidence 5899999999987
No 355
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.49 E-value=6.5 Score=27.93 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=42.4
Q ss_pred EEEEecCCCCH-hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 52 TVLDLGCGSGI-LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 52 ~vlD~g~GtG~-~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
+|.++|.|.=. .+..++++|. .++++|+++. +.. ..++++..|+ ++.....- +..|+|++-
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~----~g~~~v~DDi--tnP~~~iY-~~A~lIYSi 77 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP----EGLRFVVDDI--TNPNISIY-EGADLIYSI 77 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc----ccceEEEccC--CCccHHHh-hCccceeec
Confidence 89999988665 4566778885 7999999984 222 2688999999 65433211 456777753
No 356
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=83.27 E-value=7.6 Score=30.82 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=49.5
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
+++++|-.|+. |.++.. +++.|. +|+.++.+++..+.+...+...+. ++.++.+|+.+.+..... ..
T Consensus 6 ~~~~vlItGas-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 6 NGKTAVVTGAA-SGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57788877664 444433 444555 899999998777666655544443 578899998332221110 11
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
.+.|.||.+....
T Consensus 83 ~~~d~vi~~ag~~ 95 (262)
T PRK13394 83 GSVDILVSNAGIQ 95 (262)
T ss_pred CCCCEEEECCccC
Confidence 3589999887654
No 357
>PRK06197 short chain dehydrogenase; Provisional
Probab=83.24 E-value=9 Score=31.55 Aligned_cols=81 Identities=10% Similarity=0.027 Sum_probs=48.4
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEecccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSS------V 116 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~------~ 116 (216)
..+++||-.|+. |.++.. +++.|. +|+.++.+++..+.+...+... +-.++.++.+|+.+.+-... .
T Consensus 14 ~~~k~vlItGas-~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 14 QSGRVAVVTGAN-TGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 467888887764 444444 444555 8888888877666555544322 11168889999933321111 0
Q ss_pred ccCcccEEEEcCCC
Q psy17460 117 FKQKVDTVIMNPPF 130 (216)
Q Consensus 117 ~~~~~D~vi~npp~ 130 (216)
.-+.+|++|.|...
T Consensus 92 ~~~~iD~li~nAg~ 105 (306)
T PRK06197 92 AYPRIDLLINNAGV 105 (306)
T ss_pred hCCCCCEEEECCcc
Confidence 11468999988754
No 358
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.14 E-value=6.5 Score=28.45 Aligned_cols=77 Identities=27% Similarity=0.314 Sum_probs=47.2
Q ss_pred CCCCCCEEEEecCCCCHhH--HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460 46 NDIDGKTVLDLGCGSGILT--FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~--~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
...++++++-+|+|--.-+ ..++..|..+++.+..+.+-.+.....+ +-.+++++..+- .. ... ..+|+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~~~--~~--~~~--~~~Di 78 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVNIEAIPLED--LE--EAL--QEADI 78 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEGGG--HC--HHH--HTESE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---CccccceeeHHH--HH--HHH--hhCCe
Confidence 3458899999999844433 3355667788999999876554444433 211344444333 33 111 58999
Q ss_pred EEEcCCCC
Q psy17460 124 VIMNPPFG 131 (216)
Q Consensus 124 vi~npp~~ 131 (216)
||...|-.
T Consensus 79 vI~aT~~~ 86 (135)
T PF01488_consen 79 VINATPSG 86 (135)
T ss_dssp EEE-SSTT
T ss_pred EEEecCCC
Confidence 99887755
No 359
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.71 E-value=8.9 Score=35.41 Aligned_cols=69 Identities=14% Similarity=0.046 Sum_probs=44.8
Q ss_pred CEEEEecCCCCH-hHHH-HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 51 KTVLDLGCGSGI-LTFG-SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 51 ~~vlD~g~GtG~-~~~~-~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
..|+=+|||.=. .... +.+.+ ..++.+|.|++.++.+++. ...++.||+.+.+......-+..|.+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhc-------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 467777777433 2222 33334 3799999999998887652 46799999954444433333578888863
No 360
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.43 E-value=19 Score=28.63 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=47.1
Q ss_pred CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
..+++||-.|++.|.- +..+++.|. +|+.++.+.+ .+.+...+...+- ++.++.+|+.+.+-.... .-
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTN-WDETRRLIEKEGR-KVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcH-HHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3678899999876542 233455565 7888887743 3333333333232 688899999332221110 11
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+.+|.+|.+....
T Consensus 90 g~id~li~~ag~~ 102 (258)
T PRK06935 90 GKIDILVNNAGTI 102 (258)
T ss_pred CCCCEEEECCCCC
Confidence 3689999887654
No 361
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.39 E-value=4.6 Score=34.88 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=33.3
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhh
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKN 93 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~ 93 (216)
.++++||-|.+| |..++..+..++.+|++||+||.+..+.+-.+.
T Consensus 34 ~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 34 GPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 578889998765 555555556667899999999988877665543
No 362
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.27 E-value=5.7 Score=33.76 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=45.1
Q ss_pred CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCCh---------------------HHHHHHHHhhhHhCCC-ceEEEE
Q psy17460 49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECDK---------------------EILDIFIDNKNEFEIT-NCDAIL 104 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~~---------------------~~~~~~~~~~~~~~~~-~v~~~~ 104 (216)
...+|+-+||| .|+. +..++..|-.+++.+|-+. .-.+.+.+.++...-. +++.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 56789999998 4553 3556677778999999873 1223344444432211 466666
Q ss_pred ecccccccccccccCcccEEEEc
Q psy17460 105 FEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 105 ~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.++ ..-.....-..+|+|+..
T Consensus 103 ~~~--~~~~~~~~~~~~DlVid~ 123 (339)
T PRK07688 103 QDV--TAEELEELVTGVDLIIDA 123 (339)
T ss_pred ccC--CHHHHHHHHcCCCEEEEc
Confidence 666 321111111578999864
No 363
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=82.10 E-value=6.9 Score=31.26 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=46.6
Q ss_pred EEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCccc
Q psy17460 52 TVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQKVD 122 (216)
Q Consensus 52 ~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~~D 122 (216)
++|-.|++.|. ++..+++.|. +|+.++.+++.++.+...+...+ ++.++.+|+.+.+-... ..-+.+|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 57777766544 2233445565 89999999887776666554433 57788999832221100 0114789
Q ss_pred EEEEcCCC
Q psy17460 123 TVIMNPPF 130 (216)
Q Consensus 123 ~vi~npp~ 130 (216)
++|.|.-.
T Consensus 79 ~li~naG~ 86 (259)
T PRK08340 79 ALVWNAGN 86 (259)
T ss_pred EEEECCCC
Confidence 99988654
No 364
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.81 E-value=8.6 Score=30.48 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=49.4
Q ss_pred CCCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
..+++|+-.| |+|.++..++ ..|. +|++++.+++.++.....+...+. ++.++.+|+.+.+-.... .
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHh
Confidence 3678888888 4455554433 3454 899999998877666555543332 678899998322211000 1
Q ss_pred cCcccEEEEcCCC
Q psy17460 118 KQKVDTVIMNPPF 130 (216)
Q Consensus 118 ~~~~D~vi~npp~ 130 (216)
.+.+|.++.+...
T Consensus 84 ~~~~d~li~~ag~ 96 (258)
T PRK06949 84 AGTIDILVNNSGV 96 (258)
T ss_pred cCCCCEEEECCCC
Confidence 1368999988764
No 365
>PRK07831 short chain dehydrogenase; Provisional
Probab=81.79 E-value=11 Score=29.99 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=49.8
Q ss_pred CCCEEEEecCC-CC--Hh-HHHHhHcCCCEEEEEeCChHHHHHHHHhhhH-hCCCceEEEEecccccccccc------cc
Q psy17460 49 DGKTVLDLGCG-SG--IL-TFGSILLGADFCFALECDKEILDIFIDNKNE-FEITNCDAILFEINEKSLDSS------VF 117 (216)
Q Consensus 49 ~~~~vlD~g~G-tG--~~-~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~------~~ 117 (216)
+++++|-.|++ .| .. +..++..|. +|+.+|.+++.++.....+.. .+-.++.++.+|+.+.+-... ..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56788888863 33 32 233555565 799999988777666655543 232267888999832221110 01
Q ss_pred cCcccEEEEcCCCC
Q psy17460 118 KQKVDTVIMNPPFG 131 (216)
Q Consensus 118 ~~~~D~vi~npp~~ 131 (216)
.+..|++|.|.-+.
T Consensus 95 ~g~id~li~~ag~~ 108 (262)
T PRK07831 95 LGRLDVLVNNAGLG 108 (262)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999887653
No 366
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=81.68 E-value=4.8 Score=32.01 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=45.1
Q ss_pred CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCC-------------------hHHHHHHHHhhhHhCCC-ceEEEEec
Q psy17460 49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECD-------------------KEILDIFIDNKNEFEIT-NCDAILFE 106 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~-------------------~~~~~~~~~~~~~~~~~-~v~~~~~d 106 (216)
...+|+-+||| .|+. +..++..|..+++.+|-+ ..-.+.+.+.++...-. +++.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 56789999998 5664 355777787888888644 33344555555443321 45556555
Q ss_pred ccccccccccccCcccEEEEcC
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~np 128 (216)
+...+... .-..+|+||+..
T Consensus 100 i~~~~~~~--~~~~~DvVi~~~ 119 (228)
T cd00757 100 LDAENAEE--LIAGYDLVLDCT 119 (228)
T ss_pred eCHHHHHH--HHhCCCEEEEcC
Confidence 51111111 114699999754
No 367
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.62 E-value=8.6 Score=30.89 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=47.1
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc--cc---c---
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD--SS---V--- 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~---~--- 116 (216)
+++++|-.|+ +|.++.. ++..|. +|++++.+++..+.....+...+. ++.++.+|+ .+.. .. .
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv--~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADV--RDYAAVEAAFAQIAD 82 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCC--CCHHHHHHHHHHHHH
Confidence 6788888885 4444443 344454 899999988776655444443332 567888898 4321 00 0
Q ss_pred ccCcccEEEEcCC
Q psy17460 117 FKQKVDTVIMNPP 129 (216)
Q Consensus 117 ~~~~~D~vi~npp 129 (216)
.-..+|.+|.|..
T Consensus 83 ~~~~iD~vi~~ag 95 (264)
T PRK07576 83 EFGPIDVLVSGAA 95 (264)
T ss_pred HcCCCCEEEECCC
Confidence 1136899998864
No 368
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=81.48 E-value=8.9 Score=30.54 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=45.8
Q ss_pred CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.+++++|-.|++.|.- +..+++.|. +|+.++.+.. +.....+...+. ++.++.+|+.+.+-.... .-
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGR-KFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCC-eEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 3678999999766652 233455565 7888776532 222223333332 688889999333211110 11
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+.+|+++.|.-..
T Consensus 82 g~iD~lv~~ag~~ 94 (251)
T PRK12481 82 GHIDILINNAGII 94 (251)
T ss_pred CCCCEEEECCCcC
Confidence 4689999887543
No 369
>PRK05650 short chain dehydrogenase; Provisional
Probab=81.40 E-value=9.4 Score=30.69 Aligned_cols=75 Identities=11% Similarity=-0.042 Sum_probs=46.2
Q ss_pred EEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--cc------ccC
Q psy17460 52 TVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--SV------FKQ 119 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~------~~~ 119 (216)
+||-.|+ +|.++.. +++.|. +|+.++.+++..+.+...+...+. ++.++.+|+ .+... .. ..+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~--~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGG-DGFYQRCDV--RDYSQLTALAQACEEKWG 76 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccC--CCHHHHHHHHHHHHHHcC
Confidence 5676675 4444433 444454 899999988776666555544433 678889998 44221 10 114
Q ss_pred cccEEEEcCCCC
Q psy17460 120 KVDTVIMNPPFG 131 (216)
Q Consensus 120 ~~D~vi~npp~~ 131 (216)
.+|.+|.|....
T Consensus 77 ~id~lI~~ag~~ 88 (270)
T PRK05650 77 GIDVIVNNAGVA 88 (270)
T ss_pred CCCEEEECCCCC
Confidence 689999886544
No 370
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.33 E-value=9.8 Score=31.48 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=48.1
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCCh-HHHHHHHHhhhHhCCCceEEEEeccccccccccc-----cc
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDK-EILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-----FK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~-~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----~~ 118 (216)
.+++++|-.|++.|. ++..+++.|. +|+..|.+. ...+.....+...+. ++.++.+|+.+.+-.... .-
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGA-KAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 468899988887665 2344556666 788888743 333333333333332 678899998332111100 01
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+.+|++|.|.-..
T Consensus 88 g~iD~li~nAG~~ 100 (306)
T PRK07792 88 GGLDIVVNNAGIT 100 (306)
T ss_pred CCCCEEEECCCCC
Confidence 4689999886543
No 371
>KOG1205|consensus
Probab=81.27 E-value=8.5 Score=31.83 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=56.3
Q ss_pred CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEecccccccccc------ccc
Q psy17460 49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDSS------VFK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~------~~~ 118 (216)
.+++|+=.||.+|. ++.++++.|. +++-+-...+.++...+.+...+-. ++..+.+|+.+.+-... ..-
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 68999999999987 4566777776 6666666666666664444444333 49999999944432211 122
Q ss_pred CcccEEEEcCCCCCC
Q psy17460 119 QKVDTVIMNPPFGTR 133 (216)
Q Consensus 119 ~~~D~vi~npp~~~~ 133 (216)
+..|+.+.|.-+...
T Consensus 90 g~vDvLVNNAG~~~~ 104 (282)
T KOG1205|consen 90 GRVDVLVNNAGISLV 104 (282)
T ss_pred CCCCEEEecCccccc
Confidence 678999999776654
No 372
>PLN02253 xanthoxin dehydrogenase
Probab=81.23 E-value=9.5 Score=30.81 Aligned_cols=78 Identities=15% Similarity=0.055 Sum_probs=46.4
Q ss_pred CCCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.++++|-.|++ |.++..+ ++.|. +|+.++.+++..+.....+.. + .++.++.+|+.+.+-.... .-
T Consensus 17 ~~k~~lItGas-~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 17 LGKVALVTGGA-TGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG-E-PNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC-C-CceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 57788888854 4445443 34454 899999887665544433321 1 2688999999332211110 01
Q ss_pred CcccEEEEcCCC
Q psy17460 119 QKVDTVIMNPPF 130 (216)
Q Consensus 119 ~~~D~vi~npp~ 130 (216)
+..|.+|.|...
T Consensus 93 g~id~li~~Ag~ 104 (280)
T PLN02253 93 GTLDIMVNNAGL 104 (280)
T ss_pred CCCCEEEECCCc
Confidence 368999987644
No 373
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=81.15 E-value=27 Score=28.56 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=61.1
Q ss_pred CCCCCEEEEecCCCCHhH--HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 47 DIDGKTVLDLGCGSGILT--FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 47 ~~~~~~vlD~g~GtG~~~--~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
...+++|+-+|+|--..+ ..++..|..+|+.++.+++..+.....+.... .+.+ ..+. .+.. ..+|+|
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~-~~~~--~~~~-----~~~Div 189 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAEL-DLEL--QEEL-----ADFDLI 189 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceee-cccc--hhcc-----ccCCEE
Confidence 346789999998632222 22444565689999999876655544443211 1232 1121 1111 578999
Q ss_pred EEcCCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHh
Q psy17460 125 IMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAF 171 (216)
Q Consensus 125 i~npp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~ 171 (216)
|..-|-+..............+.....+|.+.+......+++.+++.
T Consensus 190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~ 236 (278)
T PRK00258 190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQ 236 (278)
T ss_pred EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHC
Confidence 98766654311000001112233333377776665566777777665
No 374
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.14 E-value=9.3 Score=29.05 Aligned_cols=31 Identities=19% Similarity=0.013 Sum_probs=22.5
Q ss_pred EEEEecCC-CCHh-HHHHhHcCCCEEEEEeCCh
Q psy17460 52 TVLDLGCG-SGIL-TFGSILLGADFCFALECDK 82 (216)
Q Consensus 52 ~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~~ 82 (216)
+|+-+||| .|+. +..++..|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 37788988 4664 4456677778899999774
No 375
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.97 E-value=13 Score=29.05 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=49.0
Q ss_pred CCCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--cc------
Q psy17460 49 DGKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--SV------ 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~------ 116 (216)
.+++++-.|+ +|.++..+ +..|. +|+.++.++...+.....+...+. ++.++.+|+ .+... ..
