RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17460
(216 letters)
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 160 bits (406), Expect = 6e-50
Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 17/208 (8%)
Query: 1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
+E LQ+L N K +LEQY T AA L I N+ +I G++V+D G G+
Sbjct: 5 GIKNDLEIRLQKLQ-QQGNFKNYLEQYPTDASTAAYFLIEIYNDG-NIGGRSVIDAGTGN 62
Query: 61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
GIL GS LLGA+ A + D + ++ N D K
Sbjct: 63 GILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS------------GK 110
Query: 121 VDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVI 180
DT IMNPPFG+ D AF+ A + S +YS+ R+ + ++ A +V
Sbjct: 111 YDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSARGDVF---RE 167
Query: 181 AEMKYDLNQSYKFHKKSLHDIEVDLLRI 208
++ + + Y+ H IE + +
Sbjct: 168 EKVYITVPRIYRHHSYDRARIEAVIFGV 195
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 150 bits (380), Expect = 6e-46
Identities = 77/210 (36%), Positives = 115/210 (54%), Gaps = 14/210 (6%)
Query: 1 MKLKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
+ K + L +L F NPKV LEQY TP + A+ +L + DI+GK V DLG G+
Sbjct: 3 TRKKELAIALSKLK-GFKNPKVWLEQYRTPGNAASELLWLAYS-LGDIEGKVVADLGAGT 60
Query: 61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
G+L++G++LLGA +E DKE +D+ I+N EF+ + +++E F +
Sbjct: 61 GVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSE-------FNSR 112
Query: 121 VDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLH--KTSTRESILKKIQAFKNVEQVD 178
VD VIMNPPFG++ D F+ A +IS VVYS+H K R I K ++++ V
Sbjct: 113 VDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKF--SWEHGFVVT 170
Query: 179 VIAEMKYDLNQSYKFHKKSLHDIEVDLLRI 208
K ++ + FH+K L I VD+ R
Sbjct: 171 HRLTTKIEIPLQFFFHRKKLERITVDIYRF 200
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 50.4 bits (120), Expect = 1e-07
Identities = 32/194 (16%), Positives = 64/194 (32%), Gaps = 13/194 (6%)
Query: 2 KLKHIEQYLQQLTFNFSNPKVHLEQ-YHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGS 60
+ + +++ + P +Q Y TP A ++ D++ K + LG
Sbjct: 126 AFADLLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHTRG--DLENKDIFVLGDDD 183
Query: 61 GILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQK 120
+ L+ D+ + NE + + F++ + D K
Sbjct: 184 LTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY--ALHK 241
Query: 121 VDTVIMNPPFGTRNCGIDLAFVQYAADISK-----VVYSLHKTSTRESILKKIQAFKNVE 175
DT I +PP I FV K + + + + ++IQ E
Sbjct: 242 FDTFITDPPETLE--AIRA-FVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNE 298
Query: 176 QVDVIAEMKYDLNQ 189
VI ++ + N+
Sbjct: 299 FNVVITDIIRNFNE 312
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 48.0 bits (115), Expect = 4e-07
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF 105
+ TV D+G GSGIL + LGA A + E + +N + I
Sbjct: 57 AMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEEN---AALNGIYDIAL 113
Query: 106 EINEKSLDSSVFKQKVDTVIMN 127
+ SL + V K D ++ N
Sbjct: 114 QKT--SLLADV-DGKFDLIVAN 132
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 48.1 bits (114), Expect = 6e-07
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEI---LDIFIDNKNEFEI 97
I N + K VLD+GCG+GIL+ + GA ++ + + +DI NK E I
Sbjct: 56 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTI 115
Query: 98 TNCDAILFEINEKSLDSSVFKQKVDTVI 125
T I K + + +KVD +I
Sbjct: 116 T-------LIKGKIEEVHLPVEKVDVII 136
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 46.9 bits (112), Expect = 1e-06
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF 105
+ G VLDLG GSG+L + LG ++ D +L N +
Sbjct: 117 HLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVDIDPMVLPQAEAN---AKRNGVRPRFL 172
Query: 106 EINEKSLDSSVFKQKVDTVIMN 127
E + L++++ D ++ N
Sbjct: 173 EGS---LEAALPFGPFDLLVAN 191
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 47.0 bits (111), Expect = 1e-06
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEI---LDIFIDNKNEFEI 97
I N + K VLD+GCG+GIL+ + GA ++ I ++ N +I
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKI 89
Query: 98 TNCDAILFEINEKSLDSSVFKQKVDTVI 125
T + K D + KVD +I
Sbjct: 90 TL-------LRGKLEDVHLPFPKVDIII 110
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 46.0 bits (109), Expect = 2e-06
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADF----CFALECDKEILDIFIDN---------KNEFE 96
+ DLG G+G + + A E +E+ + + E
Sbjct: 37 ACRIADLGAGAGAA---GMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93
Query: 97 ITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130
+ D + + +++ + + VIMNPP+
Sbjct: 94 VLEAD--VTLRAKARVEAGLPDEHFHHVIMNPPY 125
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 45.4 bits (107), Expect = 4e-06
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD---KEILDIFIDNKNEFEI 97
+ +N + K VLD+G G+GIL + GA +EC + I NK + +
Sbjct: 58 MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVV 117
Query: 98 TNCDAILFEINEKSLDSSVFKQKVDTVI 125
T I K + + +KVD +I
Sbjct: 118 T-------IIKGKVEEVELPVEKVDIII 138
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 44.6 bits (106), Expect = 4e-06
Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 36/146 (24%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADF---------CFALECDKEILDIFIDNKNEFEITNC 100
+LDLGCG G++ I L + A++ KE N + N
Sbjct: 53 DDDILDLGCGYGVI---GIALADEVKSTTMADINRRAIKLAKE-------NIKLNNLDNY 102
Query: 101 DAILFEINEKSLDSSVFKQKVDTVIMNPPF--GTRNCGIDLAFVQYAADISK------VV 152
D + + L +V +K + +I NPP G + ++ ++ K VV
Sbjct: 103 DIRVVHSD---LYENVKDRKYNKIITNPPIRAGKE---VLHRIIEEGKELLKDNGEIWVV 156
Query: 153 YSLHKTSTRESILKKIQA-FKNVEQV 177
+ + +S+ K ++ F NVE V
Sbjct: 157 IQTKQGA--KSLAKYMKDVFGNVETV 180
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 45.0 bits (106), Expect = 8e-06
Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 16/106 (15%)
Query: 26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEIL 85
+ TPP + ++ G VL+ C G F A EI
Sbjct: 20 RVETPPEVVDFMVSLA----EAPRGGRVLEPACAHGP--FLRAFREAHGTAYRFVGVEID 73
Query: 86 DIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131
+D E D +L+E E D ++ NPP+G
Sbjct: 74 PKALDLPPWAEGILADFLLWEPGEA----------FDLILGNPPYG 109
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 44.6 bits (105), Expect = 8e-06
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD---KEILDIFIDNKNEFEI 97
I N+ D K VLD+GCGSGIL+F + GA +A+E + + N I
Sbjct: 42 ILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRI 101
Query: 98 TNCDAILFEINEKSLDSSVFKQKVDTVI 125
I K + S+ ++VD +I
Sbjct: 102 VV-------IPGKVEEVSL-PEQVDIII 121
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 44.4 bits (105), Expect = 9e-06
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADF---CFALECDKEILDIFIDNKNEFEITNCDAILFE 106
++DL G+GI+ +LL +E + + D+ + ++ + + E
Sbjct: 50 KGKIIDLCSGNGII---PLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLED-QIEIIE 105
Query: 107 INEKSLDSSVFKQKVDTVIMNPPF 130
+ K + + K++ D V NPP+
Sbjct: 106 YDLKKITDLIPKERADIVTCNPPY 129
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 44.4 bits (105), Expect = 1e-05
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADF--CFALECDKEILDIFIDNKNEFEITNCDAILFEI 107
G VLD GSG + + +A + D++ L + + ++ + +
Sbjct: 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA 263
Query: 108 NEKSLDSSVFKQKVDTVIMNPPFGTR 133
F +VD ++ NPP G R
Sbjct: 264 ----RHLPRFFPEVDRILANPPHGLR 285
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 44.4 bits (104), Expect = 1e-05
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECD---KEILDIFIDNKNEFEI 97
I N+ D K VLD+GCGSGIL+F + GA +A+E + + N I
Sbjct: 150 ILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRI 209
Query: 98 TNCDAILFEINEKSLDSSVFKQKVDTVI 125
I K + S+ ++VD +I
Sbjct: 210 VV-------IPGKVEEVSL-PEQVDIII 229
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 44.4 bits (104), Expect = 1e-05
