Query psy17467
Match_columns 730
No_of_seqs 417 out of 2155
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:16:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1917|consensus 100.0 3.2E-76 7E-81 665.6 19.8 238 386-689 636-877 (1125)
2 PF09735 Nckap1: Membrane-asso 100.0 8.7E-68 1.9E-72 633.6 15.6 244 386-700 635-882 (1116)
3 KOG0084|consensus 100.0 1.2E-33 2.5E-38 279.7 18.4 173 2-255 4-177 (205)
4 KOG0078|consensus 100.0 7.6E-32 1.6E-36 269.7 20.8 173 2-255 7-179 (207)
5 KOG0098|consensus 100.0 1E-31 2.2E-36 263.5 18.2 175 4-259 3-177 (216)
6 KOG0094|consensus 100.0 5.2E-31 1.1E-35 260.3 18.1 167 6-252 21-187 (221)
7 cd04121 Rab40 Rab40 subfamily. 100.0 2.1E-30 4.6E-35 258.9 21.7 166 3-250 2-167 (189)
8 KOG0092|consensus 100.0 7.4E-31 1.6E-35 259.0 16.9 170 5-255 3-172 (200)
9 KOG0394|consensus 100.0 7.3E-31 1.6E-35 257.1 15.1 177 4-255 6-183 (210)
10 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.2E-30 9.1E-35 255.0 20.5 175 4-249 2-179 (182)
11 KOG0080|consensus 100.0 1.8E-30 3.8E-35 249.3 16.5 168 3-251 7-175 (209)
12 KOG0095|consensus 100.0 4.8E-30 1E-34 243.7 16.7 173 1-254 1-173 (213)
13 KOG0087|consensus 100.0 1.1E-29 2.4E-34 253.7 17.7 177 2-259 9-185 (222)
14 cd04131 Rnd Rnd subfamily. Th 100.0 2.2E-29 4.7E-34 248.5 19.5 172 8-250 2-176 (178)
15 KOG0086|consensus 100.0 1.1E-29 2.5E-34 242.0 15.1 175 2-257 4-178 (214)
16 KOG0079|consensus 100.0 7.5E-30 1.6E-34 242.1 13.8 171 3-255 4-174 (198)
17 cd04120 Rab12 Rab12 subfamily. 100.0 9.4E-29 2E-33 249.7 22.4 163 8-251 1-164 (202)
18 KOG0091|consensus 100.0 1.5E-29 3.2E-34 243.5 15.4 186 4-269 5-192 (213)
19 cd04133 Rop_like Rop subfamily 100.0 5.4E-29 1.2E-33 246.0 18.9 169 8-249 2-172 (176)
20 cd04122 Rab14 Rab14 subfamily. 100.0 1.2E-28 2.5E-33 237.2 20.4 163 7-250 2-164 (166)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 9.9E-29 2.2E-33 254.9 20.8 177 5-252 11-190 (232)
22 cd01875 RhoG RhoG subfamily. 100.0 1.4E-28 3E-33 244.5 21.0 173 7-250 3-177 (191)
23 cd04127 Rab27A Rab27a subfamil 100.0 2.3E-28 4.9E-33 237.4 20.9 168 4-251 1-178 (180)
24 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.8E-28 3.9E-33 240.5 20.0 171 7-249 1-174 (175)
25 PRK03003 GTP-binding protein D 100.0 2.3E-29 5E-34 283.5 15.6 245 6-347 210-466 (472)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3E-28 6.5E-33 238.1 20.1 164 7-251 2-165 (172)
27 cd01867 Rab8_Rab10_Rab13_like 100.0 4.4E-28 9.4E-33 233.7 20.2 165 5-250 1-165 (167)
28 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 8.2E-28 1.8E-32 240.0 21.6 171 8-255 1-173 (201)
29 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.6E-27 3.5E-32 228.5 20.4 164 6-250 1-164 (166)
30 cd04111 Rab39 Rab39 subfamily. 100.0 2.6E-27 5.7E-32 239.7 22.4 181 6-266 1-182 (211)
31 cd01865 Rab3 Rab3 subfamily. 100.0 2.3E-27 4.9E-32 228.3 20.5 162 8-250 2-163 (165)
32 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.5E-27 3.1E-32 244.7 20.2 173 8-251 2-177 (222)
33 cd01871 Rac1_like Rac1-like su 100.0 2.1E-27 4.6E-32 232.7 19.8 170 8-248 2-173 (174)
34 cd04117 Rab15 Rab15 subfamily. 100.0 2.7E-27 5.9E-32 227.8 20.3 160 8-248 1-160 (161)
35 PF00071 Ras: Ras family; Int 100.0 3.2E-27 6.9E-32 224.9 20.4 161 9-250 1-161 (162)
36 KOG0093|consensus 100.0 6.4E-28 1.4E-32 228.8 14.9 172 3-255 17-188 (193)
37 cd04136 Rap_like Rap-like subf 100.0 2.3E-27 4.9E-32 225.3 18.6 161 8-249 2-162 (163)
38 cd01868 Rab11_like Rab11-like. 100.0 4.5E-27 9.9E-32 224.8 20.5 164 5-249 1-164 (165)
39 COG1160 Predicted GTPases [Gen 100.0 5.4E-29 1.2E-33 273.0 7.8 253 7-355 178-444 (444)
40 cd04110 Rab35 Rab35 subfamily. 100.0 5.3E-27 1.1E-31 234.4 21.3 170 3-254 2-171 (199)
41 cd04119 RJL RJL (RabJ-Like) su 100.0 6.1E-27 1.3E-31 222.2 20.2 167 8-250 1-167 (168)
42 PLN03071 GTP-binding nuclear p 100.0 3.6E-27 7.7E-32 240.2 19.4 162 5-250 11-172 (219)
43 PTZ00369 Ras-like protein; Pro 100.0 6.3E-27 1.4E-31 231.5 20.6 167 7-254 5-171 (189)
44 cd04109 Rab28 Rab28 subfamily. 100.0 6.2E-27 1.3E-31 236.8 20.9 167 8-252 1-168 (215)
45 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.2E-27 1.1E-31 232.2 19.8 166 8-250 1-166 (182)
46 PLN03110 Rab GTPase; Provision 99.9 1.1E-26 2.3E-31 235.9 22.2 170 4-254 9-178 (216)