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~--~~~~~~~~~~~~~~~ 80 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGV-KVVIATADV--SDYEEVTAAIEQLKN 80 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCC--CCHHHHHHHHHHHHH
Confidence 4677888885 56666544 34465 899999988766554444443332 688889998 44321 00
Q ss_pred ccCcccEEEEcCCCC
Q psy17460 117 FKQKVDTVIMNPPFG 131 (216)
Q Consensus 117 ~~~~~D~vi~npp~~ 131 (216)
..+..|.||.+....
T Consensus 81 ~~~~id~vi~~ag~~ 95 (239)
T PRK07666 81 ELGSIDILINNAGIS 95 (239)
T ss_pred HcCCccEEEEcCccc
Confidence 113689999887543
No 376
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.91 E-value=7.5 Score=33.99 Aligned_cols=73 Identities=16% Similarity=0.047 Sum_probs=46.7
Q ss_pred CCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTV 124 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~v 124 (216)
....|+=+|+| .++..++ ..+ ..++.+|.+++.++.++.... ++.++.||+.+.+.......+.+|.|
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~-~~v~vid~~~~~~~~~~~~~~-----~~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEG-YSVKLIERDPERAEELAEELP-----NTLVLHGDGTDQELLEEEGIDEADAF 301 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHCC-----CCeEEECCCCCHHHHHhcCCccCCEE
Confidence 45678888875 4443333 233 489999999998877665431 56789999943333222222678998
Q ss_pred EEcCC
Q psy17460 125 IMNPP 129 (216)
Q Consensus 125 i~npp 129 (216)
++..+
T Consensus 302 i~~~~ 306 (453)
T PRK09496 302 IALTN 306 (453)
T ss_pred EECCC
Confidence 87554
No 377
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=80.85 E-value=8.9 Score=34.83 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=41.9
Q ss_pred EEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 52 TVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 52 ~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
.++=+||| ..+..+++ .+ ..++.+|.|++.++.+++. ....+.||+.+.+......-+..|.+++.
T Consensus 419 hiiI~G~G--~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~~-------g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 419 HALLVGYG--RVGSLLGEKLLAAG-IPLVVIETSRTRVDELRER-------GIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CEEEECCC--hHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC-------CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 45555655 44433333 34 4799999999988877642 57899999944333322223678877763
No 378
>PRK06138 short chain dehydrogenase; Provisional
Probab=80.85 E-value=23 Score=27.83 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=47.9
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
+++++|-.||. |.++.. +++.|. +|++++.+.+........+. .+. ++.++.+|+.+.+-.... .-
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~~-~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIA-AGG-RAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHh-cCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57788888875 444333 444554 89999988776655554443 222 688999999322211110 01
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
..+|.|+.+....
T Consensus 80 ~~id~vi~~ag~~ 92 (252)
T PRK06138 80 GRLDVLVNNAGFG 92 (252)
T ss_pred CCCCEEEECCCCC
Confidence 4789999877654
No 379
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.71 E-value=13 Score=29.36 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=50.1
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~ 118 (216)
++++++-.|++.|. +.. +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-... ..-
T Consensus 6 ~~k~ilItGas~~i-G~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGGAAGI-GRATALAFAREGA-KVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 57889999875443 333 444554 899999998777666655544443 68899999933221111 011
Q ss_pred CcccEEEEcCCC
Q psy17460 119 QKVDTVIMNPPF 130 (216)
Q Consensus 119 ~~~D~vi~npp~ 130 (216)
+++|.++.|.-+
T Consensus 83 g~id~li~~ag~ 94 (253)
T PRK06172 83 GRLDYAFNNAGI 94 (253)
T ss_pred CCCCEEEECCCC
Confidence 467999988755
No 380
>KOG2782|consensus
Probab=80.38 E-value=1.3 Score=35.24 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=63.0
Q ss_pred HHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-
Q psy17460 38 LHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS- 115 (216)
Q Consensus 38 ~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~- 115 (216)
+..+...+.+.+|...+|..-|.|.-+..+.+.-+ .++++.|.+|-+.++|+......-.+.+..+.+++ ...+.-
T Consensus 32 ~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~F--s~~~~l~ 109 (303)
T KOG2782|consen 32 LDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNF--SYIKSLI 109 (303)
T ss_pred hhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhh--HHHHHHH
Confidence 33344333445899999999999999988887755 78999999999999888877532222444555665 332211
Q ss_pred ----cccCcccEEEEcCCCCCC
Q psy17460 116 ----VFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 116 ----~~~~~~D~vi~npp~~~~ 133 (216)
..+..+|-|+++.-...+
T Consensus 110 ~~~gl~~~~vDGiLmDlGcSSM 131 (303)
T KOG2782|consen 110 ADTGLLDVGVDGILMDLGCSSM 131 (303)
T ss_pred HHhCCCcCCcceEEeecCcccc
Confidence 122678999886554443
No 381
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.29 E-value=14 Score=29.25 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=50.7
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
.++++++-.|++.| ++.. +++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-.... .
T Consensus 9 ~~~k~ilItGas~~-IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARG-LGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHh
Confidence 46888998886544 4433 444565 899999998776665555544443 588899998332211110 1
Q ss_pred cCcccEEEEcCCCC
Q psy17460 118 KQKVDTVIMNPPFG 131 (216)
Q Consensus 118 ~~~~D~vi~npp~~ 131 (216)
-+++|.+|.|.-..
T Consensus 86 ~~~id~vi~~ag~~ 99 (256)
T PRK06124 86 HGRLDILVNNVGAR 99 (256)
T ss_pred cCCCCEEEECCCCC
Confidence 14679999886543
No 382
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=80.21 E-value=7.7 Score=30.86 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=44.2
Q ss_pred EEEEecCCCCH--hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 52 TVLDLGCGSGI--LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 52 ~vlD~g~GtG~--~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
+++=+|||.=. ++..+...|. .|+.+|.+++.++.....-. .+..+.+|..+.+...+..-..+|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~-----~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADEL-----DTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhc-----ceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 56677877433 2333555554 89999999988776333211 5789999994444443333367899886
No 383
>PRK07791 short chain dehydrogenase; Provisional
Probab=80.12 E-value=16 Score=29.81 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=48.2
Q ss_pred CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCCh---------HHHHHHHHhhhHhCCCceEEEEecccccccccc
Q psy17460 48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDK---------EILDIFIDNKNEFEITNCDAILFEINEKSLDSS 115 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~---------~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 115 (216)
.+++++|-.|++.|.- +..+++.|. +|+.++.+. +..+.+...+...+. ++.++.+|+.+.+-...
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIADWDGAAN 81 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCCHHHHHH
Confidence 3678899999877652 233555665 788887764 444444444433333 57788889833221100
Q ss_pred ------cccCcccEEEEcCCCC
Q psy17460 116 ------VFKQKVDTVIMNPPFG 131 (216)
Q Consensus 116 ------~~~~~~D~vi~npp~~ 131 (216)
..-+.+|.+|.|.-..
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCCC
Confidence 0115789999987653
No 384
>PRK05872 short chain dehydrogenase; Provisional
Probab=80.08 E-value=11 Score=30.97 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=47.9
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~ 118 (216)
..++++|-.|++.|. ++..+++.|. +|+.++.+++.++.....+.. +. .+..+.+|+.+.+-... ..-
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DD-RVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467889988866544 2233445565 899999998776655444332 21 45666788832221100 011
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+.+|++|.|.-..
T Consensus 84 g~id~vI~nAG~~ 96 (296)
T PRK05872 84 GGIDVVVANAGIA 96 (296)
T ss_pred CCCCEEEECCCcC
Confidence 4689999987653
No 385
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=79.94 E-value=12 Score=34.31 Aligned_cols=80 Identities=10% Similarity=0.052 Sum_probs=47.5
Q ss_pred CCCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHh-----CC---CceEEEEecccccccccc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEF-----EI---TNCDAILFEINEKSLDSS 115 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~-----~~---~~v~~~~~d~~~~~~~~~ 115 (216)
..|++||-.|+ +|.++..++ +.|. +|++++.+.+........+... +. .++.++.+|+.+.+....
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 46777777775 466665443 3454 8999998887665444333221 11 158899999943222111
Q ss_pred cccCcccEEEEcCCC
Q psy17460 116 VFKQKVDTVIMNPPF 130 (216)
Q Consensus 116 ~~~~~~D~vi~npp~ 130 (216)
.-+..|+||++.-.
T Consensus 156 -aLggiDiVVn~AG~ 169 (576)
T PLN03209 156 -ALGNASVVICCIGA 169 (576)
T ss_pred -HhcCCCEEEEcccc
Confidence 11568999988643
No 386
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=79.85 E-value=9.2 Score=31.78 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=47.1
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
+++++|-.|+.. .++.. ++..|. +|+.++.++...+.+...+...+ .++.++.+|+.+.+-.... ..
T Consensus 5 ~~k~vlVTGas~-gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 5 AKGTVIITGASS-GVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPP-DSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCEEEEEcCCC-hHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccC-CceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 567888888654 44443 444554 89999988776655544443212 1688889998332211110 11
Q ss_pred CcccEEEEcCCC
Q psy17460 119 QKVDTVIMNPPF 130 (216)
Q Consensus 119 ~~~D~vi~npp~ 130 (216)
...|++|.|...
T Consensus 82 ~~iD~li~nAg~ 93 (322)
T PRK07453 82 KPLDALVCNAAV 93 (322)
T ss_pred CCccEEEECCcc
Confidence 358999988754
No 387
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.53 E-value=17 Score=28.64 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=49.9
Q ss_pred CCCEEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.+++||-.|+ +|.++..+++ .|. +|++++.++...+.....+...+. ++.++.+|+.+.+-.... ..
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4567776665 5666655554 344 899999998877666555544343 688899998332211110 11
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+.+|+||.+....
T Consensus 80 ~~~d~vi~~a~~~ 92 (258)
T PRK12429 80 GGVDILVNNAGIQ 92 (258)
T ss_pred CCCCEEEECCCCC
Confidence 3689999887544
No 388
>PRK08226 short chain dehydrogenase; Provisional
Probab=79.21 E-value=26 Score=27.85 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=46.6
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
..++++|-.|+. |.++.. ++..|. +|+.++.+++..+.+.... ..+. ++.++.+|+.+.+-.... .
T Consensus 4 ~~~~~~lItG~s-~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~-~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 4 LTGKTALITGAL-QGIGEGIARVFARHGA-NLILLDISPEIEKLADELC-GRGH-RCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CCCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHH-HhCC-ceEEEECCCCCHHHHHHHHHHHHHH
Confidence 357788888875 444433 444555 7999998876444433322 2232 678889999322211110 1
Q ss_pred cCcccEEEEcCCCC
Q psy17460 118 KQKVDTVIMNPPFG 131 (216)
Q Consensus 118 ~~~~D~vi~npp~~ 131 (216)
-...|.+|.|.-+.
T Consensus 80 ~~~id~vi~~ag~~ 93 (263)
T PRK08226 80 EGRIDILVNNAGVC 93 (263)
T ss_pred cCCCCEEEECCCcC
Confidence 14689999887654
No 389
>PRK06196 oxidoreductase; Provisional
Probab=79.18 E-value=12 Score=31.05 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=46.6
Q ss_pred CCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--c------c
Q psy17460 49 DGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--S------V 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~------~ 116 (216)
.+++||-.|++ |.++..++ ..|. +|++++.+++..+.+...+. ++.++.+|+ .+... . .
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl--~d~~~v~~~~~~~~~ 95 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID-----GVEVVMLDL--ADLESVRAFAERFLD 95 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh-----hCeEEEccC--CCHHHHHHHHHHHHh
Confidence 57888888865 44554443 4454 89999998876654443332 467889999 44321 0 0
Q ss_pred ccCcccEEEEcCCCC
Q psy17460 117 FKQKVDTVIMNPPFG 131 (216)
Q Consensus 117 ~~~~~D~vi~npp~~ 131 (216)
.....|++|.|....
T Consensus 96 ~~~~iD~li~nAg~~ 110 (315)
T PRK06196 96 SGRRIDILINNAGVM 110 (315)
T ss_pred cCCCCCEEEECCCCC
Confidence 114689999987643
No 390
>PRK07035 short chain dehydrogenase; Provisional
Probab=78.98 E-value=17 Score=28.76 Aligned_cols=81 Identities=17% Similarity=0.115 Sum_probs=50.2
Q ss_pred CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.++++||-.|++.|.- +..+++.|. +|+.++.++...+.....+...+. ++.++..|..+.+-.... .-
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGG-KAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567888888776652 233555565 899999988776665555544332 577788888322211100 11
Q ss_pred CcccEEEEcCCC
Q psy17460 119 QKVDTVIMNPPF 130 (216)
Q Consensus 119 ~~~D~vi~npp~ 130 (216)
+++|+++.+..+
T Consensus 84 ~~id~li~~ag~ 95 (252)
T PRK07035 84 GRLDILVNNAAA 95 (252)
T ss_pred CCCCEEEECCCc
Confidence 368999988764
No 391
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=78.73 E-value=4.5 Score=31.57 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=40.2
Q ss_pred CCCEEEEecCCCCHhHHHHhH----cC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecc
Q psy17460 49 DGKTVLDLGCGSGILTFGSIL----LG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~----~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 107 (216)
++..|+++|.-.|..++.+|. .| +-+|+++|+|-...+.+... .+.+.++.++.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss 127 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSS 127 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCC
Confidence 677999999999998776554 24 26899999986554433322 34799999999
No 392
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=78.65 E-value=5.6 Score=34.12 Aligned_cols=46 Identities=30% Similarity=0.433 Sum_probs=35.6
Q ss_pred CCCCCCEEEEecCCC-CHhHHHHhHc-CCCEEEEEeCChHHHHHHHHh
Q psy17460 46 NDIDGKTVLDLGCGS-GILTFGSILL-GADFCFALECDKEILDIFIDN 91 (216)
Q Consensus 46 ~~~~~~~vlD~g~Gt-G~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~~ 91 (216)
...++.+||..|||. |..+..+++. |...+++++.+++..+.++..
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 345688999999876 6677777765 444699999999988888775
No 393
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=78.36 E-value=4.5 Score=33.02 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=22.6
Q ss_pred ceEEEEecccccccccccccCcccEEEEcCCCCC
Q psy17460 99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGT 132 (216)
Q Consensus 99 ~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~ 132 (216)
++++.++|+ .++.... ..=|+|++||||..
T Consensus 155 ~v~i~~~Df--~~~i~~~--~~~dfvYlDPPY~~ 184 (266)
T TIGR00571 155 NTTFLCGSF--EKILAMV--DDDSFVYCDPPYLP 184 (266)
T ss_pred CCEEEECCH--HHHHhhc--CCCCEEEECCCCCC
Confidence 689999999 6654322 45579999999963
No 394
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=78.23 E-value=5.1 Score=33.31 Aligned_cols=77 Identities=10% Similarity=0.012 Sum_probs=43.3
Q ss_pred cCCCCHhHHHHhHc----CCCEEEEEeCChHHHHHHHHhhhHhC-CCce----EEEEecccccccccc-cccCcccEEEE
Q psy17460 57 GCGSGILTFGSILL----GADFCFALECDKEILDIFIDNKNEFE-ITNC----DAILFEINEKSLDSS-VFKQKVDTVIM 126 (216)
Q Consensus 57 g~GtG~~~~~~~~~----~~~~v~~iD~~~~~~~~~~~~~~~~~-~~~v----~~~~~d~~~~~~~~~-~~~~~~D~vi~ 126 (216)
-.|+|+++.+++++ ++.+++.+|.|+..+...+..+.... -+++ ..+.+|+.+.+.... .....+|+||-
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 34789998887764 56799999999999988888874322 1133 456999944433222 11248999997
Q ss_pred cCCCCCC
Q psy17460 127 NPPFGTR 133 (216)
Q Consensus 127 npp~~~~ 133 (216)
-..|-+-
T Consensus 84 aAA~KhV 90 (293)
T PF02719_consen 84 AAALKHV 90 (293)
T ss_dssp ------H
T ss_pred ChhcCCC
Confidence 6666653
No 395
>PRK08278 short chain dehydrogenase; Provisional
Probab=78.22 E-value=25 Score=28.41 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=46.3
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHH-------HHHHHHhhhHhCCCceEEEEeccccccccccc-
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEI-------LDIFIDNKNEFEITNCDAILFEINEKSLDSSV- 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~-------~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~- 116 (216)
.++++|-.|++.|. +.. +++.|. +|+.++.+.+. ++.....+...+. ++.++.+|+.+.+-....
T Consensus 5 ~~k~vlItGas~gI-G~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 5 SGKTLFITGASRGI-GLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHH
Confidence 56788888876544 433 444555 88888876532 2222223333333 678889998333311110
Q ss_pred -----ccCcccEEEEcCCCCC
Q psy17460 117 -----FKQKVDTVIMNPPFGT 132 (216)
Q Consensus 117 -----~~~~~D~vi~npp~~~ 132 (216)
.-+.+|++|.|..+..