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEI---LDIFIDNKNEFEI 97
+ N + +GKTVLD+G GSGIL S GA +A+E K + N + +
Sbjct: 55 VFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIV 114
Query: 98 T--NCDAILFEINEK 110
+ EK
Sbjct: 115 EVIEGSVEDISLPEK 129
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 43.8 bits (103), Expect = 2e-05
Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 36/169 (21%)
Query: 47 DIDGKTVLDLGCGSGILTFGSILLGADFCF------ALECDKEILDIFIDNKNEFEITNC 100
+ G+ VLDLG G G LT +GA+ ++ ++ L+ K + ++
Sbjct: 231 GVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEAN-ALKAQALHSDV 289
Query: 101 DAILFEINEKSLDSSVFKQKVDTVIMNPPF---GTRNCGIDLAFVQYAADISK------- 150
D L E + + D ++ NPPF G + AFV AA +
Sbjct: 290 DEALTE-----------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
Query: 151 VVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLH 199
V K E +L++ F + + +Y + + K + H
Sbjct: 339 VSNPFLK---YEPLLEEK--FGAFQ---TLKVAEYKVLFAEKRGRHHHH 379
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 43.5 bits (102), Expect = 2e-05
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 21/116 (18%)
Query: 17 FSNPKVHLEQYHT-----PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLG 71
FS + E+Y + P I Y+D + K ++D+GCG G T
Sbjct: 4 FSASDFNSERYSSSRPSYPSDFYKMID-----EYHDGERKLLVDVGCGPGTATLQMAQEL 58
Query: 72 ADFC--FALECDKEILDIFIDNKN---------EFEITNCDAILFEINEKSLDSSV 116
F + ++ K F+I++ D F + +
Sbjct: 59 KPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 43.0 bits (100), Expect = 2e-05
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 48 IDGKTVLDLGCGSGILTFG-SILLGADFCFALECDKEILDIFIDNKNEFEITN 99
G+ VLDLGC G LT + G L+ D ++ N +
Sbjct: 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEE 97
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 41.8 bits (99), Expect = 4e-05
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF 105
I LD GSG L F ++ A LE DK + + N + ++ A +
Sbjct: 50 PYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVI 109
Query: 106 EIN-EKSLDSSVFKQKVDTVIMNPPFG 131
+ L + D V ++PPF
Sbjct: 110 NQSSLDFLKQPQNQPHFDVVFLDPPFH 136
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 41.8 bits (98), Expect = 6e-05
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 28/138 (20%)
Query: 25 EQYHTPPHL-AATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKE 83
+ + L AA H ++ D + KTVLDLGCG G + GA ++ +
Sbjct: 19 QMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSER 78
Query: 84 ILDI----FIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDL 139
+L +E + I E + V+ + L
Sbjct: 79 MLTEAKRKTTSPVVCYEQKAIEDIAIE-----------PDAYNVVLSS-----------L 116
Query: 140 AFVQYAADISKVVYSLHK 157
A Y A + ++
Sbjct: 117 AL-HYIASFDDICKKVYI 133
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 42.2 bits (99), Expect = 6e-05
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 19/97 (19%)
Query: 43 NNYNDIDGKTVLDLGCGSGILTF--------GSILLGADFCFALECDKE-ILDIFIDNKN 93
+ + ++DLGCG+G++ ++ + A+ + + + +
Sbjct: 216 QHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALD 275
Query: 94 EFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130
E +A+ S V + + V+ NPPF
Sbjct: 276 RCEFMINNAL----------SGVEPFRFNAVLCNPPF 302
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 42.0 bits (99), Expect = 6e-05
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEIL 85
TP + + + ++ ++LD CG+ L L L+ D ++
Sbjct: 107 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANL-----LTTVINQLELKGDVDVH 161
Query: 86 DIFIDNKNE-FEITNCDAILFEINEK-----SLDSSVFKQKVDTVIMNPPFG 131
+D + + A L L + + VD VI + P G
Sbjct: 162 ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVD-PVDVVISDLPVG 212
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 41.0 bits (97), Expect = 6e-05
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN------KNEFEITN 99
+G VLDL GSG L ++ G +E +++ I DN +N F +
Sbjct: 28 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK 87
Query: 100 CDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131
+A E+++D + D V ++PP+
Sbjct: 88 MEA------ERAIDC--LTGRFDLVFLDPPYA 111
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 42.1 bits (99), Expect = 7e-05
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 21/110 (19%)
Query: 31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADF-CFALECDKEILDIFI 89
+A ++ ++DG +VLD CGSG + L +E ++ L
Sbjct: 204 ASIANAMI-----ELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAE 258
Query: 90 DN------KNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTR 133
N ++ + DA S + VD I N P+G +
Sbjct: 259 MNALAAGVLDKIKFIQGDA---------TQLSQYVDSVDFAISNLPYGLK 299
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 41.2 bits (97), Expect = 7e-05
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 50 GKTVLDLGCGSGILTFG-SILLGAD-FCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107
G TVLD+G G+G S ++G +A++ +E+++ + N+ + N + + E
Sbjct: 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE 97
Query: 108 NEKSLDSSVFKQKVDTVIMNPPFGTRN 134
N+ L + D + M F
Sbjct: 98 NKIPLPDNTV----DFIFMA--FTFHE 118
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 41.6 bits (98), Expect = 7e-05
Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 35/152 (23%)
Query: 43 NNYNDIDGKTVLDLGCGSGILTFGSILL--GADFCF------ALECDKEILDIFIDNKNE 94
+ VLD+GCG+G+L+ A+E + L N E
Sbjct: 190 STLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLA---ANGVE 246
Query: 95 FEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF---GTRNCGIDLAFVQYAADISK- 150
E+ + S K + D +I NPPF + ++ A
Sbjct: 247 GEVFASNVF-----------SEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS 295
Query: 151 -----VVYSLHKTSTRESILKKIQAFKNVEQV 177
+V + +L + F E +
Sbjct: 296 GGELRIVANAFLPY--PDVLDET--FGFHEVI 323
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 40.2 bits (95), Expect = 1e-04
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNC----- 100
I LD GSG L ++ A +E D+ + I N + N
Sbjct: 51 PVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS 110
Query: 101 DAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131
+A+ F L + V ++PPF
Sbjct: 111 NAMSF------LAQK--GTPHNIVFVDPPFR 133
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 39.3 bits (91), Expect = 4e-04
Identities = 5/41 (12%), Positives = 8/41 (19%), Gaps = 6/41 (14%)
Query: 25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF 65
++D CG+G T
Sbjct: 38 NVERAVVVDLPRFELLFN------PELPLIDFACGNGTQTK 72
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 39.1 bits (91), Expect = 5e-04
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 28 HTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF-----GSILLGADFCFAL 78
+ I++ + G + D+G G+G + G + + +
Sbjct: 17 VPDIRIVNAIINLLNLP----KGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVM 68
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 38.8 bits (90), Expect = 5e-04
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILT 64
E+ +L L T+ ++ K V+DLGCG G L
Sbjct: 5 EETEKKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLL 44
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 39.4 bits (91), Expect = 5e-04
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 9/128 (7%)
Query: 6 IEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF 65
+ + L + + + PP L+ + + + T++D GCGSG L
Sbjct: 679 LNYNILLLGVKGPSEERMEAAFFKPP-LSKQRVEYALKHIRESSASTLVDFGCGSGSLLD 737
Query: 66 GSILLGADF--CFALECDKEILDI----FIDNKNEFEITNCDAILFEINEKSLDSSVFKQ 119
+ ++ + L N+ A L++ + DS
Sbjct: 738 SLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSR--LH 795
Query: 120 KVDTVIMN 127
VD
Sbjct: 796 DVDIGTCL 803
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 38.6 bits (90), Expect = 6e-04
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 47 DIDGKTVLDLGCGSGILT 64
+ VLDLGCG G L
Sbjct: 50 GRQPERVLDLGCGEGWLL 67
