Query psy17465
Match_columns 154
No_of_seqs 147 out of 1112
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 23:14:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dww_A Prostaglandin E synthas 100.0 6.5E-36 2.2E-40 221.6 10.8 142 10-152 12-153 (158)
2 2h8a_A Microsomal glutathione 100.0 5.6E-32 1.9E-36 199.7 2.6 142 10-152 5-150 (154)
3 3pcv_A Leukotriene C4 synthase 99.9 2.4E-23 8.2E-28 153.7 16.9 121 15-150 3-123 (156)
4 2q7r_A Arachidonate 5-lipoxyge 99.9 8.4E-24 2.9E-28 156.9 10.9 121 15-150 7-127 (161)
5 2dl1_A Spartin; SPG20, MIT, st 6.0 3.6E+02 0.012 18.1 2.4 24 62-85 5-28 (116)
6 1bl1_A Parathyroid hormone rec 5.6 2.7E+02 0.0092 14.2 1.2 7 115-121 22-28 (31)
7 3m03_A ORC6, origin recognitio 5.6 3.6E+02 0.012 17.3 2.2 15 10-24 41-55 (95)
8 2i15_A A05_ORF129, hypothetica 5.4 4.2E+02 0.014 17.5 2.4 21 73-93 93-113 (135)
9 3ehu_C Corticoliberin; G prote 5.3 3.1E+02 0.011 12.7 1.2 8 71-78 6-13 (21)
10 1lgh_A LH II, B800/850, light 5.2 5.5E+02 0.019 14.8 3.4 23 128-150 14-36 (56)
No 1
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle, isomerase, membrane, transmembrane; HET: GSH; 3.50A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=221.59 Aligned_cols=142 Identities=33% Similarity=0.589 Sum_probs=125.3
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCCcHHHHHHHHHhhcchhHHHHHHH
Q psy17465 10 MDLSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTA 89 (154)
Q Consensus 10 ~~l~~~~~~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~R~~rAh~N~~E~~p~f~~~ 89 (154)
.+++||+++.+++|++++++|++++++.+++.|.|+|++.||||.+..++.+.+.++++++|++|||+|++|++|+|+++
T Consensus 12 ~~~~~~v~~~~a~~a~ll~lk~l~ls~~t~~~R~~~kvf~~pED~~~~g~~~~~~~~~~~~Ra~RAh~N~lE~~p~Fl~~ 91 (158)
T 3dww_A 12 LVMSSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCRSDPDVERCLRAHRNDMETIYPFLFL 91 (158)
T ss_dssp -----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCSTTSCCSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCChHHHHhcCCccccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999754322233346789999999999999999999999
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy17465 90 AFAYMCTSPGPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAALY 152 (154)
Q Consensus 90 ~l~a~~~~~~~~~~~~l~~~f~~~Ri~h~~~Y~~~~~~~~~R~~~~~~~~~~~~~l~~~ll~~ 152 (154)
++++.++|+++.++..++++|+++|++|+++|. .+.|++.|+++|.+|+++++.|+++++.+
T Consensus 92 ~ll~~l~g~~~~~~~~l~~~fv~~Rilh~~~Y~-~~~p~~~Rsl~~~vg~~~~~~m~~~~l~~ 153 (158)
T 3dww_A 92 GFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAYL-GKLRAPIRSVTYTLAQLPCASMALQILWE 153 (158)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHTT-SSCCGGGGHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999994 55567899999999999999999999875
No 2
>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH; 3.20A {Rattus norvegicus} SCOP: f.56.1.1
Probab=99.97 E-value=5.6e-32 Score=199.67 Aligned_cols=142 Identities=35% Similarity=0.520 Sum_probs=113.8
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHh----hccCCCCCCcHHHHHHHHHhhcchhHHH
Q psy17465 10 MDLSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLA----RGAKCIKDDPDVERTRRAHANDLENIPF 85 (154)
Q Consensus 10 ~~l~~~~~~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~----~~~~~~~~~~~~~R~~rAh~N~~E~~p~ 85 (154)
++++||+++.+++|++++.+++++++..+++.|.++|.+.+|||.+.. ++++...++++++|++|||+|++|++|+
T Consensus 5 ~~~~~~~~~~~~~~a~ll~l~~l~~s~~v~~~R~~~~~~~~~ed~~~~g~~~~~~~~~~~~~~~~Ra~rAh~N~~E~~p~ 84 (154)
