RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17466
(226 letters)
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation;
3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB:
1yke_A
Length = 108
Score = 115 bits (290), Expect = 1e-33
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 70 PQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRP 129
+ + +ELRKL SLL+N+L+LI +L PD R KVE+I + ++IHHLLNE+RP
Sbjct: 13 TNYQYKIQELRKLLKSLLLNYLELIGVLSINPDMYER--KVENIRTILVNIHHLLNEYRP 70
Query: 130 HQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILN 166
HQ+RE+L +++E Q + + +V+ L
Sbjct: 71 HQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKLT 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-05
Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 43/125 (34%)
Query: 8 VSSLPLPPVQYINNYTDELIR-----RGRAPKPPLPIHDS-------------YSMFGNQ 49
+ L + T ELI+ R A +P +S ++FG Q
Sbjct: 105 AAKLLQENDTTLVK-TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 50 FNADDTIIRPLESQGIKRLYPQHFDRRRELRKLN---HSLLVNFLDLI-DLLVQCPDSPR 105
N DD Y F+ ELR L H L+ + + + L + +
Sbjct: 164 GNTDD--------------Y---FE---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 106 RTEKV 110
EKV
Sbjct: 204 DAEKV 208
Score = 38.9 bits (90), Expect = 0.001
Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 62/184 (33%)
Query: 27 IRRGRAP-------------KPP-----LPI----HDSYSMFGNQFNADDTIIRPLESQG 64
+R+ +AP K LP+ H + A D I + L
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-LVP----ASDLINKDLVKNN 447
Query: 65 I----KRL----YPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLL 116
+ K + Y +LR L+ S+ ++D +++ P V+ +
Sbjct: 448 VSFNAKDIQIPVY--DTFDGSDLRVLSGSIS---ERIVDCIIRLP--------VKWETTT 494
Query: 117 FIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTD 176
H+L +F P A + L R ++ T R I+ ++ PD D
Sbjct: 495 QFKATHIL-DFGPGGASG----LGVLTHRNKDGTGVRV---------IVAGTLDINPDDD 540
Query: 177 LDSK 180
K
Sbjct: 541 YGFK 544
Score = 28.9 bits (64), Expect = 1.6
Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 67/184 (36%)
Query: 10 SLPLPPVQYINNYT---DELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIK 66
L +P + + ++ + P+P F ADD P E
Sbjct: 19 VLLVPTASFFI-ASQLQEQFNKI--LPEPT-----------EGFAADDEPTTPAE----- 59
Query: 67 RLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNE 126
L+ FL + LV+ P + ++V ++ L E
Sbjct: 60 -------------------LVGKFLGYVSSLVE-PSKVGQFDQV---------LNLCLTE 90
Query: 127 FRPHQARETLR------VMMELQRRQRNETSQRFHV--HLDRVNQILNQAIENLPDTDLD 178
F L + +L + + + + + + + +
Sbjct: 91 FE----NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS----N 142
Query: 179 SKLL 182
S L
Sbjct: 143 SALF 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 1e-04
Identities = 30/199 (15%), Positives = 54/199 (27%), Gaps = 61/199 (30%)
Query: 34 KPPLPIHDSYSMFGNQFNADDTIIRPLE----------------SQGIKRLYPQHFDRRR 77
K I + N N+ +T++ L+ S IK R
Sbjct: 179 KMDFKIF--WLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 78 EL---RKLNHSLLVNFLD------LIDLL-VQCP--------------DSPRRTEKV--- 110
L + + LLV L + + C + T
Sbjct: 236 RLLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 111 ------EDISL-LFIHIHHLLNEFRPHQARET--LRVMM--ELQRRQRNETSQRF-HVHL 158
D L + + P + T R+ + E R T + HV+
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNC 352
Query: 159 DRVNQILNQAIENLPDTDL 177
D++ I+ ++ L +
Sbjct: 353 DKLTTIIESSLNVLEPAEY 371
Score = 38.7 bits (89), Expect = 0.001
Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 57/236 (24%)
Query: 21 NYTDELIRRGRA-PKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRE- 78
NY L+ + + P + Y ++ D+ + + R Q + + R+
Sbjct: 90 NY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---VSR--LQPYLKLRQA 143
Query: 79 LRKLNH--------------SLLVNFLDLIDLLVQC--PD-----SPRRTEKVEDI---- 113
L +L + + + + VQC + + E +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 114 SLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVH----LDRVNQILNQAI 169
L I H + LR+ +Q R + + + L V +A
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQN--AKAW 259
Query: 170 ENLPDTDLDSKLLINTDDFNSNDSNRKDDASV-DGVNPYDRLMCELVD-NMPLTND 223
+L K+L+ T R V D ++ L +M LT D
Sbjct: 260 NAF---NLSCKILLTT---------R--FKQVTDFLSAATTTHISLDHHSMTLTPD 301
Score = 36.8 bits (84), Expect = 0.006
Identities = 36/236 (15%), Positives = 56/236 (23%), Gaps = 80/236 (33%)
