RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17465
         (154 letters)



>gnl|CDD|216311 pfam01124, MAPEG, MAPEG family.  This family is has been called
           MAPEG (Membrane Associated Proteins in Eicosanoid and
           Glutathione metabolism). It includes proteins such as
           Prostaglandin E synthase. This enzyme catalyzes the
           synthesis of PGE2 from PGH2 (produced by cyclooxygenase
           from arachidonic acid). Because of structural
           similarities in the active sites of FLAP, LTC4 synthase
           and PGE synthase, substrates for each enzyme can compete
           with one another and modulate synthetic activity.
          Length = 123

 Score = 80.8 bits (200), Expect = 2e-20
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 23  YMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHANDLEN 82
           +  +L + +L  SLL  + R + +V    +              P+ ER +RAH N LEN
Sbjct: 1   WALLLALLLLVLSLLVGKARKKAKV---GKGDGSPPRDLDDPLPPEFERAQRAHQNTLEN 57

Query: 83  IPFFFTAAFAYMCTSPGPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTRAIVWSVGYIIN 142
           +P F  A      T   P LA  L  ++ V+R+++ V YA   +P P R++ +++G++  
Sbjct: 58  LPLFLAALLLAGLT-GSPGLAALLAWLFVVARVLHAVGYATGNIP-PLRSLGFALGFLAL 115

Query: 143 IYMAVQAA 150
           + +A+ A 
Sbjct: 116 LALALLAL 123


>gnl|CDD|226211 COG3686, COG3686, Predicted membrane protein [Function unknown].
          Length = 125

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 71  RTRRAHANDLENIPFFFTAAF-AYMCTSPGPWLAQTLFLVYAVSRIVYTVVYAVVVMPQP 129
           R  RA  N  E  P F  A   A++  +P      TL +++  +R++Y   Y   +    
Sbjct: 47  RANRAQQNFFETFPAFAAAVLVAHLTGNPSQAAN-TLAILFIAARLLYIPCYLADI--PY 103

Query: 130 TRAIVWSVGYIINIYMAVQAAL 151
            R++VW  G +    + V  A 
Sbjct: 104 LRSLVWLGGMVGTGALFVALAF 125


>gnl|CDD|226311 COG3788, COG3788, Uncharacterized relative of glutathione
           S-transferase, MAPEG superfamily [General function
           prediction only].
          Length = 131

 Score = 29.3 bits (66), Expect = 0.39
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 17/141 (12%)

Query: 12  LSNPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVER 71
           +   V   Y    ++L++K+   S    R R + RV                    +++R
Sbjct: 2   MKGMVSALYAVLNALLLLKL---SFDVVRLRMKYRVAYGDGG------------FSELQR 46

Query: 72  TRRAHANDLENIPFFFTAAFAYMCTSPGPWLAQTLFLVYAVSRIVYTVVYAVVVMPQPTR 131
             RAH N  E IP                W+   L ++    R+++   Y +     P R
Sbjct: 47  AIRAHGNATEYIPIGLILLLFLEMNGAETWMVHILGIILTAGRVLH--AYGLHHRLSPWR 104

Query: 132 AIVWSVGYIINIYMAVQAALY 152
           A   S  +   I M +    Y
Sbjct: 105 ASGMSATWCALIVMVLANLWY 125


>gnl|CDD|185558 PTZ00329, PTZ00329, eukaryotic translation initiation factor 1A;
           Provisional.
          Length = 155

 Score = 29.0 bits (65), Expect = 0.59
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 40  RQRFRKRVFISPEDTVLA-----RGAKC---IKDDPDVERTRRAH 76
           R + RKRV+I+  D +L      + +K    +K  PD  R  + H
Sbjct: 62  RGKMRKRVWINIGDIILVSLRDFQDSKADVILKYTPDEARALKQH 106