T 2h8a_A 5 QLMDNEVLMAFTSYATIILAKMMFLSSATAFQRLTNKVFANPEDCAGFGKGENAKKFLRTDEKVERVRRAHLNDLENIVP 84 (154)
T ss_dssp ----CHHHHHHHHHHHHHHTTHHHHGGGSCCCCCCCTTC------------------CHHHHHHHHHHHHHHHHHHTTHH
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHhhhcccccccccccCCHHHHHHHHHHHhhhhHHHH
Confidence 346999999999999999999999999999999999998899987532 1223334668999999999999999999
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy17465 86 FFTAAFAYMCTSPGPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAALY 152 (154)
Q Consensus 86 f~~~~l~a~~~~~~~~~~~~l~~~f~~~Ri~h~~~Y~~~~~~~~~R~~~~~~~~~~~~~l~~~ll~~ 152 (154)
|+++++++.++|+++.++..++++|+++|++|+.+|. .+++.+.|+++|.+|+++++.|+++.+.+
T Consensus 85 F~~~~ll~~~~g~~~~~~~~l~~~~v~~Ri~h~~~y~-~~~~~~~R~~~~~~~~~~~~~l~~~~l~~ 150 (154)
T 2h8a_A 85 FLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAYL-TPLPQPNRGLAFFVGYGVTLSMAYRLLRS 150 (154)
T ss_dssp HHHHHHHTTTSCCCSTTHHHHHHHHHHHHHHHHHHHH-SSCSHHHHHHHHHHHTHHHHHHHHTC---
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999994 45444899999999999999999987754
No 3
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=99.91 E-value=2.4e-23 Score=153.69 Aligned_cols=121 Identities=22% Similarity=0.138 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCCcHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy17465 15 PVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTAAFAYM 94 (154)
Q Consensus 15 ~~~~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~R~~rAh~N~~E~~p~f~~~~l~a~ 94 (154)
+++...++++.+..++++++++.+++.|+|.|+. .|+|. ++++++|++|||+|++|++|+|++++++++
T Consensus 3 ~el~lla~v~vl~~l~~~~~s~~V~~~R~k~~V~-~P~~~----------g~~~f~Ra~RAH~N~lE~~P~fl~ll~l~~ 71 (156)
T 3pcv_A 3 DEVALLAAVTLLGVLLQAYFSLQVISARRAFRVS-PPLTT----------GPPEFERVYRAQVNCSEYFPLFLATLWVAG 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-TTCCC----------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCC----------CCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567778888888888999999999999887774 45553 568999999999999999999999999999
Q ss_pred hhCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy17465 95 CTSPGPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAA 150 (154)
Q Consensus 95 ~~~~~~~~~~~l~~~f~~~Ri~h~~~Y~~~~~~~~~R~~~~~~~~~~~~~l~~~ll 150 (154)
+.++ +.++..++++|+++|++|+.+|. .+ ++.|+.+|.+++.+++.+++...
T Consensus 72 l~~~-~~~a~~lg~~~~~gRily~~gY~-~~--~~~R~~G~~~t~~~~~~L~~~~~ 123 (156)
T 3pcv_A 72 IFFH-EGAAALCGLVYLFARLRYFQGYA-RS--AQLRLAPLYASARALWLLVALAA 123 (156)
T ss_dssp HHTC-HHHHHHHHHHHHHHHHHHHHHHH-HC--GGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-HHHHHHHHHHHHHHHHHHHHHHh-cC--CCccHHHHHHHHHHHHHHHHHHH
Confidence 9985 57899999999999999999994 34 67999999999999998876543
No 4
>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg, membrane protein, lipid transport; HET: 3CS; 4.00A {Homo sapiens} SCOP: f.56.1.1 PDB: 2q7m_A*
Probab=99.90 E-value=8.4e-24 Score=156.94 Aligned_cols=121 Identities=15% Similarity=0.066 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhHHhhccCCCCCCcHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy17465 15 PVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLENIPFFFTAAFAYM 94 (154)
Q Consensus 15 ~~~~~~~~~~~ll~~~~~~~s~~~~~~R~~~~~~~~p~d~~~~~~~~~~~~~~~~~R~~rAh~N~~E~~p~f~~~~l~a~ 94 (154)
|+....++++.+..++++++++.+++.|+|.|+.. |+| .++++++|++|||+|++||+|+|+++++++.
