BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17467
(730 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 99/119 (83%), Positives = 111/119 (93%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
MEDY FLFK+VL+GNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVEIN E++KLQI
Sbjct: 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
WDTAGQERFRSITQSYYRSA+ALIL YDI+C+ +F CL +WLREIE+YAS KV+ VLVG
Sbjct: 80 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 138
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 11/81 (13%)
Query: 173 CIPKLARNEACFYLASLEGHSNN--IHCMARNKID-REDREIPTEVGEDFAKRHDMYYLE 229
C+P+ +L +E +++N I + NKID E RE+ + E+F++ DMYYLE
Sbjct: 116 CLPE--------WLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLE 167
Query: 230 TSAKASDNVEKLFMQIAAELM 250
TSAK SDNVEKLF+ +A L+
Sbjct: 168 TSAKESDNVEKLFLDLACRLI 188
>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1128
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/146 (64%), Positives = 113/146 (77%)
Query: 407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
PG ES RK R +T +DKLH AL+ELCF+INY N+ VW+ TF PREYL HLE RF+++
Sbjct: 660 PGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKS 719
Query: 467 LVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSH 526
+VGM M+N T EIAKPSELL SVRAYM VLQ++ENYV ID+TRVFNN LLQQTQ +DSH
Sbjct: 720 IVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSH 779
Query: 527 GEKTVAALYIQWYSEVLLRRVSETQV 552
GE T+ +LY WY E LLR+VS +
Sbjct: 780 GEPTITSLYTNWYLETLLRQVSNGHI 805
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 87/119 (73%), Gaps = 5/119 (4%)
Query: 553 KSLNLLNFLRVY-----TVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSE 607
K LL +R Y ++ENYV ID+TRVFNN LLQQTQ +DSHGE T+ +LY WY E
Sbjct: 735 KPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLE 794
Query: 608 VLLRRVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNE 666
LLR+VS G+I + +AFV+L E + FNAEE+SD++E+R+L++L+GPYGMK L+E
Sbjct: 795 TLLRQVSNGHIAYFPAMKAFVNLPTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSE 853
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 82/97 (84%), Gaps = 4/97 (4%)
Query: 251 EKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIK 310
+KLAEKLTI++DRGVGMLTR+YNIKKACGD K+KPS+L DK+LES +K IV+KFP ++ +
Sbjct: 11 QKLAEKLTILNDRGVGMLTRLYNIKKACGDPKAKPSYLIDKNLESAVKFIVRKFPAVETR 70
Query: 311 S----VSGISQIRSDIVKSLSLYYYTFVDLLHFKDCV 343
+ ++ + + +S+I+K+L+LYY+TFVD++ FKD V
Sbjct: 71 NNNQQLAQLQKEKSEILKNLALYYFTFVDVMEFKDHV 107
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 127 VNEMASAAGLLCTVDPALATALASDKTD--LDEDEHVLACLLMVFVAVCIPKLARNEACF 184
V E++SAAGL C +DPAL AL+S K++ E+E+ +ACLLMVFVAV +P LA N
Sbjct: 958 VYELSSAAGLPCEIDPALVVALSSQKSENISPEEEYKIACLLMVFVAVSLPTLASNVMSQ 1017
Query: 185 YLASLEGHSNNIHCMAR 201
Y ++EGH NNIHC+A+
Sbjct: 1018 YSPAIEGHCNNIHCLAK 1034
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 672 FNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPH 711
+N AHEM H SD +PRLGQMI+DYE P+KK+ EEF+PH
Sbjct: 160 YNYAHEMTHGASDREYPRLGQMIVDYENPLKKMMEEFVPH 199
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 112/164 (68%), Gaps = 13/164 (7%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
E Y FLFK+VLVG+A VGKTC+V+RF G F QG+TIGVDF +KT+EI +R+KLQIW
Sbjct: 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
DTAGQERFR+ITQSYYRSA+ IL YDI+ + +F + W+ ++ +YA ++++L+G
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143
Query: 122 SGLKIVNEMASAAG--------LLCTVDPALATALASDKTDLDE 157
S L + E++ A +LC ++ + A D ++++E
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETS-----AKDSSNVEE 182
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 193 SNNIHCMARNKID-REDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEKLFMQIAAELM 250
SN + + NK D E RE+ + A+ +D+ +ETSAK S NVE+ F+++A EL+
Sbjct: 133 SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 95/123 (77%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+GN+GVGK+CL+ RF+ + +TIGVDF IKTVE++ + +KLQIWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQERFR+IT SYYR +H +I+VYD++ Q +F+ + WL+EI+ YA+ VL++LVG
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 123 GLK 125
LK
Sbjct: 124 DLK 126
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 196 IHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLA 254
+ + NK D +D R + +V ++FA + M +LETSA S NVE F+ +A ++ E ++
Sbjct: 115 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174
Query: 255 EK 256
++
Sbjct: 175 QQ 176
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 95/123 (77%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+GN+GVGK+CL+ RF+ + +TIGVDF IKTVE++ + +KLQIWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQERFR+IT SYYR +H +I+VYD++ Q +F+ + WL+EI+ YA+ VL++LVG
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 123 GLK 125
LK
Sbjct: 124 DLK 126
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 199 MARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
+ NK D +D R + +V ++FA + M +LETSA S NVE F+ +A ++ E ++++
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 95/123 (77%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+GN+GVGK+CL+ RF+ + +TIGVDF IKTVE++ + +KLQIWD
Sbjct: 17 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQERFR+IT SYYR +H +I+VYD++ Q +F+ + WL+EI+ YA+ VL++LVG
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 123 GLK 125
LK
Sbjct: 137 DLK 139
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 193 SNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
S + + NK D +D R + +V ++FA + M +LETSA S NVE F+ +A ++ E
Sbjct: 125 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 113/165 (68%), Gaps = 14/165 (8%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
M +Y +LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQI
Sbjct: 3 MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
WDTAGQERFR+IT SYYR AH +I+VYD++ Q ++ + WL+EI+ YAS V ++LVG
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
Query: 121 TSGL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDE 157
S L K+V+ E A + G+ P L T+ A + T++++
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGI-----PFLETS-AKNATNVEQ 161
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 193 SNNIH-CMARNKIDREDREI-PTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
S N++ + NK D +++ ++FA + +LETSAK + NVE+ FM +AAE+
Sbjct: 112 SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIK 171
Query: 251 EKLA 254
+++
Sbjct: 172 KRMG 175
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 113/165 (68%), Gaps = 14/165 (8%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
M +Y +LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQI
Sbjct: 3 MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
WDTAGQERFR+IT SYYR AH +I+VYD++ Q ++ + WL+EI+ YAS V ++LVG
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
Query: 121 TSGL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDE 157
S L K+V+ E A + G+ P L T+ A + T++++
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGI-----PFLETS-AKNATNVEQ 161
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 193 SNNIH-CMARNKIDREDREI-PTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
S N++ + NK D +++ ++FA + +LETSAK + NVE+ FM +AAE+
Sbjct: 112 SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIK 171
Query: 251 EKLA 254
+++
Sbjct: 172 KRMG 175
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 114/170 (67%), Gaps = 14/170 (8%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 123 GL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164
L K+V+ E A + G+ P L T+ A + T++++ +A
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQSFMTMAA 165
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 193 SNNIH-CMARNKIDREDREI-PTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
S N++ + NK D +++ ++FA + +LETSAK + NVE+ FM +AAE+
Sbjct: 109 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 168
Query: 251 EKL 253
+++
Sbjct: 169 KRM 171
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 113/170 (66%), Gaps = 14/170 (8%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+G++GVGK CL+ RF + +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 12 EYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131
Query: 123 GL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164
L K+V+ E A + G+ P L T+ A + T++++ +A
Sbjct: 132 DLTTKKVVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQSFMTMAA 175
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 193 SNNIH-CMARNKIDREDREI-PTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
S N++ + NK D +++ ++FA + +LETSAK + NVE+ FM +AAE+
Sbjct: 119 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178
Query: 251 EKL 253
+++
Sbjct: 179 KRM 181
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 91/117 (77%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 193 SNNIH-CMARNKIDREDREI-PTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
S N++ + NK D +++ ++FA + +LETSAK + NVE+ FM +AAE+
Sbjct: 119 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178
Query: 251 EKLAEKLT 258
+++ T
Sbjct: 179 KRMGPGAT 186
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 114/170 (67%), Gaps = 14/170 (8%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 21 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 140
Query: 123 GL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164
L K+V+ E A + G+ P L T+ A + T++++ +A
Sbjct: 141 DLTTKKVVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQSFMTMAA 184
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 193 SNNIH-CMARNKIDREDREI-PTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
S N++ + NK D +++ ++FA + +LETSAK + NVE+ FM +AAE+
Sbjct: 128 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 187
Query: 251 EKLA 254
+++
Sbjct: 188 KRMG 191
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 91/117 (77%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 217 EDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLA 254
++FA + +LETSAK + NVE+ FM +AAE+ +++
Sbjct: 137 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 145 bits (366), Expect = 9e-35, Method: Composition-based stats.
Identities = 74/163 (45%), Positives = 112/163 (68%), Gaps = 14/163 (8%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG
Sbjct: 89 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148
Query: 123 GL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDE 157
L K+V+ E A + G+ P L T+ A + T++++
Sbjct: 149 DLTTKKVVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQ 185
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 202 NKIDREDREI-PTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D +++ ++FA + +LETSAK + NVE+ F AAE+ ++
Sbjct: 146 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 113/170 (66%), Gaps = 14/170 (8%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQIWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQERFR+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 123 GL---KIVN-----EMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164
L K+V+ E A + G+ P L T+ A + T++++ +A
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQSFMTMAA 165
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 193 SNNIH-CMARNKIDREDREI-PTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
S N++ + NK D +++ ++FA + +LETSAK + NVE+ FM +AAE+
Sbjct: 109 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 168
Query: 251 EKL 253
+++
Sbjct: 169 KRM 171
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 89/117 (76%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+ + N+ +KLQIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQERFR+IT SYYR AH +I+VYD++ + +FD + W++EI+ YA V ++LVG
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVG 121
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 209 REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
R + ++ G + A H + ++ETSAK + NVE+ F +A E+ +++
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 141 bits (356), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/153 (42%), Positives = 106/153 (69%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
Y +LFK++L+G++GVGKTC++ RF++ F +TIG+DF I+T+E++ +RIKLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
AGQERFR+IT +YYR A ++LVYDI+ + +FD + +W+R IEE+AS V ++++G
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 124 LKIVNEMASAAGLLCTVDPALATALASDKTDLD 156
+ +++ G +D + S K +++
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
NK D D R++ E GE A + + ++ETSAKA+ NVE F +A ++ K+
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 139 bits (350), Expect = 6e-33, Method: Composition-based stats.
