Query psy17465
Match_columns 154
No_of_seqs 147 out of 1112
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 23:13:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01124 MAPEG: MAPEG family; 99.9 2.5E-24 5.4E-29 153.4 13.3 128 20-150 1-128 (129)
2 COG3686 Predicted membrane pro 99.9 1.3E-21 2.8E-26 136.8 14.2 121 20-150 4-124 (125)
3 COG3788 Uncharacterized relati 99.8 3.6E-18 7.7E-23 119.7 15.3 122 18-153 5-126 (131)
4 COG5331 Uncharacterized protei 98.9 1.5E-08 3.3E-13 71.6 10.1 80 70-150 53-132 (139)
5 PF11833 DUF3353: Protein of u 75.2 35 0.00076 26.2 10.5 25 126-150 136-160 (194)
6 KOG1962|consensus 56.1 83 0.0018 24.7 7.4 56 17-79 44-100 (216)
7 PF09980 DUF2214: Predicted me 49.4 78 0.0017 23.4 6.1 68 12-87 74-141 (150)
8 PF05232 BTP: Bacterial Transm 35.8 1.1E+02 0.0025 19.2 6.4 48 74-121 7-54 (67)
9 PRK03830 small acid-soluble sp 35.0 41 0.00089 21.8 2.3 23 63-85 5-27 (73)
10 TIGR03090 SASP_tlp small, acid 27.9 61 0.0013 20.9 2.2 21 65-85 6-26 (70)
11 PF12273 RCR: Chitin synthesis 25.8 95 0.0021 21.9 3.2 10 37-46 21-30 (130)
12 PF11119 DUF2633: Protein of u 20.5 2E+02 0.0044 17.8 3.5 23 100-122 10-32 (59)
13 COG3088 CcmH Uncharacterized p 20.1 3.7E+02 0.0081 19.9 5.9 28 17-44 103-130 (153)
No 1
>PF01124 MAPEG: MAPEG family; InterPro: IPR001129 This entry represents a widespread superfamily known as MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) []. Included are: 5-lipoxygenase activating protein (gene FLAP), which seems to be required for the activation of 5-lipoxygenase. Leukotriene C4 synthase (2.5.1.37 from EC), which catalyses the production of LTC4 from LTA4. Microsomal glutathione S-transferase II (2.5.1.18 from EC) (GST-II), which also produces LTC4 from LTA4. Prostaglandin E synthase, which catalyses the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.; PDB: 3DWW_A 2Q7R_D 2Q7M_B 2PNO_J 3B29_A 3HKK_A 2UUI_A 3PCV_A 2UUH_A 3LEO_A ....
Probab=99.92 E-value=2.5e-24 Score=153.45 Aligned_cols=128 Identities=28% Similarity=0.412 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCCcHHHHHHHHHhhcchhHHHHHHHHHHHHhhCCC
Q psy17465 20 YLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTAAFAYMCTSPG 99 (154)
Q Consensus 20 ~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~R~~rAh~N~~E~~p~f~~~~l~a~~~~~~ 99 (154)
+++|++++.+.+++++..++..|.+++...+.++.+ + ++.+++.+++++|++|||+|++|++|+|+++++++...|.+
T Consensus 1 ~~~~~~~l~~~~~~l~~~v~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~~~R~~ra~~N~~E~~~~f~~~~~~~~~~g~~ 78 (129)
T PF01124_consen 1 TAAWSALLVLLLFYLSYIVGAARFKAKVKGGEGDAN-P-RDNPPTLPPWLERAQRAHQNFLENLPLFLVAVLLAILTGAS 78 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHTCHCCHHHTT-T-SSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-T-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCC-c-ccccccCcHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhCCc
Confidence 367899999999999999999998877644322211 1 12234466899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy17465 100 PWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAA 150 (154)
