RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17466
(226 letters)
>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex
protein MED7 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 95
Score = 112 bits (282), Expect = 6e-33
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 74 DRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQAR 133
+ +ELRKL SLL+N+L+LI +L PD R KVE+I + ++IHHLLNE+RPHQ+R
Sbjct: 4 YKIQELRKLLKSLLLNYLELIGVLSINPDMYER--KVENIRTILVNIHHLLNEYRPHQSR 61
Query: 134 ETLRVMMELQRRQRNETSQRFHVHLDRVNQILN 166
E+L +++E Q + + +V+ L
Sbjct: 62 ESLIMLLEEQLEYKRGEIREIEQVCKQVHDKLT 94
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 26.7 bits (58), Expect = 1.9
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 137 RVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDDFNSNDSNRK 196
+ + ++ + + + + NLPD + D +N N +
Sbjct: 138 LKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVK------VIIADNPNNSKNGE 191
Query: 197 DDASVDGVNPYDRL 210
+DG+N +D L
Sbjct: 192 KAVRIDGLNVFDML 205
>d1rmva_ a.24.5.1 (A:) Ribgrass mosaic virus {Ribgrass mosaic virus
[TaxId: 51680]}
Length = 156
Score = 25.9 bits (57), Expect = 2.8
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 110 VEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRV---NQILN 166
E +L + L ++ R+T+R +QRF RV + ++
Sbjct: 18 AEPTPMLNQCVSALSQSYQTQAGRDTVRQQFANLLSTIVAPNQRFPDTGFRVYVNSAVIK 77
Query: 167 QAIENLPDTDLDSK-LLINTDDFNS-------NDSNRKDDASVDGVNPYDRLMCELVDNM 218
E L + D++ +I T++ + N + R DDA+V + L+ EL +
Sbjct: 78 PLYEALMKS-FDTRNRIIETEEESRPSASEVANATQRVDDATVAIRSQIQLLLNELSNGH 136
Query: 219 PLTN 222
N
Sbjct: 137 GYMN 140
>d1ei7a_ a.24.5.1 (A:) Tobacco mosaic virus coat protein {Tobacco
mosaic virus, vulgare strain [TaxId: 12242]}
Length = 158
Score = 25.6 bits (56), Expect = 3.5
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 110 VEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRV---NQILN 166
+ I L+ + + L N+F+ QAR ++ + + + RF +V N +L+
Sbjct: 18 ADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLD 77
Query: 167 QAIENLPDTDLDSKLLINTDDFNSNDSN--------RKDDASVDGVNPYDRLMCELVDNM 218
+ L D++ I + +N + R DDA+V + + L+ EL+
Sbjct: 78 PLVTALLGA-FDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGT 136
Query: 219 PLTN 222
N
Sbjct: 137 GSYN 140
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 26.1 bits (57), Expect = 4.0
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 18/152 (11%)
Query: 89 NFLDLIDLLVQCPDS------------PRRTEKVEDISLLFIHIHHLLNEFRPHQARETL 136
F DL++L S R VE ++LL +
Sbjct: 56 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 115
Query: 137 RVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL-DSKLLINTDDFNSNDSNR 195
R + + +E +++ V + + LP T L D ++ + +
Sbjct: 116 RQITQ-VYGFYDECLRKYGNA--NVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTL 172
Query: 196 KDDASVDGVN--PYDRLMCELVDNMPLTNDGF 225
++D + P++ MC+L+ + P G+
Sbjct: 173 DHIRALDRLQEVPHEGPMCDLLWSDPDDRGGW 204
>d2bj7a2 d.58.18.4 (A:51-132) Nickel responsive regulator NikR,
C-terminal domain {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 82
Score = 24.6 bits (54), Expect = 4.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 130 HQARETLRVMMELQRRQRNETSQRFHVHLD 159
H + ++ +++LQ +E HVH+D
Sbjct: 14 HDEGDVVKALLDLQHEYLDEIISSLHVHMD 43
>d1q5ya_ d.58.18.4 (A:) Nickel responsive regulator NikR, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 84
Score = 24.6 bits (54), Expect = 4.8
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 130 HQARETLRVMMELQRRQRNETSQRFHVHLD 159
H+ R+ ++ Q + + HVH++
Sbjct: 13 HEKRDLASRIVSTQHHHHDLSVATLHVHIN 42
>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 25.2 bits (55), Expect = 5.0
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 65 IKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDS---PRRTEKVEDISLLFIHIH 121
+ R++ H + ++ + S+ +FL + L QC + R E ++ +
Sbjct: 65 VDRVFKDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYD 124
Query: 122 HL 123
L
Sbjct: 125 QL 126
>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 303
Score = 25.6 bits (55), Expect = 5.5
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 8/103 (7%)
Query: 65 IKRLYPQH---FDRRRE---LRKLNHSLLVNFLD-LIDLLVQCPDSPRRTEKVEDISLL- 116
+K + + R E L H ++ F+ ++ E SL
Sbjct: 31 VKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFD 90
Query: 117 FIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLD 159
+++ + + E A T + L + H D
Sbjct: 91 YLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRD 133
>d1cgme_ a.24.5.1 (E:) Cucumber green mottle mosaic virus {Cucumber
green mottle mosaic virus, strain watermelon [TaxId:
12235]}
Length = 160
Score = 25.2 bits (55), Expect = 5.8
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 16/120 (13%)
Query: 110 VEDISLLFIHIHHLLNEFRPHQARETLR-VMMELQRRQRNETSQ----RFHVHLDRVNQI 164
V +LL + F+ R++ R + L + S+ F+ +
Sbjct: 18 VPVRTLLNFLVASQGTAFQTQAGRDSFRESLSALPSSVVDINSRFPDAGFYAF--LNGPV 75
Query: 165 LNQAIENLPDTDLDSKLLINTDDFNSNDSN--------RKDDASVDGVNPYDRLMCELVD 216
L +L + D++ + SN + R DDAS D L+ +
Sbjct: 76 LRPIFVSLLSS-TDTRNRVIEVVDPSNPTTAESLNAVKRTDDASTAARAEIDNLIESISK 134
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus
[TaxId: 271]}
Length = 61
Score = 23.9 bits (52), Expect = 5.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 143 QRRQRNETSQRFHVHLDRVNQILNQAIENL 172
+ E F V +R+ QI N+A+ L
Sbjct: 27 REHTLEEVGAYFGVTRERIRQIENKALRKL 56
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE
{Escherichia coli [TaxId: 562]}
Length = 267
Score = 24.9 bits (54), Expect = 9.3
Identities = 15/147 (10%), Positives = 40/147 (27%), Gaps = 24/147 (16%)
Query: 43 YSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQ-CP 101
+++F +F + + L S + H +V + + +
Sbjct: 41 FNLFIKKFQSVSLLEEYLRSSPY---VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 97
Query: 102 DSPRRTEKVEDISLLFIH-----IHHLLNEFRPHQARET---------------LRVMME 141
+L F +L+ + + + + E
Sbjct: 98 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISALVVKESIENVRNKLEIKTQFEKE 157
Query: 142 LQRRQRNETSQRFHVHLDRVNQILNQA 168
+ R + + ++ R+N L+ A
Sbjct: 158 KLAQDRIKMKNQLDANIQRLNYSLDIA 184
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli
[TaxId: 562]}
Length = 68
Score = 23.1 bits (50), Expect = 9.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 143 QRRQRNETSQRFHVHLDRVNQILNQAIENL 172
E ++F V +R+ QI +A+ L
Sbjct: 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKL 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.405
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 839,724
Number of extensions: 38181
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 24
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)