47 TIGR03594 GTPase_EngA ribosome 99.9 1.4E-27 3E-32 264.4 17.0 247 6-346 171-429 (429)
48 cd04175 Rap1 Rap1 subgroup. T 99.9 5.8E-27 1.3E-31 224.2 19.0 161 8-249 2-162 (164)
49 cd04134 Rho3 Rho3 subfamily. 99.9 7E-27 1.5E-31 231.5 19.6 171 9-250 2-174 (189)
50 PLN03108 Rab family protein; P 99.9 1.4E-26 3.1E-31 233.8 22.2 173 1-255 1-173 (210)
51 smart00174 RHO Rho (Ras homolo 99.9 6.3E-27 1.4E-31 225.7 18.5 170 10-250 1-172 (174)
52 cd04144 Ras2 Ras2 subfamily. 99.9 6.7E-27 1.5E-31 231.5 19.1 166 9-253 1-166 (190)
53 cd04106 Rab23_lke Rab23-like s 99.9 1.1E-26 2.4E-31 220.7 19.6 158 8-247 1-160 (162)
54 cd01866 Rab2 Rab2 subfamily. 99.9 2.1E-26 4.6E-31 222.5 21.5 166 4-250 1-166 (168)
55 cd04176 Rap2 Rap2 subgroup. T 99.9 9.2E-27 2E-31 222.3 18.7 161 8-249 2-162 (163)
56 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.6E-26 3.4E-31 225.5 20.5 164 9-250 2-165 (170)
57 cd01864 Rab19 Rab19 subfamily. 99.9 1.6E-26 3.5E-31 221.7 20.1 163 5-248 1-164 (165)
58 cd01873 RhoBTB RhoBTB subfamil 99.9 6.3E-27 1.4E-31 234.9 18.0 177 7-248 2-194 (195)
59 cd04132 Rho4_like Rho4-like su 99.9 1.4E-26 3E-31 226.9 19.8 169 8-255 1-172 (187)
60 cd04116 Rab9 Rab9 subfamily. 99.9 2.2E-26 4.7E-31 221.6 20.7 167 4-248 2-169 (170)
61 KOG0081|consensus 99.9 3.3E-28 7.1E-33 233.3 7.8 175 2-256 4-187 (219)
62 cd04113 Rab4 Rab4 subfamily. 99.9 2.2E-26 4.8E-31 219.2 19.4 160 8-248 1-160 (161)
63 cd04124 RabL2 RabL2 subfamily. 99.9 3.1E-26 6.8E-31 220.2 20.0 160 8-252 1-160 (161)
64 cd04125 RabA_like RabA-like su 99.9 4.9E-26 1.1E-30 224.2 21.1 165 8-253 1-165 (188)
65 cd04140 ARHI_like ARHI subfami 99.9 3.2E-26 7E-31 220.3 19.4 161 8-247 2-162 (165)
66 cd04118 Rab24 Rab24 subfamily. 99.9 3.9E-26 8.5E-31 225.1 20.2 167 8-252 1-168 (193)
67 cd04138 H_N_K_Ras_like H-Ras/N 99.9 4.5E-26 9.8E-31 215.0 19.3 160 8-249 2-161 (162)
68 smart00173 RAS Ras subfamily o 99.9 4.1E-26 8.9E-31 217.6 19.1 162 8-250 1-162 (164)
69 cd04115 Rab33B_Rab33A Rab33B/R 99.9 5.9E-26 1.3E-30 219.8 20.2 163 7-249 2-168 (170)
70 cd04145 M_R_Ras_like M-Ras/R-R 99.9 5.8E-26 1.3E-30 215.9 19.8 162 7-249 2-163 (164)
71 cd04130 Wrch_1 Wrch-1 subfamil 99.9 4.3E-26 9.3E-31 221.4 18.9 169 8-247 1-171 (173)
72 cd04103 Centaurin_gamma Centau 99.9 2.8E-26 6.1E-31 221.9 17.1 156 8-248 1-157 (158)
73 smart00176 RAN Ran (Ras-relate 99.9 4.7E-26 1E-30 229.8 19.2 155 13-251 1-155 (200)
74 cd04112 Rab26 Rab26 subfamily. 99.9 8.4E-26 1.8E-30 223.9 20.3 164 8-252 1-165 (191)
75 KOG0097|consensus 99.9 4.2E-26 9.1E-31 215.2 16.6 173 3-256 7-179 (215)
76 cd04135 Tc10 TC10 subfamily. 99.9 8E-26 1.7E-30 218.0 18.9 171 8-249 1-173 (174)
77 PRK00093 GTP-binding protein D 99.9 2.9E-26 6.4E-31 254.7 17.4 247 6-347 172-430 (435)
78 cd00877 Ran Ran (Ras-related n 99.9 1.5E-25 3.3E-30 217.3 20.1 159 8-250 1-159 (166)
79 cd04126 Rab20 Rab20 subfamily. 99.9 1.6E-25 3.4E-30 229.3 20.6 182 8-256 1-196 (220)
80 cd04101 RabL4 RabL4 (Rab-like4 99.9 2E-25 4.4E-30 212.9 20.0 160 8-249 1-163 (164)
81 KOG0393|consensus 99.9 1.4E-26 3E-31 232.1 11.9 175 6-251 3-180 (198)
82 cd04142 RRP22 RRP22 subfamily. 99.9 1.1E-25 2.4E-30 226.1 18.4 166 8-251 1-175 (198)
83 smart00175 RAB Rab subfamily o 99.9 3.6E-25 7.8E-30 210.1 20.4 163 8-251 1-163 (164)
84 KOG0088|consensus 99.9 1.5E-26 3.3E-31 221.8 10.6 171 4-255 10-180 (218)
85 PRK09518 bifunctional cytidyla 99.9 3.6E-26 7.9E-31 269.2 16.1 244 6-347 449-705 (712)
86 KOG0083|consensus 99.9 4.5E-27 9.8E-32 220.0 6.5 157 12-250 2-160 (192)
87 cd01861 Rab6 Rab6 subfamily. 99.9 5E-25 1.1E-29 209.2 19.9 160 8-248 1-160 (161)
88 cd01863 Rab18 Rab18 subfamily. 99.9 5.4E-25 1.2E-29 209.3 19.5 160 8-248 1-160 (161)
89 PLN03118 Rab family protein; P 99.9 1E-24 2.3E-29 219.5 21.4 169 3-252 10-179 (211)
90 cd01870 RhoA_like RhoA-like su 99.9 7.9E-25 1.7E-29 211.3 19.3 171 8-249 2-174 (175)
91 cd04177 RSR1 RSR1 subgroup. R 99.9 9.4E-25 2E-29 210.8 19.4 162 8-250 2-164 (168)
92 cd01860 Rab5_related Rab5-rela 99.9 1.8E-24 4E-29 205.7 20.6 162 7-249 1-162 (163)
93 cd01892 Miro2 Miro2 subfamily. 99.9 4.4E-25 9.6E-30 214.9 16.7 163 5-250 2-166 (169)
94 cd01862 Rab7 Rab7 subfamily. 99.9 1.9E-24 4E-29 207.1 20.6 168 8-252 1-169 (172)