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis}
PDB: 3jwj_A
Length = 217
Score = 38.4 bits (89), Expect = 7e-04
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 30 PPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILT 64
P L ++ + + + V+DLGCG G L
Sbjct: 10 PISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLL 44
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1; HET: MSE; 1.60A
{Mesorhizobium loti}
Length = 243
Score = 38.2 bits (89), Expect = 8e-04
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 47 DIDGKTVLDLGCGSGILTF 65
++ G ++DLGCG G
Sbjct: 41 EVGGLRIVDLGCGFGWFCR 59
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 37.3 bits (87), Expect = 0.001
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 43 NNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDA 102
N + ++D GCG+G + + ++ + L + K + IT D
Sbjct: 11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFATK-LYCIDINVIALKE-VKEKFDSVITLSDP 68
Query: 103 ILFEINEKSLDSSVFKQKVDTVIMN 127
D+S VD ++
Sbjct: 69 KEIP------DNS-----VDFILFA 82
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 37.1 bits (87), Expect = 0.002
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN------KNEFEITN 99
DG LDL GSG L ++ G D +E + L + +N +FE+
Sbjct: 41 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK 100
Query: 100 CDAILFEINEKSLDS-SVFKQKVDTVIMNPPFG 131
DA ++L+ K + D V+++PP+
Sbjct: 101 MDA------NRALEQFYEEKLQFDLVLLDPPYA 127
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 37.1 bits (87), Expect = 0.002
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 44 NYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI 103
D+ G VLDL GSG L ++ GA +E D+ + N ++ A
Sbjct: 39 ARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLS--GAT 96
Query: 104 LFEINEKSLDSSVFKQKVDTVIMNPPFG 131
L ++ ++ VD V+ +PP+
Sbjct: 97 LRRGAVAAVVAAGTTSPVDLVLADPPYN 124
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 37.1 bits (86), Expect = 0.002
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 13/136 (9%)
Query: 49 DGKTVLDLGCGSGILTFGSILLGAD-FCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107
+T+ D+G GSG + + E +E + + N +++ A+
Sbjct: 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA 84
Query: 108 NEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKK 167
D D + + G G+ A + ++V + T ES
Sbjct: 85 PRAFDD---VPDNPDVIFIGG--GLTAPGVFAAAWKRLPVGGRLVAN---AVTVESEQML 136
Query: 168 IQAFKN----VEQVDV 179
K + +
Sbjct: 137 WALRKQFGGTISSFAI 152
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 36.3 bits (84), Expect = 0.002
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 26/87 (29%)
Query: 49 DGKTVLDLGCGSGILTF----GSILLGADFC-FALECDKEILDIFIDNKNEFEITNCDAI 103
+ K VLDLG +G++T + ++ D ALE + + D
Sbjct: 23 EMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALESHRGGNLV-----------RAD-- 69
Query: 104 LFEINEKSLDSSVFKQKVDTVIMNPPF 130
L S+ ++ VD V+ NPP+
Sbjct: 70 --------LLCSINQESVDVVVFNPPY 88
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 36.7 bits (85), Expect = 0.004
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 16 NFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF-----GSILL 70
NF + ++ +++ +L + N G+ +LDLGCG+G LT G+ +L
Sbjct: 28 NFWDATLYQDKHSFVWQYGEDLLQLL----NPQPGEFILDLGCGTGQLTEKIAQSGAEVL 83
Query: 71 GADF 74
G D
Sbjct: 84 GTDN 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.004
Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 42/147 (28%)
Query: 83 EILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFV 142
E + + + ++ NCD L I E SL+ P R L+
Sbjct: 335 ESIRDGLATWDNWKHVNCDK-LTTIIESSLNVL------------EPAEYRKMFDRLSVF 381
Query: 143 QYAADISKVVYSL----HKTSTRESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSL 198
+A I ++ SL S ++ K+ + + K S+
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-------------YSLVEKQPKESTISI 428
Query: 199 HDIEVDLL-----------RIITSDYN 214
I ++L I+ YN
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDH-YN 454
Score = 35.6 bits (81), Expect = 0.012
Identities = 43/271 (15%), Positives = 79/271 (29%), Gaps = 77/271 (28%)
Query: 7 EQYLQQLTFNFSNPKVHLEQYHTP-PHLAATI---LHTIQNNYNDI------DGKTVL-- 54
Y++Q +++ +V +Y+ + L ++ N + GKT +
Sbjct: 110 RMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 55 ------DLGC--GSGI--LTFGSILLGADFCFALECDKEILDIF------IDNKNEFEIT 98
+ C I L + C + +L++ ID
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKN-------C---NSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 99 NCDAILFEINE-KSLDSSVFKQK--------VDTV----IMNPPFG--------TRNCGI 137
+ I I+ ++ + K K + V N F TR +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQV 277
Query: 138 -DLAFVQYAADIS--KVVYSLHKTSTRESILKKI---------QAFK-NVEQVDVIAEMK 184
D IS +L + +LK + + N ++ +IAE
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 185 YDLNQSYKFHKKSLHDIEVDLLRIITSDYNN 215
D ++ K D L II S N
Sbjct: 338 RDGLATWDNWKHVNCD---KLTTIIESSLNV 365
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 36.3 bits (84), Expect = 0.004
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 44 NYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI 103
+ + K VLD+GC SG L G +E E + + + + + + +
Sbjct: 27 KHIKKEWKEVLDIGCSSGALGAAIKENGTR-VSGIEAFPEAAEQAKEKLDHVVLGDIETM 85
Query: 104 LFEINEKSLD 113
E+ D
Sbjct: 86 DMPYEEEQFD 95
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 36.2 bits (83), Expect = 0.004
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 5/30 (16%)
Query: 50 GKTVLDLGCGSGILTF-----GSILLGADF 74
VL+ GCG G + DF
Sbjct: 49 QTRVLEAGCGHGPDAARFGPQAARWAAYDF 78
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 36.0 bits (83), Expect = 0.005
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 5/30 (16%)
Query: 50 GKTVLDLGCGSGILTF-----GSILLGADF 74
L++GC +G T L D
Sbjct: 52 VSNGLEIGCAAGAFTEKLAPHCKRLTVIDV 81
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 35.9 bits (83), Expect = 0.005
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 50 GKTVLDLGCGSGILTF---GSILLGADF 74
G+++L++G G+G +G +
Sbjct: 37 GESLLEVGAGTGYWLRRLPYPQKVGVEP 64
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 35.7 bits (83), Expect = 0.005
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 50 GKTVLDLGCGSGILTFGSI----LLGADFCFALECDKEILDIFIDNKNEFEITNCDAI 103
V+D+GCGS G + F +A++ +++ N +F I NC I
Sbjct: 36 DDVVVDVGCGS-----GGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQII 88
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 36.1 bits (83), Expect = 0.005
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 49 DGKTVLDLGCGSGILTF-----GSILLGADF 74
+ L+LG G+G + G + D
Sbjct: 39 EEPVFLELGVGTGRIALPLIARGYRYIALDA 69
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 35.6 bits (82), Expect = 0.006
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN-KNEFEITNCDAILFEIN 108
VL+ G G+G LT +L G + +E +E+ I + EF IT D + FE
Sbjct: 46 FGNVLEFGVGTGNLTNKLLLAGRTV-YGIEPSREMRMIAKEKLPKEFSITEGDFLSFE-- 102
Query: 109 EKSLDSSVFKQKVDTVIMN 127
+DT++
Sbjct: 103 --------VPTSIDTIVST 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.006
Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 56/225 (24%)
Query: 3 LKHIEQYLQQLTFNFSNPKVHLEQ-YHTPPHLAAT---ILHTIQNNYNDIDGKTV--LDL 56
K I ++ TF + K L T P L +++ T L
Sbjct: 1707 FKEINEHSTSYTFR--SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL 1764
Query: 57 G------CGSGILTFGSIL--------LGADFCFALECDKEILDIFIDNKNEFEITNCDA 102
G + +++ S++ E + + N +
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 103 ILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNC-GIDLAFVQYAADISKVVYSLHKTSTR 161
L + E+ + V+ V N + N QY + + +L +
Sbjct: 1825 ALQYVVERVGKRT--GWLVEIV--N--Y---NVEN-----QQYV--AAGDLRALDTVT-- 1866
Query: 162 ESILKKIQAFKNVEQVDVIAEMKYDLNQSYKFHKKSLHDIEVDLL 206
++L I ++++D+I L +S SL ++E L
Sbjct: 1867 -NVLNFI----KLQKIDIIE-----LQKSL-----SLEEVEGHLF 1896