Identities = 64/151 (42%), Positives = 105/151 (69%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+LFK++L+G++GVGKTC++ RF++ F +TIG+DF I+T+E++ +RIKLQIWDTAG
Sbjct: 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
QERFR+IT +YYR A ++LVYDI+ + +FD + +W+R IEE+AS V ++++G +
Sbjct: 65 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 126 IVNEMASAAGLLCTVDPALATALASDKTDLD 156
+++ G +D + S K +++
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKANIN 155
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D D R++ E GE A + + ++ETSAKA+ NVE F +A ++ K+ +K
Sbjct: 119 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 109/164 (66%), Gaps = 14/164 (8%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL---K 125
FR+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG L K
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 126 IVN-----EMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164
+V+ E A + G+ P L T+ A + T++++ +A
Sbjct: 121 VVDYTTAKEFADSLGI-----PFLETS-AKNATNVEQSFMTMAA 158
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 193 SNNIH-CMARNKIDREDREI-PTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
S N++ + NK D +++ ++FA + +LETSAK + NVE+ FM +AAE+
Sbjct: 102 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 161
Query: 251 EKL 253
+++
Sbjct: 162 KRM 164
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 86/117 (73%), Gaps = 1/117 (0%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQG-ATIGVDFMIKTVEINNERIKLQIWD 62
Y FKV+LVG++GVGKTCL+ RF G F G +T+G+DF K ++++ ++KLQ+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQERFRS+T +YYR AHAL+L+YD++ + +FD + WL EI EYA V +L+G
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 202 NKIDR-EDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK+D +R + E GE AK + + ++ETSAK NV+ F IA EL +
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 134 bits (337), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/115 (52%), Positives = 86/115 (74%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 70 RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG L
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 88/122 (72%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
Y + K++L+G++GVGK+CL+ RF + F P TIG+DF IKTV+IN +++KLQ+WDT
Sbjct: 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
AGQERFR+IT +YYR A +ILVYD++ + TF + W + + E+A+ + +LVG S
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 124 LK 125
++
Sbjct: 137 ME 138
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 YLASLEGHSNNIH--CMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242
+ ++ H+N+ + NK D E R + + GE AK + ++E+SAK DNV ++F
Sbjct: 114 WFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 173
Query: 243 MQIAAELMEKL 253
+A + EK+
Sbjct: 174 FTLAKLIQEKI 184
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
DY LFK++++G++GVGK+ L+ RF F TIGVDF I+TVEIN E++KLQIWD
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQERFR+IT +YYR H +I+VYD++ +F + WL EI + V R+LVG
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVG 120
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 132 bits (331), Expect = 8e-31, Method: Composition-based stats.
Identities = 59/119 (49%), Positives = 87/119 (73%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
+ K++L+G++GVGK+CL+ RF + F P TIG+DF IKTV+IN +++KLQIWDTAGQ
Sbjct: 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
ERFR+IT +YYR A +ILVYDI+ + TF + W + + E+A+ + +LVG S ++
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
NK D E R + + GE AK + ++E+SAK DNV ++F +A + EK+
Sbjct: 116 NKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 87/119 (73%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
+ K++L+G++GVGK+CL+ RF + F P TIG+DF IKTV+IN +++KLQ+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
ERFR+IT +YYR A +ILVYD++ + TF + W + + E+A+ + +LVG S ++
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 125
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 YLASLEGHSNNIH--CMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242
+ ++ H+N+ + NK D E R + + GE AK + ++E+SAK DNV ++F
Sbjct: 101 WFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 160
Query: 243 MQIAAELMEKL 253
+A + EK+
Sbjct: 161 FTLAKLIQEKI 171
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 131 bits (329), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/116 (50%), Positives = 85/116 (73%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
+ K++L+G++GVGK+CL+ RF + F P TIG+DF IKTV+IN +++KLQIWDTAGQ
Sbjct: 3 IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
ERFR+IT +YYR A +ILVYDI+ + TF + W + + E+A+ + +LVG S
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 118
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
NK D E R + + GE AK + ++E+SAK DNV ++F +A + EK+
Sbjct: 116 NKSDXETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 131 bits (329), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/114 (54%), Positives = 83/114 (72%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
F +V+++G+ GVGKT L+ RFT F +T+GVDF IKTVE+ ++I+LQIWDTAG
Sbjct: 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
QERF SIT +YYRSA +ILVYDI+ + TFD L W++ I++YAS +LVG
Sbjct: 85 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 202 NKIDRE-DREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
NK+D E DREI + GE FA++ M + E SAK + NV+++F+++ ++++K+
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 129 bits (325), Expect = 5e-30, Method: Composition-based stats.
Identities = 57/116 (49%), Positives = 85/116 (73%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
+ K++L+G++GVGK+CL+ RF + F P TIG+DF IKTV+IN +++KLQ+WDTAGQ
Sbjct: 3 IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
ERFR+IT +YYR A +ILVYD++ + TF + W + + E+A+ + +LVG S
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 118
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
NK D E R + + GE AK + ++E+SAK DNV ++F +A + EK+
Sbjct: 116 NKSDXETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 90/132 (68%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
Y +LFK +++G+ GVGK+CL+ +FT F P TIGV+F + + I+ ++IKLQIWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
AGQE FRSIT+SYYR A +LVYDI+ + TF+ LT WL + ++++ ++ +L+G S
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 124 LKIVNEMASAAG 135
L+ E+ G
Sbjct: 127 LESRREVKKEEG 138
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 180 NEACFYLASLEGHSNN--IHCMARNKIDREDR-EIPTEVGEDFAKRHDMYYLETSAKASD 236
N +L HSN+ + + NK D E R E+ E GE FA+ H + ++ETSAK +
Sbjct: 99 NHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTAS 158
Query: 237 NVEKLFMQIAAELMEK 252
NVE+ F+ A E+ EK
Sbjct: 159 NVEEAFINTAKEIYEK 174
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 82/122 (67%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
DY LFK+VL+G++GVGK+ L+ RFT+ F +TIGV+F +T+EI +RIK QIWD
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQER+R+IT +YYR A ++VYDIS +++ WL E+ E A V L+G S
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 123 GL 124
L
Sbjct: 129 DL 130
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 209 REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHD 262
R +PTE + FA+ + + + ETSA S+NV+K F ++ + +K+++ + D
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGD 187
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 81/118 (68%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
E Y FLFK +++GNAG GK+CL+ +F + F TIGV+F K + + + +KLQIW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFRS+T+SYYR A +LVYDI+ + T++ LT+WL + AS ++ +L G
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
I C + +D DRE+ FA+ +++ +LETSA +NVE+ F+Q A +++ K+
Sbjct: 119 ILCGNKKDLD-ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 81/118 (68%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
E Y FLFK +++GNAG GK+CL+ +F + F TIGV+F K + + + +KLQIW
Sbjct: 6 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFRS+T+SYYR A +LVYDI+ + T++ LT+WL + AS ++ +L G
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
I C + +D DRE+ FA+ +++ +LETSA ++VE+ F+Q A +++ K
Sbjct: 120 ILCGNKKDLD-ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+LFK +++G+ GVGK+CL+ +FT F P TIGV+F + V I+ ++IKLQIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
QE FRSIT+SYYR A +LVYDI+ + TF+ LT WL + +++S ++ +L+G S L+
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 126 IVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159
++ G + L S KT + +E
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 193 SNNIHCMARNKIDREDR-EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
SN + + NK D E R ++ E GE FA+ H + ++ETSAK + NVE+ F+ A E+
Sbjct: 125 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184
Query: 252 KLAEKL 257
K+ + L
Sbjct: 185 KIQQGL 190
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 90/124 (72%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
++Y +LFKVVL+G++GVGK+ L+ RFT+ F +TIGV+F ++++++ + IK QIW
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
DTAGQER+R+IT +YYR A +LVYDI+ T++ + WL+E+ ++A ++ +LVG
Sbjct: 84 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 122 SGLK 125
S L+
Sbjct: 144 SDLR 147
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 185 YLASLEGH--SNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
+L L H SN + + NK D R R +PT+ FA+++ + ++ETSA S NVE
Sbjct: 123 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182
Query: 242 FMQIAAEL 249
F I E+
Sbjct: 183 FQTILTEI 190
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 87/122 (71%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
Y +LFKVVL+G++GVGK+ L+ RFT+ F +TIGV+F ++++++ + IK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
AGQER+R IT +YYR A +LVYDI+ T++ + WL+E+ ++A ++ +LVG S
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 124 LK 125
L+
Sbjct: 122 LR 123
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 185 YLASLEGH--SNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
+L L H SN + + NK D R R +PT+ FA+++++ ++ETSA S NVE+
Sbjct: 99 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA 158
Query: 242 FMQIAAELMEKLAEK 256
F I E+ +++K
Sbjct: 159 FKNILTEIYRIVSQK 173
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 88/122 (72%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
Y +LFKVVL+G++GVGK+ L+ RFT+ F +TIGV+F ++++++ + IK QIWDT
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123
AGQER+R+IT +YYR A +LVYDI+ T++ + WL+E+ ++A ++ +LVG S
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 124 LK 125
L+
Sbjct: 137 LR 138
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 185 YLASLEGH--SNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
+L L H SN + + NK D R R +PT+ FA+++ + ++ETSA S NVE
Sbjct: 114 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 173
Query: 242 FMQIAAEL 249
F I E+
Sbjct: 174 FQTILTEI 181
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 85/130 (65%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
MEDY F+FKVVL+G +GVGKT L+ RFT+ F TIGV+F +TV + +K QI
Sbjct: 4 MEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 63
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
WDTAG ER+R+IT +YYR A +LV+D++ T+ + WL+E+ ++A ++ +LVG
Sbjct: 64 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 123
Query: 121 TSGLKIVNEM 130
S L E+
Sbjct: 124 KSDLSQAREV 133
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D + RE+PTE FA+ + + +LETSA S NVE F + E+ K++++
Sbjct: 123 NKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 82/122 (67%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
DY +LFK+VL+G++GVGK+ L+ RFT F +TIGV+F +T+E+ N++IK QIWD
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAG ER+R+IT +YYR A ++VYDIS +++ WL E+ E A V L+G S
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 123 GL 124
L
Sbjct: 126 DL 127
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 209 REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
R +PT+ ++FA + M + ETSA SDNV+K F ++ + + +++
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 81/123 (65%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
E Y FLFK +++GNAG GK+CL+ +F + F TIGV+F K + + + +KLQIW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
DTAG ERFRS+T+SYYR A +LVYDI+ + T++ LT+WL + AS ++ +L G
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 122 SGL 124
L
Sbjct: 123 KDL 125
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
I C + +D DRE+ FA+ +++ +LETSA ++VE+ F+Q A +++ K
Sbjct: 117 ILCGNKKDLD-ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 89/124 (71%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
++Y +LFKVVL+G++GVGK+ L+ RFT+ F +TIGV+F ++++++ + IK QIW
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
DTAG ER+R+IT +YYR A +LVYDI+ T++ + WL+E+ ++A ++ +LVG
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 122 SGLK 125
S L+
Sbjct: 123 SDLR 126
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 185 YLASLEGH--SNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
+L L H SN + + NK D R R +PT+ FA+++ + ++ETSA S NVE
Sbjct: 102 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 161
Query: 242 FMQIAAEL 249
F I E+
Sbjct: 162 FQTILTEI 169
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 88/124 (70%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
++Y +LFKVVL+G++GVGK+ L+ RFT+ F +TIGV+F ++++++ + IK QIW
Sbjct: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
DTAG ER+R+IT +YYR A +LVYDI+ T++ + WL+E+ ++A ++ LVG
Sbjct: 66 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNK 125
Query: 122 SGLK 125
S L+
Sbjct: 126 SDLR 129
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 185 YLASLEGH--SNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
+L L H SN + + NK D R R +PT+ FA+++ + ++ETSA S NVE
Sbjct: 105 WLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 164
Query: 242 FMQIAAEL 249
F I E+
Sbjct: 165 FQTILTEI 172
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 89/124 (71%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
++Y +LFKVVL+G++GVGK+ L+ RFT+ F +TIGV+F ++++++ + IK QIW
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
DTAG ER+R+IT +YYR A +LVYDI+ T++ + WL+E+ ++A ++ +LVG
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 122 SGLK 125
S L+
Sbjct: 144 SDLR 147
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 185 YLASLEGH--SNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
+L L H SN + + NK D R R +PT+ FA+++ + ++ETSA S NVE
Sbjct: 123 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182
Query: 242 FMQIAAEL 249