95 cd04146 RERG_RasL11_like RERG/ 99.9 5.6E-25 1.2E-29 211.1 16.9 161 9-249 1-163 (165)
96 cd04114 Rab30 Rab30 subfamily. 99.9 2.8E-24 6E-29 206.0 21.6 168 1-249 1-168 (169)
97 KOG0395|consensus 99.9 4.3E-25 9.3E-30 222.6 16.4 164 7-251 3-166 (196)
98 cd04123 Rab21 Rab21 subfamily. 99.9 2.6E-24 5.6E-29 203.0 20.2 161 8-249 1-161 (162)
99 cd04148 RGK RGK subfamily. Th 99.9 1.4E-24 3E-29 221.5 18.8 163 8-252 1-165 (221)
100 cd04143 Rhes_like Rhes_like su 99.9 3.6E-24 7.9E-29 222.7 19.3 169 8-249 1-170 (247)
101 cd04139 RalA_RalB RalA/RalB su 99.9 1.3E-23 2.8E-28 199.0 19.1 162 8-250 1-162 (164)
102 COG1163 DRG Predicted GTPase [ 99.9 5.1E-24 1.1E-28 224.8 16.8 245 8-309 64-332 (365)
103 cd00154 Rab Rab family. Rab G 99.9 2.7E-23 5.9E-28 193.4 19.2 158 8-246 1-158 (159)
104 cd04129 Rho2 Rho2 subfamily. 99.9 1.8E-23 4E-28 206.5 18.9 170 8-250 2-173 (187)
105 cd00157 Rho Rho (Ras homology) 99.9 2.3E-23 4.9E-28 199.4 18.9 168 8-247 1-170 (171)
106 cd04149 Arf6 Arf6 subfamily. 99.9 1.5E-23 3.2E-28 204.2 16.6 155 6-247 8-167 (168)
107 cd04158 ARD1 ARD1 subfamily. 99.9 1.9E-23 4.2E-28 202.6 16.9 156 9-251 1-162 (169)
108 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.9E-23 1.1E-27 203.0 18.8 165 7-254 3-174 (183)
109 PTZ00132 GTP-binding nuclear p 99.9 8.5E-23 1.8E-27 206.0 20.8 164 3-250 5-168 (215)
110 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 8.4E-24 1.8E-28 204.9 11.8 156 10-247 2-163 (164)
111 cd04147 Ras_dva Ras-dva subfam 99.9 7.7E-23 1.7E-27 204.0 18.2 162 9-250 1-163 (198)
112 cd04137 RheB Rheb (Ras Homolog 99.9 1.3E-22 2.9E-27 197.2 19.4 162 8-250 2-163 (180)
113 PLN00223 ADP-ribosylation fact 99.9 7.8E-23 1.7E-27 202.1 17.8 156 6-251 16-179 (181)
114 smart00177 ARF ARF-like small 99.9 1.4E-22 3E-27 198.5 17.6 156 7-249 13-173 (175)
115 cd00876 Ras Ras family. The R 99.9 1.8E-22 4E-27 190.0 17.8 159 9-248 1-159 (160)
116 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1E-22 2.2E-27 196.2 16.3 153 8-247 1-158 (159)
117 cd01893 Miro1 Miro1 subfamily. 99.9 2E-22 4.4E-27 194.4 17.4 161 8-250 1-164 (166)
118 cd04154 Arl2 Arl2 subfamily. 99.9 1.7E-22 3.6E-27 196.3 16.7 156 5-247 12-172 (173)
119 PTZ00133 ADP-ribosylation fact 99.9 2.9E-22 6.2E-27 198.0 17.7 159 7-252 17-180 (182)
120 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.5E-22 5.4E-27 203.3 17.6 138 8-157 1-143 (202)
121 KOG4252|consensus 99.9 6.4E-24 1.4E-28 207.3 5.4 171 3-255 16-186 (246)
122 cd04157 Arl6 Arl6 subfamily. 99.9 2.6E-22 5.6E-27 190.4 15.7 116 9-156 1-117 (162)
123 cd04156 ARLTS1 ARLTS1 subfamil 99.9 7.7E-22 1.7E-26 187.5 14.1 158 9-247 1-159 (160)
124 cd00879 Sar1 Sar1 subfamily. 99.9 1.9E-21 4E-26 191.1 16.6 117 5-156 17-133 (190)
125 cd04161 Arl2l1_Arl13_like Arl2 99.9 6E-22 1.3E-26 192.3 11.4 114 9-157 1-114 (167)
126 cd01896 DRG The developmentall 99.9 7E-21 1.5E-25 196.4 18.4 209 9-274 2-233 (233)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.7E-21 1.2E-25 182.7 15.9 153 9-247 1-166 (167)
128 cd04151 Arl1 Arl1 subfamily. 99.9 1.4E-21 3E-26 186.5 11.5 152 9-247 1-157 (158)
129 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 8.5E-21 1.8E-25 185.2 16.2 154 7-247 15-173 (174)
130 cd00878 Arf_Arl Arf (ADP-ribos 99.9 5.5E-21 1.2E-25 181.5 13.2 152 9-247 1-157 (158)
131 smart00178 SAR Sar1p-like memb 99.8 4.4E-20 9.6E-25 182.4 16.6 117 5-156 15-131 (184)
132 PTZ00099 rab6; Provisional 99.8 6.7E-20 1.5E-24 181.3 17.8 141 30-251 3-143 (176)
133 cd01890 LepA LepA subfamily. 99.8 6.5E-20 1.4E-24 177.7 16.4 154 9-249 2-176 (179)
134 cd04159 Arl10_like Arl10-like 99.8 2E-20 4.3E-25 174.5 12.1 152 10-247 2-158 (159)
135 PLN00023 GTP-binding protein; 99.8 8E-20 1.7E-24 196.3 16.5 133 5-156 19-164 (334)
136 cd01897 NOG NOG1 is a nucleola 99.8 1.5E-19 3.3E-24 173.1 16.5 155 9-249 2-167 (168)
137 PF00025 Arf: ADP-ribosylation 99.8 1.9E-19 4.1E-24 177.3 16.5 160 3-249 10-175 (175)
138 TIGR02528 EutP ethanolamine ut 99.8 1.1E-19 2.5E-24 170.1 13.8 134 9-246 2-141 (142)
139 cd04155 Arl3 Arl3 subfamily. 99.8 2.5E-19 5.5E-24 172.6 15.9 117 5-156 12-128 (173)
140 cd01898 Obg Obg subfamily. Th 99.8 3.4E-19 7.3E-24 170.7 15.6 159 9-248 2-169 (170)
141 KOG0073|consensus 99.8 5.1E-19 1.1E-23 171.3 16.4 168 2-251 11-179 (185)