Query: 57 IRPLESQGIKRLYPQHFDRRRELRKLNHSLL-------VNFLDLIDL------LVQCPDS 103
P I + +N L +N L+ + L P S
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 104 ---PRRT----------EKVEDI-------SLLF-------IHIHHLLNEFRPHQARETL 136
P V + SL+ I I + E + E
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY- 443
Query: 137 RVMMELQRR---QRNETSQR---------------FHV--HLDRVNQILNQAIENLPDTD 176
L R N H+ HL + + +
Sbjct: 444 ----ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP--ERMTLFRMVF 497
Query: 177 LDSKLL---INTDDFNSNDSNRKDDAS----------VDGVNPYDRLMCELVDNMP 219
LD + L I D N S + D Y+RL+ ++D +P
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 31.4 bits (72), Expect = 0.19
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 17/127 (13%)
Query: 42 SYSMFGNQFNADDTIIRPLESQG-IKRLYPQHFDRRRELRKLNHSLLVNFL-----DLID 95
+++M GN+ + G I R FD R ++ +++ +++L +L D
Sbjct: 115 THTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRM-MEVEYTMRISYLELYNEELCD 173
Query: 96 LLVQCPDSPRRTEKVEDISLLF-IHIHHLLNEFRPHQARETLRVMME-LQRRQR-----N 148
LL D + +D + + I L E H + +++ + +RR+ N
Sbjct: 174 LL--STDDTTKIRIFDDSTKKGSVIIQG-LEEIPVHSKDDVYKLLEKGKERRKTATTLMN 230
Query: 149 ETSQRFH 155
S R H
Sbjct: 231 AQSSRSH 237
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.32
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 11/30 (36%)
Query: 76 RRELRKLNHSLLVNFLDLIDLLVQCPDS-P 104
++ L+KL SL L DS P
Sbjct: 19 KQALKKLQASL--------KLYA--DDSAP 38
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 30.2 bits (69), Expect = 0.51
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 15/127 (11%)
Query: 42 SYSMFGNQFNADDTIIRPLESQG-IKRLYPQHFDRRRELRKLNHSLLVNFL-----DLID 95
+++M G + ++ G I R Q F++ + S+ V+ L +L D
Sbjct: 103 TFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFD 161
Query: 96 LLVQCPDSPRRTEKVEDISLLF-IHIHHLLNEFRPHQARETLRVMME-LQRRQR-----N 148
LL D R + +D + I L E H E +++ + +R N
Sbjct: 162 LLNPSSDVSERLQMFDDPRNKRGVIIKG-LEEITVHNKDEVYQILEKGAAKRTTAATLMN 220
Query: 149 ETSQRFH 155
S R H
Sbjct: 221 AYSSRSH 227
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 29.1 bits (66), Expect = 0.99
Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 27/127 (21%)
Query: 42 SYSMFGNQFNADDTIIRPLESQG-IKRLYPQHFDR---RRELRKLNHSLLVNFL-----D 92
SYSM E G + R F+R R+E K + +F+
Sbjct: 109 SYSMGMTPPGEILP-----EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEK 163
Query: 93 LIDLLVQCPDSPRRTEKVEDISLLFIH----IHHLLNEFRPHQARETLRVMMELQRRQRN 148
DLL P P + + + L +H +HH+L + R M N
Sbjct: 164 PFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILE--LGTRNRRVRPTNM-------N 214
Query: 149 ETSQRFH 155
S R H
Sbjct: 215 SNSSRSH 221
>3pdm_P Coat protein; helical virus, virus-RNA complex; 3.50A {Hibiscus
latent singapore virus}
Length = 162
Score = 27.8 bits (61), Expect = 2.0
Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 12/124 (9%)
Query: 110 VEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRF---HVHLDRVNQILN 166
L I + N F+ R+TLR + + + R+ ++ N L
Sbjct: 18 APYDVFLEILVKSRSNSFQTQAGRDTLREQLINSLQIVANLNTRYPLLGFYVWVRNPTLA 77
Query: 167 QAIENLPDTDLDSKLLINTDDFNSNDSN--------RKDDASVDGVNPYDRLMCELVDNM 218
E L D+K I + S + R DDA+V D ++ L
Sbjct: 78 PVFEALLRA-TDTKNRIIEVEEESRPTTAETLNATQRVDDATVAIHKEIDNILLLLQGGT 136
Query: 219 PLTN 222
+ +
Sbjct: 137 AVYD 140
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 27.9 bits (63), Expect = 2.3
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 21 NYTDELIRRGR-APKPPLP 38
+ D L+ +G K P
Sbjct: 61 CFPDYLMTKGEYQLKMEPP 79
>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A
{Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A*
1ecn_A* 1eco_A*
Length = 136
Score = 27.3 bits (60), Expect = 2.6
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 149 ETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLL 182
+ + F H +R+ ++ I LP+ + D
Sbjct: 50 KGTAPFETHANRIVGFFSKIIGELPNIEADVNTF 83
>3lb2_A Dehaloperoxidase A; globin, oxidoreductase; HET: HEM; 1.06A
{Amphitrite ornata} PDB: 1ewa_A* 1ew6_A* 2qfk_A* 3kun_A*
3lb1_A* 3dr9_A* 3lb3_A* 3lb4_A* 3mou_A* 3ord_A* 3mym_A*
3k3u_A* 3o7n_A* 3kuo_A* 2qfn_A* 3myn_A* 3oj1_A* 3ok5_A*
3ixf_A*
Length = 137
Score = 26.9 bits (59), Expect = 3.2
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 150 TSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLIN 184
