BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17466
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7PR68|MED7_ANOGA Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles
gambiae GN=MED7 PE=3 SV=2
Length = 219
Score = 293 bits (751), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 143/212 (67%), Positives = 167/212 (78%)
Query: 7 QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIK 66
QVSSLPLPP QYIN YTDE IR+ RAPKPP PI D+Y+MFG+ F+ DD IIRPLESQG K
Sbjct: 8 QVSSLPLPPAQYINLYTDENIRKNRAPKPPAPIQDAYTMFGSPFSNDDNIIRPLESQGFK 67
Query: 67 RLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNE 126
RLYPQHFDRR+EL+KLNHSLLVNFLDLIDLLV PDSPRR EK+ED+SLLF+HIHHLLNE
Sbjct: 68 RLYPQHFDRRKELKKLNHSLLVNFLDLIDLLVHYPDSPRRAEKIEDLSLLFVHIHHLLNE 127
Query: 127 FRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTD 186
FRPHQARETLRVMMELQ+RQR ET+QRF HL++V +++ A +LPD +L +
Sbjct: 128 FRPHQARETLRVMMELQKRQRIETAQRFQNHLEKVREMVKNAFASLPDLTDADRLAGGLE 187
Query: 187 DFNSNDSNRKDDASVDGVNPYDRLMCELVDNM 218
+ +S +G +P DRLMCELVD M
Sbjct: 188 PMDVGESGDLAGGRGEGCHPLDRLMCELVDRM 219
>sp|Q17MI0|MED7_AEDAE Mediator of RNA polymerase II transcription subunit 7 OS=Aedes
aegypti GN=MED7 PE=3 SV=1
Length = 219
Score = 287 bits (734), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 136/212 (64%), Positives = 163/212 (76%)
Query: 7 QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIK 66
QVSS PLPP QY YTDE +R RAPKPP PI +Y MFG QF+ +D IIRPLE+QG K
Sbjct: 8 QVSSFPLPPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFK 67
Query: 67 RLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNE 126
RLYPQHFDRR+EL+KLNHSLLVNFLDLIDLLV PDSP+R EK+ED++LLF+HIHHLLNE
Sbjct: 68 RLYPQHFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNE 127
Query: 127 FRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTD 186
FRPHQARETLRVMMELQ+RQR ET+QRF HL++V +++N A +LPD +L +
Sbjct: 128 FRPHQARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASLPDPAESDRLNSTVE 187
Query: 187 DFNSNDSNRKDDASVDGVNPYDRLMCELVDNM 218
++ D + +G +P DRLMCELVD M
Sbjct: 188 PMDTGDDGEAGKSRGEGCHPLDRLMCELVDKM 219
>sp|Q7ZV35|MED7_DANRE Mediator of RNA polymerase II transcription subunit 7 OS=Danio
rerio GN=med7 PE=2 SV=1
Length = 241
Score = 246 bits (627), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/228 (53%), Positives = 163/228 (71%), Gaps = 5/228 (2%)
Query: 1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
M PQ QVS+LP PP+QYI YTDE +R+G APKPP PI DSY MFGNQF DD IIRPL
Sbjct: 1 MGEPQ-QVSALPPPPMQYIKEYTDENVRKGLAPKPPPPIRDSYMMFGNQFQCDDLIIRPL 59
Query: 61 ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
ESQGI+RL+P FD +REL+KLN S+LVNFLDL+D+L++ P S +R EK+ED+ LLF+H+
Sbjct: 60 ESQGIERLHPMQFDHKRELKKLNMSILVNFLDLLDILIKSPGSIKREEKLEDLKLLFVHM 119
Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF HL+RV +++ + +LPD DL
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQGCLSSLPD-DLPLP 178
Query: 178 DSKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
+S + + + + VD V ++ + N+P+ DG
Sbjct: 179 NSSSMGEAGSAAGSSRLKTEPMDVDDVAGASCMVLQTDKNVPVKKDGV 226
>sp|Q6GPR9|MED7B_XENLA Mediator of RNA polymerase II transcription subunit 7-B OS=Xenopus
laevis GN=med7-b PE=2 SV=1
Length = 228
Score = 244 bits (623), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 114/174 (65%), Positives = 145/174 (83%), Gaps = 1/174 (0%)
Query: 1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
M PQ QVS+LP+PP+QYI YTDE IR+G APKPPLPI+DSY MFGNQF DD IIRPL
Sbjct: 1 MGEPQ-QVSALPIPPMQYIKEYTDENIRKGLAPKPPLPINDSYMMFGNQFQCDDLIIRPL 59
Query: 61 ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
E+QGI+RL+P FD ++ELRKL S+LVNFLD++D+L++ P S RR EK+EDI LLF+H+
Sbjct: 60 ETQGIERLHPVQFDHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDIKLLFVHM 119
Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPD 174
HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF HL+RV +++ + +LPD
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASLPD 173