F I E+
Sbjct: 183 FQTILTEI 190
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 84/121 (69%), Gaps = 2/121 (1%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
+FK++++G++ VGKTCL RF G FP ATIGVDF + V+I+ ERIK+Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 67 ERFR-SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVGGTSGL 124
ERFR S+ Q YYR+ HA++ VYD++ +F L W+ E +++ + + R+LVG L
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 125 K 125
+
Sbjct: 140 R 140
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKA---SDNVEKLFMQIAAEL 249
NK D R ++PT++ + FA H M ETSAK +D+VE +FM +A +L
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 124 bits (311), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
ED K++++G +GVGK+ L+ RFT F P ATIGVDF +KT+ ++ + KL IW
Sbjct: 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK-VLRVLVG 119
DTAGQERFR++T SYYR A +ILVYD++ + TF L +WL E+E Y + ++ LVG
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
++ + NKID+E+RE+ G FA++H ++E SAK D V+ F EL+EK+ +
Sbjct: 123 VNXLVGNKIDKENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAF----EELVEKIIQ 178
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 83/117 (70%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
++ ++FK++++GN+ VGKT + R+ F P +T+G+DF +KT+ N++RIKLQIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQER+R+IT +YYR A IL+YDI+ + +F+ + DW +I+ Y+ +LVG
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 117
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
+FK++++G++ VGKTCL RF G FP ATIGVDF + V+I+ ERIK+Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 67 ERFR-SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVGGTSGL 124
ERFR S+ Q YYR+ HA++ VYD + +F L W+ E +++ + + R+LVG L
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 125 K 125
+
Sbjct: 149 R 149
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKA---SDNVEKLFMQIAAEL 249
NK D R ++PT++ + FA H ETSAK +D+VE +F +A +L
Sbjct: 144 NKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 85/131 (64%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
EDY F+FKVVL+G +GVGKT L+ RFT+ F TIGV+F +TV + +K QIW
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
DTAG ER+R+IT +YYR A +LV+D++ T+ + WL+E+ ++A ++ +LVG
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 139
Query: 122 SGLKIVNEMAS 132
S L E+ +
Sbjct: 140 SDLSQAREVPT 150
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D + RE+PTE FA+ + + +LETSA S NVE F + E+ K++++
Sbjct: 138 NKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 82/117 (70%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
++ ++FK++++GN+ VGKT + R+ F P +T+G+DF +KTV + +R+KLQIWD
Sbjct: 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQER+R+IT +YYR A IL+YDI+ + +F+ + DW +I+ Y+ +LVG
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
NK D E+R +PTE G+ A++ + E SAK + +V + F ++ + +K+++
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 121 bits (304), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/123 (47%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWD 62
Y +LFK+VL+G++GVGK+ L+ RFT+ F +TIGV+F K++++ NN+ IK QIWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQER+R+IT +YYR A +LVYDI+ + +F+ + WL+E+ + A ++ +LVG S
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 123 GLK 125
LK
Sbjct: 124 DLK 126
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 193 SNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
SN + + NK D + R I +AK+ + ++ETSA + NVE F Q+ E+
Sbjct: 112 SNIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 86/123 (69%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y ++FK +++G+ GVGK+CL+ +FT+ F TIGV+F + +E++ ++IKLQIWD
Sbjct: 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQERFR++T+SYYR A ++VYDI+ + T++ L+ WL + + + +L+G +
Sbjct: 71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130
Query: 123 GLK 125
L+
Sbjct: 131 DLE 133
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 192 HSNNIHCMARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
+ N + + NK D E R++ E + FA+ + + +LE SAK +NVE F++ A ++
Sbjct: 118 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
Query: 251 E 251
+
Sbjct: 178 Q 178
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 82/120 (68%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
++FK++L+GN+ VGKT + R+ F P +T+G+DF +KTV +++RIKLQIWDTAG
Sbjct: 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
QER+R+IT +YYR A +L+YDI+ Q +F + DW +I+ Y+ +LVG L+
Sbjct: 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
NK D ED R +P E G A + E SAK + NV+++F ++ + EK+ E
Sbjct: 135 NKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 119 bits (298), Expect = 5e-27, Method: Composition-based stats.
Identities = 55/123 (44%), Positives = 87/123 (70%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFKVVL+G++GVGK+ L+ RFT+ F +TIGV+F ++++++ + IK QIWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAG ER+R+IT +YYR A +LVYDI+ T++ + WL+E+ ++A ++ LVG S
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 123 GLK 125
L+
Sbjct: 121 DLR 123
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 185 YLASLEGH--SNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
+L L H SN + + NK D R R +PT+ FA+++ + ++ETSA S NVE
Sbjct: 99 WLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 158
Query: 242 FMQIAAEL 249
F I E+
Sbjct: 159 FQTILTEI 166
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 77/114 (67%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
FLFK +++G+AG GK+CL+ +F + F TIGV+F + V + + +KLQIWDTAG
Sbjct: 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
QERFRS+T+SYYR A +LVYDI+ + T++ L WL + AS ++ +L G
Sbjct: 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
I C + +D E RE+ FA+ +++ +LETSA +NVE+ F++ A ++ K+
Sbjct: 134 ILCGNKKDLDPE-REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 85/123 (69%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y ++FK +++G+ GVGK+CL+ +FT+ F TIGV+F + +E++ ++IKLQIWD
Sbjct: 26 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
TAGQ RFR++T+SYYR A ++VYDI+ + T++ L+ WL + + + +L+G +
Sbjct: 86 TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 145
Query: 123 GLK 125
L+
Sbjct: 146 DLE 148
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 192 HSNNIHCMARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250
+ N + + NK D E R++ E + FA+ + + +LE SAK +NVE F++ A ++
Sbjct: 133 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192
Query: 251 EKL 253
+ +
Sbjct: 193 QNI 195
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 117 bits (292), Expect = 3e-26, Method: Composition-based stats.
Identities = 51/116 (43%), Positives = 79/116 (68%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
+ + FK++++GN+ VGKT + R+ F P +T+G+DF +KT+ N++RIKLQIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
AG ER+R+IT +YYR A IL YDI+ + +F+ + DW +I+ Y+ +LVG
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
NK D ED R + +E G A + E SAK + NV++ F ++ + EK +E L
Sbjct: 121 NKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESL 177
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 75/123 (60%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KV L+G+ GVGK+ +V RF + F P TIG FM KTV+ NE K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
RFR++ YYR + A I+VYDI+ + TF L +W+RE+ ++ ++ + G L V
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 128 NEM 130
E+
Sbjct: 126 REV 128
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 191 GHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246
G + + +A NK D D RE+ +D+A ++ETSAK + N+ +LF++I+
Sbjct: 107 GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 163
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 3/131 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+VL G+A VGK+ + R + F AT+GVDF +KT+ ++ ER LQ+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
RFRSI +SY+R A ++L+YD++C+ +F + +W+ IE+ A V +LVG + ++
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR-- 146
Query: 128 NEMASAAGLLC 138
+ A+ G C
Sbjct: 147 -DTAATEGQKC 156
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 74/123 (60%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KV L+G+ GVGK+ ++ RF + F P TIG FM KTV+ NE K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
RFR++ YYR + A I+VYDI+ + TF L +W+RE+ ++ ++ + G L V
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 128 NEM 130
E+
Sbjct: 127 REV 129
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 191 GHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246
G + + +A NK D D RE+ +D+A ++ETSAK + N+ +LF++I+
Sbjct: 108 GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 76/117 (64%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ TF +W++E++ AS ++ L G + L
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + +A NK D R + + + +A + + ++ETSAK + NV ++FM IA +
Sbjct: 104 QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 163
Query: 249 L 249
L
Sbjct: 164 L 164
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 76/117 (64%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ ++V +++ +K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ Q TF W++E++ AS ++ L G + L
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADL 125
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 198 CMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
+A NK D + R + E + +A + + ++ETSAK + NV LF+ IA +L
Sbjct: 117 ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G + L
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G + L
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + ++ NK D + R + + + +A + + ++ETSAK S NV ++FM IA +
Sbjct: 108 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 167
Query: 249 L 249
L
Sbjct: 168 L 168
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G + L
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + ++ NK D + R + + + +A + + ++ETSAK S NV ++FM IA +
Sbjct: 107 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Query: 249 L 249
L
Sbjct: 167 L 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G + L
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + ++ NK D + R + + + +A + + ++ETSAK S NV ++FM IA +
Sbjct: 107 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Query: 249 L 249
L
Sbjct: 167 L 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G + L
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + ++ NK D + R + + + +A + + ++ETSAK S NV ++FM IA +
Sbjct: 107 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Query: 249 L 249
L
Sbjct: 167 L 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G + L
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + ++ NK D + R + + + +A + + ++ETSAK S NV ++FM IA +
Sbjct: 107 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Query: 249 L 249
L
Sbjct: 167 L 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G + L
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + ++ NK D + R + + + +A + + ++ETSAK S NV ++FM IA +
Sbjct: 107 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Query: 249 L 249
L
Sbjct: 167 L 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 77/117 (65%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G + L
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + ++ NK D + R + + + +A + + ++ETSAK S NV ++FM IA +
Sbjct: 107 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
Query: 249 L 249
L
Sbjct: 167 L 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 72/123 (58%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KV L+G+ GVGK+ +V RF Q F TIG FM KTV NE K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
RF S+ YYR + A ++VYDI+ Q +F L W++E++E+ ++ + G L +
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 128 NEM 130
E+
Sbjct: 144 REV 146
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 191 GHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
G N + +A NK D D RE+P + +++A+ +ETSAK + N+E+LF I+ ++
Sbjct: 125 GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 75/117 (64%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TI F+ +TV +++ +K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ TF +W++E++ AS ++ L G + L
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + +A NK D R + + + +A + + ++ETSAK + NV ++FM IA +
Sbjct: 106 QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 165
Query: 249 L 249
L
Sbjct: 166 L 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 75/117 (64%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ TF +W++E++ AS ++ L G + L
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + +A NK D R + + + +A + + ++ETSAK + NV ++FM IA +
Sbjct: 106 QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 165
Query: 249 L 249
L
Sbjct: 166 L 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 76/117 (64%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G + L
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
+ N + ++ NK D + R + + + +A + + ++ETSAK S NV ++FM IA +
Sbjct: 106 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 165
Query: 249 L 249
L
Sbjct: 166 L 166
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 70/98 (71%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K+V+VGN VGK+ +++R+ +G+F TIGVDF+ + +++N+E ++L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
F +IT++YYR A A +LV+ + + +F+ ++ W ++
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV 103
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+V +G VGKT L+ RF F ATIG+DF+ KT+ + + I+LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
RFRS+ SY R + A ++VYDI+ +F T W+ ++ V+ +LVG + L
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 123
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
E S+ I + NK D D R++ E GE AK ++ ++ETSAKA NV++LF ++AA
Sbjct: 107 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 166
Query: 249 L 249
L
Sbjct: 167 L 167
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+VL+G+ G GK+ LV RF + F Q +TIG F +T+ +N+ +K +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
+ S+ YYR A A I+V+D++ Q +F+ W++E++ + ++ L G S L
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED-REIPTEVGEDFAK 221
A ++VF R + +G+ N + +A NK D D R++ E + +A+
Sbjct: 86 AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ 145
Query: 222 RHDMYYLETSAKASDNVEKLFMQIAAEL 249
+ ++++ETSAK + NV+++F +IA L
Sbjct: 146 ENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+V +G VGKT L+ RF F ATIG+DF+ KT+ + + ++LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
RFRS+ SY R + ++VYDI+ +F T W+ ++ V+ +LVG + L