+ +F H ++V ++ + + D +
Sbjct: 48 SMAKFGDHTEKVFNLMMEVADRATDCVPLASDANT 82
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 27.5 bits (62), Expect = 3.6
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 21 NYTDELIRRGR-APKPPLP 38
N +D + G A + PLP
Sbjct: 45 NPSDLIPITGAYAHRIPLP 63
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 27.4 bits (61), Expect = 3.6
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 96 LLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFH 155
+L + + + + L++ + + ++ + + + +F
Sbjct: 168 ILYRRQNGKSVFKPIAFQQRLYLVV---VGTGINAS----TAKVVNDVHKMKQQQPVQFK 220
Query: 156 VHLDRVNQILNQAIENLPDTDLDS 179
D I++QA E L DL
Sbjct: 221 RLYDNYTHIVSQAREALQKGDLQR 244
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 27.6 bits (62), Expect = 3.8
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 21 NYTDELIRRGRAPKPPLP 38
N +D GR P
Sbjct: 66 NASDINYSAGRYDPSVKP 83
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 27.5 bits (62), Expect = 3.8
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 21 NYTDELIRRGR-APKPPLP 38
N+ D L+R G + P
Sbjct: 38 NFADHLMRLGAYLTRLHPP 56
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 27.6 bits (60), Expect = 4.1
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 11/122 (9%)
Query: 104 PRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQ 163
+ L Q +L +R+ Q + + Q
Sbjct: 119 AIHYANGDADPLFQTDKFAATQTDPARQLAAVKEKAGDLAQRR-----QALAPTIQLLKQ 173
Query: 164 ILNQAIENLPDTDLDSKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTND 223
+ QA + P D ++ + + N + L +N+PL+
Sbjct: 174 AVCQADKPCPIFDTPWRVEQSKSGKTTISGLS------VMANMVETLRLGWSENLPLSQL 227
Query: 224 GF 225
+
Sbjct: 228 AW 229
>1cgm_E Cucumber green mottle mosaic virus; helical virus; 3.40A {Cucumber
green mottle mosaic virus} SCOP: a.24.5.1
Length = 161
Score = 27.0 bits (59), Expect = 4.1
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 12/124 (9%)
Query: 110 VEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRF---HVHLDRVNQILN 166
V +LL + F+ R++ R + + + RF + +L
Sbjct: 19 VPVRTLLNFLVASQGTAFQTQAGRDSFRESLSALPSSVVDINSRFPDAGFYAFLNGPVLR 78
Query: 167 QAIENLPDTDLDSKLLINTDDFNSNDSN--------RKDDASVDGVNPYDRLMCELVDNM 218
+L + D++ + SN + R DDAS D L+ +
Sbjct: 79 PIFVSLLSS-TDTRNRVIEVVDPSNPTTAESLNAVKRTDDASTAARAEIDNLIESISKGF 137
Query: 219 PLTN 222
+ +
Sbjct: 138 DVYD 141
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA-
binding, metal-binding, transcription regulation; HET:
PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3
d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Length = 138
Score = 26.5 bits (58), Expect = 5.0
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 78 ELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRP-------- 129
EL + + S+ L+ D +++ R+E + D+ FI H
Sbjct: 2 ELIRFSISIPSKLLEKFDQIIEEIGYENRSEAIRDLIRDFIIRHEWEVGNEEVAGTITIV 61
Query: 130 --HQARETLRVMMELQRRQRNETSQRFHVHLD 159
H + ++ +++LQ +E HVH+D
Sbjct: 62 YNHDEGDVVKALLDLQHEYLDEIISSLHVHMD 93
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 27.1 bits (61), Expect = 5.1
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 21 NYTDELIRRGR-APKPPLP 38
N + IR G + KP LP
Sbjct: 70 NPVETYIRSGTYSRKPLLP 88
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid,
hydrolase, structural genomics, NPPSFA; NMR {Thermus
thermophilus}
Length = 89
Score = 25.1 bits (55), Expect = 7.5
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 76 RRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEK 109
+EL KL+ + L + V + PR +
Sbjct: 12 EKELEKLDREVARRILRFLRERVATLEDPRSLGE 45
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor,
protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A
3v5y_A 3v5z_A
Length = 160
Score = 26.1 bits (57), Expect = 8.1
Identities = 11/62 (17%), Positives = 26/62 (41%)
Query: 111 EDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIE 170
D L ++ EF+ H+ E ++ LQ+R + + L + + + ++
Sbjct: 38 NDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLSEMLSLFEKGLK 97
Query: 171 NL 172
N+
Sbjct: 98 NV 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.405
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,462,600
Number of extensions: 195888
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 41
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)