T Consensus 7 ~e~~~~~l~a~l~~l~~~~~s~~V~~~R~k~~V~~-p~~----------~g~~~f~R~~RAh~N~lE~~P~fl~llll~~ 75 (161)
T 2q7r_A 7 GNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRS-FQR----------TGTLAFERVYTANQNCVDAYPTFLAVLWSAG 75 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS-CCS----------CCCHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCCC-CCC----------CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45777788888888999999999999999877652 333 3678999999999999999999999999999
Q ss_pred hhCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q psy17465 95 CTSPGPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIINIYMAVQAA 150 (154)
Q Consensus 95 ~~~~~~~~~~~l~~~f~~~Ri~h~~~Y~~~~~~~~~R~~~~~~~~~~~~~l~~~ll 150 (154)
+.| ++.++..++++|+++|++|+.+|. .++. .|+.+|.+++.+++.|++..+
T Consensus 76 l~g-~~~~a~~~G~i~l~gRily~~gY~--~~p~-~R~~G~~~~~l~l~~l~~~~l 127 (161)
T 2q7r_A 76 LLC-SQVPAAFAGLMYLFVRQKYFVGYL--GERT-QSTPGYIFGKRIILFLFLMSV 127 (161)
T ss_dssp HHS-CHHHHHHHHHHHHHHHHHHHHHTC--CSSS-CCCCCSCCCHHHHHHHHHHHH
T ss_pred HcC-ChHHHHHHHHHHHHHHHHHHHHHh--CCCc-chHHHHHHHHHHHHHHHHHHH
Confidence 999 788999999999999999999993 4444 899999888888777766544
No 5
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=6.03 E-value=3.6e+02 Score=18.06 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=19.2
Q ss_pred CCCCCcHHHHHHHHHhhcchhHHH
Q psy17465 62 CIKDDPDVERTRRAHANDLENIPF 85 (154)
Q Consensus 62 ~~~~~~~~~R~~rAh~N~~E~~p~ 85 (154)
.+.++..++++.++|.-.+|.+--
T Consensus 5 ~~~e~~~l~~ik~~h~~AF~~Is~ 28 (116)
T 2dl1_A 5 SSGEPAEIKIIREAYKKAFLFVNK 28 (116)
T ss_dssp CTTSCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445778999999999999887643
No 6
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=5.61 E-value=2.7e+02 Score=14.22 Aligned_cols=7 Identities=57% Similarity=1.132 Sum_probs=3.4
Q ss_pred HHHHHHH
Q psy17465 115 IVYTVVY 121 (154)
Q Consensus 115 i~h~~~Y 121 (154)
+.|+++|
T Consensus 22 ~iYTVGY 28 (31)
T 1bl1_A 22 MIYTVGY 28 (31)
T ss_dssp HHHHHHH
T ss_pred eEEEEee
Confidence 3455555
No 7
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=5.60 E-value=3.6e+02 Score=17.34 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=10.4
Q ss_pred cccCchHHHHHHHHH
Q psy17465 10 MDLSNPVFRAYLFYM 24 (154)
Q Consensus 10 ~~l~~~~~~~~~~~~ 24 (154)
+|++.|++.+.++|.
T Consensus 41 ~D~s~P~f~aaA~~~ 55 (95)
T 3m03_A 41 LDLSRPLFTSAALLS 55 (95)
T ss_dssp CCTTSHHHHHHHHHH
T ss_pred ccccccHHHHHHHHH
Confidence 467788777766654
No 8
>2i15_A A05_ORF129, hypothetical protein Mg296 homolog; structural genomics, MPN423, hypothetical protien, all alpha structure, PSI; 2.40A {Mycoplasma pneumoniae} SCOP: a.291.1.1
Probab=5.38 E-value=4.2e+02 Score=17.45 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=15.7
Q ss_pred HHHHhhcchhHHHHHHHHHHH
Q psy17465 73 RRAHANDLENIPFFFTAAFAY 93 (154)
Q Consensus 73 ~rAh~N~~E~~p~f~~~~l~a 93 (154)
+.+-+|+.|.+.+|..+..+-
T Consensus 93 ~~ccq~fyeal~~fisalait 113 (135)
T 2i15_A 93 KSCCQSFYEALTLFISALAIT 113 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999987665443
No 9
>3ehu_C Corticoliberin; G protein-coupled receptor, corticotropin releasing factor, fold, MBP fusion, extracellular domain, sugar transport; HET: BTB MAL; 1.96A {Escherichia coli}
Probab=5.31 E-value=3.1e+02 Score=12.68 Aligned_cols=8 Identities=38% Similarity=0.613 Sum_probs=4.9
Q ss_pred HHHHHHhh
Q psy17465 71 RTRRAHAN 78 (154)
Q Consensus 71 R~~rAh~N 78 (154)
-.+.||.|
T Consensus 6 ~~qQA~~N 13 (21)
T 3ehu_C 6 LAQQAHSN 13 (26)
T ss_pred HHHHHHHh
Confidence 35667766
No 10
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=5.24 E-value=5.5e+02 Score=14.83 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=15.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q psy17465 128 QPTRAIVWSVGYIINIYMAVQAA 150 (154)
Q Consensus 128 ~~~R~~~~~~~~~~~~~l~~~ll 150 (154)
+|.|.+.-+.+++..+++.+...
T Consensus 14 dP~~~L~~l~~~v~vlAllIH~~ 36 (56)
T 1lgh_A 14 NPSTWLPVIWIVATVVAIAVHAA 36 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777766654
Done!