>sp|Q3T123|MED7_BOVIN Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus
GN=MED7 PE=2 SV=1
Length = 233
Score = 244 bits (622), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 124/231 (53%), Positives = 170/231 (73%), Gaps = 15/231 (6%)
Query: 1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
M PQ QVS+LP PP+QYI YTDE I+ G APKPP PI DSY MFGNQF DD IIRPL
Sbjct: 1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59
Query: 61 ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
ESQGI+RL+P FD ++ELRKLN S+L+NFLDL+D+L++ P S +R EK+ED+ LLF+H+
Sbjct: 60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119
Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF HL+RV +++ + +LPD DL
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178
Query: 178 DSKLLINTDDFNSNDSN--------RKDDAS--VDGVNPYDRLMCELVDNM 218
++ + + T+ +++DSN +++++ D + D +C L+D M
Sbjct: 179 EAGMRVKTEPMDTDDSNNCIGQNEQQRENSGHRRDQIIEKDAALCVLIDEM 229
>sp|O43513|MED7_HUMAN Mediator of RNA polymerase II transcription subunit 7 OS=Homo
sapiens GN=MED7 PE=1 SV=1
Length = 233
Score = 243 bits (621), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/231 (53%), Positives = 170/231 (73%), Gaps = 15/231 (6%)
Query: 1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
M PQ QVS+LP PP+QYI YTDE I+ G APKPP PI DSY MFGNQF DD IIRPL
Sbjct: 1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59
Query: 61 ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
ESQGI+RL+P FD ++ELRKLN S+L+NFLDL+D+L++ P S +R EK+ED+ LLF+H+
Sbjct: 60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119
Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF HL+RV +++ + +LPD DL
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178
Query: 178 DSKLLINTDDFNSNDSN--------RKDDAS--VDGVNPYDRLMCELVDNM 218
++ + + T+ +++DSN +++++ D + D +C L+D M
Sbjct: 179 EAGMRVKTEPMDADDSNNCTGQNEHQRENSGHRRDQIIEKDAALCVLIDEM 229
>sp|Q2F7Z4|MED7_PIG Mediator of RNA polymerase II transcription subunit 7 OS=Sus scrofa
GN=MED7 PE=2 SV=2
Length = 233
Score = 243 bits (620), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 124/231 (53%), Positives = 165/231 (71%), Gaps = 15/231 (6%)
Query: 1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
M PQ QVS+LP PP+QYI YTDE I+ G APKPP PI DSY MFGNQF DD IIRPL
Sbjct: 1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59
Query: 61 ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
ESQGI+RL+P FD ++ELRKLN S+L+NFLDL+D+L++ P S +R EK+ED+ LLF+H+
Sbjct: 60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119
Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF HL+RV +++ + +LPD DL
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178
Query: 178 DSKLLINTDDFNSNDSNRKDDAS----------VDGVNPYDRLMCELVDNM 218
++ + + + +++DSN S D + D +C L+D M
Sbjct: 179 EAGMRVKAEPMDADDSNNCTGQSDQQRENSGHRRDQIIEKDAALCVLIDEM 229
>sp|Q5BJ48|MED7_XENTR Mediator of RNA polymerase II transcription subunit 7 OS=Xenopus
tropicalis GN=med7 PE=2 SV=1
Length = 229
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 163/230 (70%), Gaps = 14/230 (6%)
Query: 1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
M PQ QVS+LP+PP+QYI YTDE IR+G APKPPLPI DSY MFGNQF DD IIRPL
Sbjct: 1 MGEPQ-QVSALPIPPMQYIKEYTDENIRKGLAPKPPLPIKDSYMMFGNQFQCDDLIIRPL 59
Query: 61 ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
E+QGI+RL+P FD ++ELRKL S+LVNFLD++D+L++ P S RR EK+ED+ LLF+H+
Sbjct: 60 ETQGIERLHPMQFDHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDLKLLFVHM 119
Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF HL+RV +++ + +LP+ DL
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASLPN-DLPLS 178
Query: 178 DSKLLINTD---------DFNSNDSNRKDDASVDGVNPYDRLMCELVDNM 218
D + + T+ D ++ + + D MC ++D M
Sbjct: 179 DGAVSVKTEPMDVREPCTDHHAGPQEAAAASLKETTIDKDAAMCVIIDEM 228
>sp|Q3B8I4|MED7A_XENLA Mediator of RNA polymerase II transcription subunit 7-A OS=Xenopus
laevis GN=med7-a PE=2 SV=1
Length = 228
