Query psy17466
Match_columns 226
No_of_seqs 132 out of 186
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 23:15:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ykh_A RNA polymerase II media 100.0 1.5E-36 5.2E-41 238.4 10.0 88 77-166 20-107 (108)
2 3fbi_A Mediator of RNA polymer 99.5 2.2E-15 7.7E-20 113.4 0.8 46 5-50 7-84 (84)
3 3nmd_A CGMP dependent protein 87.3 0.5 1.7E-05 34.2 3.4 36 130-165 35-70 (72)
4 1zxa_A CGMP-dependent protein 85.6 1.3 4.3E-05 31.7 4.8 37 131-167 21-57 (67)
5 3msx_B RHO GTPase-activating p 44.1 45 0.0016 26.8 6.0 22 120-142 120-141 (201)
6 3nr7_A DNA-binding protein H-N 36.1 85 0.0029 22.9 5.8 57 122-178 9-74 (86)
7 1q08_A Zn(II)-responsive regul 35.6 66 0.0023 22.7 5.1 51 110-166 19-70 (99)
8 3a8y_C BAG family molecular ch 34.9 1.5E+02 0.0051 23.8 7.4 74 86-159 8-103 (142)
9 4aj5_K Spindle and kinetochore 34.1 1.3E+02 0.0045 23.6 6.8 51 121-171 46-97 (123)
10 3i00_A HIP-I, huntingtin-inter 31.4 98 0.0034 23.9 5.7 62 106-167 13-79 (120)
11 1naf_A ADP-ribosylation factor 31.3 1.9E+02 0.0065 23.3 7.7 54 122-175 24-82 (158)
12 2qyw_A Vesicle transport throu 29.1 59 0.002 24.1 4.0 24 145-168 45-68 (102)
13 3onj_A T-snare VTI1; helix, HA 24.5 2E+02 0.007 20.8 6.2 22 146-167 31-52 (97)
14 1q06_A Transcriptional regulat 23.5 1.7E+02 0.0058 22.2 5.8 31 134-164 78-108 (135)
15 1vcs_A Vesicle transport throu 23.4 60 0.0021 24.0 3.1 46 111-168 12-57 (102)
16 3e98_A GAF domain of unknown f 22.5 95 0.0033 26.5 4.6 36 123-159 53-89 (252)
17 1gmj_A ATPase inhibitor; coile 22.1 2.3E+02 0.0077 20.8 5.9 30 138-167 47-76 (84)
18 2akf_A Coronin-1A; coiled coil 21.6 1.4E+02 0.0048 17.9 4.8 28 139-166 3-30 (32)
19 1use_A VAsp, vasodilator-stimu 21.6 1.3E+02 0.0043 19.7 3.9 24 147-170 13-36 (45)
No 1
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=100.00 E-value=1.5e-36 Score=238.45 Aligned_cols=88 Identities=42% Similarity=0.661 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHhHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 77 RELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHV 156 (226)
Q Consensus 77 ~ELkkL~~SLL~nfLeLl~~L~~~P~~~~~~~ki~di~~L~iNmHHLLNeyRPhQAREtLi~mme~Qi~~r~e~~~~ir~ 156 (226)
.|||||++|||+|||+|+|+|+.+|+. +++||+||++||+|||||||+||||||||||++||++|+++|+++++.+++
T Consensus 20 ~ELkkLn~SlL~nfLeLl~~l~~~P~~--~~~kv~di~~lfiNmHhLlNeyRPhQARetL~~~le~Qi~~kr~e~~~i~~ 97 (108)
T 1ykh_A 20 QELRKLLKSLLLNYLELIGVLSINPDM--YERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIREIEQ 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCCGGG--HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCch--HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999986 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17466 157 HLDRVNQILN 166 (226)
Q Consensus 157 ~~d~~~e~L~ 166 (226)
.|++|+++|+
T Consensus 98 ~~~~~~~~L~ 107 (108)
T 1ykh_A 98 VCKQVHDKLT 107 (108)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 2
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=99.50 E-value=2.2e-15 Score=113.43 Aligned_cols=46 Identities=30% Similarity=0.593 Sum_probs=33.8
Q ss_pred ccccCCCCCCchHhHhhcChhhhhCCC----------------------C----------CCCCCCccccccccCccc
Q psy17466 5 QEQVSSLPLPPVQYINNYTDELIRRGR----------------------A----------PKPPLPIHDSYSMFGNQF 50 (226)