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 118
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
E S+ I + NK D D R++ E GE AK ++ ++ETSAKA NV++LF ++AA
Sbjct: 102 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 161
Query: 249 L 249
L
Sbjct: 162 L 162
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/117 (41%), Positives = 74/117 (63%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V +G VGKT ++ RF F +TIG+DF+ KT+ ++ ++LQ+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
RFRS+ SY R + A I+VYDI+ + +F+ T W+++I V+ LVG + L
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDL 118
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D D R++ E G A+ ++ + ETSAKA N++ LF + A++L
Sbjct: 114 NKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 69/111 (62%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+VL+G A VGK+ +V RF F + TIG F+ + V IN +K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
F S+ YYR+A A ++VYD++ +F W++E+ E AS ++ LVG
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115
Score = 35.8 bits (81), Expect = 0.099, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 202 NKIDR----EDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NKID +R++ E GE A+ + + ETSAK +NV +F+ I ++
Sbjct: 116 NKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 76/128 (59%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+V +G VGKT L+ RF F ATIG+DF+ KT+ + + ++LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
RFRS+ SY R + ++VYDI+ +F + W+ ++ V+ +LVG + L
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 128 NEMASAAG 135
++++ G
Sbjct: 135 RQVSTEEG 142
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
E S+ I + NK D D R++ TE GE AK ++ ++ETSAKA NV++LF ++AA
Sbjct: 115 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 174
Query: 249 L 249
L
Sbjct: 175 L 175
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 71/117 (60%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+V +G VGKT L+ RF F ATIG+DF+ KT+ + + ++LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
RFRS+ SY R + ++VYDI+ +F + W+ ++ V+ +LVG + L
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDL 119
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
E S+ I + NK D D R+I E GE AK + ++ETSAK NV++LF ++A+
Sbjct: 103 ERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASA 162
Query: 249 LME 251
L+E
Sbjct: 163 LLE 165
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 70/114 (61%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+ FKVVL+G VGKT LV R+ + F T+G F+ K + I +R+ L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
QERF ++ YYR ++ ILVYDI+ + +F + +W++E+ + ++ +VG
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 118
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 198 CMARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
C+ NKID E +R + + E +A+ + TSAK + +E+LF+ + ++E
Sbjct: 115 CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 71/117 (60%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+V +G VGKT L+ RF F ATIG+DF+ KT+ + + I+LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
RFRS+ SY R + A ++VYDI+ +F T W+ ++ V+ +LVG + L
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
E S+ I + NK D D R++ E GE AK ++ ++ETSAKA NV++LF ++AA
Sbjct: 114 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 173
Query: 249 L 249
L
Sbjct: 174 L 174
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%)
Query: 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
K L KV+++G++GVGKT L+ ++ F ATIG DF+ K V +++ + +QIWDTA
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65
Query: 65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
GQERF+S+ ++YR A +LV+D++ TF L W E
Sbjct: 66 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 202 NKIDREDREIPTEVGEDFA-KRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
NKID E+R++ T+ + + ++++ Y ETSAK + NVE+ F IA +++ E
Sbjct: 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 179
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
K L KV+++G++GVGKT L+ ++ F ATIG DF+ K V +++ + +QIWDTA
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65
Query: 65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE 104
GQERF+S+ ++YR A +LV+D++ TF L W E
Sbjct: 66 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE 105
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 202 NKIDREDREIPTEVGEDFA-KRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
NKID E+R++ T+ + + ++++ Y ETSAK + NVE+ F IA +++ E
Sbjct: 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 179
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%)
Query: 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
K L KV+++G++GVGKT L+ ++ F ATIG DF+ K V +++ + +QIWDTA
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65
Query: 65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
GQERF+S+ ++YR A +LV+D++ TF L W E
Sbjct: 66 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 202 NKIDREDREIPTEVGEDFA-KRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
NKID E+R++ T+ + + ++++ Y ETSAK + NVE+ F IA +++ E
Sbjct: 125 NKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 179
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 70/117 (59%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+V +G VGKT L+ RF F ATIG+DF+ KT+ + + ++LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
RFRS+ SY R + ++VYDI+ +F T W+ ++ V+ +LVG + L
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 123
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
E S+ I + NK D D R++ E GE AK ++ ++ETSAKA NV++LF ++AA
Sbjct: 107 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 166
Query: 249 L 249
L
Sbjct: 167 L 167
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 70/117 (59%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+V +G VGKT L+ RF F ATIG+DF+ KT+ + + ++LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124
RFRS+ SY R + ++VYDI+ +F T W+ ++ V+ +LVG + L
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 133
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 190 EGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248
E S+ I + NK D D R++ E GE AK ++ ++ETSAKA NV++LF ++AA
Sbjct: 117 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 176
Query: 249 L 249
L
Sbjct: 177 L 177
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 69/114 (60%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+ FKVVL+G VGKT LV R+ + F T+ F+ K + I +R+ L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
QERF ++ YYR ++ ILVYDI+ + +F + +W++E+ + ++ +VG
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 118
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 198 CMARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
C+ NKID E +R + + E +A+ + TSAK + +E+LF+ + ++E
Sbjct: 115 CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
LFKV+L+G+ GVGK+ L+ R+ F TIGV+F+ K +E++ + +QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
ERFRS+ +YR + +L + + +F L++W +E YA K
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK 112
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEKLF 242
NKID +R++ TE + + + + Y Y ETSAK + NV F
Sbjct: 124 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 9/137 (6%)
Query: 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERI-KLQIWDT 63
K + KV+++G++GVGKT L+ R+ + ATIG DF+ K V ++ +++ +Q+WDT
Sbjct: 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 65
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS--------FKVLR 115
AGQERF+S+ ++YR A +LVYD++ +F+ + W E +A+ F +L
Sbjct: 66 AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 125
Query: 116 VLVGGTSGLKIVNEMAS 132
+ KIV+E ++
Sbjct: 126 NKIDAEESKKIVSEKSA 142
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 69/114 (60%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+ FKVVL+G VGKT LV R+ + F T+ F+ K + I +R+ L IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
QERF ++ YYR ++ ILVYDI+ + +F + +W++E+ + ++ +VG
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 132
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 198 CMARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
C+ NKID E +R + + E +A+ + TSAK + +E+LF+ + ++E
Sbjct: 129 CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
LFKV+L+G+ GVGK+ L+ R+ F TIGV+F+ K +E++ + +QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
ERFRS+ +YR + +L + + +F L++W +E YA K
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK 114
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEKLF 242
NKID +R++ TE + + + + Y Y ETSAK + NV F
Sbjct: 126 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 64/101 (63%)
Query: 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
K L KV+++G++GVGKT L+ ++ F ATIG DF+ K V +++ + +QIWDTA
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65
Query: 65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
G ERF+S+ ++YR A +LV+D++ TF L W E
Sbjct: 66 GLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 202 NKIDREDREIPTEVGEDFA-KRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
NKID E+R++ T+ + + ++++ Y ETSAK + NVE+ F IA +++ E
Sbjct: 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 179
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
LFK++L+G+ GVGK+ L+ R+ F TIGV+F+ K +E++ + +QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
ERFRS+ +YR + +L + + +F L++W +E YA K
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK 116
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEKLFMQIAAELM 250
NK D ++R++ TE + + K + Y Y ETSAK S NV F + ++
Sbjct: 128 NKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 73/117 (62%), Gaps = 10/117 (8%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
DY +L K++ +G++GVGKT + R+T F P T+G+DF K V N +
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 55 --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
++ LQ+WDTAGQERFRS+T +++R A +L++D++ Q +F + +W+ +++ A
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 137
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEK---LFMQIAAELMEKLAEKL 257
NK D D RE+ + A ++ + Y ETSA NVEK + + + ME+ EK
Sbjct: 149 NKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKT 208
Query: 258 TI 259
I
Sbjct: 209 QI 210
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV+L+G+ GVGK+ L+ R+ F TIGV+F+ + +E++ + LQIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
ERF+S+ +YR A +L + + + +F+ L +W +E YA K
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVK 112
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEKLFMQIAAELM 250
NK+D+EDR++ TE + + + Y YLETSAK NV F + +++
Sbjct: 124 NKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 103/193 (53%), Gaps = 25/193 (12%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
DY +L K++ +G++GVGKT + R+T F P T+G+DF K V + +
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 55 --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
++ LQ+WDTAG ERFRS+T +++R A +L++D++ Q +F + +W+ +++ A +
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 113 VLR-VLVGGTSGL--------KIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163
VL+G + L + E+A G+ P T+ A+ + ++++ L
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGI-----PYFETSAATGQ-NVEKSVETLL 180
Query: 164 CLLMVFVAVCIPK 176
L+M + C+ K
Sbjct: 181 DLIMKRMEKCVEK 193
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEK---LFMQIAAELMEKLAEKL 257
NK D D RE+ + A+++ + Y ETSA NVEK + + + MEK EK
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKT 194
Query: 258 TI 259
+
Sbjct: 195 QV 196
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 103/193 (53%), Gaps = 25/193 (12%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
DY +L K++ +G++GVGKT + R+T F P T+G+DF K V + +
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 55 --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
++ LQ+WDTAG ERFRS+T +++R A +L++D++ Q +F + +W+ +++ A +
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 113 VLR-VLVGGTSGL--------KIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163
VL+G + L + E+A G+ P T+ A+ + ++++ L
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGI-----PYFETSAATGQ-NVEKSVETLL 180
Query: 164 CLLMVFVAVCIPK 176
L+M + C+ K
Sbjct: 181 DLIMKRMEKCVEK 193
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEK---LFMQIAAELMEKLAEKL 257
NK D D RE+ + A+++ + Y ETSA NVEK + + + MEK EK
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKT 194
Query: 258 TI 259
+
Sbjct: 195 QV 196
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 89.0 bits (219), Expect = 8e-18, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 10/117 (8%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
DY +L K++ +G++GVGKT + R+T F P T+G+DF K V + +
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 55 --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
++ LQ+WDTAG ERFRS+T +++R A +L +D++ Q +F + +W +++ A
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEK---LFMQIAAELMEKLAEKL 257
NK D D RE+ + A+++ + Y ETSA NVEK + + + EK EK
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEKCVEKT 194
Query: 258 TI 259
+
Sbjct: 195 QV 196
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 10/117 (8%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
DY +L K++ +G++GVGKT + R+T F P T+G+DF K V + +
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 55 --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
++ LQ+WDTAG ERFRS+T +++R A +L +D++ Q +F + +W +++ A
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEK---LFMQIAAELMEKLAEK 256
NK D D RE+ + A+++ + Y ETSA NVEK + + + EK EK
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEKCVEK 193
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 72/117 (61%), Gaps = 10/117 (8%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN---------- 52
DY +L K + +G++GVGKT ++ ++T G F T+G+DF K V
Sbjct: 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGR 66
Query: 53 NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
+RI LQ+WDTAG ERFRS+T +++R A +L++D++ + +F + +W+ +++ +A
Sbjct: 67 GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 101
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 55/98 (56%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+ +D++ + T+ + +W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL 108
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
++ + YY A I+++D++ + T+ + +W R++
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F T+GV+ N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F T+GV+ N IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F ATIGV+ + N IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY +A I+++D++ + T+ + +W R++