Score = 241 bits (616), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/229 (53%), Positives = 162/229 (70%), Gaps = 13/229 (5%)
Query: 1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
M PQ QVS+LP+PP+QYI YTDE IR+ APKPP+PI DSY MFGNQF DD IIRPL
Sbjct: 1 MGEPQ-QVSALPIPPMQYIKEYTDENIRKSLAPKPPVPIKDSYMMFGNQFQCDDLIIRPL 59
Query: 61 ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
E+QGI+RL+P FD ++ELRKL S+LVNFLD++D+L++ P S RR EK+ED+ LLF+H+
Sbjct: 60 ETQGIERLHPVQFDHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDLKLLFVHM 119
Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF HL+RV +++ + +LPD DL
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASLPD-DLPLP 178
Query: 178 DSKLLINTDDFN----SNDSNRKDDASVDGVNPY----DRLMCELVDNM 218
D + + T+ + D + + V D MC ++D M
Sbjct: 179 DGTVSVKTEPMDVQEPCTDHHEGPQGAAASVKEATIDKDAAMCGIIDEM 227
>sp|Q9CZB6|MED7_MOUSE Mediator of RNA polymerase II transcription subunit 7 OS=Mus
musculus GN=Med7 PE=2 SV=2
Length = 233
Score = 239 bits (610), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 161/230 (70%), Gaps = 13/230 (5%)
Query: 1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
M PQ QVS+LP PP+QYI YTDE I+ G APKPP PI DSY MFGNQF DD IIRPL
Sbjct: 1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59
Query: 61 ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
ESQGI+RL+P FD ++ELRKLN S+L+NFLDL+D+L++ P S +R EK+ED+ LLF+H+
Sbjct: 60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119
Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPD------ 174
HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF HL+RV +++ + +LPD
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPDDLPHSE 179
Query: 175 --TDLDSKLLINTDDFNSNDSNRKDDASV----DGVNPYDRLMCELVDNM 218
+ ++ + D+ N N + S D + D +C L+D M
Sbjct: 180 AGMRVKAEPMDTDDNSNCPGQNEQQRESSGHRRDQIIEKDAALCVLIDEM 229
>sp|Q9GYV9|MED7_DROME Mediator of RNA polymerase II transcription subunit 7 OS=Drosophila
melanogaster GN=MED7 PE=1 SV=1
Length = 220
Score = 231 bits (590), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/223 (60%), Positives = 166/223 (74%), Gaps = 13/223 (5%)
Query: 1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPI--HDSYSMFGNQFNADDTIIR 58
MS + QVSSLP+PP +YI NYTDE IRR RAP+PP P H+ YSMFG Q+N +D +IR
Sbjct: 1 MSNQETQVSSLPMPPERYIANYTDENIRRNRAPRPPPPPAQHEVYSMFGIQYN-NDEMIR 59
Query: 59 PLESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFI 118
LESQ IKRL P HFDRR+EL+KLNHSLLVNFLDLID L+ PDSPRRTEK++DISLLF+
Sbjct: 60 SLESQNIKRLIPIHFDRRKELKKLNHSLLVNFLDLIDFLILNPDSPRRTEKIDDISLLFV 119
Query: 119 HIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLD 178
++HHLLNEFRPHQARETLRVMME+Q+RQR ET+ RF HL+RV +I+N A LP D D
Sbjct: 120 NMHHLLNEFRPHQARETLRVMMEMQKRQRVETAARFQKHLERVREIVNTAFSALPVLDDD 179
Query: 179 -----SKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVD 216
+K+ D +N + + D + +DR++C+LVD
Sbjct: 180 DDSGGAKIKTEVDPLEANAAAKNDPSY-----QHDRMLCKLVD 217
>sp|Q95Q17|MED7_CAEEL Mediator of RNA polymerase II transcription subunit 7
OS=Caenorhabditis elegans GN=let-49 PE=1 SV=1
Length = 251
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Query: 6 EQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGI 65
+ VS P PP +Y + YT + I G AP PP P+ + + ++G ++ +D +I PL++ G+
Sbjct: 8 QTVSPFPNPP-EYASAYTSDRINNGSAPPPPHPLTE-FKVYGEEYRLEDDVIAPLKNAGV 65
Query: 66 KRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLN 125
LY + + E++KLN S +V F DL+++L++ PD P R EK+ D+ +FI++HHL+N
Sbjct: 66 AELYKNKNNWKTEMKKLNRSAIVAFFDLVEILIRAPDHPMREEKMVDLHTIFINMHHLIN 125
Query: 126 EFRPHQARETLRVMMELQRRQRNETSQRFHVHL 158
EFRP QAR+++R++ E Q + ++ + F +L
Sbjct: 126 EFRPVQARDSVRILQERQIEELSDICKDFKKYL 158
>sp|Q60V43|MED7_CAEBR Mediator of RNA polymerase II transcription subunit 7
OS=Caenorhabditis briggsae GN=let-49 PE=3 SV=1
Length = 258
Score = 110 bits (275), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 6 EQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGI 65