Q Consensus 5 ~~~vss~ppPPp~y~k~ft~en~~~~~----------------------~----------p~PP~P~~g~y~~FG~~~ 50 (226)
...|||+|||||+|||+||++|+++.. . .||++|.+|+|++||+.|
T Consensus 7 ~n~isSlfPpPPPf~K~FT~eNl~kl~e~k~~~~~~~~~~~~~~~~~~~~~~lp~eL~~LiPP~~P~~g~yr~FG~~w 84 (84)
T 3fbi_A 7 GNEVSSLYPPPPPYVKFFTQSNLEKLPKYKEKKAASAKQTAPNNSNGGSEEEITCALDYLIPPPMPKNQQYRAFGSIW 84 (84)
T ss_dssp -----CCSCCCCGGGGGCCHHHHHHHHHHHHHHHC---------------CCCCSGGGGGSCCCCCSSGGGSCSCCCC
T ss_pred ccccccCCCCCCchhhhcCHHHHHHHHHHHHHhcccccccccccccccccCCCCHHHhccCCCCCCCCCCeeecCccC
Confidence 347888888888899999999998720 0 266688999999999987
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.31 E-value=0.5 Score=34.22 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 130 HQARETLRVMMELQRRQRNETSQRFHVHLDRVNQIL 165 (226)
Q Consensus 130 hQAREtLi~mme~Qi~~r~e~~~~ir~~~d~~~e~L 165 (226)
-|+++.+|.-++.++.++.+++..++..+|+-+.++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 478899999999999999999999999999876544
No 4
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=85.65 E-value=1.3 Score=31.68 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 131 QARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQ 167 (226)
Q Consensus 131 QAREtLi~mme~Qi~~r~e~~~~ir~~~d~~~e~L~~ 167 (226)
++++.+|.-||..++++.++|+.+|.++++.+.++..
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~ 57 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPV 57 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999998873
No 5
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=44.11 E-value=45 Score=26.76 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=13.3
Q ss_pred HHHHHhhcChHHHHHHHHHHHHH
Q psy17466 120 IHHLLNEFRPHQARETLRVMMEL 142 (226)
Q Consensus 120 mHHLLNeyRPhQAREtLi~mme~ 142 (226)
++.+++.+ |.--|.+|..++.-
T Consensus 120 ~~~ll~~L-P~~n~~~L~~L~~~ 141 (201)
T 3msx_B 120 VQRLLDQL-PRANVVLLRYLFGV 141 (201)
T ss_dssp HHHHHTTS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CHHHHHHHHHHHHH
Confidence 34455544 55567788777753
No 6
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=36.12 E-value=85 Score=22.93 Aligned_cols=57 Identities=30% Similarity=0.362 Sum_probs=29.9
Q ss_pred HHHhhcChHHH--H----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q psy17466 122 HLLNEFRPHQA--R----ETLRVMMELQ---RRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLD 178 (226)
Q Consensus 122 HLLNeyRPhQA--R----EtLi~mme~Q---i~~r~e~~~~ir~~~d~~~e~L~~~l~~l~~~~~~ 178 (226)
+.||.+|--+| | ++|..+++.= +++|+++.+..++...+-.+.|+.....|...|.|
T Consensus 9 k~L~niR~LRA~arel~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~ 74 (86)
T 3nr7_A 9 KILNNIRTLRAQARESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGID 74 (86)
T ss_dssp HHHTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44555555443 3 3444444332 66777776666555555555555555545444443
No 7
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=35.60 E-value=66 Score=22.66 Aligned_cols=51 Identities=8% Similarity=0.119 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 110 VEDISLLFIHIHHLLNEFRPHQ-ARETLRVMMELQRRQRNETSQRFHVHLDRVNQILN 166 (226)
Q Consensus 110 i~di~~L~iNmHHLLNeyRPhQ-AREtLi~mme~Qi~~r~e~~~~ir~~~d~~~e~L~ 166 (226)
+++|+.++-... .+.. +...+..+++.|+++-.+.++++++..+.....+.