Q Consensus 100 ~~~~~~l~~~f~~~Ri~h~~~Y~~~~~~~~~R~~~~~~~~~~~~~l~~~ll 150 (154)
+..++.++++|+++|++|..+|. .++.++.|+++|.+|+.+++.+++..+
T Consensus 79 ~~~~~~l~~~~~~~R~~y~~~y~-~~~~~~~R~~~~~~~~~~~~~l~~~~~ 128 (129)
T PF01124_consen 79 PSLAALLAWVFVVARVAYAVGYI-AGNIPPLRSLGFLVGLLCLLALALAAL 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-CSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999995 444677999999999999999998765
No 2
>COG3686 Predicted membrane protein [Function unknown]
Probab=99.88 E-value=1.3e-21 Score=136.79 Aligned_cols=121 Identities=24% Similarity=0.265 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCCcHHHHHHHHHhhcchhHHHHHHHHHHHHhhCCC
Q psy17465 20 YLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTAAFAYMCTSPG 99 (154)
Q Consensus 20 ~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~R~~rAh~N~~E~~p~f~~~~l~a~~~~~~ 99 (154)
..+|..+..+..++.+.....++ ..+.+++|||...+ .++..+|+.|||+|++|.+|.|.++++.+.+.|.+
T Consensus 4 ~~w~V~i~i~lpl~~~~~A~~~~-g~~~Na~PRd~~~k-------l~G~a~RA~~A~~N~fE~fp~FaAavl~a~l~G~~ 75 (125)
T COG3686 4 ALWCVLIAILLPLLCSAYAKFEG-GRRWNAGPRDFLAK-------LQGLAGRANRAQQNFFETFPAFAAAVLVAHLTGNP 75 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCcCCCCchhhhcc-------CccHHHHHHHHHhhhHHhhHHHHHHHHHHHHcCCh
Confidence 44555555555565555544443 36778899998532 45688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy17465 100 PWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAA 150 (154)
Q Consensus 100 ~~~~~~l~~~f~~~Ri~h~~~Y~~~~~~~~~R~~~~~~~~~~~~~l~~~ll 150 (154)
....+.+++.|+++|++|.+.|+ .+.+..||++|++|+.++..+++.+.
T Consensus 76 ~~~~~~~A~l~i~~RllYi~~Yl--a~~p~lRSlvW~~gmvg~~~lfv~~~ 124 (125)
T COG3686 76 SQAANTLAILFIAARLLYIPCYL--ADIPYLRSLVWLGGMVGTGALFVALA 124 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999994 44678999999999999999998764
No 3
>COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]
Probab=99.80 E-value=3.6e-18 Score=119.67 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCCcHHHHHHHHHhhcchhHHHHHHHHHHHHhhC
Q psy17465 18 RAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTAAFAYMCTS 97 (154)
Q Consensus 18 ~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~R~~rAh~N~~E~~p~f~~~~l~a~~~~ 97 (154)
.....|+.+.++..+.+|+.+.+.|.|+++..+ +.+.++++|+.|||.|..|++|.+++++++.++.|
T Consensus 5 mvstlyavl~~llll~LS~~vVrlR~k~rVa~g------------dgg~~eLqraira~gNatEYIPi~lill~~lemng 72 (131)
T COG3788 5 MVSALYAVLNALLLLKLSFDVVRLRMKYRVAYG------------DGGFSELQRAIRAHGNATEYIPIGLILLLFLEMNG 72 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhheec------------CCChHHHHHHHHHcCChHHHhHHHHHHHHHHHHcC
Confidence 456788999999999999999999999887642 44678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy17465 98 PGPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAALYF 153 (154)
Q Consensus 98 ~~~~~~~~l~~~f~~~Ri~h~~~Y~~~~~~~~~R~~~~~~~~~~~~~l~~~ll~~~ 153 (154)
..+.+++.++.+++++|++|..+. .+.+.++|..++..++++.+.+.+..+.+.