Score = 29.2 bits (65), Expect = 1.1
Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 24/123 (19%)
Query: 72 ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFG 131
AD F ILDI I+N I I E + +F+ VD +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN-YSAMIFETIVDGKLKTEKI- 1706
Query: 132 TRNCGIDLAFVQYAADISKVVYS-----LHKTS--------TRESILKKIQAFKNVEQVD 178
F + + + L T ++ + +++ +
Sbjct: 1707 ---------FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 179 VIA 181
A
Sbjct: 1758 TFA 1760
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 36.0 bits (82), Expect = 0.007
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 12/107 (11%)
Query: 29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSG-ILTFGSILLGADFCFALECDKEILDI 87
T L A ++ I+ +D+ +DLG G G ++ + + +E
Sbjct: 157 TSFDLVAQMIDEIKMTDDDL----FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKY 212
Query: 88 FIDNKNEFE-------ITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127
EF + + L + S + + +N
Sbjct: 213 AETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVN 259
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 35.9 bits (82), Expect = 0.007
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 20 PKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALE 79
++ LEQ + ++ I+ +G V+DL G GI +++ A +E
Sbjct: 71 SRLSLEQS-SGAVTSSYKSRFIR------EGTKVVDLTGGLGIDFI-ALMSKASQGIYIE 122
Query: 80 CDKEILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDL 139
+ E N D + + K + D + ++P +
Sbjct: 123 RNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVY 182
Query: 140 AFVQYAADISKVVYSL--------HKTSTRESILKKIQAFKNVEQVDVIAEM 183
A D+ + L K S + +Q+ +V+++ V+A
Sbjct: 183 AIADCEPDLIPLATELLPFCSSILAKLSPMIDLWDTLQSLLHVQELHVVAAH 234
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 35.8 bits (82), Expect = 0.008
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 50 GKTVLDLGCGSGILTF 65
G TVLDLGCG+G +
Sbjct: 84 GATVLDLGCGTGRDVY 99
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 36.1 bits (82), Expect = 0.008
Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 25/124 (20%)
Query: 26 QYHTPPHLAATILHTI--QNNYNDIDGKTVLDLGCGSGILTFGSIL----LGADFCFALE 79
T L + + + + D GSG L + +A +
Sbjct: 296 VVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWAND 355
Query: 80 CDKEILDI-----------FIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNP 128
+ L++ + + N IT D + V V+MNP
Sbjct: 356 IETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDF--------ANVSVVVMNP 407
Query: 129 PFGT 132
P+ +
Sbjct: 408 PYVS 411
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 35.2 bits (81), Expect = 0.009
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 3 LKHIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGI 62
+ + + + N P L + N + + D+GCG+G
Sbjct: 1 MSNENKTIHDFELNLIC-DFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGG 59
Query: 63 LTF 65
T
Sbjct: 60 QTM 62
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 34.8 bits (80), Expect = 0.011
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 4/79 (5%)
Query: 49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107
G +LD+G L + G A E + + N +
Sbjct: 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH---GLKEKIQVR 71
Query: 108 NEKSLDSSVFKQKVDTVIM 126
L + +V + +
Sbjct: 72 LANGLAAFEETDQVSVITI 90
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 34.8 bits (80), Expect = 0.011
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 49 DGKTVLDLGCGSGILT 64
DLGCG G T
Sbjct: 33 RVLNGYDLGCGPGNST 48
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 34.9 bits (80), Expect = 0.012
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 50 GKTVLDLGCGSGILTF 65
VL+L G+G T
Sbjct: 47 RGDVLELASGTGYWTR 62
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 34.8 bits (80), Expect = 0.013
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 25/138 (18%)
Query: 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN--KNEFEITNCDAILFE 106
V+D+ G G F A +A++ + +++ N N+ E IL
Sbjct: 195 LNDVVVDMFAGVG--PFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLE-HKIIPIL-- 249
Query: 107 INEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISK-----VVYSLHKTSTR 161
D K + VIMN P F+ A DI + Y++ K
Sbjct: 250 -----SDVREVDVKGNRVIMNLPKFAHK------FIDKALDIVEEGGVIHYYTIGKDF-- 296
Query: 162 ESILKKIQAFKNVEQVDV 179
+ +K + + E ++
Sbjct: 297 DKAIKLFEKKCDCEVLEK 314
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 34.4 bits (79), Expect = 0.015
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 49 DGKTVLDLGCGSGILTFGSILLGAD 73
G +LD GCG G + G D
Sbjct: 46 RGAKILDAGCGQGRIGGYLSKQGHD 70
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 34.5 bits (79), Expect = 0.016
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 50 GKTVLDLGCGSGILT 64
G +L+LGCG+G
Sbjct: 44 GAKILELGCGAGYQA 58
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural
genomics, midwest CENT structural genomics, protein
structure initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 33.7 bits (77), Expect = 0.024
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDNKNEFEITN 99
G +LD+G L + +G DF A E + N +E +T+
Sbjct: 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTS 72
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 33.7 bits (77), Expect = 0.026
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 50 GKTVLDLGCGSGILTF 65
G VL+ GCG G T
Sbjct: 38 GAKVLEAGCGIGAQTV 53
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 33.9 bits (77), Expect = 0.028
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 50 GKTVLDLGCGSGILTF 65
G V + CG
Sbjct: 119 GCVVASVPCGWMSELL 134
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L
protein, methyltransferase domain; 1.85A {Lactobacillus
casei}
Length = 275
Score = 33.8 bits (77), Expect = 0.028
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 50 GKTVLDLGCGSGILTF 65
G+ +L++GCG G L+
Sbjct: 44 GEKILEIGCGQGDLSA 59
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 33.6 bits (77), Expect = 0.030
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 47 DIDGKTVLDLGCGSGILTF 65
I T +D+G G G L+
Sbjct: 41 GITAGTCIDIGSGPGALSI 59
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 33.3 bits (77), Expect = 0.034
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDI----FIDNK 92
+ I N + + ++G G G T ++ +F A+E D ++ +D+
Sbjct: 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTL-ELVQRCNFVTAIEIDHKLCKTTENKLVDHD 76
Query: 93 NEFEITNCDAILFEINEK 110
N F++ N D + F+ +
Sbjct: 77 N-FQVLNKDILQFKFPKN 93
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 33.2 bits (76), Expect = 0.037
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 25 EQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSG 61
E Y T + + + LDLGCG+G
Sbjct: 8 ENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNG 44
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 33.3 bits (76), Expect = 0.039
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 50 GKTVLDLGCGSGILTF 65
VLD+GCG G T+
Sbjct: 54 EAEVLDVGCGDGYGTY 69
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 33.2 bits (76), Expect = 0.042
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 50 GKTVLDLGCGSGILTF 65
VLD+G G+G
Sbjct: 22 EHRVLDIGAGAGHTAL 37
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 32.8 bits (75), Expect = 0.048
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 24/97 (24%)
Query: 50 GKTVLDLGCGSGILTF-----GSILLGADFCFA-LECDKE-----ILDIFIDNKNEFEIT 98
+LD+GCGSG ++ G + G D + + L+ K EF++
Sbjct: 31 DDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE 90
Query: 99 NCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNC 135
N ++ F DSS D +M +
Sbjct: 91 NASSLSFH------DSS-----FDFAVMQ--AFLTSV 114
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 32.5 bits (74), Expect = 0.057