142 TIGR00231 small_GTP small GTP- 99.8 1.4E-18 3E-23 160.2 18.4 157 7-245 1-159 (161)
143 COG1100 GTPase SAR1 and relate 99.8 2.1E-18 4.4E-23 173.0 20.4 180 7-255 5-190 (219)
144 cd04171 SelB SelB subfamily. 99.8 6.8E-19 1.5E-23 166.7 15.4 82 9-91 2-86 (164)
145 PRK12299 obgE GTPase CgtA; Rev 99.8 5.1E-18 1.1E-22 184.2 18.1 165 7-251 158-329 (335)
146 cd01879 FeoB Ferrous iron tran 99.8 6.5E-18 1.4E-22 159.4 15.1 148 12-249 1-156 (158)
147 cd01878 HflX HflX subfamily. 99.8 6.3E-18 1.4E-22 168.6 15.8 156 5-248 39-203 (204)
148 PRK04213 GTP-binding protein; 99.8 5.3E-18 1.1E-22 168.6 12.5 81 5-91 7-102 (201)
149 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 6.5E-17 1.4E-21 154.4 17.4 85 9-93 2-87 (168)
150 cd01891 TypA_BipA TypA (tyrosi 99.7 2E-17 4.3E-22 164.4 13.5 84 9-92 4-101 (194)
151 TIGR00450 mnmE_trmE_thdF tRNA 99.7 5.7E-17 1.2E-21 181.9 18.2 151 6-251 202-361 (442)
152 PF08477 Miro: Miro-like prote 99.7 2.1E-17 4.5E-22 150.3 11.4 117 9-154 1-119 (119)
153 cd01881 Obg_like The Obg-like 99.7 2.7E-17 5.9E-22 157.8 12.5 161 12-248 1-175 (176)
154 cd00882 Ras_like_GTPase Ras-li 99.7 1.4E-16 3E-21 144.4 15.9 154 12-246 1-156 (157)
155 PRK03003 GTP-binding protein D 99.7 1E-16 2.2E-21 181.2 18.1 154 7-251 38-200 (472)
156 TIGR02729 Obg_CgtA Obg family 99.7 1E-16 2.3E-21 173.6 17.2 162 7-249 157-328 (329)
157 TIGR03156 GTP_HflX GTP-binding 99.7 1.9E-16 4.2E-21 172.9 17.4 154 6-248 188-350 (351)
158 PF02421 FeoB_N: Ferrous iron 99.7 6.2E-17 1.3E-21 158.1 10.7 148 8-245 1-156 (156)
159 cd01894 EngA1 EngA1 subfamily. 99.7 4E-16 8.7E-21 146.4 15.7 146 11-248 1-156 (157)
160 TIGR00436 era GTP-binding prot 99.7 3.2E-16 6.8E-21 164.8 16.4 152 9-249 2-163 (270)
161 KOG0070|consensus 99.7 1.5E-16 3.2E-21 157.2 12.0 163 6-250 16-178 (181)
162 PRK15467 ethanolamine utilizat 99.7 3.3E-16 7.1E-21 152.0 14.2 138 9-249 3-146 (158)
163 cd00881 GTP_translation_factor 99.7 5.1E-16 1.1E-20 150.4 15.5 170 9-249 1-186 (189)
164 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.2E-15 2.7E-20 142.8 16.6 146 8-249 2-156 (157)
165 PRK15494 era GTPase Era; Provi 99.7 1.1E-15 2.5E-20 166.1 18.6 154 5-249 50-215 (339)
166 KOG1486|consensus 99.7 7.9E-16 1.7E-20 158.0 16.2 245 8-309 63-331 (364)
167 TIGR01393 lepA GTP-binding pro 99.7 5.9E-16 1.3E-20 179.5 17.4 155 8-249 4-179 (595)
168 PRK00454 engB GTP-binding prot 99.7 1.2E-15 2.5E-20 150.3 16.6 159 5-249 22-193 (196)
169 cd01889 SelB_euk SelB subfamil 99.7 6.1E-16 1.3E-20 153.5 14.1 159 8-249 1-185 (192)
170 KOG1673|consensus 99.7 4.1E-16 8.9E-21 150.0 11.7 169 5-250 18-186 (205)
171 cd01895 EngA2 EngA2 subfamily. 99.7 1.8E-15 4E-20 143.4 16.0 155 7-248 2-173 (174)
172 KOG0096|consensus 99.7 2.6E-16 5.6E-21 155.8 10.1 160 6-249 9-168 (216)
173 PRK12297 obgE GTPase CgtA; Rev 99.7 2.8E-15 6E-20 167.3 19.2 159 8-250 159-327 (424)
174 PRK05291 trmE tRNA modificatio 99.7 1.2E-15 2.6E-20 171.6 16.2 147 7-250 215-370 (449)
175 TIGR03598 GTPase_YsxC ribosome 99.7 1.5E-15 3.3E-20 149.1 14.7 91 5-98 16-119 (179)
176 PRK11058 GTPase HflX; Provisio 99.6 1.8E-15 3.9E-20 169.2 16.5 155 8-249 198-361 (426)
177 cd04105 SR_beta Signal recogni 99.6 2.3E-15 4.9E-20 152.1 15.6 120 9-157 2-123 (203)
178 PRK12296 obgE GTPase CgtA; Rev 99.6 4.1E-15 8.9E-20 168.4 17.9 174 6-253 158-343 (500)
179 PRK00093 GTP-binding protein D 99.6 3.4E-15 7.4E-20 166.4 16.9 87 8-96 2-97 (435)
180 TIGR00437 feoB ferrous iron tr 99.6 3.6E-15 7.9E-20 172.9 16.6 146 14-249 1-154 (591)
181 TIGR03594 GTPase_EngA ribosome 99.6 7.1E-15 1.5E-19 163.3 16.8 149 9-249 1-159 (429)
182 KOG4423|consensus 99.6 2.4E-17 5.2E-22 162.5 -2.7 175 3-253 21-197 (229)
183 KOG3883|consensus 99.6 9.3E-15 2E-19 140.5 14.4 163 7-250 9-175 (198)
184 cd04163 Era Era subfamily. Er 99.6 1.6E-14 3.4E-19 135.4 15.6 154 7-248 3-167 (168)
185 TIGR00487 IF-2 translation ini 99.6 1.3E-14 2.9E-19 167.9 18.4 87 6-93 86-172 (587)
186 KOG0075|consensus 99.6 1.6E-15 3.5E-20 144.8 7.8 163 6-249 19-181 (186)
187 PRK12298 obgE GTPase CgtA; Rev 99.6 2.1E-14 4.6E-19 158.9 17.2 161 8-249 160-332 (390)
188 TIGR00475 selB selenocysteine- 99.6 1.5E-14 3.2E-19 167.6 16.5 155 8-250 1-166 (581)
189 PRK09518 bifunctional cytidyla 99.6 3.1E-14 6.8E-19 168.5 18.5 154 6-250 274-436 (712)