>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
          Length = 1355

 Score = 28.9 bits (64), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 98  PGPWLAQTLFLVYAVSRIVYTVVYAVV 124
           PG WLA TLF ++ V  + YT+   +V
Sbjct: 67  PGAWLADTLFFIFGV--MAYTIPVIIV 91


>gnl|CDD|216806 pfam01955, CbiZ, Adenosylcobinamide amidohydrolase.  This
          prokaryotic protein family includes CbiZ which converts
          adenosylcobinamide (AdoCbi) to adenosylcobyric acid
          (AdoCby), an intermediate of the de novo coenzyme B12
          biosynthetic route.
          Length = 188

 Score = 28.0 bits (63), Expect = 1.7
 Identities = 5/26 (19%), Positives = 7/26 (26%)

Query: 65 DDPDVERTRRAHANDLENIPFFFTAA 90
           DP+           L +     TA 
Sbjct: 38 TDPEAYLAEVLERLGLGDTVGLLTAV 63


>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase.
            Members of this protein family have a novel N-terminal
           domain, a single predicted membrane-spanning helix, and
           a predicted cystosolic histidine kinase domain. We
           designate this protein PrsK, and its companion
           DNA-binding response regulator protein (TIGR02915) PrsR.
           These predicted signal-transducing proteins appear to
           enable enhancer-dependent transcriptional activation.
           The prsK gene is often associated with exopolysaccharide
           biosynthesis genes [Protein fate, Protein and peptide
           secretion and trafficking, Signal transduction,
           Two-component systems].
          Length = 679

 Score = 26.6 bits (59), Expect = 6.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 19  AYLFYMSILIVKVLFSSLLTARQRFRKRVFIS 50
           A+LF   +L+  +LFS       R R RVFIS
Sbjct: 266 AFLFAAGLLLAVLLFS----GTLRARLRVFIS 293


>gnl|CDD|217831 pfam03988, DUF347, Repeat of Unknown Function (DUF347).  This
           repeat is found as four tandem repeats in a family of
           bacterial membrane proteins. Each repeat contains two
           transmembrane regions and a conserved tryptophan.
          Length = 55

 Score = 24.4 bits (54), Expect = 7.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 92  AYMCTSP-----GPWLAQTLFLVYAVSRIVYTVVYAVVV 125
           A + T+      G +L  +L L YAVS  ++  + AVV+
Sbjct: 6   AKILTTTLGTTLGDFLTDSLGLGYAVSSAIFAALLAVVL 44


>gnl|CDD|99713 cd05830, Sortase_D_5, Sortase D (SrtD) is a membrane transpeptidase
           found in gram-positive bacteria that anchors surface
           proteins to peptidoglycans of the bacterial cell wall
           envelope. This involves a transpeptidation reaction in
           which the surface protein substrate is cleaved at the
           cell wall sorting signal and covalently linked to
           peptidoglycan for display on the bacterial surface.
           Sortases are grouped into different classes and
           subfamilies based on sequence, membrane topology,
           genomic positioning, and cleavage site preference. Class
           D sortases are further classified into subfamilies 4 and
           5. This group contains a subset of Class D sortases
           belonging to subfamily-5 represented by Streptomyces
           avermitilis SAV4337. Subfamily-5 sortases recognize a
           nonstandard sorting signal (LAXTG) and have replaced
           Sortase A in some gram-postive bacteria. They may play a
           housekeeping role in the cell.
          Length = 137

 Score = 25.7 bits (57), Expect = 8.0
 Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 1/39 (2%)

Query: 104 QTLFLVYAVSRIVYTVVYAV-VVMPQPTRAIVWSVGYII 141
              +  Y V      +   V V+ P P +         +
Sbjct: 77  ADGWYTYVVRSSEIVLPTDVEVIAPVPGQPGAEPTDRYL 115


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,168,363
Number of extensions: 764431
Number of successful extensions: 915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 911
Number of HSP's successfully gapped: 34
Length of query: 154
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 65
Effective length of database: 6,990,096
Effective search space: 454356240
Effective search space used: 454356240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.0 bits)