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 110
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G AT+GV+ N IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F ATIGV+ + N IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY +A I+++D++ + T+ + +W R++
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 103
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F ATIGV+ + N IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY +A I+++D++ + T+ + +W R++
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 102
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 110
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 104
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
KVVLVG+ G GKT L+ F G FP T+ +M+ +++ + + L IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + +Y A L+L +D++ +FD + + W E+ + KV ++VG + L+
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLR 151
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIG-VDFMIKTVEINNERIKLQ 59
ME + +K+ L+G+ GVGKT + R G F AT+G V+ + ++ IK
Sbjct: 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64
Query: 60 IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
+WDTAGQE+ + YY A IL +D++ + T L W++E +
Sbjct: 65 VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ 111
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQ 66
K+V++G+ GKT L F Q F TIG+DF ++ + + N + LQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW---LREIEEYASFKVLRVLVG 119
+ Y A ++LVYDI+ +F+ L DW ++++ E + + L LVG
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG 122
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 9/109 (8%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V++G+ GVGK+ L +F QG+F TI D K VE++ ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRV 116
+F ++ Y ++ LVY I+ Q TF+ L D LRE ++LRV
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LRE-------QILRV 103
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 199 MARNKIDRED-REIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAEL 249
+ NK D ED R + E G++ A++ ++ +LE+SAK+ NV ++F + ++
Sbjct: 113 LVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V++G+ GVGK+ L +F QG+F TI D K VE++ ++ L+I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 64
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE 104
+F ++ Y ++ LVY I+ Q TF+ L D LRE
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LRE 100
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 199 MARNKIDRED-REIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAEL 249
+ NK D ED R + E G++ A++ ++ +LE+SAK+ NV ++F + ++
Sbjct: 115 LVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V++G+ GVGK+ L +F QG+F TI D K VE++ ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE 104
+F ++ Y ++ LVY I+ Q TF+ L D LRE
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LRE 98
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 199 MARNKIDRED-REIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIAAEL 249
+ NK D ED R + E G++ A++ + +LE+SAK+ NV ++F + ++
Sbjct: 113 LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 9/109 (8%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V++G+ GVGK+ L +F QG+F TI D K VE++ ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRV 116
+F ++ Y ++ LVY I+ Q TF+ L D LRE ++LRV
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LRE-------QILRV 103
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 199 MARNKIDRED-REIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIAAEL 249
+ NK D ED R + E G++ A++ + +LE+SAK+ NV ++F + ++
Sbjct: 113 LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
K V VG+ VGKTCL+ +T FP T+ +F V +N + L +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVG 119
E + + YR A IL + + + +++ ++ W+ E++ YA V VLVG
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVG 119
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
+E+ K K+V+VG+ VGKTCL+ F++G P T+ +F ++ NE L +
Sbjct: 17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHL 75
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
WDTAGQE + + Y + ++L + ++ + +FD + T W EI+ Y VLVG
Sbjct: 76 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVG 134
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
+E+ K K+V+VG+ VGKTCL+ F++G P T+ +F ++ NE L +
Sbjct: 16 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHL 74
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
WDTAGQE + + Y + ++L + ++ + +FD + T W EI+ Y VLVG
Sbjct: 75 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVG 133
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 37/146 (25%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDF----------------------- 44
+K VL+G + VGK+ +V R T+ F TIG F
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 45 ---------MIKTVEINNER-----IKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS 90
+I T + NN IK IWDTAGQER+ SI YYR A I+V+DIS
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 91 CQPTFDCLTDWLREIEEYASFKVLRV 116
T D W+ +++ +++ ++ V
Sbjct: 128 NSNTLDRAKTWVNQLKISSNYIIILV 153
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 40/69 (57%)
Query: 185 YLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244
++ L+ SN I + NKID+ ++ + +A+ +++ +++TSAK N++ +F
Sbjct: 138 WVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYM 197
Query: 245 IAAELMEKL 253
+A E+ + +
Sbjct: 198 LAEEIYKNI 206
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG++ GKT L+ F + FP T+ ++ + EI+ +RI+L +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 83
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDC-LTDWLREIEEYASFKVLRVLVGGTSGLK 125
+ ++ Y + A+++ +DIS T D L W EI+E+ + +LVG S L+
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSDLR 140
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG++ GKT L+ F + FP T+ ++ + EI+ +RI+L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 67
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLK 125
+ ++ Y + A+++ +DIS T D L W EI+E+ + +LVG S L+
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSDLR 124
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG++ GKT L+ F + FP T+ ++ + EI+ +RI+L +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 88
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLK 125
+ ++ Y + A+++ +DIS T D L W EI+E+ + +LVG S L+
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSDLR 145
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
M +F+ K V VG+ VGKTC++ +T FP T+ +F V ++ + L +
Sbjct: 1 MSTARFI-KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGL 58
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
WDTAGQE + + YR A +L + + + +++ + WL E++ YA + VLVG
Sbjct: 59 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAP-GIPIVLVG 117
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
K V VG+ VGKTC++ +T FP T+ +F V ++ + L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVG 119
E + + YR A IL + + + +++ + W+ E+ YA V +LVG
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVG 117
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
M KF+ K V VG+ VGKTC++ +T FP T+ D V ++ + + L +
Sbjct: 4 MSVSKFI-KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGL 61
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTF-DCLTDWLREIEEYASFKVLRVLVG 119
WDTAGQE + + YR A +L + + + ++ + L W+ E+ +A V VLVG
Sbjct: 62 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVG 120
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV++VG+ GVGK+ L +F F T D K V ++ E +++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-----EEYASFKVLRVLVGGT 121
E + +I +Y+RS + V+ I+ +F D+ +I +E F +LVG
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF----LLVGNK 132
Query: 122 SGLK 125
S L+
Sbjct: 133 SDLE 136
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D ED R++ E ++ A++ ++ Y+ETSAK NV+K+F + E+
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV++VG+ GVGK+ L +F F T D K V ++ E +++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-----EEYASFKVLRVLVGGT 121
E + +I +Y+RS + V+ I+ +F D+ +I +E F +LVG
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF----LLVGNK 120
Query: 122 SGLK 125
S L+
Sbjct: 121 SDLE 124
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D ED R++ E ++ A++ ++ Y+ETSAK NV+K+F + E+
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV++VG+ GVGK+ L +F F T D K V ++ E +++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 72
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-----EEYASFKVLRVLVGGT 121
E + +I +Y+RS + V+ I+ +F D+ +I +E F +LVG
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF----LLVGNK 128
Query: 122 SGLK 125
S L+
Sbjct: 129 SDLE 132
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D ED R++ E ++ A++ ++ Y+ETSAK NV+K+F + E+
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV++VG+ GVGK+ L +F F T D K V ++ E +++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-----EEYASFKVLRVLVGGT 121
E + +I +Y+RS + V+ I+ +F D+ +I +E F +LVG
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF----LLVGNK 118
Query: 122 SGLK 125
S L+
Sbjct: 119 SDLE 122
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D ED R++ E ++ A + ++ Y+ETSAK NV+K+F + E+
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 123
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ I +E++ ++++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 142
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 124
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 123
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ I +E++ ++++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXP-NVPIILVGNKKDLR 142
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV++VG+ GVGK+ L +F F T D K V ++ E +++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
E + +I +Y+RS +LV+ I+ +F ++ +I
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQI 100
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 202 NKIDREDR-EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D E+R ++P E A+ + Y+ETSAK NV+K+F + E+ K
Sbjct: 117 NKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV++VG+ GVGK+ L +F F T D K V ++ E +++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
E + +I +Y+RS +LV+ I+ +F ++ +I
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQI 104
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 202 NKIDREDR-EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D E+R ++P E A+ + Y+ETSAK NV+K+F + E+ K
Sbjct: 121 NKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 126
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 124
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 125
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 9 KVVLVGNAGVGKTCLVRRF--TQGVFPPGQGATIGVDFMIKTVEINNERIK---LQIWDT 63
K+ +VGN G GKT L+++ T+ Q AT+G+D ++I ++R + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 64 AGQERFRSITQSYYRSAHALIL-VYDIS-CQPTFDCLTDWLREIEEYASFKVLRVLVG 119
AG+E F S T ++ + AL L VYD+S Q D WL I+ AS + +LVG
Sbjct: 64 AGREEFYS-THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVG 119
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV++VG+ GVGK+ L +F F T D K V ++ E +++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-----EEYASFKVLRVLVGGT 121
E + +I +Y+RS + V+ I+ +F D+ +I +E F +LVG
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF----LLVGNK 120
Query: 122 SGLK 125
S L+
Sbjct: 121 SDLE 124
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D ED R++ E ++ A++ ++ Y+ETSAK NV+K+F + E+
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
KVV++G VGKT L +F +G F G T+ + K V + + L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEE-YASFKVLRVLVGGTSGLKIV 127
+ + S+ H +LVY ++ +F + +++ E + +V VLVG + L
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 128 NEMASAAG 135
E+ + G
Sbjct: 145 REVQAVEG 152
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 124
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+VLVG+ GKT +++ + +P T+ ++ +E +R++L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYA-SFKVLRVLVGGTSGLK 125
+ ++ Y + A++L +DIS T D L W EI +Y S +VL L+G + L+
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL--LIGCKTDLR 128
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 34/154 (22%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIV 127
+ + Y +++ + + + + + + W+ E++ +
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC------------------ 127
Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161
P + L ++K DL DEHV
Sbjct: 128 --------------PNVPIILVANKKDLRSDEHV 147
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+VLVG+ GKT +++ + +P T+ ++ +E +R++L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYA-SFKVLRVLVGGTSGLK 125
+ ++ Y + A++L +DIS T D L W EI +Y S +VL L+G + L+
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL--LIGCKTDLR 144
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+VLVG+ GKT +++ + +P T+ ++ +E +R++L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 70
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYA-SFKVLRVLVGGTSGLK 125
+ ++ Y + A++L +DIS T D L W EI +Y S +VL L+G + L+
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL--LIGCKTDLR 127
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ ++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 120
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ ++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ ++G FP T+ ++ + VE++ R++L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ +++ + I + + + + W+ E+ + V +LVG
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-GVPIILVG 121
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ ++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 120
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ ++ FP T+ ++ I +E++ ++++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 9 KVVLVGNAGVGKTCLVRRF--TQGVFPPGQGATIGVDFMIKTVEINNERIK---LQIWDT 63
K+ +VGN G GKT L+++ T+ Q AT+G+D ++I ++R + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 64 AGQERFRSITQSYYRSAHALIL-VYDIS-CQPTFDCLTDWLREIEEYASFKVLRVLVG 119
AG+E F S T ++ + AL L VYD+S Q D WL I+ AS + +LVG
Sbjct: 62 AGREEFYS-THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVG 117
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG GVGK+ L + Q F TI D K V I+ E L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ ++ Y R+ + V+ I+ +F+ + + +I+ S V VLVG S L
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D R + T+ +D A+ + + ++ETSAK V+ F + E+