190 PRK05433 GTP-binding protein L 99.6 3.8E-14 8.3E-19 164.7 17.4 162 1-249 1-183 (600)
191 cd00880 Era_like Era (E. coli 99.6 3.1E-14 6.8E-19 131.1 13.4 154 12-248 1-162 (163)
192 KOG0071|consensus 99.6 3E-14 6.5E-19 135.3 13.1 156 7-249 17-177 (180)
193 PRK00089 era GTPase Era; Revie 99.6 5.3E-14 1.1E-18 149.0 16.2 156 7-249 5-170 (292)
194 cd01888 eIF2_gamma eIF2-gamma 99.6 1.1E-13 2.3E-18 139.6 17.1 157 8-249 1-198 (203)
195 PRK05306 infB translation init 99.6 3.7E-14 8.1E-19 168.2 16.0 86 6-93 289-374 (787)
196 cd01876 YihA_EngB The YihA (En 99.6 6.1E-14 1.3E-18 131.9 14.0 152 9-248 1-169 (170)
197 PRK09554 feoB ferrous iron tra 99.5 9.1E-14 2E-18 165.3 18.1 153 7-249 3-167 (772)
198 CHL00189 infB translation init 99.5 8.5E-14 1.8E-18 164.1 17.6 89 6-94 243-333 (742)
199 KOG0076|consensus 99.5 4.2E-14 9.1E-19 138.6 8.6 164 5-251 15-188 (197)
200 TIGR00491 aIF-2 translation in 99.5 2.5E-13 5.3E-18 157.4 15.1 84 9-92 6-105 (590)
201 COG1160 Predicted GTPases [Gen 99.5 2.7E-13 6E-18 149.9 14.0 148 8-249 4-164 (444)
202 PRK09602 translation-associate 99.5 4.6E-13 9.9E-18 148.7 15.6 83 8-90 2-113 (396)
203 PRK12317 elongation factor 1-a 99.5 2.9E-13 6.3E-18 151.1 14.1 86 5-92 4-120 (425)
204 KOG1707|consensus 99.5 3.3E-14 7.1E-19 159.8 6.1 190 7-274 9-203 (625)
205 TIGR00483 EF-1_alpha translati 99.5 8.7E-13 1.9E-17 147.5 16.7 93 1-95 1-124 (426)
206 COG0486 ThdF Predicted GTPase 99.5 1.1E-12 2.4E-17 145.5 16.3 151 7-250 217-376 (454)
207 KOG0074|consensus 99.4 4.8E-13 1E-17 127.4 10.7 119 4-156 14-132 (185)
208 cd04168 TetM_like Tet(M)-like 99.4 1.8E-12 3.9E-17 134.5 15.2 96 9-105 1-112 (237)
209 PF00009 GTP_EFTU: Elongation 99.4 8.5E-13 1.8E-17 131.0 12.2 161 6-249 2-186 (188)
210 cd04166 CysN_ATPS CysN_ATPS su 99.4 6.3E-13 1.4E-17 134.5 11.3 83 9-93 1-114 (208)
211 PF09735 Nckap1: Membrane-asso 99.4 1.9E-14 4.1E-19 175.0 -0.3 88 254-341 7-96 (1116)
212 cd04167 Snu114p Snu114p subfam 99.4 3.2E-12 6.8E-17 129.6 15.9 113 9-156 2-136 (213)
213 KOG1191|consensus 99.4 1E-12 2.3E-17 145.7 13.1 228 6-347 267-506 (531)
214 COG1159 Era GTPase [General fu 99.4 4.2E-12 9E-17 134.3 16.4 157 6-249 5-171 (298)
215 KOG0072|consensus 99.4 4.7E-13 1E-17 127.8 7.5 96 4-104 15-110 (182)
216 PRK10218 GTP-binding protein; 99.4 4.4E-12 9.6E-17 147.5 17.1 89 7-95 5-107 (607)
217 COG0370 FeoB Fe2+ transport sy 99.4 2.3E-12 4.9E-17 148.2 14.4 152 8-249 4-163 (653)
218 cd01899 Ygr210 Ygr210 subfamil 99.4 3E-12 6.4E-17 138.5 14.0 82 10-91 1-111 (318)
219 TIGR03680 eif2g_arch translati 99.4 3.8E-12 8.2E-17 141.7 15.1 163 5-249 2-195 (406)
220 TIGR01394 TypA_BipA GTP-bindin 99.4 3.4E-12 7.4E-17 148.3 14.2 113 9-156 3-129 (594)
221 PRK04004 translation initiatio 99.4 1.3E-11 2.7E-16 143.5 18.6 92 7-98 6-116 (586)
222 PRK04000 translation initiatio 99.4 6.3E-12 1.4E-16 140.3 15.1 91 2-93 4-122 (411)
223 PRK10512 selenocysteinyl-tRNA- 99.4 1.3E-11 2.8E-16 144.1 18.0 156 9-249 2-165 (614)
224 cd04169 RF3 RF3 subfamily. Pe 99.4 1E-11 2.2E-16 131.2 14.8 112 9-124 4-135 (267)
225 PF10662 PduV-EutP: Ethanolami 99.3 1.4E-11 3E-16 118.9 13.8 135 9-246 3-142 (143)
226 KOG1423|consensus 99.3 2.2E-11 4.7E-16 128.8 15.7 120 4-158 69-200 (379)
227 PTZ00258 GTP-binding protein; 99.3 1.4E-11 3E-16 136.4 14.6 248 6-310 20-343 (390)
228 cd01884 EF_Tu EF-Tu subfamily. 99.3 4.3E-11 9.3E-16 120.8 16.0 87 7-93 2-102 (195)
229 cd01883 EF1_alpha Eukaryotic e 99.3 2.8E-11 6E-16 123.6 13.6 82 9-92 1-113 (219)
230 cd04165 GTPBP1_like GTPBP1-lik 99.3 1.2E-10 2.5E-15 120.1 17.3 178 9-246 1-219 (224)
231 KOG1489|consensus 99.3 3.6E-11 7.8E-16 127.8 13.3 156 9-247 198-364 (366)
232 COG2229 Predicted GTPase [Gene 99.3 1.5E-10 3.3E-15 114.9 16.7 157 5-248 8-176 (187)
233 PRK12735 elongation factor Tu; 99.3 7.5E-11 1.6E-15 131.0 16.0 92 2-93 7-112 (396)
234 cd04170 EF-G_bact Elongation f 99.3 5.9E-11 1.3E-15 124.6 13.8 88 9-98 1-106 (268)
235 cd01850 CDC_Septin CDC/Septin. 99.2 9E-11 2E-15 124.6 14.6 61 6-66 3-73 (276)
236 PRK00741 prfC peptide chain re 99.2 9.7E-11 2.1E-15 134.6 15.8 88 6-93 9-116 (526)
237 cd04104 p47_IIGP_like p47 (47- 99.2 2.7E-10 5.8E-15 114.4 17.0 173 8-255 2-189 (197)
238 PRK12736 elongation factor Tu; 99.2 2.9E-10 6.4E-15 126.2 18.4 89 4-92 9-111 (394)