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 50 GKTVLDLGCGSGILT 64
+LD+G G+G T
Sbjct: 42 DGVILDVGSGTGRWT 56
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 32.6 bits (74), Expect = 0.065
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 50 GKTVLDLGCGSGILT 64
VL+L G G LT
Sbjct: 83 SGPVLELAAGMGRLT 97
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 32.5 bits (74), Expect = 0.071
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 38 LHTIQNNYNDIDGKTVLDLGCGSGILT 64
+ I + + VLDL CG+GI T
Sbjct: 30 VEEIFKEDAKREVRRVLDLACGTGIPT 56
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 32.1 bits (73), Expect = 0.093
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 50 GKTVLDLGCGSGILTF 65
+ D+GCG+G T
Sbjct: 47 DAKIADIGCGTGGQTL 62
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 32.1 bits (74), Expect = 0.095
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 49 DGKTVLDLGCGSGILTFGSILLGADF----CFALECDKEILDIFIDNKNEFEITNCDAIL 104
G+ L++G G + L+ F A E D+E + N
Sbjct: 55 GGEVALEIGTGHTAM---MALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVR---- 107
Query: 105 FEINEKSLDSSVFKQKVDTVIMNPP 129
+ + V + D + PP
Sbjct: 108 LVKSNGGIIKGVVEGTFDVIFSAPP 132
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; HET: SAH; 2.30A {Bacillus
cereus} PDB: 2gh1_A
Length = 284
Score = 32.2 bits (73), Expect = 0.095
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 50 GKTVLDLGCGSGILTF 65
++D GCG G L
Sbjct: 23 PVHIVDYGCGYGYLGL 38
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 32.1 bits (72), Expect = 0.11
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 3/121 (2%)
Query: 36 TILHTIQNNYNDIDGKTVLDLGCGSGI--LTFGSILLGADFCFALECDKEILDIFIDNKN 93
+L V D SGI + F + +A + + ++I +N
Sbjct: 39 AVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFK 98
Query: 94 EFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVVY 153
I D E + + PFGT I+ + +
Sbjct: 99 LNNI-PEDRYEIHGMEANFFLRKEWGFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLT 157
Query: 154 S 154
+
Sbjct: 158 A 158
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 32.2 bits (73), Expect = 0.11
Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 21/118 (17%)
Query: 31 PHLAATILHT--IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFC---FALECDK--- 82
P + I + Y + VLDL G GI + +I LE
Sbjct: 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQS--AIFYNKYCPRQYSLLEKRSSLY 95
Query: 83 EILDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVD----------TVIMNPPF 130
+ L+ + +I D + +D + N
Sbjct: 96 KFLNAKFEGSP-LQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTG 152
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus}
SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 31.6 bits (72), Expect = 0.11
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF 95
+D+GCG+G +T +A++ + E + N
Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVRR-VYAIDRNPEAISTTEMNLQRH 78
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 31.7 bits (71), Expect = 0.13
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADFCF-ALECDKEILDIFIDNKNEFEITNCDAILFEIN 108
++LD GCG L + A + D+ + + + T +
Sbjct: 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTI------KYR 103
Query: 109 EKSLDSSVFKQKVDTVIM 126
+ +S V+K D V +
Sbjct: 104 FLNKESDVYKGTYDVVFL 121
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 31.5 bits (71), Expect = 0.14
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADF--CFALECDKEILDIFIDNKNEFEITNCDAILFEI 107
G +++ G GSG LT + + E ++ + +N + I
Sbjct: 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDR----VTI 149
Query: 108 NEKSLDSSVFKQKVDTVIMNPP 129
K + + ++ VD VI++ P
Sbjct: 150 KLKDIYEGIEEENVDHVILDLP 171
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 31.6 bits (72), Expect = 0.15
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 46 NDIDGKTVLDLGCGSGILT 64
N++ LDL CG+G LT
Sbjct: 34 NNLVFDDYLDLACGTGNLT 52
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA
methylase, type I restriction enzyme ST protein; HET:
SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP:
c.66.1.45
Length = 445
Score = 31.9 bits (73), Expect = 0.16
Identities = 39/150 (26%), Positives = 49/150 (32%), Gaps = 42/150 (28%)
Query: 26 QYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGA-DFCFALECDKEI 84
QY TP L ++ I G+TV D CG+G LL A D+ KE
Sbjct: 152 QYFTPRPLIQAMVDCINPQ----MGETVCDPACGTG-----GFLLTAYDYMKGQSASKEK 202
Query: 85 LDIFIDNK---NEFEIT-------NC-----DAILFEI-NEKSLDSSVFKQKVDTVIMNP 128
D D + N I E SL+ VD ++ NP
Sbjct: 203 RDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPST-LVDVILANP 261
Query: 129 PFGTRNCGI---------------DLAFVQ 143
PFGTR G L F+Q
Sbjct: 262 PFGTRPAGSVDINRPDFYVETKNNQLNFLQ 291
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 31.5 bits (71), Expect = 0.17
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 17/99 (17%)
Query: 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN------KNEFEITNCDA 102
+ V+D+ G G L+ + G A+E D ++N ++ N D
Sbjct: 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN 184
Query: 103 ILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAF 141
F + D ++M T I A
Sbjct: 185 RDF----------PGENIADRILMGYVVRTHE-FIPKAL 212
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G
joint center for structural genomics, JCSG; HET: MSE;
1.90A {Exiguobacterium sibiricum 255-15}
Length = 243
Score = 31.2 bits (71), Expect = 0.17
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 49 DGKTVLDLGCGSGILTF 65
GK + D+GCG+G T
Sbjct: 33 PGKRIADIGCGTGTATL 49
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 31.4 bits (71), Expect = 0.18
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADF-CFALECDKEILDIFIDNKNEFEITNCDAILFEIN 108
+ VLD+GCG G F + ++ +++++ F + K ++ L +
Sbjct: 42 CRRVLDIGCGRG--EFLELCKEEGIESIGVDINEDMIK-FCEGKFNVVKSDAIEYLKSLP 98
Query: 109 EKSLD 113
+K LD
Sbjct: 99 DKYLD 103
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 31.4 bits (71), Expect = 0.18
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 50 GKTVLDLGCGSGILTF 65
VLDL CG G +F
Sbjct: 39 RGKVLDLACGVGGFSF 54
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin
regulator, actin-binding protein; HET: TAR; 1.60A
{Plasmodium falciparum} PDB: 2xf1_A
Length = 124
Score = 30.4 bits (68), Expect = 0.20
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 13/118 (11%)
Query: 80 CDKEILDIFIDNKNEFEITNCDAILFEINEKSL---------DSSVFKQKVDTVIMNPP- 129
+ + F + K C I+F I + + Q +D
Sbjct: 9 VNDNCVTEFNNMKIR---KTCGWIIFVIQNCEIIIHSKGASTTLTELVQSIDKNNEIQCA 65
Query: 130 FGTRNCGIDLAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAEMKYDL 187
+ + + F YA + S + S++++ILKKI+ + V A+ DL
Sbjct: 66 YVVFDAVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTSVIESAQDVADL 123
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 31.1 bits (70), Expect = 0.20
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 50 GKTVLDLGCGSGILT 64
VLD+ CG+G+ +
Sbjct: 58 CHRVLDVACGTGVDS 72
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET:
SAM; 2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 31.0 bits (70), Expect = 0.21
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 50 GKTVLDLGCGSGILTF 65
G TV+D CG+G T
Sbjct: 23 GDTVVDATCGNGNDTA 38
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 30.9 bits (70), Expect = 0.21
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 50 GKTVLDLGCGSGILTF 65
+ VLD+ G G +
Sbjct: 38 NEEVLDVATGGGHVAN 53
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 31.0 bits (70), Expect = 0.21
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 49 DGKTVLDLGCGSG-ILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAI 103
D + D+G GS + S L+ FALE + + L DN +F N +
Sbjct: 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLV 95