Sbjct: 117 NKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ ++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ ++ FP T+ ++ + +E++ ++++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K VLVG+ VGKT LV +T +P T D V ++ ++LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
F + Y + +L + + +F +++ W+ EI + K +LVG S L+
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLR 137
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG GVGK+ L + Q F TI D K V I+ E L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ ++ Y R+ + V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 116
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 124
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG GVGK+ L + Q F TI D K V I+ E L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ ++ Y R+ + V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 117
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+ K V+VG+ VGKTCL+ + FP T+ D +V + ++ L ++DTAG
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVG 119
QE + + Y ++ + + +F + +W+ E++EYA V +L+G
Sbjct: 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIG 129
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 117
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 115
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG GVGK+ L + Q F TI D K V I+ E L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ ++ Y R+ + V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++++ + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +++ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVG 114
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 121
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG GVGK+ L + Q F TI D K V I+ E L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ ++ Y R+ + V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 116
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVG 115
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 81
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 133
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 141
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVG 114
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVG 115
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG GVGK+ L + Q F TI D K V I+ E L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ ++ Y R+ + V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 199 MARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
+ NK D R + T+ +D A+ + + ++ETSAK V+ F + E+
Sbjct: 114 LVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+ ++G VGK+ L +F +G F TI F K + +N + LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCL 98
+ Q+Y + ILVY ++ +F+ +
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVI 94
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+ ++G VGK+ L +F +G F TI F K + +N + LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCL 98
+ Q+Y + ILVY ++ +F+ +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVI 96
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 118
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 116
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++++ + L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +++ + W E+ + + +LVG
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVG 121
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++++ + L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +++ + W E+ + + +LVG
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVG 120
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L +F Q +F P TI D +K EI+N+ L + DTAGQE F ++ + Y R+
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 80 AHALILVYDISCQPTFD 96
++VY ++ + +F+
Sbjct: 85 GDGFLIVYSVTDKASFE 101
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To
Gdp
Length = 169
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+ ++G VGK+ L +F +G F TI F K + +N + LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCL 98
+ Q+Y + ILVY ++ +F+ +
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVI 91
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ ++ FP T+ ++ + +E++ ++++L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y +++ + I + + + + W E++ + V +LVG L+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 125
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y ++ + + +F+ + + W+ EI + K +LVG L+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLR 120
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQ--GVFPPGQGATIGVDFMIKTVEINNERIKLQIW--DTA 64
KV +VG A VGK+ L+ FT F T GV+ ++ V I + + ++++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWL 102
G + ++ Y+ + ILV+D+S +F+ W
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF 119
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+ ++G VGK+ L +F +G F TI F K + +N + LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCL 98
+ Q+Y + ILVY ++ +F+ +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVI 96
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K V+VG+ VGKTCL+ +T FP + ++ + TV I E L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y ++ + + +F+ + + W+ EI + K +LVG L+
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLR 124
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y ++ + + +F+ + + W+ EI + K +LVG L+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLR 120
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
E K L K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +W
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLW 208
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
DTAG E + + Y ++ + + +F + W E+ + + +LVG
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVG 266
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
E K L K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +W
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLW 208
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
DTAG E + + Y ++ + + +F + W E+ + + +LVG
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVG 266
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
E K L K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +W
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLW 208
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
DTAG E + + Y ++ + + +F + W E+ + + +LVG
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVG 266
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGK CL+ +T FP T+ ++ + TV I E L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 121
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L +F Q +F P TI D +K EI+N+ L + DTAGQE F ++ + Y R+
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 80 AHALILVYDISCQPTFD 96
++VY ++ + +F+
Sbjct: 90 GDGFLIVYSVTDKASFE 106
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGK CL+ +T FP G+ D V ++ + + L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 121
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T P T+ ++ + TV I E L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T P G+ D V ++ + + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 141
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
++V + G GVGK+ LV RF +G F T+ D + + + LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEE 107
+F ++ + HA ILVY I+ + + + L +I E
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE 102
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 186 LASLEGHSNNIHCM-ARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243
+ ++G +I M NK D RE+ + E A+ ++ETSAK + NV++LF
Sbjct: 100 ICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159
Query: 244 QI 245
++
Sbjct: 160 EL 161
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 65
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 117
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 114
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + + W+ EI + K +LVG
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 118
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 89
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 141
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
++++VG G GKT ++ + G P TIG F ++TV+ N I +WD
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTIP-----TIG--FNVETVQYKN--ISFTVWDVG 69
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
GQ+R RS+ + YYR+ +I V D
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVVD 93
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
++++VG G GKT ++ + G P TIG F ++TV+ N I +WD
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIP-----TIG--FNVETVQYKN--ISFTVWDV 51
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
GQ+R RS+ + YYR+ +I V D
Sbjct: 52 GGQDRIRSLWRHYYRNTEGVIFVVD 76
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
++++VG G GKT ++ + G P TIG F ++TV+ N I +WD
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTIP-----TIG--FNVETVQYKN--ISFTVWDVG 69
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
GQ+R RS+ + YYR+ +I V D
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVID 93
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F G+ D V ++ + + L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFS-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 72
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVG 119
+ + Y ++ + + +F+ + W E+ + + +LVG
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVG 124
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T F PG+ D V ++ + + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 68 RF 69
+
Sbjct: 65 DY 66
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L +F G F TI DF K +E+++ L+I DTAG E+F S+ Y ++
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 80 AHALILVYDISCQPTFD---CLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGL 136
ILVY + Q +F + D + ++ Y KV +LVG L+ E++S+ G
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE--KVPVILVGNKVDLESEREVSSSEGR 132
Query: 137 LCTVD---PALATALASDKTDLDE 157
+ P + T+ A KT +DE
Sbjct: 133 ALAEEWGCPFMETS-AKSKTMVDE 155
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K V+VG+ VGKTCL+ +T FP T+ ++ + TV I E L ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y ++ + + +F+ + + W+ EI + K +LVG L+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLR 120
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
+K ++ LVG GKT V G F T+G F ++ + N IKL WD
Sbjct: 28 WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDI 83
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
GQ RFRS+ + Y R A++ + D + Q + + L + + + + VLV G
Sbjct: 84 GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 141
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L +F Q +F TI D +K EI+N+ L + DTAGQE F ++ + Y R+
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 80 AHALILVYDISCQPTFD 96
++VY ++ + +F+
Sbjct: 90 GDGFLIVYSVTDKASFE 106
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
++ LVG GKT V G F T+G F ++ + N IKL WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
RFRS+ + Y R A++ + D + Q + + L + + + + VLV G
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
++ LVG GKT V G F T+G F ++ V N IK IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
RFRS+ + Y R +A++ + D + + + + L + + + + VLV G
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGN 132
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L +F Q F TI D K ++ +L I DTAGQE F ++ + Y R+
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 80 AHALILVYDISCQPTFD----CLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAG 135
H +LV+ I+ + +F+ T LR +++ F V VLVG + L+ ++ +
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILR-VKDRDDFPV--VLVGNKADLESQRQVPRSEA 137
Query: 136 LLCTVDPALATALASDKTDLDEDE 159
+A AS K L+ DE
Sbjct: 138 SAFGASHHVAYFEASAKLRLNVDE 161
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245
NK D E R++P F H + Y E SAK NV++ F Q+
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL 166
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 13/144 (9%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+ + G AGVGK+ LV RF F T+ + + I++E + ++I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD---CLTDWLREIEEYASFKVLRVLVGGTSGLK 125
+ + R +LVYDI+ + +F+ L + L EI++ + V +LVG + L
Sbjct: 89 TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLILVGNKADLD 145
Query: 126 IVNEMASAAGLLCTVDPALATALA 149
++++ G LAT LA
Sbjct: 146 HSRQVSTEEG------EKLATELA 163
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
++++VG GKT ++ + G P TIG F ++TVE N I +WD
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDV 68
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
GQ++ R + + YY++ A+I V D
Sbjct: 69 GGQDKIRPLWRHYYQNTQAIIFVVD 93
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+++++G GKT ++++F G T+G F IKT+E + KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLG--FNIKTLE--HRGFKLNIWDVGGQK 71
Query: 68 RFRSITQSYYRSAHALILVYD 88
RS ++Y+ S LI V D
Sbjct: 72 SLRSYWRNYFESTDGLIWVVD 92
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+++++G GKT ++++F G T+G F IKT+E + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLG--FNIKTLE--HRGFKLNIWDVGGQK 73
Query: 68 RFRSITQSYYRSAHALILVYD 88
RS ++Y+ S LI V D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVD 94
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+++++G GKT ++++F G T+G F IKT+E + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLG--FNIKTLE--HRGFKLNIWDVGGQK 73
Query: 68 RFRSITQSYYRSAHALILVYD 88
RS ++Y+ S LI V D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVD 94
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L +F Q +F TI D K EI+N+ L + DTAGQE F ++ + Y R+
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 80 AHALILVYDISCQPTFD 96
++VY ++ + +F+
Sbjct: 90 GDGFLIVYSVTDKASFE 106
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L +F Q F TI D K I++ +L I DTAGQE F ++ + Y R+
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 80 AHALILVYDISCQPTFDCLTDWLREI 105
+LV+ ++ + +F+ + + R+I
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQI 102
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
++++VG GKT ++ + G P TIG F ++TVE N I +WD
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTTIP-----TIG--FNVETVEFRN--ISFTVWDVG 69
Query: 65 GQERFRSITQSYYRSAHALILVYDISCQPTFD 96
GQ++ R + + YY + LI V D + + D
Sbjct: 70 GQDKIRPLWRHYYSNTDGLIFVVDSNDRERID 101
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
++++VG GKT ++ + G P TIG F ++TVE N I +WD
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDV 51
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