+ VS P PP +Y + YT + I G AP PP P+ + + +FG ++ ++ +I PL + G+
Sbjct: 9 QTVSPFPNPP-EYASAYTSDRIDNGSAPPPPHPLTE-FKVFGEEYRLEEDVIAPLSTAGV 66
Query: 66 KRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLN 125
++ Y + + E++KLN + F DL+++L++ PD P R +K+ D+ +FI++HHL+N
Sbjct: 67 EQYYVDKNNWKAEMKKLNRXIGA-FFDLLEVLIRAPDHPARDKKMVDLHTIFINMHHLIN 125
Query: 126 EFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQIL 165
EFRP QAR+++R++ E Q + E F +L +++
Sbjct: 126 EFRPVQARDSVRILQERQIDELTEICDDFREYLAHGREVV 165
>sp|Q55DQ5|MED7_DICDI Putative mediator of RNA polymerase II transcription subunit 7
OS=Dictyostelium discoideum GN=med7 PE=3 SV=1
Length = 345
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 26/198 (13%)
Query: 39 IHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQH-FDRRRELRKLNHSLLVNFLDLIDLL 97
+ +Y FG ++ D ++ L+ G K+LYP+ + EL+KLN S+L N+L L++ L
Sbjct: 150 VGANYVQFGQTYSTVD-MLPSLDESGAKQLYPKGDIEPISELKKLNRSILFNYLQLLETL 208
Query: 98 VQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVH 157
++ P + + K+EDISLLFI+ HHLLN +RPHQARETL +M Q +Q+N++++
Sbjct: 209 IENPKNYQS--KIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKNQSNESIKKA 266
Query: 158 LDRVNQILNQAIENL--PDTDLDSKL------------------LINTDDFNSNDSNRKD 197
LD + L + +NL D +DS L N+ D N N++N D
Sbjct: 267 LDICKESLMNSFKNLNIEDKQIDSATPLPTNITSPTKNLMSPTKLNNSQDVNMNENN--D 324
Query: 198 DASVDGVNPYDRLMCELV 215
D +N D+L+ E++
Sbjct: 325 DDEDKEINWMDQLLDEML 342
>sp|Q9LZD7|MED7B_ARATH Mediator of RNA polymerase II transcription subunit 7b
OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1
Length = 168
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Query: 32 APKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQ--HFDRRRELRKLNHSLLVN 89
AP+PP PI +Y FG + +D ++ LE QG+ +LYP+ + D ++ELR LN L ++
Sbjct: 26 APEPPPPIEGTYVCFGGNYTTED-VLPSLEEQGVPQLYPKDSNLDYKKELRSLNRELQLH 84
Query: 90 FLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNE 149
L+L D+LV P + +++ +IS +F ++HHLLN RPHQAR TL +MELQ +QR +
Sbjct: 85 ILELADVLVDRPS--QYAKRIGEISSIFKNLHHLLNSLRPHQARATLIHIMELQIQQRKQ 142
Query: 150 TSQRFHVHLDRVNQILNQAIENL 172
+ + +L A L
Sbjct: 143 AVEDIKRRREEAQGLLKDAFVTL 165
>sp|Q9LYW3|MED7A_ARATH Mediator of RNA polymerase II transcription subunit 7a
OS=Arabidopsis thaliana GN=MED7A PE=1 SV=1
Length = 168
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Query: 39 IHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQ--HFDRRRELRKLNHSLLVNFLDLIDL 96
I +Y FG + +D ++ LE QG+ +LYP+ + D + ELR LN L ++ L+L D+
Sbjct: 33 IEGTYVCFGGNYTTED-VLPSLEEQGVPQLYPKDSNLDYKNELRSLNRELQLHILELADV 91
Query: 97 LVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHV 156
LV P + +++ +IS +F ++HHLLN RPHQAR TL +MELQ +QR + +
Sbjct: 92 LVDRPS--QYAKRIGEISSIFKNLHHLLNSLRPHQARATLIHIMELQIQQRKQAVEDIKR 149
Query: 157 HLDRVNQILNQA 168
+ ++L A
Sbjct: 150 RREEAQRLLKDA 161
>sp|Q2UHU3|MED7_ASPOR Mediator of RNA polymerase II transcription subunit 7
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=med7 PE=3 SV=1
Length = 261
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 30/200 (15%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQ--HFDRRRE-----LRKLNHSLL 87
P +P YS+FG + + T + L+ QGI +LYP D RE + LNH+
Sbjct: 71 PEIPKSGHYSVFG-ELQSLSTALPSLQDQGITQLYPSPPTGDADREQPSEPSQPLNHAYY 129
Query: 88 V---------NFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRV 138
+ NFL+ + +L P+ + KVED+ LFI+ HHLLN +RPHQARE+L +
Sbjct: 130 LLKISKSLLLNFLEFVGILSVAPE--QFESKVEDLRNLFINAHHLLNLYRPHQARESLIL 187
Query: 139 MMELQ-RRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLL-INTDDFNSNDSNRK 196
MME Q R R E Q +D++ + + A+E L +D I D ++ N
Sbjct: 188 MMEEQLSRTREEIQQ-----MDKLKEEITGALEQLKKDGVDVDAAPIEAPDNDTKKPNVS 242
Query: 197 DDASVDGVNPYDRLMCELVD 216
++ +++ RL+ EL+D
Sbjct: 243 EEKAIEDT----RLVWELLD 258
>sp|A1DN59|MED7_NEOFI Mediator of RNA polymerase II transcription subunit 7
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=med7 PE=3 SV=1
Length = 261