T Consensus 73 a~tw~ihilG~il~~gRv~Ha~g~--~~~~~~~R~~Gm~aTw~~liv~~lanl~y~ 126 (131)
T COG3788 73 AETWMVHILGIILTAGRVLHAYGL--HHRLSPWRASGMSATWCALIVMVLANLWYL 126 (131)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH--hccCCcchhhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999888 355778999999999999999988877653
No 4
>COG5331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=1.5e-08 Score=71.63 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=70.2
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q psy17465 70 ERTRRAHANDLENIPFFFTAAFAYMCTSPGPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQA 149 (154)
Q Consensus 70 ~R~~rAh~N~~E~~p~f~~~~l~a~~~~~~~~~~~~l~~~f~~~Ri~h~~~Y~~~~~~~~~R~~~~~~~~~~~~~l~~~l 149 (154)
--..+.-.|++|.+.+|...++...+++.++.....++|+|+..|.+|++++. ..|.-..|+-.|..|+..+..+|+++
T Consensus 53 ~~V~nnl~NqFElPVLF~alcl~L~iT~~~n~vtv~lAWiFVl~Ry~Hs~VHv-tsN~lr~R~p~f~~gfavLa~~wiwf 131 (139)
T COG5331 53 LSVSNNLANQFELPVLFYALCLLLYITQAVNTVTVNLAWIFVLFRYAHSVVHV-TSNRLRLRQPLFLAGFAVLAVWWIWF 131 (139)
T ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhcccceeeeHHHHHHHHHHHHHHHhee-hhchhhhhhhHHHHHHHHHHHHHHHH
Confidence 44556889999999999999999999999999999999999999999999996 45566789999999998888887765
Q ss_pred H
Q psy17465 150 A 150 (154)
Q Consensus 150 l 150 (154)
-
T Consensus 132 a 132 (139)
T COG5331 132 A 132 (139)
T ss_pred H
Confidence 3
No 5
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=75.24 E-value=35 Score=26.21 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=16.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Q psy17465 126 MPQPTRAIVWSVGYIINIYMAVQAA 150 (154)
Q Consensus 126 ~~~~~R~~~~~~~~~~~~~l~~~ll 150 (154)
+....|+++|.++.+..-.++-.++
T Consensus 136 ~~~~~rA~~~~~~~L~~G~~lGs~l 160 (194)
T PF11833_consen 136 ERKLGRAFLWTLGGLVVGLILGSLL 160 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557999999888776555544433
No 6
>KOG1962|consensus
Probab=56.15 E-value=83 Score=24.72 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCCChhhhHHhhccCCCCCCcHHHHHHHHHhhc
Q psy17465 17 FRAYLFYMSILIVKVLFSSLLTARQRFR-KRVFISPEDTVLARGAKCIKDDPDVERTRRAHAND 79 (154)
Q Consensus 17 ~~~~~~~~~ll~~~~~~~s~~~~~~R~~-~~~~~~p~d~~~~~~~~~~~~~~~~~R~~rAh~N~ 79 (154)
+..+..+...+.+..++.|+.=.+.|.. .+...||.|.. ....+..+...|+++|.
T Consensus 44 ~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~~~~-------~a~~~~~~~l~raqrn~ 100 (216)
T KOG1962|consen 44 VLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPTDQP-------LARTHLLEALFRAQRNL 100 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccch-------HHHHHHHHHHHHHHhhh
Confidence 4444555555555566677665554443 23344555541 11335567788888886
No 7
>PF09980 DUF2214: Predicted membrane protein (DUF2214); InterPro: IPR018706 This family has no known function.