239 TIGR00485 EF-Tu translation el 99.2 1.4E-10 3.1E-15 128.6 15.6 91 3-93 8-112 (394)
240 COG0218 Predicted GTPase [Gene 99.2 3.6E-10 7.8E-15 114.1 16.6 157 6-249 23-196 (200)
241 KOG1487|consensus 99.2 3.5E-11 7.7E-16 124.7 8.8 244 8-308 60-324 (358)
242 TIGR00503 prfC peptide chain r 99.2 3.3E-10 7.3E-15 130.2 17.8 88 5-92 9-116 (527)
243 CHL00071 tufA elongation facto 99.2 5.5E-10 1.2E-14 124.6 18.7 92 2-93 7-112 (409)
244 PLN00043 elongation factor 1-a 99.2 2.9E-10 6.2E-15 128.4 15.4 97 1-98 1-126 (447)
245 cd01886 EF-G Elongation factor 99.2 1.2E-09 2.6E-14 115.7 18.4 83 9-93 1-101 (270)
246 PRK13351 elongation factor G; 99.1 1.6E-10 3.4E-15 136.8 11.9 111 6-124 7-137 (687)
247 COG1084 Predicted GTPase [Gene 99.1 6.8E-10 1.5E-14 118.9 15.5 158 7-251 168-337 (346)
248 PRK05124 cysN sulfate adenylyl 99.1 4.1E-10 8.8E-15 128.0 13.0 88 4-93 24-144 (474)
249 KOG0090|consensus 99.1 2.4E-10 5.2E-15 115.8 9.5 190 9-248 40-237 (238)
250 cd01885 EF2 EF2 (for archaea a 99.1 3.1E-10 6.7E-15 117.1 10.5 89 9-97 2-114 (222)
251 PLN03126 Elongation factor Tu; 99.1 1.8E-09 3.9E-14 122.8 17.3 91 3-93 77-181 (478)
252 KOG1490|consensus 99.1 4.5E-10 9.7E-15 125.0 11.4 205 8-293 169-384 (620)
253 TIGR02034 CysN sulfate adenyly 99.1 7.8E-10 1.7E-14 123.4 13.0 84 8-93 1-117 (406)
254 PRK00049 elongation factor Tu; 99.1 5.5E-09 1.2E-13 116.3 19.1 91 3-93 8-112 (396)
255 smart00010 small_GTPase Small 99.1 6E-10 1.3E-14 101.1 9.4 70 8-106 1-71 (124)
256 PF01926 MMR_HSR1: 50S ribosom 99.1 2.1E-09 4.5E-14 98.2 13.0 81 9-91 1-91 (116)
257 PF09439 SRPRB: Signal recogni 99.1 1.5E-10 3.3E-15 115.9 5.3 117 9-157 5-126 (181)
258 TIGR00484 EF-G translation elo 99.0 4.5E-09 9.8E-14 124.6 18.2 90 7-98 10-117 (689)
259 PRK09601 GTP-binding protein Y 99.0 4E-09 8.7E-14 115.9 16.1 83 8-90 3-107 (364)
260 COG2262 HflX GTPases [General 99.0 3.2E-09 7E-14 116.6 15.0 158 7-251 192-357 (411)
261 KOG0077|consensus 99.0 6.6E-10 1.4E-14 108.7 8.5 115 7-156 20-134 (193)
262 PRK05506 bifunctional sulfate 99.0 1.8E-09 3.8E-14 126.8 13.8 87 5-93 22-141 (632)
263 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 6.3E-09 1.4E-13 108.1 14.9 165 9-249 1-175 (232)
264 COG0536 Obg Predicted GTPase [ 99.0 1.8E-09 3.8E-14 116.3 10.9 165 9-253 161-336 (369)
265 COG0532 InfB Translation initi 99.0 3.8E-09 8.3E-14 119.1 13.9 156 10-249 8-169 (509)
266 PLN03127 Elongation factor Tu; 99.0 1.9E-08 4.1E-13 113.8 18.9 87 5-93 59-161 (447)
267 KOG3905|consensus 99.0 1.2E-08 2.6E-13 108.8 16.1 207 9-249 54-289 (473)
268 PTZ00141 elongation factor 1- 99.0 1.4E-08 3.1E-13 114.7 17.7 92 1-92 1-121 (446)
269 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 1.2E-08 2.5E-13 102.2 14.4 82 8-91 1-95 (196)
270 PRK12739 elongation factor G; 98.9 2.3E-08 5E-13 118.6 18.5 89 6-96 7-113 (691)
271 KOG0462|consensus 98.9 5.9E-09 1.3E-13 117.3 12.0 156 6-249 59-234 (650)
272 PRK12740 elongation factor G; 98.9 1.2E-08 2.6E-13 120.5 14.6 85 13-99 1-103 (668)
273 PRK00007 elongation factor G; 98.9 3.6E-08 7.7E-13 117.1 18.3 90 6-97 9-116 (693)
274 TIGR00490 aEF-2 translation el 98.9 6.1E-09 1.3E-13 124.1 11.3 96 1-96 13-126 (720)
275 TIGR00157 ribosome small subun 98.9 5E-09 1.1E-13 109.5 8.2 96 67-247 24-120 (245)
276 COG0481 LepA Membrane GTPase L 98.8 2.8E-08 6.1E-13 110.4 13.2 156 7-249 9-185 (603)
277 PTZ00327 eukaryotic translatio 98.8 6.9E-08 1.5E-12 109.5 15.8 88 5-92 32-153 (460)
278 PF05783 DLIC: Dynein light in 98.8 8E-08 1.7E-12 109.1 16.3 215 8-249 26-263 (472)
279 cd00066 G-alpha G protein alph 98.8 1.1E-07 2.4E-12 103.0 16.5 134 55-252 160-313 (317)
280 PRK14845 translation initiatio 98.8 4.3E-08 9.3E-13 119.8 13.6 75 18-92 472-562 (1049)
281 cd01900 YchF YchF subfamily. 98.8 8.3E-08 1.8E-12 102.2 14.0 81 10-90 1-103 (274)
282 KOG1145|consensus 98.8 6.2E-08 1.3E-12 109.2 13.5 107 10-156 156-266 (683)
283 smart00275 G_alpha G protein a 98.7 4.5E-07 9.7E-12 99.4 16.7 133 56-253 184-337 (342)
284 PRK09866 hypothetical protein; 98.7 4.3E-07 9.2E-12 105.3 16.8 28 8-35 70-97 (741)
285 COG3596 Predicted GTPase [Gene 98.7 8.9E-08 1.9E-12 100.9 9.9 174 7-250 39-222 (296)
286 KOG1707|consensus 98.7 2.2E-07 4.9E-12 105.6 13.4 158 6-249 424-582 (625)