T Consensus 82 ~~~~~~~g~id~li~~ag~~~ 102 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAIN 102 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcC
Confidence 1136899999876543
No 396
>KOG1098|consensus
Probab=78.20 E-value=4 Score=37.29 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=44.5
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCC--CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc----cccCcc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGA--DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS----VFKQKV 121 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~--~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~----~~~~~~ 121 (216)
.++..|||+||..|...-.+++.-+ +-|+|||+-| ...+++|.-+..|+.-..+-.. ...-+.
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p-----------ikp~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP-----------IKPIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee-----------cccCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 4678999999999999987777533 6899999976 2223355555666521111111 011346
Q ss_pred cEEEEcCC
Q psy17460 122 DTVIMNPP 129 (216)
Q Consensus 122 D~vi~npp 129 (216)
|+|+.+..
T Consensus 112 dvVLhDga 119 (780)
T KOG1098|consen 112 DVVLHDGA 119 (780)
T ss_pred cEEeecCC
Confidence 88886643
No 397
>PRK08862 short chain dehydrogenase; Provisional
Probab=77.85 E-value=16 Score=28.71 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=51.3
Q ss_pred CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------ccC
Q psy17460 49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FKQ 119 (216)
Q Consensus 49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~ 119 (216)
.++.++-.|++.|. ++..+++.|. +|+.++.+++.++.+...+...+. ++..+..|..+.+-.... .-+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 57899999998877 3344666666 799999998887776665554443 466677777322211110 113
Q ss_pred -cccEEEEcC
Q psy17460 120 -KVDTVIMNP 128 (216)
Q Consensus 120 -~~D~vi~np 128 (216)
.+|++|.|.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 799999986
No 398
>PRK06701 short chain dehydrogenase; Provisional
Probab=77.71 E-value=12 Score=30.68 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=45.4
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChH-HHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKE-ILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
.+++++|-.|++.|. ++..+++.|. +|+.++.++. ..+.....+...+. ++.++.+|+.+.+..... .
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357789888865544 2233445565 7888887642 23333333333333 678899998332211110 0
Q ss_pred cCcccEEEEcCCC
Q psy17460 118 KQKVDTVIMNPPF 130 (216)
Q Consensus 118 ~~~~D~vi~npp~ 130 (216)
-..+|.+|.|...
T Consensus 122 ~~~iD~lI~~Ag~ 134 (290)
T PRK06701 122 LGRLDILVNNAAF 134 (290)
T ss_pred cCCCCEEEECCcc
Confidence 1368999987654
No 399
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.67 E-value=33 Score=27.17 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=46.4
Q ss_pred CEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc---c---c-cC
Q psy17460 51 KTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS---V---F-KQ 119 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~---~-~~ 119 (216)
+++|-.|++. .++.. +++.|. +|+.++.+++.++....... +. ++.++.+|+.+.+-... . . .+
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~-~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--AG-NAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--CC-ceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3577777654 44433 444564 89999998877666544433 22 68899999943221111 0 0 25
Q ss_pred cccEEEEcCCCC
Q psy17460 120 KVDTVIMNPPFG 131 (216)
Q Consensus 120 ~~D~vi~npp~~ 131 (216)
++|.|+.|....
T Consensus 77 ~id~vi~~ag~~ 88 (260)
T PRK08267 77 RLDVLFNNAGIL 88 (260)
T ss_pred CCCEEEECCCCC
Confidence 789999887654
No 400
>PRK07677 short chain dehydrogenase; Provisional
Probab=77.37 E-value=18 Score=28.57 Aligned_cols=78 Identities=18% Similarity=0.106 Sum_probs=47.0
Q ss_pred CCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCc
Q psy17460 50 GKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQK 120 (216)
Q Consensus 50 ~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~ 120 (216)
++++|-.|++.|. ++..+++.|. +|++++.++...+.+...+...+. ++.++.+|+.+.+-... ..-+.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPG-QVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 3578878876553 2233445565 899999988766665555443332 68889999832221111 01146
Q ss_pred ccEEEEcCC
Q psy17460 121 VDTVIMNPP 129 (216)
Q Consensus 121 ~D~vi~npp 129 (216)
.|.+|.|..
T Consensus 79 id~lI~~ag 87 (252)
T PRK07677 79 IDALINNAA 87 (252)
T ss_pred ccEEEECCC
Confidence 899998763
No 401
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=77.25 E-value=4.7 Score=33.19 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=24.1
Q ss_pred ceEEEEecccccccccccccCcc-cEEEEcCCCCCC
Q psy17460 99 NCDAILFEINEKSLDSSVFKQKV-DTVIMNPPFGTR 133 (216)
Q Consensus 99 ~v~~~~~d~~~~~~~~~~~~~~~-D~vi~npp~~~~ 133 (216)
++++.++|+ .++.... .+- |+|+|||||...
T Consensus 156 ~~~i~~~df--~~v~~~a--~~~~dfvY~DPPY~~~ 187 (274)
T COG0338 156 NATIENGDF--EEVLADA--DSGDDFVYCDPPYLPL 187 (274)
T ss_pred cCeEEcCCH--HHHHhhc--cCCCcEEEeCCCCCcc
Confidence 689999999 6655422 455 899999999875
No 402
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=77.23 E-value=5.1 Score=36.97 Aligned_cols=60 Identities=22% Similarity=0.147 Sum_probs=42.9
Q ss_pred ccCccccCCHHHHHHHHHHHHhhcCC----------CCCCEEEEecCCC-CHh-HHHHhHcCCCEEEEEeCC
Q psy17460 22 VHLEQYHTPPHLAATILHTIQNNYND----------IDGKTVLDLGCGS-GIL-TFGSILLGADFCFALECD 81 (216)
Q Consensus 22 ~~~~~~~t~~~~~~~~~~~~~~~~~~----------~~~~~vlD~g~Gt-G~~-~~~~~~~~~~~v~~iD~~ 81 (216)
..++.+..|..+++..+.+-+.+.++ ....+||-+|||+ |+. +..++..|-.+++.+|.+
T Consensus 300 ~dL~~~mdP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 300 VDLSKEFDPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred echhhhcCHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 44666777888888776655544432 3467999999996 775 455777888899999954
No 403
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=77.18 E-value=34 Score=29.76 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCC-CCCCEEEEecCCCCHh-H--HHHh-HcCCCEEEEEeCChHHHH------------HHHHhhhHhCC
Q psy17460 35 ATILHTIQNNYND-IDGKTVLDLGCGSGIL-T--FGSI-LLGADFCFALECDKEILD------------IFIDNKNEFEI 97 (216)
Q Consensus 35 ~~~~~~~~~~~~~-~~~~~vlD~g~GtG~~-~--~~~~-~~~~~~v~~iD~~~~~~~------------~~~~~~~~~~~ 97 (216)
...+..+...-+. ..++++|-+|+.+|.- + +..+ ..|+ .+++++...+..+ .+...+...+.
T Consensus 25 ~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al~~GA-~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~ 103 (398)
T PRK13656 25 KEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAFGAGA-DTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGL 103 (398)
T ss_pred HHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHHHcCC-eEEEEecCcchhhhcccccccchHHHHHHHHHhcCC
Confidence 3344555544222 3468999999988773 3 2212 4454 6788875332211 12333333343
Q ss_pred CceEEEEecccccccccc--------cccCcccEEEEcCCCCCC
Q psy17460 98 TNCDAILFEINEKSLDSS--------VFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 98 ~~v~~~~~d~~~~~~~~~--------~~~~~~D~vi~npp~~~~ 133 (216)
.+..+.+|+ .+.... ..-+.+|+++.|..|..+
T Consensus 104 -~a~~i~~DV--ss~E~v~~lie~I~e~~G~IDiLVnSaA~~~r 144 (398)
T PRK13656 104 -YAKSINGDA--FSDEIKQKVIELIKQDLGQVDLVVYSLASPRR 144 (398)
T ss_pred -ceEEEEcCC--CCHHHHHHHHHHHHHhcCCCCEEEECCccCCC
Confidence 466788999 442110 011579999999988866
No 404
>PLN02427 UDP-apiose/xylose synthase
Probab=77.09 E-value=6.6 Score=33.60 Aligned_cols=78 Identities=13% Similarity=0.041 Sum_probs=42.9
Q ss_pred CCCCEEEEecCCCCHhHHHHhHc----CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-ccccCccc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILL----GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-SVFKQKVD 122 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~----~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~~D 122 (216)
.+.++||-.| |+|.++..+++. +..+|+++|.+.................+++++.+|+ .+... ...-..+|
T Consensus 12 ~~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl--~d~~~l~~~~~~~d 88 (386)
T PLN02427 12 IKPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINI--KHDSRLEGLIKMAD 88 (386)
T ss_pred ccCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCC--CChHHHHHHhhcCC
Confidence 4566788665 778877665542 2248999997764433221110000012689999999 54321 11113589
Q ss_pred EEEEcC
Q psy17460 123 TVIMNP 128 (216)
Q Consensus 123 ~vi~np 128 (216)
.||-..
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 887433
No 405
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=76.86 E-value=23 Score=29.07 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=60.1
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEeccccccccccc----c--
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSSV----F-- 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~----~-- 117 (216)
..++.+|-.|+-+|. ++..++++|. +++.+--+.+.+....+.+... ++ .++++..|..+.+-.... .
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v-~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGV-EVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCc-eEEEEECcCCChhHHHHHHHHHHhc
Confidence 457789999988776 3455666766 8999999999888877777653 34 689999998333321111 1
Q ss_pred cCcccEEEEcCCCCCC
Q psy17460 118 KQKVDTVIMNPPFGTR 133 (216)
Q Consensus 118 ~~~~D~vi~npp~~~~ 133 (216)
...+|+.|-|.=|+..
T Consensus 82 ~~~IdvLVNNAG~g~~ 97 (265)
T COG0300 82 GGPIDVLVNNAGFGTF 97 (265)
T ss_pred CCcccEEEECCCcCCc
Confidence 1379999999888876
No 406
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=76.73 E-value=26 Score=25.43 Aligned_cols=73 Identities=23% Similarity=0.288 Sum_probs=41.7
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccE
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDT 123 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~ 123 (216)
.++++|+-+||| .++.. ++..+...|+.+|.+++..+.......... +.....|. .+.. +..|+
T Consensus 17 ~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~-----~~~Dv 84 (155)
T cd01065 17 LKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG---IAIAYLDL--EELL-----AEADL 84 (155)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc---cceeecch--hhcc-----ccCCE
Confidence 467889999986 33333 333343579999999876655444332211 11222233 2221 57899
Q ss_pred EEEcCCCCC
Q psy17460 124 VIMNPPFGT 132 (216)
Q Consensus 124 vi~npp~~~ 132 (216)
|++.-|-..
T Consensus 85 vi~~~~~~~ 93 (155)
T cd01065 85 IINTTPVGM 93 (155)
T ss_pred EEeCcCCCC
Confidence 998766543
No 407
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.72 E-value=17 Score=28.32 Aligned_cols=77 Identities=18% Similarity=0.099 Sum_probs=47.0
Q ss_pred CCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.++.|+-.|+ +|.++..++ ..|. +|++++.++.........+... ..+.++.+|+.+.+-.... .-
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888884 566655544 3454 7999999887666555544332 2688899998332211110 01
Q ss_pred CcccEEEEcCC
Q psy17460 119 QKVDTVIMNPP 129 (216)
Q Consensus 119 ~~~D~vi~npp 129 (216)
..+|.||.+..
T Consensus 81 ~~~d~vi~~ag 91 (237)
T PRK07326 81 GGLDVLIANAG 91 (237)
T ss_pred CCCCEEEECCC
Confidence 36899997753
No 408
>PRK08628 short chain dehydrogenase; Provisional
Probab=76.58 E-value=14 Score=29.24 Aligned_cols=79 Identities=9% Similarity=0.079 Sum_probs=45.9
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
.+++++|=.|++ |.++.. +++.|. +|+.++.++...+.. ..+...+. ++.++.+|+.+.+-.... .
T Consensus 5 l~~~~ilItGas-ggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~-~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 5 LKDKVVIVTGGA-SGIGAAISLRLAEEGA-IPVIFGRSAPDDEFA-EELRALQP-RAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred cCCCEEEEeCCC-ChHHHHHHHHHHHcCC-cEEEEcCChhhHHHH-HHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHh
Confidence 367788888865 444443 444565 788888877655332 23333333 688899999332211110 1
Q ss_pred cCcccEEEEcCCC
Q psy17460 118 KQKVDTVIMNPPF 130 (216)
Q Consensus 118 ~~~~D~vi~npp~ 130 (216)
-+.+|.||.+...
T Consensus 81 ~~~id~vi~~ag~ 93 (258)
T PRK08628 81 FGRIDGLVNNAGV 93 (258)
T ss_pred cCCCCEEEECCcc
Confidence 1368999988754
No 409
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.57 E-value=21 Score=29.94 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=51.4
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
..+++|+-.|++.|. +.. +++.|. +|+.++.+++.++.....+...+. ++.++.+|+.+.+-.... .
T Consensus 6 l~~k~vlITGas~gI-G~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 6 IGRQVVVITGASAGV-GRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCCEEEEECCCCHH-HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 356788888865444 333 445565 899999998877766666655444 688899998332211110 1
Q ss_pred cCcccEEEEcCCCC
Q psy17460 118 KQKVDTVIMNPPFG 131 (216)
Q Consensus 118 ~~~~D~vi~npp~~ 131 (216)
-+.+|++|.|....
T Consensus 83 ~g~iD~lInnAg~~ 96 (334)
T PRK07109 83 LGPIDTWVNNAMVT 96 (334)
T ss_pred CCCCCEEEECCCcC
Confidence 14689999887543
No 410
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=76.56 E-value=13 Score=29.72 Aligned_cols=74 Identities=23% Similarity=0.198 Sum_probs=44.8
Q ss_pred CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--c------cc
Q psy17460 49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--S------VF 117 (216)
Q Consensus 49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~------~~ 117 (216)
++++++-.|++.|. ++..+++.|. +|+.++.+.+.++..... .+. ++.++.+|+ .+... . ..
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~---~~~-~~~~~~~D~--~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAA---HGD-AVVGVEGDV--RSLDDHKEAVARCVAA 76 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhh---cCC-ceEEEEecc--CCHHHHHHHHHHHHHH
Confidence 57788888875543 2233445565 899999887665543321 222 578888898 44211 0 01
Q ss_pred cCcccEEEEcCC
Q psy17460 118 KQKVDTVIMNPP 129 (216)
Q Consensus 118 ~~~~D~vi~npp 129 (216)
-+..|++|.|.-
T Consensus 77 ~g~id~li~~Ag 88 (262)
T TIGR03325 77 FGKIDCLIPNAG 88 (262)
T ss_pred hCCCCEEEECCC
Confidence 146799998864
No 411
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=76.56 E-value=20 Score=29.16 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=36.3
Q ss_pred CCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC---CceEEEEeccc
Q psy17460 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEI---TNCDAILFEIN 108 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~---~~v~~~~~d~~ 108 (216)
...|+.+|||.=+.+.-+.......++=+|. |+.++.-++.+...+. .+..++..|+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 3479999999887776553321134544554 5566666666665432 26888999983
No 412
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=76.51 E-value=8.1 Score=26.20 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=32.8
Q ss_pred ecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCCC
Q psy17460 56 LGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131 (216)
Q Consensus 56 ~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~ 131 (216)
+.||+|.-+..++.. ..++.+...|+ ++++...++ .+..... ..+|+|++-+++.
T Consensus 7 vvCgsG~~TS~m~~~----------------ki~~~l~~~gi-~~~v~~~~~--~e~~~~~--~~~D~iv~t~~~~ 61 (94)
T PRK10310 7 VACGGAVATSTMAAE----------------EIKELCQSHNI-PVELIQCRV--NEIETYM--DGVHLICTTARVD 61 (94)
T ss_pred EECCCchhHHHHHHH----------------HHHHHHHHCCC-eEEEEEecH--HHHhhhc--CCCCEEEECCccc
Confidence 567888765544322 23334444565 577777777 5544321 4689999888754
No 413
>PRK14851 hypothetical protein; Provisional
Probab=76.49 E-value=27 Score=32.72 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=46.3
Q ss_pred CCCEEEEecCC-CCHhH-HHHhHcCCCEEEEEeCChH-------------------HHHHHHHhhhHhCCC-ceEEEEec
Q psy17460 49 DGKTVLDLGCG-SGILT-FGSILLGADFCFALECDKE-------------------ILDIFIDNKNEFEIT-NCDAILFE 106 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~~-~~~~~~~~~~v~~iD~~~~-------------------~~~~~~~~~~~~~~~-~v~~~~~d 106 (216)
.+.+|+-+||| .|+.. ..++..|-++++-+|.|.- -.+.+...+....-. +|+.+...