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 28/200 (14%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDR------RRELRKLNHSLLV 88
P +P+ YS+FG + + T + L+ QGI++LYP + R NH+ +
Sbjct: 71 PEIPMSGQYSVFG-ELQSLSTTLPSLQEQGIEQLYPSTPTETDPNKPSQPSRPFNHAYYL 129
Query: 89 ---------NFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVM 139
NFL+ + +L P+ + KVED+ LFI+ HHLLN +RPHQARE+L +M
Sbjct: 130 LKISKSLLLNFLEFVGILSITPE--QFQSKVEDLRNLFINAHHLLNLYRPHQARESLIMM 187
Query: 140 MELQ-RRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDDFNSNDSNRKDD 198
ME Q R R E Q +H + +N L Q D D SK ND+ ++
Sbjct: 188 MEEQLNRSREEIQQMDKMHAE-INGFLEQLKAQGIDVDSASK-------SGENDTAKRTT 239
Query: 199 ASVDGVNP-YDRLMCELVDN 217
D N RL+ +++D
Sbjct: 240 GDQDANNANSSRLVWDILDG 259
>sp|Q5BBF7|MED7_EMENI Mediator of RNA polymerase II transcription subunit 7 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=med7 PE=3 SV=1
Length = 259
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 87/170 (51%), Gaps = 23/170 (13%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYP-------QHFDRRRELRKLNHSLL 87
PP + YS+FG N T + LE QGI +LYP + D + + LNH+
Sbjct: 69 PPEIPSEQYSIFGEVQNLS-TALPSLEEQGITQLYPSSPKPDTKSGDSSQPAQPLNHAYY 127
Query: 88 V---------NFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRV 138
+ NFL+ + +L P+ + KVEDI LFI+ HHLLN +RPHQARE+L +
Sbjct: 128 LLKISKSLLLNFLEFVGILSVAPE--QFEPKVEDIRNLFINAHHLLNLYRPHQARESLIM 185
Query: 139 MMELQRRQRNETSQRFHVHLDRVNQILNQ-AIENLPDTDLDSKLLINTDD 187
MME Q + + Q+ + VN +L+Q A E D+ S + T D
Sbjct: 186 MMEAQLARTKDEIQQMDKLKEEVNAVLDQLAAEG---ADVGSTIQSTTKD 232
>sp|A1CT75|MED7_ASPCL Mediator of RNA polymerase II transcription subunit 7
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=med7 PE=3 SV=1
Length = 260
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 94/186 (50%), Gaps = 22/186 (11%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQ---HFDRR---RELRKLNHSLLV 88
P +P YS+FG + + T + L+ QGI++LYP DR + R NH+ +
Sbjct: 72 PEIPTKGHYSVFG-ELQSLSTALPSLQEQGIEQLYPSPPTETDREAPSQPSRPFNHAYYL 130
Query: 89 ---------NFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVM 139
NFL+ + +L P+ + KVED+ LFI+ HHLLN +RPHQARE+L +M
Sbjct: 131 LKISKSLLLNFLEFVGVLSVAPE--QFQAKVEDLRNLFINAHHLLNLYRPHQARESLIMM 188
Query: 140 MELQ-RRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDDFNSNDSNRKDD 198
ME Q +R R E Q +H + + L+Q D+DS + +D++ K
Sbjct: 189 MEEQLKRSREEIEQMDKLHTE-IKGFLDQLKAQ--GVDVDSAAESVSKATKKDDTSNKRA 245
Query: 199 ASVDGV 204
A G+
Sbjct: 246 AEDSGL 251
>sp|Q0CK31|MED7_ASPTN Mediator of RNA polymerase II transcription subunit 7
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=med7 PE=3 SV=1
Length = 259
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 31/200 (15%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQH------FDRRRELRKLNHSLLV 88
P +P YS+FG + + T + L+ QGI++LYP D + LNH+ +
Sbjct: 72 PEVPTEGHYSVFG-ELQSLSTALPSLKDQGIEQLYPSSPAAESGRDTSEPSKPLNHAYYL 130
Query: 89 ---------NFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVM 139
NFL+ + +L CP+ + KV D+ LFI+ HHLLN +RPHQARE+L +M
Sbjct: 131 LKISKSLLLNFLEFVGVLSICPE--QFESKVNDLRNLFINAHHLLNLYRPHQARESLIMM 188
Query: 140 MELQRRQRNETSQRFHVHLDRVNQILNQAIENL--PDTDLDSKLLINTDDFNSNDSNRKD 197
ME Q Q E Q+ +D++ + A++ L D+DS + K
Sbjct: 189 MEEQLSQSREEIQQ----MDKLKAEITDALDRLRRQGVDVDSAA-------GAAVQEEKP 237
Query: 198 DASVDGVNPYDRLMCELVDN 217
+ ++ + RL+ +L+D
Sbjct: 238 TTAEAQISDHSRLVWDLLDG 257
>sp|Q1E7S5|MED7_COCIM Mediator of RNA polymerase II transcription subunit 7
OS=Coccidioides immitis (strain RS) GN=MED7 PE=3 SV=1
Length = 256
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 74/140 (52%), Gaps = 19/140 (13%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLV------ 88
P LP SYS+FG + + T + LE QGI++LYP +H+ +
Sbjct: 68 PELPKEGSYSLFG-EAQSLSTQLPSLEEQGIEQLYPSSLTNETAGPSPDHAYYLLKISKS 126
Query: 89 ---NFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRR 145
NFL+L+ +L P+ + K+EDI LFI+ HHLLN +RPHQ+RE+L MME Q