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 31.0 bits (70), Expect = 0.21
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 50 GKTVLDLGCGSGILTF 65
KTVLD G G +
Sbjct: 24 DKTVLDCGAGGDLPPL 39
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 30.9 bits (70), Expect = 0.22
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 48 IDGKTVLDLGCGSGILT 64
+ ++LD+ CG+G
Sbjct: 39 PEASSLLDVACGTGTHL 55
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 31.0 bits (70), Expect = 0.22
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 48 IDGKTVLDLGCGSGILT 64
++LD+ CG+G+
Sbjct: 49 PKAASLLDVACGTGMHL 65
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 30.9 bits (71), Expect = 0.24
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN-KNEF 95
+L I N +G TV+++G G+G LT + + +E D+E+++
Sbjct: 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERL 78
Query: 96 EITNCDAILFEINE 109
E+ N DA F
Sbjct: 79 EVINEDASKFPFCS 92
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 31.0 bits (70), Expect = 0.25
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF 105
+L+LG G T D +E +E + + + I
Sbjct: 39 PFFRPGNLLELGSFKGDFTSRLQEHFND-ITCVEASEEAISH-AQGRLKDGI-------- 88
Query: 106 EINEKSLDSSVFKQKVDTVIMN 127
+ + ++ D +++
Sbjct: 89 TYIHSRFEDAQLPRRYDNIVLT 110
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 30.6 bits (69), Expect = 0.26
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 49 DGKTVLDLGCGSGILTFGSILLG-ADFCFALECDKEILDIFIDN 91
+ + D+G L ++ A F A E
Sbjct: 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQ 64
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 30.5 bits (68), Expect = 0.28
Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 38 LHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCF-ALECDKEILDIFI----DNK 92
L I ++ + +DLG G G + + + + ++ KE L
Sbjct: 17 LTEIIGQFDRV----HIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKP 72
Query: 93 NEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADISKVV 152
++ ++N + +SL K D++ + P+GT + ++++ +
Sbjct: 73 SKGGLSN--VVFVIAAAESLPFE-LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLA 129
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 30.9 bits (69), Expect = 0.28
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 42 QNNYNDIDGKTVLDLGCGSGILTFGSILLGADF----CFALECDKEILDIFIDNKNEFEI 97
+ + + +D+G G+ + LLGA A E D + N + +
Sbjct: 58 HQDSDKSTLRRGIDIGTGASCI---YPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL 114
Query: 98 TNCDAILFEINEKSLDSSVFK---QKVDTVIMNPPFGTRN 134
++ ++ + L ++ + D + NPPF
Sbjct: 115 SDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQ 154
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 30.7 bits (69), Expect = 0.29
Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 26/163 (15%)
Query: 29 TPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIF 88
TP +A I + + V+D CG G T L A++ D + +
Sbjct: 61 TPEKIAEHIAGRVSQS---FKCDVVVDAFCGVGGNTI-QFALTGMRVIAIDIDPVKIALA 116
Query: 89 IDNKNEFEITNCDAILFEINEKSLDSSVFKQ--KVDTVIMNPPFGTRNCG----IDLA-- 140
+N + I + I F D + K D V ++PP+G + D+
Sbjct: 117 RNNAEVYGIAD--KIEFICG----DFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTM 170
Query: 141 -------FVQYAADISK-VVYSLHKTSTRESILKKIQAFKNVE 175
+ + I+ +VY L + + + + VE
Sbjct: 171 MSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVE 213
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 30.6 bits (69), Expect = 0.31
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 50 GKTVLDLGCGSGILTF 65
VLDLG G+G +
Sbjct: 55 PCRVLDLGGGTGKWSL 70
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 30.9 bits (70), Expect = 0.31
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN------KNEFEITNCDA 102
G VLD+ +G + + GAD ++ ++ +N ++ + A
Sbjct: 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA 276
Query: 103 ILFEINEKSLDSSVFKQKVDTVIMNPP 129
FE EK +K D V+++PP
Sbjct: 277 --FEEMEKLQKK---GEKFDIVVLDPP 298
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 30.2 bits (68), Expect = 0.31
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 20/129 (15%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADFC-FALECDKEILDIFIDNKNEFEITNCDAILFEIN 108
V+D G+G T L G +A + ++ L ++ I N + L
Sbjct: 23 ESIVVDATMGNGNDTA--FLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTE--LILDG 78
Query: 109 EKSLDSSVFKQKVDTVIMNPPF-------GTRNCGIDLAFVQYAADISK-------VVYS 154
++LD V ++ + I N + L ++ D + ++Y
Sbjct: 79 HENLDHYV-REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137
Query: 155 LHKTSTRES 163
H E
Sbjct: 138 GHDGGDMEK 146
>2hcn_A RNA-directed RNA polymerase (NS5); WEST-NIle virus RNA polymerase,
structural genomics, marseil structural genomics program
@ AFMB, MSGP, vizier; 2.35A {Kunjin virus} PDB: 2hcs_A
2hfz_A
Length = 595
Score = 30.8 bits (69), Expect = 0.33
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 115 SVFKQKVDTVIMNPPFGTR 133
VFK+KVDT PP G +
Sbjct: 45 RVFKEKVDTKAPEPPEGVK 63
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 30.6 bits (70), Expect = 0.39
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 22/112 (19%)
Query: 48 IDGKTVLDLGCGSGILTFGSILLGADFCF---ALECDKE-ILDIFIDNKNEFEITNCDAI 103
++G+ +LD+ G G TFG L A F + ++ I N +
Sbjct: 289 VEGEKILDMYSGVG--TFGIYL--AKRGFNVKGFDSNEFAIEMA-RRNVEINNVDAE--- 340
Query: 104 LFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGIDLAFVQYAADIS--KVVY 153
FE+ D V + DTVI++PP R G+ V+ +VY
Sbjct: 341 -FEVAS---DREVSVKGFDTVIVDPP---RA-GLHPRLVKRLNREKPGVIVY 384
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET:
SAH; 1.30A {Homo sapiens}
Length = 215
Score = 30.0 bits (67), Expect = 0.40
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 21 KVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF 65
+ + A + ++ +L LGCG+ L++
Sbjct: 20 SAPYDWFGDFSSFRALLEPELR------PEDRILVLGCGNSALSY 58
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 30.1 bits (67), Expect = 0.41
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILT-FGSILLGADFCFALECDKEILDIFIDN 91
LAA I+ ++ +L LG +G + + +A+E I+ +D
Sbjct: 59 LAAAIIKGLKVMPIK-RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDA 117
Query: 92 KNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127
E N IL + N K + + +KVD + +
Sbjct: 118 CA--ERENIIPILGDAN-KPQEYANIVEKVDVIYED 150
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 29.8 bits (68), Expect = 0.43
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 48 IDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN------KNEFEITNCD 101
LD GSG + + G + +E D E + + +N +
Sbjct: 40 PRRGRFLDPFAGSGAVGLEAASEGWEAVL-VEKDPEAVRLLKENVRRTGLGARVVALPVE 98
Query: 102 AILFEINEKSLDSSVFKQKVDTVIMNPPFG 131
L E + ++ M PP+
Sbjct: 99 VFLPEAKAQ-------GERFTVAFMAPPYA 121
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 30.1 bits (68), Expect = 0.50
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 50 GKTVLDLGCGSG 61
G +LDLG GSG
Sbjct: 37 GTRILDLGSGSG 48
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 30.0 bits (68), Expect = 0.51
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDN--KNEFEITNCDAI---L 104
K VL+ +G +++ G +++ +E LDI N N+ +++ + + +
Sbjct: 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV 280
Query: 105 FEINEKSLDSSVFKQKVDTVIMNPP 129
F++ D +K D ++M+PP
Sbjct: 281 FKLLRTYRDR---GEKFDVIVMDPP 302
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 29.9 bits (68), Expect = 0.54
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDK---EILDIFIDNKN 93
++ + N VL++G G GILT + A + +E DK + + N
Sbjct: 38 FVNKAVESANLTKDDVVLEIGLGKGILT-EELAKNAKKVYVIEIDKSLEPYANKLKELYN 96
Query: 94 EFEITNCDAILFEINE 109
EI DA+ ++N+
Sbjct: 97 NIEIIWGDALKVDLNK 112
>2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus,
high-throughput assay, protein; HET: PGE; 1.85A {Dengue
virus} PDB: 2j7w_A*
Length = 635
Score = 30.0 bits (67), Expect = 0.54
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 115 SVFKQKVDTVIMNPPFGTR 133