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~ 121 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG 121 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 67899999999 78854 5577778788888885421 123333333322211 67777776
Q ss_pred ccccccccccccCcccEEEEcC
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~np 128 (216)
+...+.. ..-..+|+|+..-
T Consensus 122 i~~~n~~--~~l~~~DvVid~~ 141 (679)
T PRK14851 122 INADNMD--AFLDGVDVVLDGL 141 (679)
T ss_pred CChHHHH--HHHhCCCEEEECC
Confidence 6322211 1115799998644
No 414
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=76.37 E-value=8.8 Score=31.32 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=27.9
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcC------CCEEEEEeCCh
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLG------ADFCFALECDK 82 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~------~~~v~~iD~~~ 82 (216)
.++..++|+|||.|.++..++... ...++.||...
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 356699999999999998877653 25889999754
No 415
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=75.87 E-value=14 Score=30.65 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=41.7
Q ss_pred EEEEecCC-CCHhH-HHHhHcCCCEEEEEeCCh-------------------HHHHHHHHhhhHhCCC-ceEEEEecccc
Q psy17460 52 TVLDLGCG-SGILT-FGSILLGADFCFALECDK-------------------EILDIFIDNKNEFEIT-NCDAILFEINE 109 (216)
Q Consensus 52 ~vlD~g~G-tG~~~-~~~~~~~~~~v~~iD~~~-------------------~~~~~~~~~~~~~~~~-~v~~~~~d~~~ 109 (216)
+||-+||| .|+-. ..++..|.++++.+|.|. .-.+.|.+.++...-. +++.+.+++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i-- 78 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKI-- 78 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEeccc--
Confidence 47778887 55543 336666778888888542 1123344444332211 677777777
Q ss_pred cccccccccCcccEEEEc
Q psy17460 110 KSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 110 ~~~~~~~~~~~~D~vi~n 127 (216)
.+..... -..||+|++.
T Consensus 79 ~~~~~~f-~~~fdvVi~a 95 (291)
T cd01488 79 QDKDEEF-YRQFNIIICG 95 (291)
T ss_pred CchhHHH-hcCCCEEEEC
Confidence 3332111 1589999974
No 416
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=75.72 E-value=6.4 Score=30.31 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=39.8
Q ss_pred EEEEecCCCCHh--HHHHhHcCCCEEEEEeCChHHHHHHHHhhh---HhCC----------CceEEEEeccccccccccc
Q psy17460 52 TVLDLGCGSGIL--TFGSILLGADFCFALECDKEILDIFIDNKN---EFEI----------TNCDAILFEINEKSLDSSV 116 (216)
Q Consensus 52 ~vlD~g~GtG~~--~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~---~~~~----------~~v~~~~~d~~~~~~~~~~ 116 (216)
+|--+|.|-=.+ +..++..|. +|+|+|++++.++..+.... .-++ .++.+. .|. .+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~--~~ai--- 74 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDI--EEAI--- 74 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEH--HHHH---
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhh--hhhh---
Confidence 455565553222 233555665 99999999998877654311 0010 022221 222 1111
Q ss_pred ccCcccEEEEcCCCCCC-CCCCCHHHHHHHhhc
Q psy17460 117 FKQKVDTVIMNPPFGTR-NCGIDLAFVQYAADI 148 (216)
Q Consensus 117 ~~~~~D~vi~npp~~~~-~~~~~~~~~~~~l~~ 148 (216)
...|++|.+.|-... +...+..++..+.+.
T Consensus 75 --~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~ 105 (185)
T PF03721_consen 75 --KDADVVFICVPTPSDEDGSPDLSYVESAIES 105 (185)
T ss_dssp --HH-SEEEE----EBETTTSBETHHHHHHHHH
T ss_pred --hccceEEEecCCCccccCCccHHHHHHHHHH
Confidence 357888876654443 444566666666544
No 417
>PRK08589 short chain dehydrogenase; Validated
Probab=75.60 E-value=25 Score=28.36 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=47.8
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.+++++|-.|++.|. ++..++..|. +|+.++.+ +..+.....+...+. ++.++.+|+.+.+-.... .-
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 367788888876654 2233445564 89999998 444443334433332 688889998322211100 11
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+..|++|.|..+.
T Consensus 81 g~id~li~~Ag~~ 93 (272)
T PRK08589 81 GRVDVLFNNAGVD 93 (272)
T ss_pred CCcCEEEECCCCC
Confidence 4689999987654
No 418
>PRK07890 short chain dehydrogenase; Provisional
Probab=75.54 E-value=24 Score=27.88 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=48.6
Q ss_pred CCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460 49 DGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ 119 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~ 119 (216)
++++|+-.|++.|.- +..++..|. +|+.++.++...+.....+...+. ++.++..|+.+.+-... ..-+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 567888888654442 233445565 899999988766655555443333 67889999932221100 0114
Q ss_pred cccEEEEcCCC
Q psy17460 120 KVDTVIMNPPF 130 (216)
Q Consensus 120 ~~D~vi~npp~ 130 (216)
.+|.||.+.-.
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68999988743
No 419
>KOG3350|consensus
Probab=75.43 E-value=35 Score=26.33 Aligned_cols=96 Identities=18% Similarity=0.288 Sum_probs=52.7
Q ss_pred CccccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHc--CCCEEEEEeCChHHHHHHHHhhhHhCCCceE
Q psy17460 24 LEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILL--GADFCFALECDKEILDIFIDNKNEFEITNCD 101 (216)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~--~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~ 101 (216)
+.||-...+.+..++...... ...+.+|.-+.|-+=.+-...... +..+|+-+|.+.. +...+ -+
T Consensus 50 lsqfwy~~eta~~La~e~v~~--s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkR--------Fe~yg---~e 116 (217)
T KOG3350|consen 50 LSQFWYSDETARKLAAERVEA--SGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKR--------FELYG---TE 116 (217)
T ss_pred hhhhhcCHHHHHHHHHHHHhh--cccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhh--------HHhcc---ce
Confidence 455444455555555555442 235567777777664422222221 2358888888863 33333 24
Q ss_pred EEEecccc-cccccccccCcccEEEEcCCCCCC
Q psy17460 102 AILFEINE-KSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 102 ~~~~d~~~-~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
|+--|... .++|... ...||+|+.+|||-..
T Consensus 117 FvfYDyN~p~dlp~~l-k~~fdiivaDPPfL~~ 148 (217)
T KOG3350|consen 117 FVFYDYNCPLDLPDEL-KAHFDIIVADPPFLSE 148 (217)
T ss_pred eEEeccCCCCCCHHHH-HhcccEEEeCCccccc
Confidence 55445411 2233222 2679999999999865
No 420
>PRK05855 short chain dehydrogenase; Validated
Probab=75.38 E-value=26 Score=31.32 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=49.8
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.+.++|-+|+ +|.++.. ++..|. +|+.++.+.+..+.....+...+. ++.++.+|+.+.+-.... .-
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 4567777776 4555444 444455 799999998777666555554443 688999999332211110 11
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+.+|++|.|.-..
T Consensus 391 g~id~lv~~Ag~~ 403 (582)
T PRK05855 391 GVPDIVVNNAGIG 403 (582)
T ss_pred CCCcEEEECCccC
Confidence 4689999887553
No 421
>PRK07774 short chain dehydrogenase; Provisional
Probab=75.19 E-value=34 Score=26.84 Aligned_cols=78 Identities=15% Similarity=0.074 Sum_probs=47.7
Q ss_pred CCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--c------c
Q psy17460 49 DGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--S------V 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~------~ 116 (216)
.++++|-.| |+|.++..++ +.|. +|+.++.+++........+...+. ++.++.+|+ .+... . .
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl--~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGG-TAIAVQVDV--SDPDSAKAMADATVS 79 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCC--CCHHHHHHHHHHHHH
Confidence 567888888 4455554444 4454 899999987665554444433222 567888898 44321 0 0
Q ss_pred ccCcccEEEEcCCCC
Q psy17460 117 FKQKVDTVIMNPPFG 131 (216)
Q Consensus 117 ~~~~~D~vi~npp~~ 131 (216)
..+.+|.||.+..+.
T Consensus 80 ~~~~id~vi~~ag~~ 94 (250)
T PRK07774 80 AFGGIDYLVNNAAIY 94 (250)
T ss_pred HhCCCCEEEECCCCc
Confidence 113689999887653
No 422
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=75.12 E-value=24 Score=27.90 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=51.0
Q ss_pred CCCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cc
Q psy17460 48 IDGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VF 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~ 117 (216)
..+++||-.|+ +|.++..++ +.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-... ..
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHh
Confidence 36788998885 555555444 3454 899999998777665555544343 57888899933221110 01
Q ss_pred cCcccEEEEcCCCC
Q psy17460 118 KQKVDTVIMNPPFG 131 (216)
Q Consensus 118 ~~~~D~vi~npp~~ 131 (216)
-...|.+|.+....
T Consensus 85 ~~~~d~li~~ag~~ 98 (255)
T PRK07523 85 IGPIDILVNNAGMQ 98 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 14589999887654
No 423
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=75.11 E-value=8.2 Score=34.73 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=33.4
Q ss_pred CCCCEEEEecCCCCH-hHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460 48 IDGKTVLDLGCGSGI-LTFGSILL-GADFCFALECDKEILDIFID 90 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~-~~~~~~~~-~~~~v~~iD~~~~~~~~~~~ 90 (216)
.++.+|+-+|||.-. .++..++. |+ .|+++|.+++.++.++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 468899999999655 45555554 66 89999999998888776
No 424
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=75.10 E-value=2.2 Score=34.80 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=28.2
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCC
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECD 81 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~ 81 (216)
.+++.+.|+++|||.++..+-+.|. .|++-|+-
T Consensus 26 ~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDle 58 (330)
T COG3392 26 LSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDLE 58 (330)
T ss_pred cCCCeeeeeccCccHHHHHHHHhcc-hhhhchHH
Confidence 4678999999999999999988876 78887763
No 425
>PRK06182 short chain dehydrogenase; Validated
Probab=75.04 E-value=16 Score=29.31 Aligned_cols=75 Identities=9% Similarity=0.212 Sum_probs=44.7
Q ss_pred CCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
++++++-.|++ |.++..++ ..|. +|++++.+++.++.... . +++++.+|+.+.+-.... ..
T Consensus 2 ~~k~vlItGas-ggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 2 QKKVALVTGAS-SGIGKATARRLAAQGY-TVYGAARRVDKMEDLAS----L---GVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 35678888864 44554443 3454 89999988765543221 1 467888998332211110 11
Q ss_pred CcccEEEEcCCCCC
Q psy17460 119 QKVDTVIMNPPFGT 132 (216)
Q Consensus 119 ~~~D~vi~npp~~~ 132 (216)
+.+|++|.|..+..
T Consensus 73 ~~id~li~~ag~~~ 86 (273)
T PRK06182 73 GRIDVLVNNAGYGS 86 (273)
T ss_pred CCCCEEEECCCcCC
Confidence 36899999987653
No 426
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=75.04 E-value=50 Score=28.86 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=57.2
Q ss_pred CEEEEecCCC-CH-hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceE-----EEEeccccccccccc-ccCccc
Q psy17460 51 KTVLDLGCGS-GI-LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCD-----AILFEINEKSLDSSV-FKQKVD 122 (216)
Q Consensus 51 ~~vlD~g~Gt-G~-~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~-----~~~~d~~~~~~~~~~-~~~~~D 122 (216)
.+|--+|-|= |. ++..+++.|. +|+|+||++..++....--..-.-...+ .+...- +....+. .....|
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~--lraTtd~~~l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGK--LRATTDPEELKECD 86 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCC--ceEecChhhcccCC
Confidence 5677777663 33 2233555565 8999999998887654321100000000 000010 1111110 003678
Q ss_pred EEEEcCCCCCC-CCCCCHHHHHHHhhc----CCc-----eEEEeeCcchHHHHHHHHH
Q psy17460 123 TVIMNPPFGTR-NCGIDLAFVQYAADI----SKV-----VYSLHKTSTRESILKKIQA 170 (216)
Q Consensus 123 ~vi~npp~~~~-~~~~~~~~~~~~l~~----~~~-----ly~~~~~~~~~~~~~~~~~ 170 (216)
+++..-|-... ++..|+.++.++.+. +++ +-+..+..+-+++..-..+
T Consensus 87 v~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 87 VFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred EEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 77766555544 577788777766443 222 3344445555666544433
No 427
>PRK06940 short chain dehydrogenase; Provisional
Probab=74.89 E-value=16 Score=29.53 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=46.7
Q ss_pred CEEEEecCCCCHhHHHHhHc---CCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc-----ccCccc
Q psy17460 51 KTVLDLGCGSGILTFGSILL---GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV-----FKQKVD 122 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~---~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----~~~~~D 122 (216)
+.++-.|+ |.++..+++. | .+|+.++.+++.++.....+...+. ++.++.+|+.+.+-.... .-+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G-~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAG-KKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 45666675 3566555543 3 5899999988766655554444333 678889998332211000 114689
Q ss_pred EEEEcCCCC
Q psy17460 123 TVIMNPPFG 131 (216)
Q Consensus 123 ~vi~npp~~ 131 (216)
.+|.|.-..
T Consensus 79 ~li~nAG~~ 87 (275)
T PRK06940 79 GLVHTAGVS 87 (275)
T ss_pred EEEECCCcC
Confidence 999988654
No 428
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.83 E-value=18 Score=31.67 Aligned_cols=73 Identities=25% Similarity=0.239 Sum_probs=45.0
Q ss_pred CCCEEEEecCCCCHhH--HHHhHcCCCEEEEEeCCh-HHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460 49 DGKTVLDLGCGSGILT--FGSILLGADFCFALECDK-EILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI 125 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~--~~~~~~~~~~v~~iD~~~-~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi 125 (216)
.+++|+-+|+|....+ ..++..|. .|+++|.+. +.+......+... +++++.+|. .+-. .+.+|+||
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~---~~~~~~~~~--~~~~----~~~~d~vv 73 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGEL---GIELVLGEY--PEEF----LEGVDLVV 73 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhc---CCEEEeCCc--chhH----hhcCCEEE
Confidence 5788999998874443 23445565 899999975 3332222223322 456788887 4321 15799999
Q ss_pred EcCCCC
Q psy17460 126 MNPPFG 131 (216)
Q Consensus 126 ~npp~~ 131 (216)
.++-..
T Consensus 74 ~~~g~~ 79 (450)
T PRK14106 74 VSPGVP 79 (450)
T ss_pred ECCCCC
Confidence 877543
No 429
>KOG2352|consensus
Probab=74.49 E-value=1.7 Score=38.45 Aligned_cols=77 Identities=16% Similarity=0.045 Sum_probs=51.2
Q ss_pred CCCEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-----cccCccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-----VFKQKVD 122 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~~~~D 122 (216)
.+..+|-+|-|.|.++..+.... ...+++++++|.+++.+..+.....-.+.++...|. ...... .....||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dG--l~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADG--LDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhc--hHHHHHHhhccccccCCc
Confidence 34578889999999987765553 379999999999999999987544322234444444 332211 1225699
Q ss_pred EEEEc
Q psy17460 123 TVIMN 127 (216)
Q Consensus 123 ~vi~n 127 (216)
+++.+
T Consensus 373 vl~~d 377 (482)
T KOG2352|consen 373 VLMVD 377 (482)
T ss_pred EEEEE
Confidence 99864
No 430
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=74.42 E-value=12 Score=32.24 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=25.4
Q ss_pred CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCC
Q psy17460 49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECD 81 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~ 81 (216)
.+.+|+-+||| .|.. +..++..|..+++.+|-+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999998 4554 355777787899999987
No 431
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=74.37 E-value=10 Score=33.12 Aligned_cols=60 Identities=22% Similarity=0.072 Sum_probs=39.0
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCCCHh-HHHHhH-cCCCEEEEEeCChHHHHHHHH
Q psy17460 27 YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGIL-TFGSIL-LGADFCFALECDKEILDIFID 90 (216)
Q Consensus 27 ~~t~~~~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~~-~~~~~~-~~~~~v~~iD~~~~~~~~~~~ 90 (216)
|.+.+...+.+...... ...|++|+-+|+|.=.. ....++ .|+ +|+.+|.++.....|+.