Probab=49.40 E-value=78 Score=23.40 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=30.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCCcHHHHHHHHHhhcchhHHHHH
Q psy17465 12 LSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFF 87 (154)
Q Consensus 12 l~~~~~~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~R~~rAh~N~~E~~p~f~ 87 (154)
++||.|..=..--.+.++..+.-+....+.|+..+....|+- ..+...+..|..+.+.-.+=.+|+++
T Consensus 74 ~~nP~F~~K~~lfvligllSi~PT~~~irWr~~~~~~~~p~~--------~~~~~~r~~~~v~~el~l~~~ipl~A 141 (150)
T PF09980_consen 74 LHNPLFWAKMGLFVLIGLLSIYPTLTFIRWRKALRAGQAPVP--------SPAEVRRLRRIVMIELHLLALIPLLA 141 (150)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456655443333334444445555555555554332211100 00022345556666555555555543
No 8
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=35.77 E-value=1.1e+02 Score=19.16 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=41.8
Q ss_pred HHHhhcchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17465 74 RAHANDLENIPFFFTAAFAYMCTSPGPWLAQTLFLVYAVSRIVYTVVY 121 (154)
Q Consensus 74 rAh~N~~E~~p~f~~~~l~a~~~~~~~~~~~~l~~~f~~~Ri~h~~~Y 121 (154)
-.|.=.+|...+....-+++...|.+...+..+...+.+.=++|..+|
T Consensus 7 i~hai~FE~~~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~if 54 (67)
T PF05232_consen 7 ILHAILFEVGALLISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIF 54 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999999999999998888888888888888887777
No 9
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=34.98 E-value=41 Score=21.84 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=18.4
Q ss_pred CCCCcHHHHHHHHHhhcchhHHH
Q psy17465 63 IKDDPDVERTRRAHANDLENIPF 85 (154)
Q Consensus 63 ~~~~~~~~R~~rAh~N~~E~~p~ 85 (154)
+.-.+.++|+|..-+|++||+=-
T Consensus 5 DdRsDNVEkLQ~mi~nTieNi~e 27 (73)
T PRK03830 5 DDRSDNVEKLQEMIQNTIENIEE 27 (73)
T ss_pred CcccchHHHHHHHHHHHHHHHHH
Confidence 33457899999999999999743
No 10
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=27.95 E-value=61 Score=20.88 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.5
Q ss_pred CCcHHHHHHHHHhhcchhHHH
Q psy17465 65 DDPDVERTRRAHANDLENIPF 85 (154)
Q Consensus 65 ~~~~~~R~~rAh~N~~E~~p~ 85 (154)
-.+.++|+|..-+|++||+=-
T Consensus 6 RsDNVEkLQ~mi~nTieN~~e 26 (70)
T TIGR03090 6 RSDNVEKLQQMIDNTIENMEE 26 (70)
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 456899999999999999743
No 11
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.80 E-value=95 Score=21.87 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=4.3
Q ss_pred HHHHHHhhhc
Q psy17465 37 LTARQRFRKR 46 (154)
Q Consensus 37 ~~~~~R~~~~ 46 (154)
...+.|.+++
T Consensus 21 ~~~rRR~r~G 30 (130)
T PF12273_consen 21 CHNRRRRRRG 30 (130)
T ss_pred HHHHHHhhcC
Confidence 3344444443
No 12
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=20.48 E-value=2e+02 Score=17.84 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy17465 100 PWLAQTLFLVYAVSRIVYTVVYA 122 (154)
Q Consensus 100 ~~~~~~l~~~f~~~Ri~h~~~Y~ 122 (154)
..++.+...+++.||++|..+=.
T Consensus 10 triVLLISfiIlfgRl~Y~~I~a 32 (59)
T PF11119_consen 10 TRIVLLISFIILFGRLIYSAIGA 32 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34666777888999999976654
No 13
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=20.12 E-value=3.7e+02 Score=19.94 Aligned_cols=28 Identities=25% Similarity=0.257 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17465 17 FRAYLFYMSILIVKVLFSSLLTARQRFR 44 (154)
Q Consensus 17 ~~~~~~~~~ll~~~~~~~s~~~~~~R~~ 44 (154)
....++|..-+++..+...++.++.|++
T Consensus 103 ~~T~lLW~~Pv~llllG~~~~~~~~rrr 130 (153)
T COG3088 103 GQTLLLWGLPVVLLLLGGVLLVRRARRR 130 (153)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 5678889987777777777777777655
Done!