Sbjct: 127 LLLNFLELVGILSINPE--QYEPKIEDIRNLFINAHHLLNLYRPHQSRESLITMMEEQLE 184
Query: 146 QRNE-------TSQRFHVHL 158
Q E T +R ++L
Sbjct: 185 QAKEEIREMEQTKERVEIYL 204
>sp|Q4WMG1|MED7_ASPFU Mediator of RNA polymerase II transcription subunit 7
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=med7 PE=3 SV=1
Length = 261
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDR------RRELRKLNHSLLV 88
P +P YS+FG + + T + L+ QGI++LYP + R NH+ +
Sbjct: 71 PEIPKSGQYSVFG-ELQSLSTTLPSLQEQGIEQLYPSTPTETDPDKPSQPSRPFNHAYYL 129
Query: 89 ---------NFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVM 139
NFL+ + +L P+ + KVED+ LFI+ HHLLN +RPHQARE+L +M
Sbjct: 130 LKISKSLLLNFLEFVGILSIAPE--QFQSKVEDLRNLFINAHHLLNLYRPHQARESLIMM 187
Query: 140 MELQ-RRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDDFNSNDSNRKDD 198
ME Q R R E Q +H + +N L Q D D SK + +D + + D
Sbjct: 188 MEEQLNRSREEIQQMDKMHAE-INGFLEQLKAQGIDIDSASK---SREDVTAKRATGDQD 243
Query: 199 ASVDGVNPYDRLMCELVDN 217
A+ + RL+ +++D
Sbjct: 244 ANNANSS---RLVWDILDG 259
>sp|Q6CP69|MED7_KLULA Mediator of RNA polymerase II transcription subunit 7
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MED7 PE=3
SV=1
Length = 213
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 30/161 (18%)
Query: 34 KPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLY--------------------PQ-- 71
KP LP SY FGN + D + L GI++LY PQ
Sbjct: 55 KPELPRDGSYRAFGNVWKIKDEL-PELSQMGIEQLYRKRESVTELENGTTTEVEPSPQDS 113
Query: 72 -----HFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNE 126
+ ++ +E +KL SLL+NFL+LI +L DS R +K+++I ++ I+IHHLLNE
Sbjct: 114 QSGTNYENKIQESKKLMKSLLLNFLELIGIL--GVDSSRYEKKLDEIRVIAINIHHLLNE 171
Query: 127 FRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQ 167
+RPHQ+RE+L ++ E Q + + + + D V L Q
Sbjct: 172 YRPHQSRESLIMLFEEQLEHKRKEMEHINKVCDEVESKLAQ 212
>sp|A2QWI7|MED7_ASPNC Mediator of RNA polymerase II transcription subunit 7
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=med7 PE=3 SV=1
Length = 263
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 23/154 (14%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQH----FDRR---RELRKLNHSLL 87
P +P YS+FG N T + L+ QGI +LYP DR+ R LNH+
Sbjct: 72 PAIPDTGHYSVFGELQNLS-TALPSLKDQGITQLYPSSSPADTDRQSPSEPSRPLNHAYY 130
Query: 88 V---------NFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRV 138
+ NFL+ + +L P+ + KVED+ LFI+ HHLLN +RPHQARE+L +
Sbjct: 131 LLKISKSLLLNFLEFVGVLSVSPE--QFESKVEDLRNLFINAHHLLNLYRPHQARESLIM 188
Query: 139 MMELQRRQRNETSQRFHVHLDRVNQILNQAIENL 172
MME Q + E Q+ +D++ + +E L
Sbjct: 189 MMEEQLSRTKEEIQQ----MDKLKAEITGVLERL 218
>sp|Q6FVI8|MED7_CANGA Mediator of RNA polymerase II transcription subunit 7 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MED7 PE=3 SV=1
Length = 230
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 15/145 (10%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRP-LESQGIKRLYPQHFDRRRELRKLNHSL------- 86
PP+P SY FG+ + D + P LE+ GI +LY + + E+ + +
Sbjct: 58 PPMPSSGSYRAFGSVWQIKDHL--PDLETMGITQLYKKTSEGEAEVTDYQYKIKELRRLS 115
Query: 87 ---LVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQ 143
L+NF++L+ +L P+ KVE+I + ++IHHLLNE+RPHQ+RE+L +++E Q
Sbjct: 116 YSLLLNFVELVGVLSVNPE--LYESKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQ 173
Query: 144 RRQRNETSQRFHVHLDRVNQILNQA 168
+ + + +V + L Q
Sbjct: 174 LEHKKQEVANIELVCQQVTEKLKQV 198
>sp|A3LZW1|MED7_PICST Mediator of RNA polymerase II transcription subunit 7
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=MED7 PE=3 SV=2
Length = 257
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 11/117 (9%)
Query: 33 PKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFD------RRRELRKLNHSL 86
P+PP H Y +GN ++ +D + L+S ++LY + + +EL KL SL
Sbjct: 79 PQPPSGTH--YRGYGNIWSFEDKL-PSLKSANWEQLYKDDDESITSETKIKELHKLMDSL 135
Query: 87 LVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQ 143
L+NFL+LI L D + K++DISL+ I+I+HLLN +RPHQ+RE+L +++ Q