GQ++ R + + Y+++ LI V D
Sbjct: 52 GGQDKIRPLWRHYFQNTQGLIFVVD 76
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
++++VG GKT ++ + G P TIG F ++TVE N I +WD
Sbjct: 22 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDVG 72
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
GQ++ R + + Y+++ LI V D
Sbjct: 73 GQDKIRPLWRHYFQNTQGLIFVVD 96
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
++++VG GKT ++ + G P TIG F ++TVE N I +WD
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ICFTVWDVG 69
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
GQ+R R + + Y+++ LI V D
Sbjct: 70 GQDRIRPLWKHYFQNTQGLIFVVD 93
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
+++++G G GKT ++ R G P TIG F ++TV N +K Q+WD
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIG--FNVETVTYKN--LKFQVWDL 53
Query: 64 AGQERFRSITQSYYRSAHALILVYDISC 91
GQ R + YY + A+I V D SC
Sbjct: 54 GGQTSIRPYWRCYYSNTDAVIYVVD-SC 80
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
++++VG GKT ++ + G P TIG F ++TVE N I +WD
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDVG 217
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
GQ++ R + + Y+++ LI V D
Sbjct: 218 GQDKIRPLWRHYFQNTQGLIFVVD 241
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 18/94 (19%)
Query: 4 YKFLF-----KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNE 54
+K LF ++++VG GKT ++ + G P TIG F ++TVE N
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN- 60
Query: 55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88
I +WD GQ++ R + + Y+++ LI V D
Sbjct: 61 -ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 18/94 (19%)
Query: 4 YKFLF-----KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNE 54
+K LF ++++VG GKT ++ + G P TIG F ++TVE N
Sbjct: 8 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN- 59
Query: 55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88
I +WD GQ++ R + + Y+++ LI V D
Sbjct: 60 -ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 92
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
+++++G GKT ++ + G Q T V F ++TV N +K +WD G
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 375
Query: 66 QERFRSITQSYYRSAHALILVYDIS 90
Q++ R + + YY LI V D +
Sbjct: 376 QDKIRPLWRHYYTGTQGLIFVVDCA 400
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
+ +++++G GKT ++++F G T+G F IKT+E + KL IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLG--FNIKTLE--HRGFKLNIWDVGGL 55
Query: 67 ERFRSITQSYYRSAHALILVYD 88
+ RS ++Y+ S LI V D
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVD 77
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L++VVL+G+ GVGKT L F G +G D +T+ ++ E L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 67 ERF-RSITQ-SYYRSAHALILVYDISCQPTFDCLTDWLREIEE-YASFKVLRVLVGGTSG 123
E+ +S +Q S + A ++VY I+ + +F+ ++ ++ + + V +LVG +
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 124 LKIVNEMASAAGLLCTV 140
L E++ G C V
Sbjct: 123 LARCREVSVEEGRACAV 139
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
++++VG G GKT ++ + G P TIG F ++ V+ N I +WD
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTIP-----TIG--FNVECVQYCN--ISFTVWDVG 69
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
GQ+R RS+ + YY + +I V D
Sbjct: 70 GQDRIRSLWRHYYCNTEGVIFVVD 93
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 23/117 (19%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFM------IKTVEINNERIK---L 58
KV L+G+ GKT L+++ F P + T G++ + IK +E N++ +K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLE-NDDELKECLF 100
Query: 59 QIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTD-----WLREIEEYAS 110
WD GQE + Q + + +L+ D TD WLR IE+Y
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLL--------LDSRTDSNKHYWLRHIEKYGG 149
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
+++++G GKT ++ + G Q T V F ++TV N +K +WD G
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 53
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
Q++ R + + YY LI V D + + D
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRID 84
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
+++++G GKT ++ + G Q T V F ++TV N +K +WD G
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 53
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
Q++ R + + YY LI V D + + D
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRID 84
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
+++++G GKT ++ + G Q T V F ++TV N +K +WD G
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 66
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
Q++ R + + YY LI V D + + D
Sbjct: 67 QDKIRPLWRHYYTGTQGLIFVVDCADRDRID 97
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+++++G G GKT ++ R G + TIG F ++T+ N +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSYKN--LKLNVWDLGGQT 73
Query: 68 RFRSITQSYYRSAHALILVYD 88
R + YY A+I V D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVD 94
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
+++++G GKT ++ + G Q T V F ++TV N +K +WD G
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 65
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
Q++ R + + YY LI V D + + D
Sbjct: 66 QDKIRPLWRHYYTGTQGLIFVVDCADRDRID 96
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
++++VG GKT ++ + G P TIG F ++TVE N I +WD
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ICFTVWDV 80
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
GQ++ R + + Y+++ LI V D
Sbjct: 81 GGQDKIRPLWRHYFQNTQGLIFVVD 105
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQ---GVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+++L+G GKT L+++ P QG F IK+V+ ++ KL +WD G
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDISHITPTQG------FNIKSVQ--SQGFKLNVWDIGG 70
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
Q + R +SY+ + LI V D + + F+
Sbjct: 71 QRKIRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
KV++VG GKT ++ +F+ TIG + ++ + INN R + WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 69 FRSITQSYYRSAHALILVYD 88
RS +YY + +I+V D
Sbjct: 73 LRSSWNTYYTNTEFVIVVVD 92
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQ---GVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+++L+G GKT L+++ P QG F IK+V+ ++ KL +WD G
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQG------FNIKSVQ--SQGFKLNVWDIGG 69
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
Q + R +SY+ + LI V D + + F+
Sbjct: 70 QRKIRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
KV++VG GKT ++ +F+ TIG + ++ + INN R + WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 69 FRSITQSYYRSAHALILVYD 88
RS +YY + +I+V D
Sbjct: 73 LRSSWNTYYTNTEFVIVVVD 92
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
KV++VG GKT ++ +F+ TIG + ++ + INN R + WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSN--VEEIVINNTRFLM--WDIGGQES 78
Query: 69 FRSITQSYYRSAHALILVYD 88
RS +YY + +I+V D
Sbjct: 79 LRSSWNTYYTNTEFVIVVVD 98
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
KV++VG GKT ++ +F+ TIG + ++ + INN R + WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSN--VEEIVINNTRFLM--WDIGGQES 77
Query: 69 FRSITQSYYRSAHALILVYD 88
RS +YY + +I+V D
Sbjct: 78 LRSSWNTYYTNTEFVIVVVD 97
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQ---GVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+++L+G GKT L+++ P QG F IK+V+ ++ KL +WD G
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQG------FNIKSVQ--SQGFKLNVWDIGG 57
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
Q + R +SY+ + LI V D + + F+
Sbjct: 58 QRKIRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAGQ 66
+++ +G GKT ++ + G Q T V F ++TV N +K +WD GQ
Sbjct: 2 RILXLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGGQ 54
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFD 96
++ R + + YY LI V D + + D
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRID 84
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 19 GKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYR 78
GKT ++++F G T+G F IKT+E + KL IWD GQ+ RS ++Y+
Sbjct: 30 GKTTILKKF-NGEDVDTISPTLG--FNIKTLE--HRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 79 SAHALILVYD 88
S LI V D
Sbjct: 85 STDGLIWVVD 94
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
++++VG GKT ++ + G P TIG F ++TVE N I +WD
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDV 53
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
G ++ R + + Y+++ LI V D
Sbjct: 54 GGLDKIRPLWRHYFQNTQGLIFVVD 78
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG S L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
+++++G G GKT ++ R G P TIG F ++TV N +K Q+WD
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIG--FNVETVTYKN--LKFQVWDL 55
Query: 64 AGQERFRSITQSYYRSAHALILVYDISC 91
G R + YY + A+I V D SC
Sbjct: 56 GGLTSIRPYWRCYYSNTDAVIYVVD-SC 82
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG S L
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D R + T+ +D A+ + + ++ETSAK V+ F + E+
Sbjct: 117 NKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG S L
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D R + T+ +D A+ + + ++ETSAK V+ F + E+
Sbjct: 117 NKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 47 KTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
K V I+ E L I DTAGQE + ++ Y R+ + V+ I+ +F+ + + +I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 107 EYA-SFKVLRVLVGGTSGL 124
S V VLVG S L
Sbjct: 102 RVKDSDDVPMVLVGNKSDL 120
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
Length = 172
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
+++++G GKT ++ + G Q T V F ++TV N +K +WD G
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 55
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
++ R + + YY LI V D + + D
Sbjct: 56 LDKIRPLWRHYYTGTQGLIFVVDCADRDRID 86
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64
+++++G G GKT ++ R G P TIG F ++TV N +K Q+WD
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTIP-----TIG--FNVETVTYKN--LKFQVWDLG 59
Query: 65 GQERFRSITQSYYRSAHALILVYDISC 91
G R + YY + A+I V D SC
Sbjct: 60 GLTSIRPYWRCYYSNTDAVIYVVD-SC 85
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
+++++G GKT ++ + G Q T V F ++TV N +K +WD G
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 56
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
++ R + + YY LI V D + + D
Sbjct: 57 LDKIRPLWRHYYTGTQGLIFVVDCADRDRID 87
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
++KV+L+G GVGK+ L R F G G A +++ ++ E L ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW---LREIEEYASFKVLRVLVGGTSG 123
+ R + A ++VY ++ + +F+ ++ LR + + +LVG S
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI--ILVGNKSD 122
Query: 124 LKIVNEMASAAGLLCTV 140
L E++ G C V
Sbjct: 123 LVRSREVSVDEGRACAV 139
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI--GVDFMIKTVEINNERIKLQIWDTAG 65
+++++G GKT ++ + G Q T V F ++TV N +K +WD G
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVETVTYKN--VKFNVWDVGG 66
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
++ R + + YY LI V D + + D
Sbjct: 67 LDKIRPLWRHYYTGTQGLIFVVDCADRDRID 97
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
++KV+L+G GVGK+ L R F G G A +++ ++ E L ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 59
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW---LREIEEYASFKVLRVLVGGTSG 123
+ R + A ++VY ++ + +F+ ++ LR + + +LVG S
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI--ILVGNKSD 117
Query: 124 LKIVNEMASAAGLLCTV 140
L E++ G C V
Sbjct: 118 LVRSREVSVDEGRACAV 134
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
NK D R + + +D A+ + + Y+ETSAK VE F + E+ + KL
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
NK D R + + +D A+ + + Y+ETSAK VE F + E+ + KL
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQ 165
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 47 KTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
K V I+ E L I DTAGQE + ++ Y R+ + V+ I+ +F+ + + +I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 107 EYA-SFKVLRVLVGGTSGL 124
S V VLVG L
Sbjct: 102 RVKDSDDVPMVLVGNKCDL 120
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMH 261
NK D R + + +D A+ + + Y+ETSAK VE F + E+ + KL
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPD 175
Query: 262 DRGVGMLT 269
+ G G ++
Sbjct: 176 ESGPGCMS 183
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQ---GVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+++L+G GKT L+++ P QG F IK+V+ ++ KL +WD G
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQG------FNIKSVQ--SQGFKLNVWDIGG 57
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFD 96
+ R +SY+ + LI V D + + F+
Sbjct: 58 LRKIRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL 120
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
N+ D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NRCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 47 KTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
K V I+ E L I DTAGQE + ++ Y R+ + V+ I+ +F+ + + +I+
Sbjct: 48 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 107
Query: 107 EYA-SFKVLRVLVGGTSGL 124
S V VLVG L
Sbjct: 108 RVKDSDDVPMVLVGNKCDL 126
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 122 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 171
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
++KV+L+G GVGK+ L R F G G A +++ ++ E L ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW---LREIEEYASFKVLRVLVGGTSG 123
+ R + A ++VY ++ + +F+ ++ LR + + +LVG S
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI--ILVGNKSD 122
Query: 124 LKIVNEMASAAGLLCTV 140
L E++ G C V
Sbjct: 123 LVRSREVSVDEGRACAV 139
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 47 KTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
K V I+ E L I DTAGQE + ++ Y R+ + V+ I+ +F+ + + +I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 107 EYA-SFKVLRVLVGGTSGL 124
S V VLVG L
Sbjct: 102 RVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPP--GQGATIGVDFMIKTVEINNER---IKLQIWD 62
++VVL+G GVGK+ L F GV +G D +T+ ++ E I L +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFA-GVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW---LREIEEYASFKVLRVLVG 119
G+ + + + A ++VY I+ + +F+ ++ LR + + +LVG
Sbjct: 97 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI--ILVG 152
Query: 120 GTSGLKIVNEMASAAGLLCTV 140
S L E++ + G C V
Sbjct: 153 NKSDLVRCREVSVSEGRACAV 173
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI + K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 47 KTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