287 TIGR00991 3a0901s02IAP34 GTP-b 98.6 3.7E-07 7.9E-12 98.6 14.1 85 5-91 36-130 (313)
288 COG4917 EutP Ethanolamine util 98.6 2E-07 4.4E-12 87.9 10.4 136 9-247 3-143 (148)
289 cd01853 Toc34_like Toc34-like 98.6 6.1E-07 1.3E-11 94.3 14.0 87 3-91 27-126 (249)
290 KOG1917|consensus 98.6 1.7E-08 3.6E-13 117.8 2.0 87 255-341 14-104 (1125)
291 COG0012 Predicted GTPase, prob 98.6 6.5E-07 1.4E-11 98.0 14.1 84 8-91 3-109 (372)
292 PF14714 KH_dom-like: KH-domai 98.6 8.4E-09 1.8E-13 90.4 -0.9 65 281-346 16-80 (80)
293 KOG0705|consensus 98.5 2.6E-07 5.7E-12 104.0 9.1 164 6-254 29-193 (749)
294 PRK13768 GTPase; Provisional 98.5 5.8E-07 1.3E-11 94.4 10.2 25 225-249 222-246 (253)
295 PLN00116 translation elongatio 98.5 5.7E-07 1.2E-11 109.1 11.3 121 1-156 13-163 (843)
296 TIGR00101 ureG urease accessor 98.5 1E-06 2.2E-11 89.5 11.1 27 223-249 169-195 (199)
297 COG5256 TEF1 Translation elong 98.5 9.3E-07 2E-11 97.6 11.6 93 1-93 1-122 (428)
298 PTZ00416 elongation factor 2; 98.4 8.9E-07 1.9E-11 107.3 11.4 95 3-97 15-133 (836)
299 cd01882 BMS1 Bms1. Bms1 is an 98.4 3.3E-06 7.2E-11 87.1 13.6 81 7-95 39-119 (225)
300 KOG1144|consensus 98.4 1.7E-06 3.7E-11 100.3 11.1 183 10-256 478-693 (1064)
301 TIGR00073 hypB hydrogenase acc 98.4 2.5E-06 5.4E-11 86.6 11.2 55 194-248 148-205 (207)
302 PRK07560 elongation factor EF- 98.3 2E-06 4.4E-11 102.9 11.2 96 1-96 14-127 (731)
303 TIGR00993 3a0901s04IAP86 chlor 98.2 2.3E-05 5E-10 91.5 16.6 103 4-109 115-231 (763)
304 PRK09435 membrane ATPase/prote 98.2 9.5E-06 2E-10 88.8 11.6 26 224-249 234-259 (332)
305 PF04548 AIG1: AIG1 family; I 98.2 1.8E-05 3.9E-10 80.8 12.7 81 8-90 1-94 (212)
306 TIGR02836 spore_IV_A stage IV 98.1 2.9E-05 6.2E-10 86.7 14.1 101 7-107 17-178 (492)
307 KOG0082|consensus 98.1 5.4E-05 1.2E-09 83.1 15.8 146 48-254 189-348 (354)
308 KOG0410|consensus 98.1 7.8E-06 1.7E-10 88.0 8.7 85 10-96 181-274 (410)
309 PF00350 Dynamin_N: Dynamin fa 98.1 1.1E-05 2.4E-10 77.8 9.1 48 58-105 103-154 (168)
310 PF03029 ATP_bind_1: Conserved 98.1 2.5E-06 5.3E-11 89.2 3.7 24 226-249 213-236 (238)
311 TIGR00750 lao LAO/AO transport 98.1 3E-05 6.5E-10 83.4 11.9 25 225-249 213-237 (300)
312 cd01859 MJ1464 MJ1464. This f 98.1 2.8E-05 6E-10 74.8 10.4 29 221-249 67-95 (156)
313 cd01855 YqeH YqeH. YqeH is an 98.0 2E-05 4.4E-10 78.4 9.6 24 226-249 101-124 (190)
314 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 9.5E-06 2.1E-10 77.3 6.4 54 9-66 85-138 (141)
315 KOG0461|consensus 98.0 8.9E-05 1.9E-09 80.4 13.6 95 1-98 1-112 (522)
316 COG1217 TypA Predicted membran 98.0 4.1E-05 9E-10 85.7 11.3 84 8-91 6-103 (603)
317 smart00053 DYNc Dynamin, GTPas 98.0 6.4E-05 1.4E-09 78.9 12.0 25 8-32 27-51 (240)
318 PRK12289 GTPase RsgA; Reviewed 98.0 2.8E-05 6.1E-10 85.8 9.7 91 71-247 81-172 (352)
319 COG2895 CysN GTPases - Sulfate 97.9 4.3E-05 9.4E-10 83.2 10.3 156 4-239 3-192 (431)
320 KOG3886|consensus 97.9 1.1E-05 2.5E-10 83.3 5.4 118 8-158 5-131 (295)
321 PRK00098 GTPase RsgA; Reviewed 97.9 3.1E-05 6.6E-10 83.4 8.8 86 76-246 77-163 (298)
322 cd01854 YjeQ_engC YjeQ/EngC. 97.9 3.8E-05 8.2E-10 82.3 9.4 87 75-247 74-161 (287)
323 cd01858 NGP_1 NGP-1. Autoanti 97.9 2.5E-05 5.4E-10 75.5 7.3 56 7-66 102-157 (157)
324 TIGR00092 GTP-binding protein 97.9 3.1E-05 6.6E-10 85.7 8.8 84 8-91 3-109 (368)
325 KOG0458|consensus 97.9 7.6E-05 1.7E-09 85.5 12.1 86 6-91 176-290 (603)
326 KOG0468|consensus 97.9 3.3E-05 7.1E-10 89.1 8.9 97 1-97 122-238 (971)
327 cd04178 Nucleostemin_like Nucl 97.9 2.8E-05 6.1E-10 77.4 6.9 55 7-66 117-172 (172)
328 cd01859 MJ1464 MJ1464. This f 97.9 3.3E-05 7.1E-10 74.3 7.0 57 6-66 100-156 (156)
329 PF05049 IIGP: Interferon-indu 97.9 1.8E-05 4E-10 87.6 5.9 82 6-88 34-123 (376)
330 cd01856 YlqF YlqF. Proteins o 97.9 3.1E-05 6.8E-10 76.1 7.0 57 6-66 114-170 (171)
331 KOG1532|consensus 97.8 5.8E-05 1.3E-09 79.9 9.1 32 224-255 238-269 (366)
332 COG5257 GCD11 Translation init 97.8 0.00017 3.7E-09 77.8 12.1 163 6-249 9-201 (415)
333 PRK12288 GTPase RsgA; Reviewed 97.8 8.2E-05 1.8E-09 82.0 9.4 88 77-247 118-205 (347)
334 COG4108 PrfC Peptide chain rel 97.7 0.0002 4.4E-09 79.9 11.7 109 9-121 14-142 (528)
335 KOG1491|consensus 97.7 6E-05 1.3E-09 81.7 7.4 85 7-91 20-126 (391)