Sbjct: 136 LLNFLELIGL--ASIDPSQYESKIKDISLILININHLLNTYRPHQSRESLIMLLRKQ 190
>sp|Q6BKZ4|MED7_DEBHA Mediator of RNA polymerase II transcription subunit 7
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=MED7 PE=3 SV=2
Length = 244
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 15/148 (10%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFD------RRRELRKLNHSLLV 88
P P D Y FGN ++ +D + L+ G +LY + + EL KL SLL+
Sbjct: 70 PKQPDADHYRGFGNLWSFEDKL-PGLKESGWTQLYKDDDELITSNTKIDELHKLMDSLLL 128
Query: 89 NFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQ-RRQR 147
NFL+LI V D + K+ED+ L+ I+I+H+LN +RPHQ+RE+L +++ Q +R
Sbjct: 129 NFLELIG--VVSIDPQQFHYKIEDLKLILININHILNTYRPHQSRESLIMLLRKQIDMKR 186
Query: 148 NETSQRFHVHLDRVNQILNQAIENLPDT 175
NE S+ +D+ ++ + I L DT
Sbjct: 187 NEISE-----IDKTSEDIKSKILKLVDT 209
>sp|Q0U6Z7|MED7_PHANO Mediator of RNA polymerase II transcription subunit 7
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=MED7 PE=3 SV=1
Length = 276
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 34/208 (16%)
Query: 33 PKPPLPIHDSYSMFG--NQFNADDTIIRPLE--SQGIKRLYPQH---------------- 72
P+PP + +++FG NQ DT +E SQ + +L P
Sbjct: 78 PEPPADTEE-FNVFGTINQLKDRDTFNGTMEYISQALAKLLPDWKYEQLYPTTDASNSAS 136
Query: 73 --FDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPH 130
DR+R L + S+LV +++L+ ++ P + +K++DI + ++H L+NE+RPH
Sbjct: 137 STLDRQRYLFRFLRSILVAYIELLGIVAINPTDELKDDKLKDILTMVTNMHALINEYRPH 196
Query: 131 QARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDDFNS 190
QARETL ME Q ++ Q +RV ++L +P + + + +
Sbjct: 197 QARETLISEMERQVEKKKMEIQGVRKMKERVGEVLEGFGREIPSEKAEDR---TEEAAVT 253
Query: 191 NDSNRKDDASVDGVNPYDRLMCELVDNM 218
++ RK DA R M + +D M
Sbjct: 254 SEEERKRDAQ--------RQMWQAMDEM 273
>sp|Q2GRJ3|MED7_CHAGB Mediator of RNA polymerase II transcription subunit 7 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=MED7 PE=3 SV=1
Length = 263
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 12/126 (9%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYP--------QHFDRRRELRKLNHSL 86
PP P ++++F + ++ LE GI+RL P +H DR +L+KL SL
Sbjct: 71 PPEPTEGTWTLF-TETQTLTETLQSLEEAGIQRLGPTSDIDRDSKHLDRGFQLKKLVKSL 129
Query: 87 LVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQ 146
L+N+L+L+ L+ PD EK+ED+ +L ++ HH LNE+RPH ARE L +M Q
Sbjct: 130 LLNYLELVGLMGYNPD--HAAEKIEDLKILLLNFHHTLNEYRPHHAREQLIQIMHAHGDQ 187
Query: 147 -RNETS 151
R ET+
Sbjct: 188 MRAETA 193
>sp|Q08278|MED7_YEAST Mediator of RNA polymerase II transcription subunit 7
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MED7 PE=1 SV=1
Length = 222
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 74/117 (63%), Gaps = 11/117 (9%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFD--------RRRELRKLNHSL 86
PP+P + Y FG+ + D + LES G+ +LY + + + +ELRKL SL
Sbjct: 68 PPMPKNQQYRAFGSIWQVKDQL-PDLESMGLTQLYKKSTENESTNYQYKIQELRKLLKSL 126
Query: 87 LVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQ 143
L+N+L+LI +L PD R KVE+I + ++IHHLLNE+RPHQ+RE+L +++E Q
Sbjct: 127 LLNYLELIGVLSINPDMYER--KVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQ 181
>sp|Q5AEN6|MED7_CANAL Mediator of RNA polymerase II transcription subunit 7 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MED7 PE=3
SV=1
Length = 304
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 61/89 (68%), Gaps = 9/89 (10%)
Query: 75 RRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARE 134
+ +EL KL SLL+NFL+LI +L D + +K+ DI+L+ I+I+HLLN +RPHQ+RE
Sbjct: 164 KIKELHKLMDSLLLNFLELIGIL--SIDPIKYDKKIHDINLILININHLLNTYRPHQSRE 221
Query: 135 TLRVMMELQRRQRNETSQRFHVHLDRVNQ 163
+L +++ +N+ +F + +D++N+
Sbjct: 222 SLIMLL------KNQIDYKF-LEIDQINK 243
>sp|Q75AV2|MED7_ASHGO Mediator of RNA polymerase II transcription subunit 7 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=MED7 PE=3 SV=1
Length = 199
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 35 PPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLVNFL--- 91