T Consensus 182 ~g~g~s~~~~i~r~t~~---~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 182 YGCRESLIDGIKRATDV---MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM 243 (413)
T ss_pred chhchhhHHHHHHhcCC---CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence 55666665555444322 25799999999995333 333343 355 89999999887766654
No 432
>PRK08328 hypothetical protein; Provisional
Probab=73.95 E-value=16 Score=29.15 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=25.0
Q ss_pred CCCEEEEecCC-CCHhH-HHHhHcCCCEEEEEeCC
Q psy17460 49 DGKTVLDLGCG-SGILT-FGSILLGADFCFALECD 81 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~~-~~~~~~~~~~v~~iD~~ 81 (216)
.+.+|+-+||| .|+.. ..++..|..+++.+|.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 56789999999 56643 45777788899999854
No 433
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.92 E-value=26 Score=27.31 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=46.5
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc-----c-cc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS-----V-FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~-~~ 118 (216)
++++|+-.|++ |.++.. +++.|. +|++++.+++..+.+.......+ ++.++.+|+.+.+-... . .-
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 57789999986 444433 334455 89999998876665544433322 57888999832221100 0 01
Q ss_pred CcccEEEEcCC
Q psy17460 119 QKVDTVIMNPP 129 (216)
Q Consensus 119 ~~~D~vi~npp 129 (216)
+.+|.++.+..
T Consensus 80 ~~id~ii~~ag 90 (238)
T PRK05786 80 NAIDGLVVTVG 90 (238)
T ss_pred CCCCEEEEcCC
Confidence 35798888765
No 434
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=73.88 E-value=20 Score=23.47 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEecCCCCH-hH--HHHhHcCC-CEEEEEeCC
Q psy17460 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGI-LT--FGSILLGA-DFCFALECD 81 (216)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~vlD~g~GtG~-~~--~~~~~~~~-~~v~~iD~~ 81 (216)
..+.++..+...-....+++||-+||.||. ++ +.++. +. ...+||-..
T Consensus 22 ~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF-g~gA~TiGV~fE 73 (78)
T PF12242_consen 22 NVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF-GAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH-CC--EEEEEE--
T ss_pred HHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh-cCCCCEEEEeec
Confidence 334455666654233345899999999998 44 33333 33 577777654
No 435
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.77 E-value=29 Score=27.73 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=45.3
Q ss_pred CCCCEEEEecCCCC-HhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSG-ILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------V 116 (216)
Q Consensus 48 ~~~~~vlD~g~GtG-~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~ 116 (216)
.+++++|-.|+++| .++.. +++.|. +|+.++.+....+.+.......+ .+.++.+|+.+.+-... .
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHH
Confidence 36889999998762 44443 445565 78888887654332222222212 34577888832221100 0
Q ss_pred ccCcccEEEEcCCC
Q psy17460 117 FKQKVDTVIMNPPF 130 (216)
Q Consensus 117 ~~~~~D~vi~npp~ 130 (216)
.-+..|+++.|.-+
T Consensus 85 ~~g~ld~lv~nAg~ 98 (258)
T PRK07533 85 EWGRLDFLLHSIAF 98 (258)
T ss_pred HcCCCCEEEEcCcc
Confidence 11468999998754
No 436
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.69 E-value=15 Score=30.81 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCCCCEEEEecCC-CCHhHHHHhHc-CCCEEEEEeCChHHHHHHHH
Q psy17460 47 DIDGKTVLDLGCG-SGILTFGSILL-GADFCFALECDKEILDIFID 90 (216)
Q Consensus 47 ~~~~~~vlD~g~G-tG~~~~~~~~~-~~~~v~~iD~~~~~~~~~~~ 90 (216)
..++++||-.||| .|.+++.+++. |+.+|+++|.+++.++.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 3468889988874 23333444544 55579999999988887765
No 437
>PRK06125 short chain dehydrogenase; Provisional
Probab=73.57 E-value=31 Score=27.36 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=49.3
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--cccCccc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--VFKQKVD 122 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~D 122 (216)
.++++|-.|++.| ++.. ++..|. +|++++.+++..+.....+....-.++.++.+|+.+.+-... ..-+..|
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 5788898897544 3333 445565 899999998777665555543221257888888832221100 0115789
Q ss_pred EEEEcCCC
Q psy17460 123 TVIMNPPF 130 (216)
Q Consensus 123 ~vi~npp~ 130 (216)
.+|.|.-.
T Consensus 84 ~lv~~ag~ 91 (259)
T PRK06125 84 ILVNNAGA 91 (259)
T ss_pred EEEECCCC
Confidence 99988654
No 438
>PRK07201 short chain dehydrogenase; Provisional
Probab=73.48 E-value=20 Score=32.94 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=50.1
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
..++++|-.|++. .++.. ++..|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-.... .
T Consensus 369 ~~~k~vlItGas~-giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 369 LVGKVVLITGASS-GIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKGG-TAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CCCCEEEEeCCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHh
Confidence 3467788777654 44443 444555 899999998877666555544333 688899999332211110 1
Q ss_pred cCcccEEEEcCCCC
Q psy17460 118 KQKVDTVIMNPPFG 131 (216)
Q Consensus 118 ~~~~D~vi~npp~~ 131 (216)
-+..|+++.|.-..
T Consensus 446 ~g~id~li~~Ag~~ 459 (657)
T PRK07201 446 HGHVDYLVNNAGRS 459 (657)
T ss_pred cCCCCEEEECCCCC
Confidence 13689999987654
No 439
>PRK07806 short chain dehydrogenase; Provisional
Probab=73.44 E-value=27 Score=27.38 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=43.8
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChH-HHHHHHHhhhHhCCCceEEEEeccccccccccc------
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKE-ILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------ 116 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------ 116 (216)
.+++++|-.|++. .++.. ++..|. +|++++.+.. ..+.....+...+. ++.++.+|+.+.+-....
T Consensus 4 ~~~k~vlItGasg-giG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSR-GIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCC-cHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3577899888643 34433 334454 7888876542 33333333333332 578889998332211110
Q ss_pred ccCcccEEEEcCCC
Q psy17460 117 FKQKVDTVIMNPPF 130 (216)
Q Consensus 117 ~~~~~D~vi~npp~ 130 (216)
.-+.+|.++.|...
T Consensus 81 ~~~~~d~vi~~ag~ 94 (248)
T PRK07806 81 EFGGLDALVLNASG 94 (248)
T ss_pred hCCCCcEEEECCCC
Confidence 01358999987644
No 440
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=73.43 E-value=11 Score=31.44 Aligned_cols=47 Identities=9% Similarity=-0.011 Sum_probs=35.8
Q ss_pred CCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh
Q psy17460 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF 95 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~ 95 (216)
..|.+|.-+|+|-..+...++.. +..|.+||+++..+..-+-.+...
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHHHH
Confidence 36789999999976666666665 569999999998887766655443
No 441
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=73.37 E-value=30 Score=27.16 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=46.2
Q ss_pred CEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc-----c-ccccCc
Q psy17460 51 KTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD-----S-SVFKQK 120 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~-~~~~~~ 120 (216)
+++|-.| |+|.++..++ +.|. +|++++.++...+.....+...+. ++.++.+|+.+.+-. . ......
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGG-SVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4566666 4566555544 3454 899999988766655554443332 688899999332200 0 001145
Q ss_pred ccEEEEcCCC
Q psy17460 121 VDTVIMNPPF 130 (216)
Q Consensus 121 ~D~vi~npp~ 130 (216)
.|.||.+.-.
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 8999987744
No 442
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.27 E-value=28 Score=27.21 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=48.1
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc-----c---c
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS-----S---V 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~---~ 116 (216)
+++++|-.|++ |.++.. +++.|. +|+.++.+++..+.+...+...+. ++.++.+|+ .+... . .
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~--~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGT-EVRGYAANV--TDEEDVEATFAQIAE 78 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCC--CCHHHHHHHHHHHHH
Confidence 57789988864 444433 344454 899999998766655555544332 678888998 43211 0 0
Q ss_pred ccCcccEEEEcCCC
Q psy17460 117 FKQKVDTVIMNPPF 130 (216)
Q Consensus 117 ~~~~~D~vi~npp~ 130 (216)
....+|.||.+...
T Consensus 79 ~~~~id~vi~~ag~ 92 (253)
T PRK08217 79 DFGQLNGLINNAGI 92 (253)
T ss_pred HcCCCCEEEECCCc
Confidence 01468999988754
No 443
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.25 E-value=15 Score=31.32 Aligned_cols=78 Identities=9% Similarity=-0.006 Sum_probs=45.6
Q ss_pred CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCCh-------------------HHHHHHHHhhhHhCCC-ceEEEEec
Q psy17460 49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECDK-------------------EILDIFIDNKNEFEIT-NCDAILFE 106 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~~-------------------~~~~~~~~~~~~~~~~-~v~~~~~d 106 (216)
.+.+|+-+||| .|+. +..++..|-.+++.+|-+. .-.+.+.+.+....-. +++.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 56799999998 4554 3457777778899998664 2334455555443321 45555555
Q ss_pred ccccccccccccCcccEEEEcC
Q psy17460 107 INEKSLDSSVFKQKVDTVIMNP 128 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~D~vi~np 128 (216)
+...+... .-..+|+|+...
T Consensus 107 i~~~~~~~--~~~~~DvVvd~~ 126 (355)
T PRK05597 107 LTWSNALD--ELRDADVILDGS 126 (355)
T ss_pred cCHHHHHH--HHhCCCEEEECC
Confidence 52111111 115799998643
No 444
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=73.20 E-value=19 Score=30.93 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=61.9
Q ss_pred EEEecCCCCHhHHHHh----HcCC-CEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 53 VLDLGCGSGILTFGSI----LLGA-DFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 53 vlD~g~GtG~~~~~~~----~~~~-~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
|+-+|+ |..+..++ +... .+|+..|.+.+..+.....+ .+. +++.+..|+.+.+-... .-...|+|+..
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~~~-~~~~~~~d~~~~~~l~~-~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--LGD-RVEAVQVDVNDPESLAE-LLRGCDVVINC 74 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----TTT-TEEEEE--TTTHHHHHH-HHTTSSEEEE-
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--ccc-ceeEEEEecCCHHHHHH-HHhcCCEEEEC
Confidence 566788 55554433 3343 38999999998876655543 122 78999999933322111 11567999955
Q ss_pred -CCCCCCCCCCCHHHHHHHhhcCCceEEEeeCcchHHHHHHHHHhcCccceeeeeeeecCCCc
Q psy17460 128 -PPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQ 189 (216)
Q Consensus 128 -pp~~~~~~~~~~~~~~~~l~~~~~ly~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 189 (216)
|||. .....+.|++.+.+... .......+.+....+-+. +..++...|+..+-
T Consensus 75 ~gp~~------~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~-g~~~l~~~G~~PGl 128 (386)
T PF03435_consen 75 AGPFF------GEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEA-GVTALPGCGFDPGL 128 (386)
T ss_dssp SSGGG------HHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHT-TSEEE-S-BTTTBH
T ss_pred Cccch------hHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhh-CCEEEeCcccccch
Confidence 5552 23467777777765333 111123333222333223 66788888877654
No 445
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=73.07 E-value=30 Score=27.47 Aligned_cols=79 Identities=20% Similarity=0.080 Sum_probs=50.6
Q ss_pred CCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~ 118 (216)
+++++|-.|+ +|.++..++ ..|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-... ...
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 6788998884 555555544 3455 899999988777666655544333 67889999933221100 011
Q ss_pred CcccEEEEcCCC
Q psy17460 119 QKVDTVIMNPPF 130 (216)
Q Consensus 119 ~~~D~vi~npp~ 130 (216)
..+|.|+.+...
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 468999988765
No 446
>PRK07062 short chain dehydrogenase; Provisional
Probab=72.75 E-value=32 Score=27.36 Aligned_cols=81 Identities=20% Similarity=0.059 Sum_probs=50.8
Q ss_pred CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEeccccccccc--c------
Q psy17460 48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDS--S------ 115 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~--~------ 115 (216)
..++++|-.|++.|.- +..++..|. +|+.++.+++..+.+...+....- .++.++.+|+ .+... .
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~v~~~~~~~~ 82 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDV--LDEADVAAFAAAVE 82 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecC--CCHHHHHHHHHHHH
Confidence 3678899999766542 233445565 899999998777666555543311 1577888898 44321 0
Q ss_pred cccCcccEEEEcCCCC
Q psy17460 116 VFKQKVDTVIMNPPFG 131 (216)
Q Consensus 116 ~~~~~~D~vi~npp~~ 131 (216)
..-+.+|.++.|.-..
T Consensus 83 ~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 83 ARFGGVDMLVNNAGQG 98 (265)
T ss_pred HhcCCCCEEEECCCCC
Confidence 0114689999887553
No 447
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=72.65 E-value=17 Score=30.04 Aligned_cols=78 Identities=15% Similarity=-0.039 Sum_probs=44.3
Q ss_pred CCCEEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHHHHHhhhHhCC-CceEEEEeccccccccc-ccccCccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDIFIDNKNEFEI-TNCDAILFEINEKSLDS-SVFKQKVD 122 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~-~~~~~~~D 122 (216)
.+++||-.| |+|.++..+++ .|. +|+++..++.............+. .+++++.+|+ .+... ...-+.+|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~--~d~~~~~~~~~~~d 79 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADL--LDEGSFELAIDGCE 79 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCC--CCchHHHHHHcCCC
Confidence 467888887 56776655554 344 787776665433322221111121 2688999999 44321 11113589
Q ss_pred EEEEcCCC
Q psy17460 123 TVIMNPPF 130 (216)
Q Consensus 123 ~vi~npp~ 130 (216)
.||.+...
T Consensus 80 ~vih~A~~ 87 (325)
T PLN02989 80 TVFHTASP 87 (325)
T ss_pred EEEEeCCC
Confidence 99987654
No 448
>PRK12939 short chain dehydrogenase; Provisional
Probab=72.58 E-value=34 Score=26.76 Aligned_cols=80 Identities=14% Similarity=0.008 Sum_probs=48.6
Q ss_pred CCCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
.+++++|=.|+ +|.++..++ +.|. +|++++.+++........+...+. ++.++.+|+.+.+-.... .
T Consensus 5 ~~~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 5 LAGKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGG-RAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35778887775 455554443 4454 789999888776665555443332 688999999332211110 0
Q ss_pred cCcccEEEEcCCC
Q psy17460 118 KQKVDTVIMNPPF 130 (216)
Q Consensus 118 ~~~~D~vi~npp~ 130 (216)
-+.+|.|+.+.-.
T Consensus 82 ~~~id~vi~~ag~ 94 (250)
T PRK12939 82 LGGLDGLVNNAGI 94 (250)
T ss_pred cCCCCEEEECCCC
Confidence 1368999987543
No 449
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=72.55 E-value=29 Score=27.44 Aligned_cols=81 Identities=22% Similarity=0.214 Sum_probs=49.4
Q ss_pred CCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460 49 DGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ 119 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~ 119 (216)
.+++||-.|++.|.- +..++..|. +++.++.+.+..+.....+...+. ++.++.+|+.+.+-... ..-.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 578999999665542 223445565 788888887776655554443332 57788899833221111 0114
Q ss_pred cccEEEEcCCCC
Q psy17460 120 KVDTVIMNPPFG 131 (216)
Q Consensus 120 ~~D~vi~npp~~ 131 (216)
.+|.++.+..+.
T Consensus 88 ~~d~li~~ag~~ 99 (255)
T PRK06113 88 KVDILVNNAGGG 99 (255)
T ss_pred CCCEEEECCCCC
Confidence 689999887653
No 450
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=72.51 E-value=42 Score=28.46 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=44.3
Q ss_pred CCCEEEEecCCCCHhHHHHhHc------------C----C-CEEEEEeCChHHHHHHHHhhhHhC-----CCc--eEEEE
Q psy17460 49 DGKTVLDLGCGSGILTFGSILL------------G----A-DFCFALECDKEILDIFIDNKNEFE-----ITN--CDAIL 104 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~------------~----~-~~v~~iD~~~~~~~~~~~~~~~~~-----~~~--v~~~~ 104 (216)
+.-+|+|+||.+|..++.+... + + -+|+.-|+-.+=-...-+.+.... ..+ +..+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4559999999999988765421 0 0 278888865444333333332220 113 55678
Q ss_pred ecccccccccccccCcccEEEEcCCCCCC
Q psy17460 105 FEINEKSLDSSVFKQKVDTVIMNPPFGTR 133 (216)
Q Consensus 105 ~d~~~~~~~~~~~~~~~D~vi~npp~~~~ 133 (216)
|.+ ..-.+.. ++.|++++.-..|+.