T Consensus 19 L~eIk~~l~~~~------~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 19 LESIRELLSIRI------DPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp HHHHHHHHHHHH------CGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777663221 1211 33456778888877777777655555554333333
No 8
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=34.87 E-value=1.5e+02 Score=23.77 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhC-C---CChHHHhHHHHHHHHHHHHHHHHhhcChH---HHHHHHHHHHHHHH--------------
Q psy17466 86 LLVNFLDLIDLLVQC-P---DSPRRTEKVEDISLLFIHIHHLLNEFRPH---QARETLRVMMELQR-------------- 144 (226)
Q Consensus 86 LL~nfLeLl~~L~~~-P---~~~~~~~ki~di~~L~iNmHHLLNeyRPh---QAREtLi~mme~Qi-------------- 144 (226)
-|.+|++|-+.|... | +.+-...+|.++..-+-.+.--++.|... -....|..||.+|+
T Consensus 8 ~~~~~~dl~~~~~~~~~~~~~~~p~~~aI~~V~~eVd~L~~eV~~F~G~~~dkey~~L~E~L~k~LLKLD~IdteGd~~v 87 (142)
T 3a8y_C 8 TLITYIDLKEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKC 87 (142)
T ss_dssp --------CCCCCCBTTTCCCSSHHHHHHHHHHHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHHHHHTCCCTTCHHH
T ss_pred HHHHHhhHHHHhhhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHcCcCCCCCHHH
Confidence 356777777766542 1 11112456666666666666666666554 55667777777773
Q ss_pred -HHHHHHHHHHHHHHH
Q psy17466 145 -RQRNETSQRFHVHLD 159 (226)
Q Consensus 145 -~~r~e~~~~ir~~~d 159 (226)
..|+..+.+++..++
T Consensus 88 R~aRK~aVk~VQ~~Le 103 (142)
T 3a8y_C 88 KAARKQAVRLAQNILS 103 (142)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 356666655555554
No 9
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=34.07 E-value=1.3e+02 Score=23.58 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=37.5
Q ss_pred HHHHhhcChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17466 121 HHLLNEFRPHQARE-TLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIEN 171 (226)
Q Consensus 121 HHLLNeyRPhQARE-tLi~mme~Qi~~r~e~~~~ir~~~d~~~e~L~~~l~~ 171 (226)
--||.++.-.|+|. +|+..++.=..+.++.++.||..+.+.+.+++..-.+
T Consensus 46 v~Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~ 97 (123)
T 4aj5_K 46 VTLLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQ 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666677775 5666666445566799999999999999999885443
No 10
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.42 E-value=98 Score=23.89 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=29.9
Q ss_pred HHhHHHHHH----HHHHHHHHHHhhcChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 106 RTEKVEDIS----LLFIHIHHLLNEFRPHQAR-ETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQ 167 (226)
Q Consensus 106 ~~~ki~di~----~L~iNmHHLLNeyRPhQAR-EtLi~mme~Qi~~r~e~~~~ir~~~d~~~e~L~~ 167 (226)
++.-|++|. .|=.++..+.++.++.... +.=+.-|+.++...+......+..++..+.-++.
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666554 3446777777777765543 1122333444444433333333334444444443
No 11
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=31.33 E-value=1.9e+02 Score=23.27 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHhhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCc
Q psy17466 122 HLLNEFRP--HQARETLRVMMELQRRQRNETSQRFHVHLDRV---NQILNQAIENLPDT 175 (226)
Q Consensus 122 HLLNeyRP--hQAREtLi~mme~Qi~~r~e~~~~ir~~~d~~---~e~L~~~l~~l~~~ 175 (226)
-||..=+| -|+=.-||..|-.+.+.|.+.+.+.+..+++| -++|.+.|.+....