PP+P Y FG+ + D + LE+ G++ LY DR + + +
Sbjct: 54 PPVPSAGHYRAFGSVWQVKDEL-PDLETVGLRNLYD---DRGQHGNNYQYKIKELHKLLK 109
Query: 92 -------DLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQR 144
+L+ +L P+ R +KVE I + +IHHLLNE+RPHQ+RE+L +++E Q
Sbjct: 110 SLLLNMLELVSVLSVNPE--RFPDKVEHIRTILFNIHHLLNEYRPHQSRESLIMLLEEQL 167
Query: 145 RQRNETSQRFHVHLDRVNQIL 165
+ E H D+V L
Sbjct: 168 EHKKEEIANIHAICDKVQAKL 188
>sp|Q6CE96|MED7_YARLI Mediator of RNA polymerase II transcription subunit 7 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MED7 PE=3 SV=1
Length = 235
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 29/182 (15%)
Query: 6 EQVSSLPLPPVQYINNYTDELIRRGR------------AP----KPPLPIH-DSYSMFGN 48
E + S+ PP Y +TDE + + + AP PP P +Y FG+
Sbjct: 9 EGLLSVYPPPPWYSRYFTDENVAKVKDLQSSDNSQLLEAPLKYLTPPSPPEAGAYHNFGD 68
Query: 49 QFNADDTIIRPLESQGIKRLY---------PQHFDRRRELRKLNHSLLVNFLDLIDLLVQ 99
+ +D + LE GI ++Y + R EL+KL SLL+ F++L ++
Sbjct: 69 VWQVNDKLAT-LEDLGITQVYDGAAIRGEGQESGARVLELKKLTKSLLLAFVELTGIMGV 127
Query: 100 CPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLD 159
P+ + K E + +L I+IHH+LNE+RPHQARE+L +M+ Q + + + D
Sbjct: 128 SPE--QFPAKFEHVRVLLINIHHILNEYRPHQARESLVTLMQQQINDKKQHVENIRQSCD 185
Query: 160 RV 161
+V
Sbjct: 186 KV 187
>sp|O60104|MED7_SCHPO Mediator of RNA polymerase II transcription subunit 7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med7 PE=1 SV=1
Length = 376
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Query: 75 RRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARE 134
R ELR L+ SL++NFL+L+ ++ + P+ + KVE+I +L +++HHL+N++RPHQ+RE
Sbjct: 224 RAYELRFLSRSLMLNFLELLGIMAKAPE--QFPSKVENIRVLLLNLHHLINDYRPHQSRE 281
Query: 135 TLRVMMELQRRQRNETSQRFHVHLDRVNQILNQ 167
+L +++E Q + + H ++ + L +
Sbjct: 282 SLIMLLEKQLKHEESQVELLRTHNRQMTETLEK 314
>sp|Q7S2D4|MED7_NEUCR Mediator of RNA polymerase II transcription subunit 7 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=med-7 PE=3 SV=1
Length = 347
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 102 DSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETL-RVMMELQRRQRNETS 151
D ++K D+ LF++ HH+LNE+RPHQARE L ++M E + R ET+
Sbjct: 200 DPAAGSQKAADLRTLFLNFHHVLNEYRPHQAREQLIQLMQERLDQTRAETA 250
>sp|Q4P2Y1|MED7_USTMA Mediator of RNA polymerase II transcription subunit 7 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=MED7 PE=3 SV=1
Length = 210
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 116 LFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQ 152
+ +++ L+NE RP QA+ETL+++M++Q +R + Q
Sbjct: 144 VVVNMQFLINELRPVQAKETLKLIMQMQLERRKQEMQ 180
>sp|A1XIQ1|POL2_TOTV RNA2 polyprotein OS=Tomato torrado virus (isolate Solanum
lycopersicum/Spain/PRIToTV0301/-) PE=3 SV=1
Length = 1198
Score = 37.0 bits (84), Expect = 0.13, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 135 TLRVMMELQRRQRNETSQRFHVHLDRV---NQILNQAIENLPDTDLDSKLLINTDDFNSN 191
TL+V EL+R + + QRF+ R N++ ++E +P T +K+ + + +S
Sbjct: 451 TLKVRSELERVAKEQARQRFYKEAARAQVKNKVAQTSVEEIPSTSFATKVAMESGSVDSM 510
Query: 192 DSNRKDDASVDGVNPYDRLMCELVDNMPLTNDG 224
+ +A+ + V P + +M E M N+G
Sbjct: 511 KIAIQAEAANEAVRP-NEVMFEFGQEM--NNEG 540
>sp|Q9Y8G8|TOP2_PENCH DNA topoisomerase 2 OS=Penicillium chrysogenum GN=TOP2 PE=3 SV=1
Length = 1587
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 107 TEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILN 166
T ED + F + L EF Q E + + +++ +E ++ +V R L+
Sbjct: 658 TSTTEDAQIYFRDLDRHLKEFHTMQDNEVELIELAFSKKKADE--RKGNVRQFRPGTFLD 715
Query: 167 QAIENLPDTDLDSKLLINTDDFNSNDSNRKDDASVDGVNPYDR 209
+++ + TD +K LI F+ D+ R + VDG+ P R
Sbjct: 716 HSVDKITYTDFINKELIL---FSMADNIRSIPSVVDGLKPGQR 755
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,829,737
Number of Sequences: 539616
Number of extensions: 3756191
Number of successful extensions: 10435
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10321
Number of HSP's gapped (non-prelim): 76
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)