T Consensus 96 gSF--y~rLfP~--~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 96 GSF--YGRLFPS--NSVHFGHSSYALHWL 120 (334)
T ss_dssp S-T--TS--S-T--T-EEEEEEES-TTB-
T ss_pred chh--hhccCCC--CceEEEEEechhhhc
Confidence 888 6655544 799999998888886
No 451
>PRK07074 short chain dehydrogenase; Provisional
Probab=72.22 E-value=20 Score=28.38 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=44.6
Q ss_pred CCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccc------cC
Q psy17460 50 GKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVF------KQ 119 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~------~~ 119 (216)
++++|-.|++.| ++.. +++.|. +|++++.++...+.....+. +. ++.++.+|+.+.+-..... -+
T Consensus 2 ~k~ilItGat~~-iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~--~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 2 KRTALVTGAAGG-IGQALARRFLAAGD-RVLALDIDAAALAAFADALG--DA-RFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred CCEEEEECCcch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--CC-ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 356777777554 3333 444554 89999998766554433331 11 5788999994333211100 02
Q ss_pred cccEEEEcCCC
Q psy17460 120 KVDTVIMNPPF 130 (216)
Q Consensus 120 ~~D~vi~npp~ 130 (216)
.+|.|+.+...
T Consensus 77 ~~d~vi~~ag~ 87 (257)
T PRK07074 77 PVDVLVANAGA 87 (257)
T ss_pred CCCEEEECCCC
Confidence 58999988754
No 452
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=72.16 E-value=18 Score=28.77 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=44.0
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cc
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VF 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~ 117 (216)
..++++|-.|+..| ++.. +++.|. +|++++.+.. ......+...+. ++..+..|+.+.+-... ..
T Consensus 8 l~~k~~lItG~~~g-IG~a~a~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 8 LEGKVAVVTGCDTG-LGQGMALGLAEAGC-DIVGINIVEP--TETIEQVTALGR-RFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEecCcch--HHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHH
Confidence 36788888887544 4433 444554 7888887542 122222222232 57788889833221111 01
Q ss_pred cCcccEEEEcCCCC
Q psy17460 118 KQKVDTVIMNPPFG 131 (216)
Q Consensus 118 ~~~~D~vi~npp~~ 131 (216)
.+..|++|.|+-+.
T Consensus 83 ~~~~D~li~~Ag~~ 96 (253)
T PRK08993 83 FGHIDILVNNAGLI 96 (253)
T ss_pred hCCCCEEEECCCCC
Confidence 14689999887654
No 453
>PLN02780 ketoreductase/ oxidoreductase
Probab=71.88 E-value=24 Score=29.46 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=40.3
Q ss_pred CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhC-CCceEEEEecc
Q psy17460 49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFE-ITNCDAILFEI 107 (216)
Q Consensus 49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~-~~~v~~~~~d~ 107 (216)
.|++++-.|++.|. ++..+++.|. +|+.++.+++.++.....+.... -.++..+..|+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl 113 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDF 113 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEEC
Confidence 47889999976664 3444556665 89999999988877666654421 11577778888
No 454
>KOG0919|consensus
Probab=71.76 E-value=3.9 Score=33.03 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=46.8
Q ss_pred CCEEEEecCCCCHhHHHH--hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEc
Q psy17460 50 GKTVLDLGCGSGILTFGS--ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~--~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~n 127 (216)
+-+|+++-.|.|.+-.++ +.-.+.-|.++|+++-+-+.-..|...+-++.-++.-..+ .++.. -++|.+.+.
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~--kefd~----l~~~m~lMS 76 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTV--KEFDK----LQANMLLMS 76 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeH--hhhhh----cccceEeeC
Confidence 358999999999975444 4444456779999997666655552221111112222222 22221 378999999
Q ss_pred CCCCCC
Q psy17460 128 PPFGTR 133 (216)
Q Consensus 128 pp~~~~ 133 (216)
||....
T Consensus 77 PpCQPf 82 (338)
T KOG0919|consen 77 PPCQPF 82 (338)
T ss_pred CCCCch
Confidence 988764
No 455
>PRK09242 tropinone reductase; Provisional
Probab=71.45 E-value=32 Score=27.21 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=50.2
Q ss_pred CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHh--CCCceEEEEeccccccccc------ccc
Q psy17460 49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEF--EITNCDAILFEINEKSLDS------SVF 117 (216)
Q Consensus 49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~------~~~ 117 (216)
.++++|-.|++.|. ++..++..|. +|+.++.+++..+.....+... +. ++.++.+|+.+.+-.. ...
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPER-EVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCC-eEEEEECCCCCHHHHHHHHHHHHHH
Confidence 57889988885543 2233445565 8999999887776665555433 22 6888899983222110 001
Q ss_pred cCcccEEEEcCCCC
Q psy17460 118 KQKVDTVIMNPPFG 131 (216)
Q Consensus 118 ~~~~D~vi~npp~~ 131 (216)
-+.+|.++.+....
T Consensus 86 ~g~id~li~~ag~~ 99 (257)
T PRK09242 86 WDGLHILVNNAGGN 99 (257)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999887653
No 456
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=71.42 E-value=3 Score=36.04 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=46.4
Q ss_pred CCEEEEecCCCCHhHHHHhHc------------C---C-CEEEEEeCChHHHHHHHHhhhH--------------hCCCc
Q psy17460 50 GKTVLDLGCGSGILTFGSILL------------G---A-DFCFALECDKEILDIFIDNKNE--------------FEITN 99 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~~~------------~---~-~~v~~iD~~~~~~~~~~~~~~~--------------~~~~~ 99 (216)
...|+|+|||+|..++.+... + + -+|+.-|+-.+=-+..-+.+.. .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 458999999999876544211 1 1 3666667544333322222211 01001
Q ss_pred --eEEEEecccccccccccccCcccEEEEcCCCCCCC
Q psy17460 100 --CDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRN 134 (216)
Q Consensus 100 --v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~~~~~ 134 (216)
+..+.|.+ ..-.+.. ++.+++++.-..|+..
T Consensus 144 ~f~~gvpGSF--Y~RLfP~--~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 144 YFAAGVPGSF--YRRLFPA--RSIDVFHSAFSLHWLS 176 (386)
T ss_pred eEEEecCccc--cccccCC--CceEEEEeeccceecc
Confidence 34455677 5544443 7999999988888873
No 457
>PRK07814 short chain dehydrogenase; Provisional
Probab=71.26 E-value=34 Score=27.26 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=49.0
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--c------
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--V------ 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~------ 116 (216)
+++++|-.|+ +|.++.. ++..|. +|++++.+++..+.....+...+. ++.++.+|+ .+...- .
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~--~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGR-RAHVVAADL--AHPEATAGLAGQAVE 83 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccC--CCHHHHHHHHHHHHH
Confidence 5778888885 4555544 344555 899999988776655555443332 578888998 443211 0
Q ss_pred ccCcccEEEEcCCC
Q psy17460 117 FKQKVDTVIMNPPF 130 (216)
Q Consensus 117 ~~~~~D~vi~npp~ 130 (216)
.-+.+|+||.+.-.
T Consensus 84 ~~~~id~vi~~Ag~ 97 (263)
T PRK07814 84 AFGRLDIVVNNVGG 97 (263)
T ss_pred HcCCCCEEEECCCC
Confidence 01368999987654
No 458
>PRK05993 short chain dehydrogenase; Provisional
Probab=71.26 E-value=41 Score=27.10 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=44.4
Q ss_pred CCEEEEecCCCCHhHHHH----hHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc---ccc----cc
Q psy17460 50 GKTVLDLGCGSGILTFGS----ILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD---SSV----FK 118 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~----~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~----~~ 118 (216)
+++||-.|++ |.++..+ ++.|. +|++++.+++.++.... . .++++.+|+.+.+-. ... ..
T Consensus 4 ~k~vlItGas-ggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~----~---~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGCS-SGIGAYCARALQSDGW-RVFATCRKEEDVAALEA----E---GLEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----C---CceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5678888864 5554443 34454 89999998876654332 1 467888898332211 010 11
Q ss_pred CcccEEEEcCCCCC
Q psy17460 119 QKVDTVIMNPPFGT 132 (216)
Q Consensus 119 ~~~D~vi~npp~~~ 132 (216)
+..|++|.|..+..
T Consensus 75 g~id~li~~Ag~~~ 88 (277)
T PRK05993 75 GRLDALFNNGAYGQ 88 (277)
T ss_pred CCccEEEECCCcCC
Confidence 46899999875543
No 459
>PRK07454 short chain dehydrogenase; Provisional
Probab=71.14 E-value=33 Score=26.79 Aligned_cols=78 Identities=12% Similarity=0.009 Sum_probs=48.4
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc--c------
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS--V------ 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~------ 116 (216)
..+++|-.|+ +|.++.. +++.|. +|++++.+++........+...+. ++.++.+|+ .+...- .
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~--~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGV-KAAAYSIDL--SNPEAIAPGIAELLE 79 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCC-cEEEEEccC--CCHHHHHHHHHHHHH
Confidence 4567888885 5555444 444555 899999998766555444433222 688899999 543210 0
Q ss_pred ccCcccEEEEcCCCC
Q psy17460 117 FKQKVDTVIMNPPFG 131 (216)
Q Consensus 117 ~~~~~D~vi~npp~~ 131 (216)
.-...|.+|.+.-..
T Consensus 80 ~~~~id~lv~~ag~~ 94 (241)
T PRK07454 80 QFGCPDVLINNAGMA 94 (241)
T ss_pred HcCCCCEEEECCCcc
Confidence 013589999887544
No 460
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.03 E-value=9.7 Score=32.01 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCCCEEEEecCCC-CHhHHHHhH--cCCCEEEEEeCChHHHHHHHH
Q psy17460 48 IDGKTVLDLGCGS-GILTFGSIL--LGADFCFALECDKEILDIFID 90 (216)
Q Consensus 48 ~~~~~vlD~g~Gt-G~~~~~~~~--~~~~~v~~iD~~~~~~~~~~~ 90 (216)
.+|++||-.|||. |.++..+++ .+..+|+++|.+++-++.++.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4688999999752 323344444 245689999999988887764
No 461
>PRK08303 short chain dehydrogenase; Provisional
Probab=70.36 E-value=29 Score=28.79 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=45.9
Q ss_pred CCCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCCh----------HHHHHHHHhhhHhCCCceEEEEeccccccccc
Q psy17460 48 IDGKTVLDLGCGSGIL---TFGSILLGADFCFALECDK----------EILDIFIDNKNEFEITNCDAILFEINEKSLDS 114 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~----------~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 114 (216)
..++++|-.|++.|.- +..++..|. +|+.++.+. +.++.+...+...+. ++.++.+|+ .+...
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv--~~~~~ 81 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGG-RGIAVQVDH--LVPEQ 81 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCC-ceEEEEcCC--CCHHH
Confidence 4678999999876652 233445565 888888763 333333333433332 567888998 44211
Q ss_pred --c------cccCcccEEEEcC
Q psy17460 115 --S------VFKQKVDTVIMNP 128 (216)
Q Consensus 115 --~------~~~~~~D~vi~np 128 (216)
. ..-+..|++|.|.
T Consensus 82 v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 82 VRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHcCCccEEEECC
Confidence 0 0114689999987
No 462
>PRK06057 short chain dehydrogenase; Provisional
Probab=70.25 E-value=21 Score=28.29 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=43.8
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
.++++||-.|++. .++.. +++.|. +|+.++.+++..+.....+ ...++.+|+.+.+-.... .
T Consensus 5 ~~~~~vlItGasg-gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 5 LAGRVAVITGGGS-GIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEV------GGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHc------CCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 3678999999854 44433 444554 8999999876554433322 124677787322211100 1
Q ss_pred cCcccEEEEcCCCC
Q psy17460 118 KQKVDTVIMNPPFG 131 (216)
Q Consensus 118 ~~~~D~vi~npp~~ 131 (216)
.+.+|.|+.+..+.
T Consensus 77 ~~~id~vi~~ag~~ 90 (255)
T PRK06057 77 YGSVDIAFNNAGIS 90 (255)
T ss_pred cCCCCEEEECCCcC
Confidence 13689999887543
No 463
>PRK06500 short chain dehydrogenase; Provisional
Probab=69.83 E-value=27 Score=27.39 Aligned_cols=76 Identities=18% Similarity=0.101 Sum_probs=45.3
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--------cc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--------SV 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--------~~ 116 (216)
+++++|-.|++. .++.. +++.|. +|++++.+++.++.....+ +. ++.++.+|. .+... ..
T Consensus 5 ~~k~vlItGasg-~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~--~~~~~~~~~~~~~~~ 76 (249)
T PRK06500 5 QGKTALITGGTS-GIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---GE-SALVIRADA--GDVAAQKALAQALAE 76 (249)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---CC-ceEEEEecC--CCHHHHHHHHHHHHH
Confidence 567788877654 33333 444555 8999998876554433322 22 577888888 44221 00
Q ss_pred ccCcccEEEEcCCCCC
Q psy17460 117 FKQKVDTVIMNPPFGT 132 (216)
Q Consensus 117 ~~~~~D~vi~npp~~~ 132 (216)
..+.+|.+|.+..+..
T Consensus 77 ~~~~id~vi~~ag~~~ 92 (249)
T PRK06500 77 AFGRLDAVFINAGVAK 92 (249)
T ss_pred HhCCCCEEEECCCCCC
Confidence 1146899998876543
No 464
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.74 E-value=37 Score=26.58 Aligned_cols=78 Identities=15% Similarity=0.094 Sum_probs=48.2
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
+++++|-.|++. .++.. +++.|. +|++++.+++..+.+...+.. +. ++.++.+|+.+.+-.... .-
T Consensus 4 ~~~~vlItGasg-~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 4 EGKVAIVTGASS-GIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-GG-RAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CCcEEEEECCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-CC-eEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 567788887653 33333 444555 799999998776665555443 22 688999998332221110 11
Q ss_pred CcccEEEEcCCC
Q psy17460 119 QKVDTVIMNPPF 130 (216)
Q Consensus 119 ~~~D~vi~npp~ 130 (216)
..+|.||.+...
T Consensus 80 ~~~d~vi~~ag~ 91 (251)
T PRK07231 80 GSVDILVNNAGT 91 (251)
T ss_pred CCCCEEEECCCC
Confidence 368999988765
No 465
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=69.72 E-value=35 Score=26.91 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=48.6
Q ss_pred CCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460 49 DGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ 119 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~ 119 (216)
.++++|-.|++.|.- +..+++.|. +|+.++.+++..+.....+...+. ++.++.+|+.+.+-... ..-+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 677888888654441 233444555 899999988776665555543332 57788888833221110 0114
Q ss_pred cccEEEEcCCC
Q psy17460 120 KVDTVIMNPPF 130 (216)
Q Consensus 120 ~~D~vi~npp~ 130 (216)
.+|.++.|...
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 68999988754
No 466
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=69.68 E-value=20 Score=30.89 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=25.0
Q ss_pred CCCEEEEecCC-CCHhH-HHHhHcCCCEEEEEeCC
Q psy17460 49 DGKTVLDLGCG-SGILT-FGSILLGADFCFALECD 81 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~~-~~~~~~~~~~v~~iD~~ 81 (216)
...+|+-+||| .|+.. ..++..|..+++.+|-+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 56789999999 45543 44667777899999976
No 467
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.65 E-value=34 Score=26.62 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=48.3
Q ss_pred CCCEEEEecCCCCHhHHHHh----HcCCCEEEEE-eCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 49 DGKTVLDLGCGSGILTFGSI----LLGADFCFAL-ECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~i-D~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
.++++|-.|+ +|.++..++ ..|. +++.+ +.+++..+.....+...+. ++.++.+|+.+.+-.... .
T Consensus 4 ~~~~ilI~Ga-sg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 4 MGKVAIVTGA-SGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGG-DAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567887775 566655544 3454 78877 8887766655555443332 688999999332211110 0
Q ss_pred cCcccEEEEcCCCC
Q psy17460 118 KQKVDTVIMNPPFG 131 (216)
Q Consensus 118 ~~~~D~vi~npp~~ 131 (216)
-..+|.||.++...
T Consensus 81 ~~~id~vi~~ag~~ 94 (247)
T PRK05565 81 FGKIDILVNNAGIS 94 (247)
T ss_pred hCCCCEEEECCCcC
Confidence 02689999887665
No 468
>PRK08265 short chain dehydrogenase; Provisional
Probab=69.04 E-value=30 Score=27.59 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=46.4
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccccc------cc
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------FK 118 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~ 118 (216)
.+++++|-.|++.|. ++..+++.|. +|+.++.+++..+.....+ +. ++.++.+|+.+.+-.... .-
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GE-RARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CC-eeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 357788888865443 2233445565 8999999876544433322 21 678899999332211110 01
Q ss_pred CcccEEEEcCCC
Q psy17460 119 QKVDTVIMNPPF 130 (216)
Q Consensus 119 ~~~D~vi~npp~ 130 (216)
...|.+|.|...