T Consensus 24 ~Lirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg 82 (158)
T 1naf_A 24 RLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQG 82 (158)
T ss_dssp HHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46777777 67777777777767677777777777777777 45677777777654
No 12
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=29.11 E-value=59 Score=24.11 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 145 RQRNETSQRFHVHLDRVNQILNQA 168 (226)
Q Consensus 145 ~~r~e~~~~ir~~~d~~~e~L~~~ 168 (226)
++|+..+.++.+.+++|.++|++.
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qM 68 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEM 68 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888888873
No 13
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.46 E-value=2e+02 Score=20.81 Aligned_cols=22 Identities=32% Similarity=0.435 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17466 146 QRNETSQRFHVHLDRVNQILNQ 167 (226)
Q Consensus 146 ~r~e~~~~ir~~~d~~~e~L~~ 167 (226)
+|+..+..+.+.+++|.++|.+
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~q 52 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQ 52 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665
No 14
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=23.52 E-value=1.7e+02 Score=22.16 Aligned_cols=31 Identities=3% Similarity=0.007 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 134 ETLRVMMELQRRQRNETSQRFHVHLDRVNQI 164 (226)
Q Consensus 134 EtLi~mme~Qi~~r~e~~~~ir~~~d~~~e~ 164 (226)
+.+..+++.|+++-.+.++++++..+....+
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (135)
T 1q06_A 78 ADVKRRTLEKVAEIERHIEELQSMRDQLLAL 108 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777666666665554444443333
No 15
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=23.38 E-value=60 Score=24.00 Aligned_cols=46 Identities=13% Similarity=0.291 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 111 EDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQA 168 (226)
Q Consensus 111 ~di~~L~iNmHHLLNeyRPhQAREtLi~mme~Qi~~r~e~~~~ir~~~d~~~e~L~~~ 168 (226)
++...++..+..-|+.+.. + --++|+..+.++.+.+++|.++|++.
T Consensus 12 ~df~~l~~~i~~kl~~i~~----------~--~geerk~~i~~ie~~l~EA~ell~qM 57 (102)
T 1vcs_A 12 QDFAVLTAEITSKIARVPR----------L--PPDEKKQMVANVEKQLEEARELLEQM 57 (102)
T ss_dssp HHHHHHHHHHHHHHHHGGG----------S--CTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc----------c--CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554321 0 12567777888888999999998884
No 16
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=22.45 E-value=95 Score=26.47 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=14.2
Q ss_pred HHhhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 123 LLNEFR-PHQARETLRVMMELQRRQRNETSQRFHVHLD 159 (226)
Q Consensus 123 LLNeyR-PhQAREtLi~mme~Qi~~r~e~~~~ir~~~d 159 (226)
|+..++ ||+.+ ..+.+.|.|++.-|+.+++++.++.
T Consensus 53 Ll~~L~lph~~~-~aVSL~erQ~~~LR~r~~~Le~~L~ 89 (252)
T 3e98_A 53 LIPELRIPHQPG-DAVSLVERQVRLLRERNIEMRHRLS 89 (252)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCC-CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 45554 4556667776666666666655543
No 17
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.07 E-value=2.3e+02 Score=20.77 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 138 VMMELQRRQRNETSQRFHVHLDRVNQILNQ 167 (226)
Q Consensus 138 ~mme~Qi~~r~e~~~~ir~~~d~~~e~L~~ 167 (226)
.-|+.++...+++|+++.+.+++-+..|..
T Consensus 47 kkl~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 47 KHKENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567888888888888888776666655
No 18
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.63 E-value=1.4e+02 Score=17.90 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466 139 MMELQRRQRNETSQRFHVHLDRVNQILN 166 (226)
Q Consensus 139 mme~Qi~~r~e~~~~ir~~~d~~~e~L~ 166 (226)
.+|+.++.-...++.+++.+|+..+-++
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777777777888887665544
No 19
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.58 E-value=1.3e+02 Score=19.73 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy17466 147 RNETSQRFHVHLDRVNQILNQAIE 170 (226)
Q Consensus 147 r~e~~~~ir~~~d~~~e~L~~~l~ 170 (226)
++|.++++|+.+.+++.-|=+++.
T Consensus 13 KqEIL~E~RkElqK~K~EIIeAi~ 36 (45)
T 1use_A 13 KQELLEEVKKELQKVKEEIIEAFV 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777777665555443
Done!