VFK+KVDT P GTR
Sbjct: 87 RVFKEKVDTRTPRPLPGTR 105
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 29.7 bits (67), Expect = 0.57
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 46 NDIDGKTVLDLGCGSGILT 64
D + +LDLG G+G+L+
Sbjct: 41 VDTENPDILDLGAGTGLLS 59
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 29.4 bits (67), Expect = 0.62
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDI----FIDNK 92
+L+ I N + TV ++G G G LT + + ++E D + ++ N
Sbjct: 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTT-KLAKISKQVTSIELDSHLFNLSSEKLKLNT 75
Query: 93 NEFEITNCDAILFEINEK 110
+ + D + F+ K
Sbjct: 76 R-VTLIHQDILQFQFPNK 92
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 29.9 bits (66), Expect = 0.63
Identities = 15/90 (16%), Positives = 23/90 (25%)
Query: 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILF 105
TVLDLGCG G + + + + + +F
Sbjct: 31 KKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIF 90
Query: 106 EINEKSLDSSVFKQKVDTVIMNPPFGTRNC 135
+ DSS F +C
Sbjct: 91 SAEFITADSSKELLIDKFRDPQMCFDICSC 120
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center
for eukaryotic structural genomics, CESG, structural
genomics; 2.79A {Cyanidioschyzon merolae}
Length = 281
Score = 29.4 bits (65), Expect = 0.70
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 41 IQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFAL-ECDKEILDIFIDNKNEFEITN 99
+ I GKTV +LG G+G+++ + L GAD A D EIL+ N E +
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANS 130
Query: 100 CDA 102
C +
Sbjct: 131 CSS 133
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 29.4 bits (66), Expect = 0.71
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 50 GKTVLDLGCGSG 61
LDLG G G
Sbjct: 83 QAKGLDLGAGYG 94
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 29.4 bits (67), Expect = 0.77
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 49 DGKTVLDLGCGSG--ILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFE 106
+LDLG G+G L S + A++ + + + N I N +
Sbjct: 109 QPCRILDLGTGTGAIALALASERPDCEI-IAVDRMPDAVSLAQRNAQHLAIKNIHIL--- 164
Query: 107 INEKSLDSSVFKQKVDTVIMNPP 129
+ S++ Q+ ++ NPP
Sbjct: 165 --QSDWFSALAGQQFAMIVSNPP 185
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 29.4 bits (66), Expect = 0.79
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 49 DGKTVLDLGCGSG 61
G VLD+GCG G
Sbjct: 61 SGDRVLDVGCGIG 73
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 29.4 bits (65), Expect = 0.81
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 5 HIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDID---GKTVLDLGCGSG 61
+E Q +P L ++ P L ++N G+ + +G G
Sbjct: 79 KLEMEKAQEVIESDSPWETLRSFYFYP----RYLELLKNEAALGRFRRGERAVFIGGGPL 134
Query: 62 ILT 64
LT
Sbjct: 135 PLT 137
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 29.1 bits (66), Expect = 0.84
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILT 64
PH+ A L ++++ G +LD+G GSG LT
Sbjct: 68 PHMHAFALEYLRDHLKP--GARILDVGSGSGYLT 99
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 29.2 bits (65), Expect = 0.95
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINE 109
G ++D G GSG + +K + N + + + ++
Sbjct: 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV-- 170
Query: 110 KSLDSSVFKQKVDTVIMNPP 129
+ + ++ VD + ++ P
Sbjct: 171 RDISEGFDEKDVDALFLDVP 190
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding,
structural GENO protein structure initiative, PSI; 1.75A
{Escherichia coli O157}
Length = 376
Score = 29.3 bits (66), Expect = 0.98
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS 111
V+DL G G L+ G+ G D A+E D+ ++ N D + +N +
Sbjct: 4 NVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQED--VSLLNAEI 61
Query: 112 LDSSVFKQ-KVDTVIMNPP 129
+ +D +I PP
Sbjct: 62 IKGFFKNDMPIDGIIGGPP 80
>2kw5_A SLR1183 protein; structural genomics, northeast structural
genomics consortium (NESG), PSI-2, protein structure
initiative, unknown function; NMR {Synechocystis} PDB:
3mer_A
Length = 202
Score = 28.7 bits (64), Expect = 1.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 41 IQNNYNDIDGKTVLDLGCGSG 61
+ + N I +L L G G
Sbjct: 21 LVSVANQIPQGKILCLAEGEG 41
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima}
SCOP: c.66.1.41
Length = 219
Score = 28.6 bits (64), Expect = 1.1
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 50 GKTVLDLGCGSGILT 64
+++G G+G
Sbjct: 48 EGRGVEIGVGTGRFA 62
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 28.7 bits (65), Expect = 1.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 50 GKTVLDLGCGSGILT 64
G LD+G GSGILT
Sbjct: 78 GAKALDVGSGSGILT 92
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 28.4 bits (64), Expect = 1.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 50 GKTVLDLGCGSGILT 64
G +D+G GSG LT
Sbjct: 81 GSRAIDVGSGSGYLT 95
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 28.5 bits (63), Expect = 1.5
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 50 GKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDI 87
G +VLDLGCG G G + ++ + ++
Sbjct: 65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIND 102
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 28.5 bits (64), Expect = 1.6
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDI-----FIDN 91
IL I VL++GCG+G LT +L A ++ D ++ +
Sbjct: 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVK-LLPLAKKVITIDIDSRMISEVKKRCLYEG 88
Query: 92 KNEFEITNCDAILFEINEK 110
N E+ DAI +
Sbjct: 89 YNNLEVYEGDAIKTVFPKF 107
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 28.6 bits (63), Expect = 1.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 31 PHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTF 65
P IL + + G TVL+ G GSG ++
Sbjct: 91 PKDINMILSMM----DINPGDTVLEAGSGSGGMSL 121
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 28.3 bits (62), Expect = 1.8
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 51 KTVLDLGCGSGILTFGSILLGADFCF-ALECDKEILDIFIDNKNEFEITNCDAILFEINE 109
T+ DL CG L + L A+ + A + D ++ F+D + +
Sbjct: 134 NTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVG-FVDEALTRLNVPHRTNVAD--- 189
Query: 110 KSLDSSVFKQKVDTVIM 126
L + D ++
Sbjct: 190 --LLEDRLDEPADVTLL 204
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 28.5 bits (64), Expect = 1.8
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 20/70 (28%)
Query: 86 DIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPFGTRNCGI-------- 137
DI + + I + + + K V NPPFG+
Sbjct: 235 DIEGNLDHGGAIRLGNTLGSDGENL--------PKAHIVATNPPFGSAAGTNITRTFVHP 286
Query: 138 ----DLAFVQ 143
L F+Q
Sbjct: 287 TSNKQLCFMQ 296
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 28.2 bits (62), Expect = 2.2
Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 46 NDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIF----------IDNKNEF 95
+D + + VL + G+G A + D + + I K
Sbjct: 45 DDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYK 104
Query: 96 EITNCDAILFEINEKSLDSSVFKQKVDTVIMN 127
+ I + S+ + K + +
Sbjct: 105 FDYIQETIRSDTFVSSVREVFYFGKFNIIDWQ 136
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 27.9 bits (62), Expect = 2.3
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 49 DGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEF 95
G+ + D+G GSG ++ L G +E + ++ N + +
Sbjct: 55 RGELLWDIGGGSGSVSVEWCLAGGR-AITIEPRADRIENIQKNIDTY 100
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 27.8 bits (63), Expect = 2.5
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 37 ILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDKEILDI----FIDNK 92
+L I + + T++++G G G LT +L D +E D++++ + K
Sbjct: 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTD-YLLTECDNLALVEIDRDLVAFLQKKYNQQK 75
Query: 93 NEFEITNCDAILFEINE 109
N I DA+ F+ +
Sbjct: 76 N-ITIYQNDALQFDFSS 91
