BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17465
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AL0|A Chain A, Crystal Structure Of Human Ps-1
pdb|4AL1|A Chain A, Crystal Structure Of Human Ps-1 Gsh-analog Complex
Length = 152
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 12 LSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVER 71
+S+P A+L ++L++K+ +++T + R RK+ F +PED + G + + DPDVER
Sbjct: 8 MSSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCRSDPDVER 67
Query: 72 TRRAHANDLENI-PFFFTAAFAYMCTSPGPWLAQTLFLVYAVSRIXXXXXXXXXXMPQPT 130
RAH ND+E I PF F F Y P P++A FLV+ V R+ + P
Sbjct: 68 CLRAHRNDMETIYPFLFL-GFVYSFLGPNPFVAWMHFLVFLVGRV-AHTVAYLGKLRAPI 125
Query: 131 RAIVWSVGYIINIYMAVQ 148
R++ +++ + MA+Q
Sbjct: 126 RSVTYTLAQLPCASMALQ 143
>pdb|3DWW|A Chain A, Electron Crystallographic Structure Of Human Microsomal
Prostaglandin E Synthase 1
pdb|3DWW|B Chain B, Electron Crystallographic Structure Of Human Microsomal
Prostaglandin E Synthase 1
pdb|3DWW|C Chain C, Electron Crystallographic Structure Of Human Microsomal
Prostaglandin E Synthase 1
Length = 158
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 12 LSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVER 71
+S+P A+L ++L++K+ +++T + R RK+ F +PED + G + + DPDVER
Sbjct: 14 MSSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCRSDPDVER 73
Query: 72 TRRAHANDLENI-PFFFTAAFAYMCTSPGPWLAQTLFLVYAVSRIXXXXXXXXXXMPQPT 130
RAH ND+E I PF F F Y P P++A FLV+ V R+ + P
Sbjct: 74 CLRAHRNDMETIYPFLFL-GFVYSFLGPNPFVAWMHFLVFLVGRV-AHTVAYLGKLRAPI 131
Query: 131 RAIVWSVGYIINIYMAVQ 148
R++ +++ + MA+Q
Sbjct: 132 RSVTYTLAQLPCASMALQ 149
>pdb|2H8A|A Chain A, Structure Of Microsomal Glutathione Transferase 1 In
Complex With Glutathione
Length = 154
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 5 SITSIMDLSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTV-LARGA--- 60
+ +MD N V A+ Y +I++ K++F S TA QR +VF +PED +G
Sbjct: 2 DLKQLMD--NEVLMAFTSYATIILAKMMFLSSATAFQRLTNKVFANPEDCAGFGKGENAK 59
Query: 61 KCIKDDPDVERTRRAHANDLENIPFFFTAAFAYMCTSPGPWLAQTLFLVYAVSRIXXXXX 120
K ++ D VER RRAH NDLENI F Y + P A F ++ +RI
Sbjct: 60 KFLRTDEKVERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARI-YHTI 118
Query: 121 XXXXXMPQPTRAIVWSVGYIINIYMA 146
+PQP R + + VGY + + MA
Sbjct: 119 AYLTPLPQPNRGLAFFVGYGVTLSMA 144
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 89 AAFAYMCTSPGPWLAQTLFLVYAVSRIXXXXXXXXXXMPQPTRA-IVWS 136
+ +C+ PWL+ LFL+ SR +PQ T + I WS
Sbjct: 65 SEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWS 113
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 89 AAFAYMCTSPGPWLAQTLFLVYAVSRIXXXXXXXXXXMPQPTRA-IVWS 136
+ +C+ PWL+ LFL+ SR +PQ T + I WS
Sbjct: 69 SEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWS 117
>pdb|2EWL|A Chain A, Solution Structure Of The C-Terminal Domain (Monomer) Of
The Hpv45 Oncoprotein E7
pdb|2F8B|A Chain A, Nmr Structure Of The C-Terminal Domain (Dimer) Of Hpv45
Oncoprotein E7
pdb|2F8B|B Chain B, Nmr Structure Of The C-Terminal Domain (Dimer) Of Hpv45
Oncoprotein E7
Length = 56
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 62 CIKDDPDVERTRRAHANDLENIPFFFTAAFAYMCTSPGPWLA 103
C K D +E T + A DL + F + +++C PW A
Sbjct: 16 CCKCDGRIELTVESSAEDLRTLQQLFLSTLSFVC----PWCA 53
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 27.7 bits (60), Expect = 2.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 46 RVFISPEDTVLARGAKCIKDDPDVERTRRAH 76
R I P D + A G C+ D PD+ R + H
Sbjct: 278 RSGIGPHDVLDAAGVGCLIDMPDIGRNLQDH 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,697,790
Number of Sequences: 62578
Number of extensions: 116197
Number of successful extensions: 215
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 8
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)