RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17465
         (154 letters)



>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 139

 Score =  123 bits (309), Expect = 2e-37
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 14  NPVFRAYLFYMSILIVKVLFSSLLTARQRFRKRVFISPEDTVL----ARGAKCIKDDPDV 69
           N V  A+  Y +I++ K++F S  TA QR   +VF +PED           K ++ D  V
Sbjct: 1   NEVLMAFTSYATIILAKMMFLSSATAFQRLTNKVFANPEDCAGFGKGENAKKFLRTDEKV 60

Query: 70  ERTRRAHANDLENIPFFFTAAFAYMCTSPGPWLAQTLFLVYAVSRIVYTVVYAVVVMPQP 129
           ER RRAH NDLENI  F      Y  + P    A   F ++  +RI +T+ Y +  +PQP
Sbjct: 61  ERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAY-LTPLPQP 119

Query: 130 TRAIVWSVGYIINIYMAVQ 148
            R + + VGY + + MA +
Sbjct: 120 NRGLAFFVGYGVTLSMAYR 138


>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 146

 Score = 60.6 bits (147), Expect = 4e-13
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 66  DPDVERTRRAHANDLENIPFFFTAAFAYMCTSPGPWLAQTLFLVYAVSRIVYTVVYAVVV 125
            P+ ER  RA  N  E  P F    +           A    LVY  +R+ Y   YA   
Sbjct: 42  PPEFERVYRAQVNCSEYFPLFLATLWVAGIFFHEGAAA-LCGLVYLFARLRYFQGYARSA 100

Query: 126 MPQPTRAIVWSVGYIINIYMAVQAALYFY 154
             +       +    + + +A    L  +
Sbjct: 101 QLRLAPLYASARALWLLVALAALGLLAHF 129


>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating
           protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 1/89 (1%)

Query: 66  DPDVERTRRAHANDLENIPFFFTAAFAYMCTSPGPWLAQTLFLVYAVSRIVYTVVYAVVV 125
               ER   A+ N ++  P F    ++          A    L+Y   R  Y V Y    
Sbjct: 47  TLAFERVYTANQNCVDAYPTFLAVLWS-AGLLCSQVPAAFAGLMYLFVRQKYFVGYLGER 105

Query: 126 MPQPTRAIVWSVGYIINIYMAVQAALYFY 154
                  I      +    M+V     +Y
Sbjct: 106 TQSTPGYIFGKRIILFLFLMSVAGIFNYY 134


>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 143

 Score = 26.0 bits (57), Expect = 1.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 36 LLTARQRFRKRVFISPEDTVL 56
          L   R + RK+V+I+  D +L
Sbjct: 57 LCHIRGKLRKKVWINTSDIIL 77


>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
          {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 102

 Score = 25.0 bits (55), Expect = 2.3
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 40 RQRFRKRVFISPEDTVL 56
            R + R+++   D V+
Sbjct: 50 PGRLKNRIWVREGDVVI 66


>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 115

 Score = 23.6 bits (51), Expect = 9.3
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 33  FSSLLTARQRFRKRVFISPEDTVLARGAKCIKDDPDVERTRRAHAN-DLENIPFFFTAAF 91
           F   +   +R+ +R  I      + +G +    DP V+  R   AN  L+N+  F     
Sbjct: 43  FLETVKNARRWTRRTVIDVAKGEVRKGEEFFVVDP-VDEKRNVAANLSLDNLARFVHLCR 101

Query: 92  AYM 94
            +M
Sbjct: 102 EFM 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 576,953
Number of extensions: 25133
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 8
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (22.8 bits)