T Consensus 79 g~id~lv~~ag~ 90 (261)
T PRK08265 79 GRVDILVNLACT 90 (261)
T ss_pred CCCCEEEECCCC
Confidence 468999988654
No 469
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=69.04 E-value=28 Score=27.96 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=39.6
Q ss_pred EEEEecCC-CCHhH-HHHhHcCCCEEEEEeCChH-------------------HHHHHHHhhhHhCCC-ceEEEEecccc
Q psy17460 52 TVLDLGCG-SGILT-FGSILLGADFCFALECDKE-------------------ILDIFIDNKNEFEIT-NCDAILFEINE 109 (216)
Q Consensus 52 ~vlD~g~G-tG~~~-~~~~~~~~~~v~~iD~~~~-------------------~~~~~~~~~~~~~~~-~v~~~~~d~~~ 109 (216)
+||-+||| .|+.. ..++..|.++++.+|.|.- -.+.+.++++...-. +++.+..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 36777877 55543 3355667788988885521 123334444332211 56666666621
Q ss_pred cccccccccCcccEEEEc
Q psy17460 110 KSLDSSVFKQKVDTVIMN 127 (216)
Q Consensus 110 ~~~~~~~~~~~~D~vi~n 127 (216)
.+......-..||+|+..
T Consensus 81 ~~~~~~~f~~~~DvVi~a 98 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNA 98 (234)
T ss_pred hhhchHHHHhCCCEEEEC
Confidence 111000011579999974
No 470
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.99 E-value=20 Score=32.06 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=41.1
Q ss_pred CCCCEEEEecCCCCHh-HHH-HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460 48 IDGKTVLDLGCGSGIL-TFG-SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI 125 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~-~~~-~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi 125 (216)
..+++|+-+|.|--.+ +.. +...|. .|++.|..+...+. +...+ +.++.++. ..... ..+|+||
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~----l~~~g---~~~~~~~~--~~~~l----~~~D~VV 75 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRP----HAERG---VATVSTSD--AVQQI----ADYALVV 75 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH----HHhCC---CEEEcCcc--hHhHh----hcCCEEE
Confidence 3678999999984443 333 334454 89999987654332 22223 45554433 11111 4679999
Q ss_pred EcCCCC
Q psy17460 126 MNPPFG 131 (216)
Q Consensus 126 ~npp~~ 131 (216)
..|...
T Consensus 76 ~SpGi~ 81 (488)
T PRK03369 76 TSPGFR 81 (488)
T ss_pred ECCCCC
Confidence 988654
No 471
>PRK12743 oxidoreductase; Provisional
Probab=68.95 E-value=31 Score=27.35 Aligned_cols=79 Identities=6% Similarity=-0.033 Sum_probs=44.9
Q ss_pred CCEEEEecCCCCHhHHHHh----HcCCCEEEEEe-CChHHHHHHHHhhhHhCCCceEEEEecccccccccc------ccc
Q psy17460 50 GKTVLDLGCGSGILTFGSI----LLGADFCFALE-CDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFK 118 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD-~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~ 118 (216)
+++||-.|++ |.++..++ +.|. +|+.+. .+....+.+...+...+. ++.++.+|+.+.+-... ..-
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGV-RAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4578888865 44554444 4454 676664 455555544444444443 68899999833221100 011
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
.+.|.+|.+.-+.
T Consensus 79 ~~id~li~~ag~~ 91 (256)
T PRK12743 79 GRIDVLVNNAGAM 91 (256)
T ss_pred CCCCEEEECCCCC
Confidence 4689999987654
No 472
>PRK08703 short chain dehydrogenase; Provisional
Probab=68.60 E-value=41 Score=26.28 Aligned_cols=79 Identities=22% Similarity=0.192 Sum_probs=46.4
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc---------
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--------- 114 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--------- 114 (216)
.++++++-.|+ +|.++.. ++..|. +|++++.+++..+.....+...+-..+.++..|+ .+...
T Consensus 4 l~~k~vlItG~-sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~--~~~~~~~~~~~~~~ 79 (239)
T PRK08703 4 LSDKTILVTGA-SQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDL--MSAEEKEFEQFAAT 79 (239)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeee--cccchHHHHHHHHH
Confidence 36778999996 4444444 444454 8999999987666555554333322456677776 32110
Q ss_pred --ccccCcccEEEEcCCC
Q psy17460 115 --SVFKQKVDTVIMNPPF 130 (216)
Q Consensus 115 --~~~~~~~D~vi~npp~ 130 (216)
......+|.|+.+.-.
T Consensus 80 i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 80 IAEATQGKLDGIVHCAGY 97 (239)
T ss_pred HHHHhCCCCCEEEEeccc
Confidence 0011367999977653
No 473
>PRK06720 hypothetical protein; Provisional
Probab=68.57 E-value=48 Score=24.94 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=49.8
Q ss_pred CCCEEEEecCCCCH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccccc--c------cc
Q psy17460 49 DGKTVLDLGCGSGI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDS--S------VF 117 (216)
Q Consensus 49 ~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~------~~ 117 (216)
++++++-.|.+.|. ++..++..|. +|+.+|.+++..+.....+...+. .+.++..|. .+... . ..
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl--~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGG-EALFVSYDM--EKQGDWQRVISITLNA 90 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccC--CCHHHHHHHHHHHHHH
Confidence 57789998887655 2333555564 899999988766555444443332 567788888 43221 0 01
Q ss_pred cCcccEEEEcCCCCC
Q psy17460 118 KQKVDTVIMNPPFGT 132 (216)
Q Consensus 118 ~~~~D~vi~npp~~~ 132 (216)
-+..|.++.|.....
T Consensus 91 ~G~iDilVnnAG~~~ 105 (169)
T PRK06720 91 FSRIDMLFQNAGLYK 105 (169)
T ss_pred cCCCCEEEECCCcCC
Confidence 146899998865443
No 474
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=68.37 E-value=35 Score=24.63 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=20.5
Q ss_pred EEEEecCC-CCHh-HHHHhHcCCCEEEEEeCC
Q psy17460 52 TVLDLGCG-SGIL-TFGSILLGADFCFALECD 81 (216)
Q Consensus 52 ~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~ 81 (216)
+|+=+||| .|+. +..++..|..+++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 36778887 5553 344666677789999866
No 475
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=68.29 E-value=42 Score=27.19 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEeccccccc-----c-cccccC
Q psy17460 49 DGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSL-----D-SSVFKQ 119 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-----~-~~~~~~ 119 (216)
+++.++-.|+++|.- +..+++.|. +|+...-..+.++.....+.. + .+..+..|+.+.+- . ....-+
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~-~--~~~~~~~DVtD~~~~~~~i~~~~~~~g 80 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGA-G--AALALALDVTDRAAVEAAIEALPEEFG 80 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhcc-C--ceEEEeeccCCHHHHHHHHHHHHHhhC
Confidence 568899999998873 455666776 999999999988877776654 2 67888888833321 0 011116
Q ss_pred cccEEEEcCC
Q psy17460 120 KVDTVIMNPP 129 (216)
Q Consensus 120 ~~D~vi~npp 129 (216)
.+|+++.|.=
T Consensus 81 ~iDiLvNNAG 90 (246)
T COG4221 81 RIDILVNNAG 90 (246)
T ss_pred cccEEEecCC
Confidence 7999998853
No 476
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=68.10 E-value=13 Score=33.17 Aligned_cols=48 Identities=13% Similarity=0.022 Sum_probs=30.5
Q ss_pred CccccCCHHHHHHHHHHHHhhcC--CCC--CCEEEEecCCCCHhHHHHhHcC
Q psy17460 24 LEQYHTPPHLAATILHTIQNNYN--DID--GKTVLDLGCGSGILTFGSILLG 71 (216)
Q Consensus 24 ~~~~~t~~~~~~~~~~~~~~~~~--~~~--~~~vlD~g~GtG~~~~~~~~~~ 71 (216)
.+.|......+...++.....+. ... =..|+|..+|.|.++.++....
T Consensus 336 ~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~ 387 (506)
T PF03141_consen 336 PEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDP 387 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCC
Confidence 33444444566666655553322 222 2479999999999999887763
No 477
>PRK06914 short chain dehydrogenase; Provisional
Probab=68.05 E-value=39 Score=27.11 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=46.5
Q ss_pred CCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCC-ceEEEEeccccccccc--c---cccC
Q psy17460 50 GKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEIT-NCDAILFEINEKSLDS--S---VFKQ 119 (216)
Q Consensus 50 ~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~--~---~~~~ 119 (216)
++.+|-.|++.| ++.. ++..|. +|++++.+++..+.........+.. ++.++.+|+.+.+-.. . ..-+
T Consensus 3 ~k~~lItGasg~-iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGASSG-FGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECCCch-HHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 567888885443 3333 444554 8999998887666554444333322 6889999993322110 0 0114
Q ss_pred cccEEEEcCCC
Q psy17460 120 KVDTVIMNPPF 130 (216)
Q Consensus 120 ~~D~vi~npp~ 130 (216)
++|.|+.++..
T Consensus 81 ~id~vv~~ag~ 91 (280)
T PRK06914 81 RIDLLVNNAGY 91 (280)
T ss_pred CeeEEEECCcc
Confidence 67999988654
No 478
>PRK07825 short chain dehydrogenase; Provisional
Probab=67.80 E-value=41 Score=26.95 Aligned_cols=76 Identities=14% Similarity=0.074 Sum_probs=45.6
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccc------ccccc
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLD------SSVFK 118 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~ 118 (216)
.++++|-.|++.| ++.. ++..|. +|+.++.+++.++.....+. ++.++.+|+.+.+-. ....-
T Consensus 4 ~~~~ilVtGasgg-iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 4 RGKVVAITGGARG-IGLATARALAALGA-RVAIGDLDEALAKETAAELG-----LVVGGPLDVTDPASFAAFLDAVEADL 76 (273)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc-----cceEEEccCCCHHHHHHHHHHHHHHc
Confidence 5678888887654 4333 444555 78899998877655433332 467888898332211 00011
Q ss_pred CcccEEEEcCCCC
Q psy17460 119 QKVDTVIMNPPFG 131 (216)
Q Consensus 119 ~~~D~vi~npp~~ 131 (216)
+..|++|.|.-..
T Consensus 77 ~~id~li~~ag~~ 89 (273)
T PRK07825 77 GPIDVLVNNAGVM 89 (273)
T ss_pred CCCCEEEECCCcC
Confidence 4689999886543
No 479
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=67.71 E-value=23 Score=28.50 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=23.8
Q ss_pred CCCEEEEecCC-CCHhH-HHHhHcCCCEEEEEeCC
Q psy17460 49 DGKTVLDLGCG-SGILT-FGSILLGADFCFALECD 81 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~~-~~~~~~~~~~v~~iD~~ 81 (216)
...+|+-+||| .|+.. ..++..|-.+++.+|-+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 56789999997 55543 44666677788888754
No 480
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=67.66 E-value=27 Score=26.11 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCC-CEEEEEeCC
Q psy17460 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECD 81 (216)
Q Consensus 37 ~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~-~~v~~iD~~ 81 (216)
.++++.......+| -|+|+|-|.|..--.+.+..+ ..|+++|-.
T Consensus 17 ~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 17 CLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 44555555454555 599999999999888888755 689999964
No 481
>PRK09135 pteridine reductase; Provisional
Probab=67.64 E-value=30 Score=26.96 Aligned_cols=80 Identities=11% Similarity=0.029 Sum_probs=44.3
Q ss_pred CCCEEEEecCCCCHhHHHHh----HcCCCEEEEEeCC-hHHHHHHHHhhhHhCCCceEEEEeccccccccccc------c
Q psy17460 49 DGKTVLDLGCGSGILTFGSI----LLGADFCFALECD-KEILDIFIDNKNEFEITNCDAILFEINEKSLDSSV------F 117 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~----~~~~~~v~~iD~~-~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~ 117 (216)
.+++||-.|+ +|.++..++ +.|. +|++++.+ +...+.....+....-.++.++.+|+.+.+-.... .
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGY-RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4578999996 455554444 4454 89999875 33333333333222112578899999332211110 0
Q ss_pred cCcccEEEEcCCC
Q psy17460 118 KQKVDTVIMNPPF 130 (216)
Q Consensus 118 ~~~~D~vi~npp~ 130 (216)
-..+|.||.+...
T Consensus 83 ~~~~d~vi~~ag~ 95 (249)
T PRK09135 83 FGRLDALVNNASS 95 (249)
T ss_pred cCCCCEEEECCCC
Confidence 1357999988754
No 482
>PRK07024 short chain dehydrogenase; Provisional
Probab=67.59 E-value=30 Score=27.48 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=45.5
Q ss_pred CEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccCc
Q psy17460 51 KTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQK 120 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~ 120 (216)
++||-.|++ |.++.. +++.|. +|+.++.+++.++.....+...+ ++.++.+|+.+.+-... ...+.
T Consensus 3 ~~vlItGas-~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 3 LKVFITGAS-SGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CEEEEEcCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 467777764 444433 444555 89999998877665544433222 68889999943221111 01135
Q ss_pred ccEEEEcCCC
Q psy17460 121 VDTVIMNPPF 130 (216)
Q Consensus 121 ~D~vi~npp~ 130 (216)
+|+++.|.-.
T Consensus 79 id~lv~~ag~ 88 (257)
T PRK07024 79 PDVVIANAGI 88 (257)
T ss_pred CCEEEECCCc
Confidence 7999988644
No 483
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=67.38 E-value=8.8 Score=26.09 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=33.6
Q ss_pred ecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEEcCCC
Q psy17460 56 LGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130 (216)
Q Consensus 56 ~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~npp~ 130 (216)
+.||+|..+..+++ .+++.+...++ .+++...++ .+..... ..+|+|++-|=+
T Consensus 4 ~~Cg~G~sTS~~~~-----------------ki~~~~~~~~~-~~~v~~~~~--~~~~~~~--~~~Diil~~Pqv 56 (96)
T cd05564 4 LVCSAGMSTSILVK-----------------KMKKAAEKRGI-DAEIEAVPE--SELEEYI--DDADVVLLGPQV 56 (96)
T ss_pred EEcCCCchHHHHHH-----------------HHHHHHHHCCC-ceEEEEecH--HHHHHhc--CCCCEEEEChhH
Confidence 56888875543333 33555566666 578888888 5543222 679999997743
No 484
>KOG2539|consensus
Probab=67.28 E-value=18 Score=32.07 Aligned_cols=128 Identities=11% Similarity=0.008 Sum_probs=69.4
Q ss_pred CCCCCCEEEEecCCCCHhHHHHh--HcC-CCEEEEEeCChHHHHHHHHhhhHh-CCCceEEEEecccccccccccccCcc
Q psy17460 46 NDIDGKTVLDLGCGSGILTFGSI--LLG-ADFCFALECDKEILDIFIDNKNEF-EITNCDAILFEINEKSLDSSVFKQKV 121 (216)
Q Consensus 46 ~~~~~~~vlD~g~GtG~~~~~~~--~~~-~~~v~~iD~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~ 121 (216)
+....+.+.|+|.|.|.-...+. +.. ...+..||.+..|......++... ....+.+..-.+.+.-++. +..+.|
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi-~~~~~y 275 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPI-DIKNGY 275 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCC-Ccccce
Confidence 44567789999998877654433 333 257889999999999988887651 1101111111221112222 222569
Q ss_pred cEEEEcCCCCCC-C---CCCC-HHHHHHHhhcCCceEEEeeCc-chHHHHHHHHHhcCc
Q psy17460 122 DTVIMNPPFGTR-N---CGID-LAFVQYAADISKVVYSLHKTS-TRESILKKIQAFKNV 174 (216)
Q Consensus 122 D~vi~npp~~~~-~---~~~~-~~~~~~~l~~~~~ly~~~~~~-~~~~~~~~~~~~l~~ 174 (216)
|+|+|..-.+.. + +... ..+-.++...+..+..+-... -.-+++.+++..+.+
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~eaR~~~l~ 334 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEARQNLLD 334 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHHHHhccc
Confidence 999986554444 1 1111 122223333333344444433 366777777776555
No 485
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=67.25 E-value=32 Score=27.41 Aligned_cols=78 Identities=21% Similarity=0.098 Sum_probs=47.0
Q ss_pred CCCEEEEecCCCCHh---HHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cccC
Q psy17460 49 DGKTVLDLGCGSGIL---TFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VFKQ 119 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~---~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~ 119 (216)
+++++|-.|++.|.- +..++..|. +|+.++.+++.++...... + .++.++.+|+.+.+-... ..-+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---G-DHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 678899999765442 233444554 8999999887665544332 2 157788899832221110 0114
Q ss_pred cccEEEEcCCCC
Q psy17460 120 KVDTVIMNPPFG 131 (216)
Q Consensus 120 ~~D~vi~npp~~ 131 (216)
.+|++|.|..+.