K V I+ E L I DTAGQE + ++ Y R+ + V+ I+ +F+ + + +I+
Sbjct: 47 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 107 EYA-SFKVLRVLVGGTSGL 124
S V VLVG L
Sbjct: 107 RVKDSDDVPMVLVGNKCDL 125
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 121 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 47 KTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
K V I+ E L I DTAGQE + ++ Y R+ + V+ I+ +F+ + + +I+
Sbjct: 47 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 107 EYA-SFKVLRVLVGGTSGL 124
S V VLVG L
Sbjct: 107 RVKDSDDVPMVLVGNKCDL 125
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 121 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 47 KTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
K V I+ E L I DTAGQE + ++ Y R+ + V+ I+ +F+ + + +I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 107 EYA-SFKVLRVLVGGTSGL 124
S V VLVG L
Sbjct: 102 RVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 47 KTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
K V I+ E L I DTAGQE + ++ Y R+ + V+ I+ +F+ + + +I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 107 EYA-SFKVLRVLVGGTSGL 124
S V VLVG L
Sbjct: 102 RVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL-------KIVNEMA 131
+ V+ I+ +F + + +I+ S V VLVG L K +E+A
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA 152
Query: 132 SAAGL 136
+ G+
Sbjct: 153 KSYGI 157
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
NK D R + T+ + AK + + ++ETSAK VE F + E+ + +KL
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 47 KTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106
K V I+ E L I DTAGQE + ++ Y R+ + V+ I+ +F+ + + +I+
Sbjct: 49 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 108
Query: 107 EYA-SFKVLRVLVGGTSGL 124
S V VLVG L
Sbjct: 109 RVKDSDDVPMVLVGNKCDL 127
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 123 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 172
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
KV++VG GKT ++ +F TIG + EI + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVH-TSPTIGSN----VEEIVVKNTHFLMWDIGGQES 72
Query: 69 FRSITQSYYRSAHALILVYD 88
RS +YY + +ILV D
Sbjct: 73 LRSSWNTYYSNTEFIILVVD 92
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPP--GQGATIGVDFMIKTVEINNER---IKLQIWD 62
++VVL+G GVGK+ L F GV +G D +T+ ++ E I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFA-GVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW---LREIEEYASFKVLRVLVG 119
G+ + + + A ++VY I+ + +F+ ++ LR + + +LVG
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI--ILVG 121
Query: 120 GTSGLKIVNEMASAAGLLCTV 140
S L E++ + G C V
Sbjct: 122 NKSDLVRCREVSVSEGRACAV 142
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DT GQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGA----TIGVDFMIKTVEINNERI 56
M K +VV+ G GKT ++ + P Q + T V + ++T E R+
Sbjct: 11 MGQSKTKLQVVMCGLDNSGKTTIINQV-----KPAQSSSKHITATVGYNVETFE--KGRV 63
Query: 57 KLQIWDTAGQERFRSITQSYYRSAHALILVYDIS 90
++D G ++FR + ++YY + A+I V D S
Sbjct: 64 AFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSS 97
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAG+E + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DT GQE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAG E + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTA QE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAGQE ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTA QE + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAG E + ++ Y R+
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 138
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D R + T+ +D A+ + + ++ETSAK V+ F + E+
Sbjct: 134 NKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPP--GQGATIGVDFMIKTVEINNER---IKLQIWD 62
++VVL+G GVGK+ L F GV +G D +T+ ++ E I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFA-GVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW---LREIEEYASFKVLRVLVG 119
G+ + + + A ++VY I+ + +F+ ++ LR + + +LVG
Sbjct: 66 NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI--ILVG 121
Query: 120 GTSGLKIVNEMASAAG 135
S L E++ + G
Sbjct: 122 NKSDLVRXREVSVSEG 137
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 10 VVLVGNAGVGKTCLVRRF------TQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
V+ +G GKT ++ + +Q + P TIG F I+ + + + ++D
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILP-----TIG--FSIE--KFKSSSLSFTVFDM 74
Query: 64 AGQERFRSITQSYYRSAHALILVYDIS 90
+GQ R+R++ + YY+ A+I V D S
Sbjct: 75 SGQGRYRNLWEHYYKEGQAIIFVIDSS 101
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPP--GQGATIGVDFMIKTVEINNER---IKLQIWD 62
++VVL+G GVGK+ L F GV +G D +T+ ++ E I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFA-GVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW---LREIEEYASFKVLRVLVG 119
G+ + + + A ++VY I+ + +F+ ++ LR + + +LVG
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI--ILVG 121
Query: 120 GTSGLKIVNEMASAAG 135
S L E++ + G
Sbjct: 122 NKSDLVRXREVSVSEG 137
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAG E + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAG E + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAG E + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAG E + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAG E + ++ Y R+
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ L + Q F TI D K V I+ E L I DTAG E + ++ Y R+
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 80 AHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGL 124
+ V+ I+ +F+ + + +I+ S V VLVG L
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 121 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 20 KTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79
K+ LV RF +G F TI D + + + LQI DT G +F ++ +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 80 AHALILVYDISCQPTFD 96
HA ILV+ ++ + + +
Sbjct: 80 GHAFILVFSVTSKQSLE 96
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 186 LASLEGHSNNIHCM-ARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244
+ ++G +I M NK D RE+ T + A+ ++ETSAK + NV++LF +
Sbjct: 105 IVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164
Query: 245 I 245
+
Sbjct: 165 L 165
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 6 FLFKVVLVGNAGVGKTCLVRR-FTQGVFP----PGQGATI--GVDFMIKTVEINNERIKL 58
F F +++VG +G+GK+ L+ F ++P PG I V TVEI +KL
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 59 Q--IWDTAG 65
+ + DT G
Sbjct: 64 RLTVVDTPG 72
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE--RIKLQIWDTAGQ 66
K VLVG G GK+ + RR + +GV + V I R I+ T G+
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAKA---------LGVGLLDTDVAIEQRTGRSIADIFATDGE 54
Query: 67 ERFRSITQSYYRSAHA 82
+ FR I + R+A A
Sbjct: 55 QEFRRIEEDVVRAALA 70
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate And Adp At
2.15 Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate And Amppcp
At 2.85 Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate At 1.75
Angstrom Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE--RIKLQIWDTAGQ 66
K VLVG G GK+ + RR + +GV + V I R I+ T G+
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAKA---------LGVGLLDTDVAIEQRTGRSIADIFATDGE 54
Query: 67 ERFRSITQSYYRSAHA 82
+ FR I + R+A A
Sbjct: 55 QEFRRIEEDVVRAALA 70
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 6 FLFKVVLVGNAGVGKTCLVRR-FTQGVFP----PGQGATI--GVDFMIKTVEINNERIKL 58
F F +++VG +G+GK+ L+ F ++P PG I V TVEI +KL
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 59 Q--IWDTAG 65
+ + DT G
Sbjct: 96 RLTVVDTPG 104
>pdb|2W82|A Chain A, The Structure Of Arda
pdb|2W82|B Chain B, The Structure Of Arda
pdb|2W82|C Chain C, The Structure Of Arda
pdb|2W82|D Chain D, The Structure Of Arda
Length = 165
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 636 IPFNAEEFSDVNELRALADLIGPYGMKLLNELS--LKAFNAAHEMVHNQSDV 685
+PF +E++ + EL L +++ +L +ELS L F++ E+ +Q D+
Sbjct: 53 LPFTVDEYTSIGELNRLWEMVSELPEELQSELSALLTHFSSIEELSEHQEDI 104
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI-----GVDFMIKTVEINNERIKLQIW 61
+FKV+LVG +GVGK+ L G F QG D + + ++ E + L ++
Sbjct: 2 VFKVMLVGESGVGKSTLA-----GTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVY 56
Query: 62 DTAGQERFRSITQSY-YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRV-LVG 119
D Q Q + ++ A ++V+ ++ + +F + + L + L V LVG
Sbjct: 57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116
Query: 120 GTSGLKIVNEMASAAG 135
S L E++ G
Sbjct: 117 NKSDLARSREVSLEEG 132
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 282 KSKPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVD 335
+S P F S+ +E KKFPN + V G+ ++ D + Y +FV+
Sbjct: 255 ESDPGFFSNAIVEGA-----KKFPNTEFVKVKGLHFLQEDAPDEMGKYIKSFVE 303
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 282 KSKPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVD 335
+S P F S+ +E KKFPN + V G+ ++ D + Y +FV+
Sbjct: 256 ESDPGFFSNAIVEGA-----KKFPNTEFVKVKGLHFLQEDAPDEMGKYIKSFVE 304
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 282 KSKPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVD 335
+S P F S+ +E KKFPN + V G+ ++ D + Y +FV+
Sbjct: 255 ESDPGFFSNAIVEGA-----KKFPNTEFVKVKGLHFLQEDAPDEMGKYIKSFVE 303
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI-----GVDFMIKTVEINNERIKLQIW 61
+FKV+LVG +GVGK+ L G F QG + D + + ++ E + L ++
Sbjct: 23 IFKVMLVGESGVGKSTLA-----GTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77
Query: 62 DTAGQERFRSITQSY-YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRV-LVG 119
D Q + + ++ A ++V+ ++ + +F + + L + L V LVG
Sbjct: 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137
Query: 120 GTSGLKIVNEMASAAG 135
S L E++ G
Sbjct: 138 NKSDLARSREVSLEEG 153
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF--PPGQGATIGVDFMIKTVEI--NNERIKLQIW 61
F F ++ VG G+GK+ L+ F P GV T ++ +N R+KL I
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIV 100
Query: 62 DTAG 65
T G
Sbjct: 101 STVG 104
>pdb|1V57|A Chain A, Crystal Structure Of The Disulfide Bond Isomerase Dsbg
pdb|1V57|B Chain B, Crystal Structure Of The Disulfide Bond Isomerase Dsbg
pdb|1V58|A Chain A, Crystal Structure Of The Reduced Protein Disulfide Bond
Isomerase Dsbg
pdb|1V58|B Chain B, Crystal Structure Of The Reduced Protein Disulfide Bond
Isomerase Dsbg
Length = 241
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 33 PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYY-----RSAHALILVY 87
P G+ A G + K ++N I+ +I+ AG+E ++ + QS++ + A ++ V+
Sbjct: 45 PDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVF 104
Query: 88 DISCQPTFDCLTDWLREIEEYASFKV-LRVLVGGTSGLKIVNEMASAAGLLCTVDPA 143
P C W + S KV LR L+ G+ A+AA +L + DPA
Sbjct: 105 ADPFCPY--CKQFWQQARPWVDSGKVQLRTLL---VGVIKPESPATAAAILASKDPA 156
>pdb|2H0G|A Chain A, Crystal Structure Of Dsbg T200m Mutant
pdb|2H0G|B Chain B, Crystal Structure Of Dsbg T200m Mutant
Length = 237
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 33 PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYY-----RSAHALILVY 87
P G+ A G + K ++N I+ +I+ AG+E ++ + QS++ + A ++ V+
Sbjct: 45 PDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVF 104
Query: 88 DISCQPTFDCLTDWLREIEEYASFKV-LRVLVGGTSGLKIVNEMASAAGLLCTVDPA 143
P C W + S KV LR L+ G+ A+AA +L + DPA
Sbjct: 105 ADPFCPY--CKQFWQQARPWVDSGKVQLRTLL---VGVIKPESPATAAAILASKDPA 156
>pdb|2H0I|A Chain A, Crystal Structure Of Dsbg V216m Mutant
pdb|2H0I|B Chain B, Crystal Structure Of Dsbg V216m Mutant
Length = 237
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 33 PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYY-----RSAHALILVY 87
P G+ A G + K ++N I+ +I+ AG+E ++ + QS++ + A ++ V+
Sbjct: 45 PDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVF 104
Query: 88 DISCQPTFDCLTDWLREIEEYASFKV-LRVLVGGTSGLKIVNEMASAAGLLCTVDPA 143
P C W + S KV LR L+ G+ A+AA +L + DPA
Sbjct: 105 ADPFCPY--CKQFWQQARPWVDSGKVQLRTLL---VGVIKPESPATAAAILASKDPA 156
>pdb|2H0H|A Chain A, Crystal Structure Of Dsbg K113e Mutant
pdb|2H0H|B Chain B, Crystal Structure Of Dsbg K113e Mutant
Length = 237
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 33 PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYY-----RSAHALILVY 87
P G+ A G + K ++N I+ +I+ AG+E ++ + QS++ + A ++ V+
Sbjct: 45 PDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVF 104
Query: 88 DISCQPTFDCLTDWLREIEEYASFKV-LRVLVGGTSGLKIVNEMASAAGLLCTVDPA 143
P C W + S KV LR L+ G+ A+AA +L + DPA
Sbjct: 105 ADPFCPY--CEQFWQQARPWVDSGKVQLRTLL---VGVIKPESPATAAAILASKDPA 156
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI-----GVDFMIKTVEINNERIKLQIW 61
+FKV+L+G +GVGK+ L G F QG D + + ++ E + L ++
Sbjct: 12 VFKVMLLGESGVGKSTLA-----GTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVY 66
Query: 62 DTAGQERFRSITQSY-YRSAHALILVYDISCQPTF 95
D Q Q + ++ A ++V+ ++ + +F
Sbjct: 67 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSF 101
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+V+++G GKT ++ R G V ++T++ N I ++WD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLG---DVVTTVPTVGVNLETLQYKN--ISFEVWDLGGQT 77
Query: 68 RFRSITQSYYRSAHALILVYD 88
R + Y+ A+I V D
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVD 98
>pdb|1JLV|A Chain A, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|B Chain B, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|C Chain C, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|D Chain D, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|E Chain E, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|F Chain F, Anopheles Dirus Species B Glutathione S-transferases 1-3
Length = 209
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 153 TDLDEDEHVLACLLMVFVAVCIPKLARN--------EACFYLASLEGHSNNIHCMARNKI 204
T+L EH+ L + CIP L N C YLA G + ++ K
Sbjct: 31 TNLMAGEHMKPEFLKINPQHCIPTLVDNGFALWESRAICTYLAEKYGKDDKLYPKDPQKR 90
Query: 205 DREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE 239
++ + ++G + + D YY + AK N E
Sbjct: 91 AVVNQRLYFDMGTLYQRFADYYYPQIFAKQPANAE 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,657,465
Number of Sequences: 62578
Number of extensions: 692027
Number of successful extensions: 2351
Number of sequences better than 100.0: 356
Number of HSP's better than 100.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1652
Number of HSP's gapped (non-prelim): 561
length of query: 730
length of database: 14,973,337
effective HSP length: 106
effective length of query: 624
effective length of database: 8,340,069
effective search space: 5204203056
effective search space used: 5204203056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)