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 27.8 bits (62), Expect = 2.5
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 50 GKTVLDLGCGSG 61
VLD+G G G
Sbjct: 56 NSKVLDIGSGLG 67
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 27.8 bits (61), Expect = 2.7
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILT--FGSILLGADFCFALECDKEILDIFID 90
LAA +L + +G +L LG SG I+ + +E ++ +
Sbjct: 62 LAAALLKGLIELPVK-EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL- 119
Query: 91 NKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVIMNPPF 130
+ N IL + VD + +
Sbjct: 120 -TVVRDRRNIFPIL-GDARFPEKYRHLVEGVDGLYADVAQ 157
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 8 QYLQQLTF-NFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFG 66
+ L + F ++ + Y A + + + LG G G +
Sbjct: 372 ENLDSGVYNTFEQDQIKYDVYGE-----AVVGALKDLGADGRKTVVIYLLGGGRGPIGTK 426
Query: 67 SILLGADFCFALECDKEILD--IFIDNKNEFEITNCDAILFEINEKSLDSSV 116
+ ++ +E L ++I KN N L +N ++ V
Sbjct: 427 ILKSEREYNNTFRQGQESLKVKLYIVEKNP----NAIVTLKYMNVRTWKRRV 474
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, structu genomics; 2.20A
{Mycobacterium avium}
Length = 407
Score = 27.5 bits (62), Expect = 3.7
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 29 TPPHLAATILHTIQNNYNDIDGKTVLD--LGCGS 60
P +L ++ ++ Y D+D + D LG S
Sbjct: 31 KPLNLVVGLVDELRRRYPDLDETLISDMILGVVS 64
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus
musculus} PDB: 2iip_A* 3rod_A*
Length = 265
Score = 27.0 bits (59), Expect = 4.2
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 19 NPKVHLEQYHTPP---HLAATILHTIQNNY------NDIDGKTVLDLGCGSGI 62
NP+ +LE+Y++ IL + N + G+ ++D+G G I
Sbjct: 17 NPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTI 69
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB:
2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B*
Length = 97
Score = 26.1 bits (57), Expect = 4.5
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 7 EQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYN 46
EQY ++ ++ + + PP L + I N+
Sbjct: 5 EQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNT 44
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 26.7 bits (60), Expect = 4.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 50 GKTVLDLGCGSGIL 63
G V+D+G GSG +
Sbjct: 31 GTRVIDVGTGSGCI 44
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 27.0 bits (60), Expect = 5.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 51 KTVLDLGCGSGIL 63
+TV+DL G G
Sbjct: 181 RTVIDLAGGHGTY 193
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 26.6 bits (58), Expect = 5.5
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 33 LAATILHTIQNNYNDIDGKTVLDLGCGSGILT 64
L A I++ ++N GK+VL LG SG
Sbjct: 58 LGAAIMNGLKNFPIK-PGKSVLYLGIASGTTA 88
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 26.7 bits (58), Expect = 5.5
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 13 LTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGI 62
L N++ P+ L + L ++ G+T++D+G G +
Sbjct: 36 LRNNYAPPRGDLCNPNGVGPWKLRCLAQTFAT-GEVSGRTLIDIGSGPTV 84
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 26.8 bits (60), Expect = 5.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 50 GKTVLDLGCGSGILT 64
G +L++G GSG
Sbjct: 92 GMNILEVGTGSGWNA 106
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 26.8 bits (59), Expect = 5.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 47 DIDGKTVLDLGCGSGILT 64
D VLD+GCG G T
Sbjct: 83 DDKATAVLDIGCGEGYYT 100
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 26.7 bits (60), Expect = 5.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 45 YNDIDGKTVLDLGCGSGIL 63
KTV D+G GSG +
Sbjct: 119 IRKYGIKTVADIGTGSGAI 137
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A
1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A*
1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A*
2vgg_A* ...
Length = 550
Score = 26.9 bits (60), Expect = 5.9
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 130 FGTRNCGID---LAFVQYAADISKVVYSLHKTSTRESILKKIQAFKNVEQVDVIAE 182
FG +D +F++ A+D+ +V L + I+ KI+ + V + D I E
Sbjct: 250 FGVEQ-DVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFDEILE 304
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine
methylase, transferase/DNA complex; HET: DNA C49 5CM;
2.80A {Haemophilus influenzae biotypeaegyptius} SCOP:
c.66.1.26
Length = 324
Score = 26.6 bits (59), Expect = 6.1
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 52 TVLDLGCGSGILTFGSILLGADFCFALECDKEILDIFIDNKNEFEITNCDAILFEINEKS 111
++ L G+G L G G A E DK I + N + ++ D + +I+
Sbjct: 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA-KLIKGD--ISKISSDE 58
Query: 112 LDSSVFKQKVDTVIMNPP 129
K D +I PP
Sbjct: 59 F------PKCDGIIGGPP 70
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 26.8 bits (60), Expect = 6.9
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 35 ATILHTIQNNYNDIDGKTVL-DLGC 58
ILH +N DG VL D GC
Sbjct: 239 GCILHYTENECEMRDGDLVLIDAGC 263
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 26.5 bits (58), Expect = 7.7
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 5 HIEQYLQQLTFNFSNPKVHLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSG 61
+E L E Y + + I + + I VLDLGCG G
Sbjct: 77 RVEALSDDLECTL-GFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQG 132
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex
AP-2, endocytosis, cell membrane, coated PIT binding,
membrane, disease mutation; 1.90A {Mus musculus}
Length = 273
Score = 26.2 bits (57), Expect = 8.0
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 85 LDIFIDNKNEFEITNCDAILFEINEKSLDSSVFKQKVDTVI 125
+ IF NK + N L ++ + ++ + VD +
Sbjct: 72 MFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTV 112
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural
genomics, structural genomics consortium; HET: SAH;
1.70A {Homo sapiens} SCOP: c.66.1.15
Length = 263
Score = 26.2 bits (57), Expect = 8.1
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 19 NPKVHLEQYHTPPH---LAATILHTIQNNY------NDIDGKTVLDLGCGSGI 62
P+ +L Y++ A +L + G T++D+G G I
Sbjct: 16 LPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTI 68
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 26.1 bits (58), Expect = 8.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 50 GKTVLDLGCGSGILT 64
G+ VL++G G G T
Sbjct: 71 GQKVLEIGTGIGYYT 85
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 26.2 bits (57), Expect = 8.6
Identities = 12/94 (12%), Positives = 22/94 (23%), Gaps = 3/94 (3%)
Query: 23 HLEQYHTPPHLAATILHTIQNNYNDIDGKTVLDLGCGSGILTFGSILLGADFCFALECDK 82
L + + LD G G G +T + LE K
Sbjct: 67 VLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK 126
Query: 83 EILDI---FIDNKNEFEITNCDAILFEINEKSLD 113
+L+ + + + + D
Sbjct: 127 HMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 26.1 bits (58), Expect = 9.2
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 19/88 (21%)
Query: 49 DGKTVLDLGCGSGILTFGSILL-GADFCFALECDKEILDIFIDNKNEFEITNCDAILFEI 107
G+ VLD+ G F + A++ D E L + A+ +
Sbjct: 214 PGERVLDVYSYVG--GFALRAARKGAYALAVDKDLEALGVLDQA----------ALRLGL 261
Query: 108 NEKSLDSSVFK------QKVDTVIMNPP 129
V+++PP
Sbjct: 262 RVDIRHGEALPTLRGLEGPFHHVLLDPP 289
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB:
2f9a_A* 2fa0_A* 2fa3_A*
Length = 450
Score = 26.3 bits (57), Expect = 9.4
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 4 KHIEQYLQQLTFNFSNPKVHLEQYHTP-------PHLAATILHTIQNNYNDIDGKTVLDL 56
+ +E+ QQL + + KV L A + N ++D+ GK V+
Sbjct: 295 RDLEKVSQQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAGKRVVMF 354
Query: 57 GCGSG 61
GSG
Sbjct: 355 SYGSG 359
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,296,660
Number of extensions: 193223
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 180
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)