T Consensus 80 ~id~li~~ag~~ 91 (263)
T PRK06200 80 KLDCFVGNAGIW 91 (263)
T ss_pred CCCEEEECCCCc
Confidence 689999887653
No 486
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=67.10 E-value=18 Score=31.15 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=43.7
Q ss_pred CCCCEEEEecCCCCHhHHHHhH----cCCCEEEEEeCChHHHHH---HHHhhhHhCCCceEEEEecccccccccccccC-
Q psy17460 48 IDGKTVLDLGCGSGILTFGSIL----LGADFCFALECDKEILDI---FIDNKNEFEITNCDAILFEINEKSLDSSVFKQ- 119 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~~~~----~~~~~v~~iD~~~~~~~~---~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~- 119 (216)
..+.+||-+| |+|.++..+++ .| .+|++++.++..... ...... ...+++++.+|+.+.+-......+
T Consensus 58 ~~~~kVLVtG-atG~IG~~l~~~Ll~~G-~~V~~l~R~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~ 133 (390)
T PLN02657 58 PKDVTVLVVG-ATGYIGKFVVRELVRRG-YNVVAVAREKSGIRGKNGKEDTKK--ELPGAEVVFGDVTDADSLRKVLFSE 133 (390)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCC-CEEEEEEechhhccccchhhHHhh--hcCCceEEEeeCCCHHHHHHHHHHh
Confidence 3567888887 67887766554 34 489999887643221 111111 112688999999332211111112
Q ss_pred --cccEEEEcC
Q psy17460 120 --KVDTVIMNP 128 (216)
Q Consensus 120 --~~D~vi~np 128 (216)
.+|+||.+.
T Consensus 134 ~~~~D~Vi~~a 144 (390)
T PLN02657 134 GDPVDVVVSCL 144 (390)
T ss_pred CCCCcEEEECC
Confidence 589999753
No 487
>PRK05875 short chain dehydrogenase; Provisional
Probab=67.00 E-value=32 Score=27.59 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=46.2
Q ss_pred CCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhHhC-CCceEEEEeccccccccc--cc-----
Q psy17460 49 DGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNEFE-ITNCDAILFEINEKSLDS--SV----- 116 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~--~~----- 116 (216)
+++++|-.|++ |.++.. ++..|. +|++++.+++..+.....+.... ..++.++.+|+ .+... ..
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl--~~~~~~~~~~~~~~ 81 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADV--TDEDQVARAVDAAT 81 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCC--CCHHHHHHHHHHHH
Confidence 56789988865 334443 334455 89999988766655444433221 12678889998 44221 10
Q ss_pred -ccCcccEEEEcCC
Q psy17460 117 -FKQKVDTVIMNPP 129 (216)
Q Consensus 117 -~~~~~D~vi~npp 129 (216)
....+|.+|.+.-
T Consensus 82 ~~~~~~d~li~~ag 95 (276)
T PRK05875 82 AWHGRLHGVVHCAG 95 (276)
T ss_pred HHcCCCCEEEECCC
Confidence 0136899998764
No 488
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=66.78 E-value=51 Score=26.22 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=45.5
Q ss_pred CCCCEEEEecCCCCH---hHHHHhHcCCCEEEEEe-CChHHHHHHHHhhhH-hCCCceEEEEecccccccc--c------
Q psy17460 48 IDGKTVLDLGCGSGI---LTFGSILLGADFCFALE-CDKEILDIFIDNKNE-FEITNCDAILFEINEKSLD--S------ 114 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~---~~~~~~~~~~~~v~~iD-~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~--~------ 114 (216)
.+++++|-.|++.|. ++..+++.|. +|+.+. .+++..+.....+.. .+. ++.++.+|+ .+.. .
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~--~~~~~~~~~~~~~ 81 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGI-KAKAYPLNI--LEPETYKELFKKI 81 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCC-ceEEEEcCC--CCHHHHHHHHHHH
Confidence 467889988877664 2344555665 677664 455554444333322 232 678999999 4421 0
Q ss_pred ccccCcccEEEEcCC
Q psy17460 115 SVFKQKVDTVIMNPP 129 (216)
Q Consensus 115 ~~~~~~~D~vi~npp 129 (216)
...-+.+|+++.|..
T Consensus 82 ~~~~g~id~lv~nAg 96 (260)
T PRK08416 82 DEDFDRVDFFISNAI 96 (260)
T ss_pred HHhcCCccEEEECcc
Confidence 001146899998863
No 489
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=66.67 E-value=4.9 Score=33.10 Aligned_cols=49 Identities=10% Similarity=0.230 Sum_probs=35.2
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCCCHhHHHHhHcCCCEEEEEeCChHHHHHHH
Q psy17460 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFI 89 (216)
Q Consensus 37 ~~~~~~~~~~~~~~~~vlD~g~GtG~~~~~~~~~~~~~v~~iD~~~~~~~~~~ 89 (216)
++..+...++. +...+|++||.|++.+.+... .+.+.-|++++++..-+
T Consensus 15 l~~~i~~~lP~--~~~y~EPF~GggaV~i~~~~~--~~~i~~Din~~Lvn~y~ 63 (274)
T COG0338 15 LLDQIIPHLPE--GVSYIEPFVGGGAVFINLAAK--KKYILNDINPDLVNLYN 63 (274)
T ss_pred HHHHHHHhCCC--CceeeCCccCcceeeeehhhh--hhhhHhcCCHHHHHHHH
Confidence 34444444332 239999999999998877664 47899999999986533
No 490
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=66.26 E-value=29 Score=27.80 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=25.5
Q ss_pred CCCEEEEecCC-CCHhHH-HHhHcCCCEEEEEeCC
Q psy17460 49 DGKTVLDLGCG-SGILTF-GSILLGADFCFALECD 81 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~~~-~~~~~~~~~v~~iD~~ 81 (216)
.+.+|+-+||| .|+... .+++.|-.+++-+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 56689999998 777654 4677777899999965
No 491
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=65.82 E-value=19 Score=31.86 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=47.1
Q ss_pred CCCEEEEecCC-CCHhHHH-HhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEEE
Q psy17460 49 DGKTVLDLGCG-SGILTFG-SILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIM 126 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~~~~-~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi~ 126 (216)
.+++|+-+|-| ||..+.. +.+.| ..|++.|.++........... ..++++..|.- .. ... ..+|+|+.
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~~~~~~~~~~---~~~i~~~~g~~--~~-~~~---~~~d~vV~ 75 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAPEGLAAQPLL---LEGIEVELGSH--DD-EDL---AEFDLVVK 75 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCccchhhhhhh---ccCceeecCcc--ch-hcc---ccCCEEEE
Confidence 47899999998 5554444 55556 499999988866222222111 11677777766 33 111 68999999
Q ss_pred cCCCCCC
Q psy17460 127 NPPFGTR 133 (216)
Q Consensus 127 npp~~~~ 133 (216)
+|-....
T Consensus 76 SPGi~~~ 82 (448)
T COG0771 76 SPGIPPT 82 (448)
T ss_pred CCCCCCC
Confidence 9865443
No 492
>PRK08223 hypothetical protein; Validated
Probab=65.72 E-value=31 Score=28.67 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=25.8
Q ss_pred CCCEEEEecCC-CCHh-HHHHhHcCCCEEEEEeCC
Q psy17460 49 DGKTVLDLGCG-SGIL-TFGSILLGADFCFALECD 81 (216)
Q Consensus 49 ~~~~vlD~g~G-tG~~-~~~~~~~~~~~v~~iD~~ 81 (216)
...+|+-+||| .|+. +..++..|-.++.-+|-|
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 56789999998 5664 455777787889988865
No 493
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.19 E-value=47 Score=26.84 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=44.5
Q ss_pred CCCEEEEecCCC--CH---hHHHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cc
Q psy17460 49 DGKTVLDLGCGS--GI---LTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VF 117 (216)
Q Consensus 49 ~~~~vlD~g~Gt--G~---~~~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~ 117 (216)
+++++|-.|++. |. ++..+++.|. +|+.++.+....+..+......+ ...++.+|+.+.+-... ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g--~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG--SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC--CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 678999999875 32 3344556665 78888876543333333222223 23467888833221100 01
Q ss_pred cCcccEEEEcCCC
Q psy17460 118 KQKVDTVIMNPPF 130 (216)
Q Consensus 118 ~~~~D~vi~npp~ 130 (216)
-+.+|++|.|.-.
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 1578999988754
No 494
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.17 E-value=43 Score=26.59 Aligned_cols=79 Identities=9% Similarity=0.076 Sum_probs=45.2
Q ss_pred CCCCEEEEecCCC-CHhH----HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------c
Q psy17460 48 IDGKTVLDLGCGS-GILT----FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------V 116 (216)
Q Consensus 48 ~~~~~vlD~g~Gt-G~~~----~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~ 116 (216)
..++++|-.|+++ +.++ ..+++.|. +|+..+.+....+.+.+.. + .++.++.+|+.+.+-... .
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLV---D-EEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhc---c-CceeEEeCCCCCHHHHHHHHHHHHH
Confidence 3678999999873 3343 33555565 7888887754333322221 1 157788899932221100 0
Q ss_pred ccCcccEEEEcCCCC
Q psy17460 117 FKQKVDTVIMNPPFG 131 (216)
Q Consensus 117 ~~~~~D~vi~npp~~ 131 (216)
.-+.+|+++.|.-+.
T Consensus 80 ~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 80 RVGKIDGIVHAIAYA 94 (252)
T ss_pred HhCCCCEEEEccccc
Confidence 115689999887553
No 495
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.96 E-value=47 Score=26.94 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=44.6
Q ss_pred CCCEEEEecCCC-CHhH----HHHhHcCCCEEEEEeCChHHHHHHHHhhhHhCCCceEEEEecccccccccc------cc
Q psy17460 49 DGKTVLDLGCGS-GILT----FGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSS------VF 117 (216)
Q Consensus 49 ~~~~vlD~g~Gt-G~~~----~~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~ 117 (216)
.++++|-.|++. +.++ ..+++.|. +|+..+.+....+.+.......+. . .++.+|+.+.+-... ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999862 3333 33445565 888888875433333332222232 3 567889833321110 01
Q ss_pred cCcccEEEEcCCC
Q psy17460 118 KQKVDTVIMNPPF 130 (216)
Q Consensus 118 ~~~~D~vi~npp~ 130 (216)
-+.+|++|.|.-+
T Consensus 81 ~g~iDilVnnAG~ 93 (274)
T PRK08415 81 LGKIDFIVHSVAF 93 (274)
T ss_pred cCCCCEEEECCcc
Confidence 1578999988765
No 496
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=64.50 E-value=32 Score=28.24 Aligned_cols=78 Identities=15% Similarity=-0.025 Sum_probs=43.2
Q ss_pred CCCEEEEecCCCCHhHHHHhHc----CCCEEEEEeCChHHHHHHHHhhhHhC-CCceEEEEeccccccccc-ccccCccc
Q psy17460 49 DGKTVLDLGCGSGILTFGSILL----GADFCFALECDKEILDIFIDNKNEFE-ITNCDAILFEINEKSLDS-SVFKQKVD 122 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~~~~~~~----~~~~v~~iD~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~-~~~~~~~D 122 (216)
.+++||-.|+ +|.++..+++. |. +|++++.++.............+ .++++++.+|+ .+... ...-..+|
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~~~~d 78 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGY-TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANL--LEEGSFDSVVDGCE 78 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCC-EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccc--cCcchHHHHHcCCC
Confidence 4567887774 67777665543 43 78888776543222222111111 12689999999 54321 11114579
Q ss_pred EEEEcCCC
Q psy17460 123 TVIMNPPF 130 (216)
Q Consensus 123 ~vi~npp~ 130 (216)
.||-....
T Consensus 79 ~Vih~A~~ 86 (322)
T PLN02662 79 GVFHTASP 86 (322)
T ss_pred EEEEeCCc
Confidence 99876543
No 497
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=64.24 E-value=17 Score=27.78 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=36.0
Q ss_pred CEEEEecCCCCHhHHHHhHcC-CCEEEEEeCChHHHHHHHHhhhHhCC---CceEEEEeccc
Q psy17460 51 KTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEI---TNCDAILFEIN 108 (216)
Q Consensus 51 ~~vlD~g~GtG~~~~~~~~~~-~~~v~~iD~~~~~~~~~~~~~~~~~~---~~v~~~~~d~~ 108 (216)
..|+.+|||-=+....+.... ...++-+|. |++++.-++.+...+. .+.+++.+|+.
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 140 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLR 140 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TT
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEecccc
Confidence 489999999999888777753 456777777 6677766666655422 14668999994
No 498
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=64.19 E-value=34 Score=31.97 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=48.9
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChHHHHHHHHhhhH-hCCCceEEEEeccccccccccc------
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKEILDIFIDNKNE-FEITNCDAILFEINEKSLDSSV------ 116 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~------ 116 (216)
..++++|-.|++.| ++.. ++..|. +|+++|.+++..+.....+.. .+..++.++.+|+.+.+-....
T Consensus 412 l~gkvvLVTGasgg-IG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~ 489 (676)
T TIGR02632 412 LARRVAFVTGGAGG-IGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL 489 (676)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 45788888887544 4433 444555 899999998776655444432 1222567888998322211110
Q ss_pred ccCcccEEEEcCCCC
Q psy17460 117 FKQKVDTVIMNPPFG 131 (216)
Q Consensus 117 ~~~~~D~vi~npp~~ 131 (216)
.-+.+|++|.|.-..
T Consensus 490 ~~g~iDilV~nAG~~ 504 (676)
T TIGR02632 490 AYGGVDIVVNNAGIA 504 (676)
T ss_pred hcCCCcEEEECCCCC
Confidence 013689999887654
No 499
>PRK06128 oxidoreductase; Provisional
Probab=63.90 E-value=40 Score=27.65 Aligned_cols=81 Identities=14% Similarity=0.007 Sum_probs=44.5
Q ss_pred CCCCEEEEecCCCCHhHHH----HhHcCCCEEEEEeCChH--HHHHHHHhhhHhCCCceEEEEeccccccccccc-----
Q psy17460 48 IDGKTVLDLGCGSGILTFG----SILLGADFCFALECDKE--ILDIFIDNKNEFEITNCDAILFEINEKSLDSSV----- 116 (216)
Q Consensus 48 ~~~~~vlD~g~GtG~~~~~----~~~~~~~~v~~iD~~~~--~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~----- 116 (216)
..++++|-.|++.|. +.. ++..|. +|+.+..+.+ ..+.....+...+. ++.++.+|+.+.+.....
T Consensus 53 l~~k~vlITGas~gI-G~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 53 LQGRKALITGADSGI-GRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cCCCEEEEecCCCcH-HHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHH
Confidence 357889999865444 333 444555 6777665433 22233333333333 577889998332211000
Q ss_pred -ccCcccEEEEcCCCC
Q psy17460 117 -FKQKVDTVIMNPPFG 131 (216)
Q Consensus 117 -~~~~~D~vi~npp~~ 131 (216)
.-+..|++|.|..+.
T Consensus 130 ~~~g~iD~lV~nAg~~ 145 (300)
T PRK06128 130 KELGGLDILVNIAGKQ 145 (300)
T ss_pred HHhCCCCEEEECCccc
Confidence 114689999987653
No 500
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.88 E-value=62 Score=28.61 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=42.5
Q ss_pred CCCEEEEecCCCCHhH--HHHhHcCCCEEEEEeCChH-HHHHHHHhhhHhCCCceEEEEecccccccccccccCcccEEE
Q psy17460 49 DGKTVLDLGCGSGILT--FGSILLGADFCFALECDKE-ILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI 125 (216)
Q Consensus 49 ~~~~vlD~g~GtG~~~--~~~~~~~~~~v~~iD~~~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~D~vi 125 (216)
.+++|+-+|+|.-.+. ..++..|. +|+++|.++. ........+... +++++.++. .... ..+|+|+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~---gv~~~~~~~--~~~~-----~~~D~Vv 83 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEAL---GATVRLGPG--PTLP-----EDTDLVV 83 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHc---CCEEEECCC--cccc-----CCCCEEE
Confidence 5778999999844432 33445565 7999996653 223333334433 466777665 3311 4689999
Q ss_pred EcCCC
Q psy17460 126 MNPPF 130 (216)
Q Consensus 126 ~npp~ 130 (216)
..|-.
T Consensus 84 ~s~Gi 88 (480)
T PRK01438 84 TSPGW 88 (480)
T ss_pred ECCCc
Confidence 87643
Done!