336 TIGR03597 GTPase_YqeH ribosome 97.7 0.00011 2.3E-09 81.4 9.4 95 66-248 50-151 (360)
337 COG0378 HypB Ni2+-binding GTPa 97.7 0.00024 5.2E-09 72.2 10.7 51 199-249 147-200 (202)
338 PRK09563 rbgA GTPase YlqF; Rev 97.7 8.6E-05 1.9E-09 79.4 8.1 57 6-67 120-177 (287)
339 TIGR03596 GTPase_YlqF ribosome 97.7 7.5E-05 1.6E-09 79.4 7.3 57 6-66 117-173 (276)
340 COG0480 FusA Translation elong 97.7 0.00028 6.2E-09 84.0 12.0 112 5-121 8-137 (697)
341 cd01855 YqeH YqeH. YqeH is an 97.6 9.9E-05 2.2E-09 73.5 6.0 54 8-66 128-190 (190)
342 COG3276 SelB Selenocysteine-sp 97.6 0.00034 7.3E-09 78.3 10.2 82 10-93 3-87 (447)
343 PF00735 Septin: Septin; Inte 97.5 0.00035 7.5E-09 74.9 8.9 60 6-65 3-72 (281)
344 COG1161 Predicted GTPases [Gen 97.5 0.00018 3.9E-09 78.5 6.7 58 6-67 131-188 (322)
345 KOG4273|consensus 97.5 0.00055 1.2E-08 71.6 9.7 96 9-104 6-103 (418)
346 PRK10463 hydrogenase nickel in 97.5 0.0013 2.9E-08 70.8 12.9 55 194-248 230-287 (290)
347 cd01849 YlqF_related_GTPase Yl 97.4 0.00033 7.1E-09 67.7 7.0 56 6-66 99-155 (155)
348 PF03308 ArgK: ArgK protein; 97.3 0.0016 3.5E-08 68.9 11.4 25 225-249 205-229 (266)
349 KOG2486|consensus 97.2 0.00089 1.9E-08 71.3 7.4 58 5-65 134-192 (320)
350 cd01851 GBP Guanylate-binding 97.1 0.0012 2.6E-08 68.4 7.9 85 7-93 7-105 (224)
351 cd01857 HSR1_MMR1 HSR1/MMR1. 97.1 0.0019 4.1E-08 61.5 8.6 23 74-96 6-28 (141)
352 KOG1954|consensus 97.1 0.0054 1.2E-07 67.6 12.3 147 9-158 60-263 (532)
353 COG0050 TufB GTPases - transla 97.1 0.005 1.1E-07 66.2 11.7 88 5-92 10-111 (394)
354 cd01856 YlqF YlqF. Proteins o 97.0 0.0034 7.3E-08 61.7 9.4 26 224-249 75-100 (171)
355 PRK12288 GTPase RsgA; Reviewed 97.0 0.0011 2.5E-08 73.0 6.5 58 10-70 208-271 (347)
356 KOG1143|consensus 97.0 0.0038 8.2E-08 68.7 10.0 181 4-244 164-382 (591)
357 TIGR03597 GTPase_YqeH ribosome 97.0 0.0013 2.9E-08 72.7 6.7 56 8-68 155-216 (360)
358 PRK13796 GTPase YqeH; Provisio 96.9 0.0011 2.4E-08 73.5 5.9 57 8-67 161-221 (365)
359 PRK12289 GTPase RsgA; Reviewed 96.9 0.0011 2.4E-08 73.3 5.8 57 10-69 175-237 (352)
360 cd01849 YlqF_related_GTPase Yl 96.9 0.0042 9E-08 60.0 9.1 29 222-250 57-85 (155)
361 TIGR03348 VI_IcmF type VI secr 96.9 0.0032 7E-08 79.5 9.9 120 10-158 114-258 (1169)
362 COG1703 ArgK Putative periplas 96.8 0.0075 1.6E-07 65.1 10.8 188 8-249 52-253 (323)
363 KOG1547|consensus 96.8 0.032 7E-07 58.7 14.9 61 5-65 44-113 (336)
364 cd01858 NGP_1 NGP-1. Autoanti 96.8 0.0045 9.8E-08 59.8 8.3 24 226-249 71-94 (157)
365 PF03193 DUF258: Protein of un 96.8 0.0012 2.6E-08 65.5 4.1 58 9-69 37-100 (161)
366 PRK13796 GTPase YqeH; Provisio 96.8 0.0065 1.4E-07 67.5 10.1 31 218-248 124-157 (365)
367 TIGR00157 ribosome small subun 96.7 0.0023 4.9E-08 67.3 5.8 57 9-69 122-184 (245)
368 COG5019 CDC3 Septin family pro 96.7 0.0037 8E-08 68.9 7.5 62 5-66 21-92 (373)
369 KOG2655|consensus 96.7 0.0037 8E-08 69.1 7.3 62 5-66 19-89 (366)
370 COG5258 GTPBP1 GTPase [General 96.7 0.029 6.2E-07 62.4 13.7 121 5-160 115-272 (527)
371 KOG1424|consensus 96.5 0.0028 6.1E-08 72.2 4.9 58 6-67 313-370 (562)
372 TIGR03596 GTPase_YlqF ribosome 96.5 0.02 4.3E-07 61.1 11.1 28 223-250 76-103 (276)
373 KOG0448|consensus 96.3 0.032 6.8E-07 65.7 12.3 30 6-35 108-137 (749)
374 PRK09563 rbgA GTPase YlqF; Rev 96.3 0.032 7E-07 59.8 11.4 30 222-251 78-107 (287)
375 cd01854 YjeQ_engC YjeQ/EngC. 96.2 0.008 1.7E-07 64.6 6.4 58 9-69 163-226 (287)
376 PF00503 G-alpha: G-protein al 96.2 0.038 8.3E-07 61.7 11.9 44 46-91 227-271 (389)
377 COG1162 Predicted GTPases [Gen 96.2 0.0063 1.4E-07 65.8 5.3 77 10-108 167-249 (301)
378 PRK00098 GTPase RsgA; Reviewed 96.2 0.0076 1.6E-07 65.1 6.0 57 9-68 166-228 (298)
379 KOG0463|consensus 96.0 0.009 2E-07 65.8 5.6 83 139-243 269-351 (641)
380 TIGR00064 ftsY signal recognit 95.9 0.015 3.2E-07 62.2 6.6 21 8-28 73-93 (272)
381 cd03112 CobW_like The function 95.9 0.023 5.1E-07 55.6 7.2 21 10-30 3-23 (158)
382 COG5192 BMS1 GTP-binding prote 95.8 0.042 9E-07 63.3 9.8 82 7-96 69-150 (1077)
383 COG1618 Predicted nucleotide k 95.8 0.031 6.8E-07 55.7 7.5 56 6-64 4-59 (179)
384 TIGR01425 SRP54_euk signal rec 95.7 0.058 1.2E-06 61.4 10.4 21 8-28 101-121 (429)
385 KOG2484|consensus 95.7 0.008 1.7E-07 66.9 3.4 58 5-66 250-307 (435)
386 KOG3887|consensus 95.4 0.063 1.4E-06 56.6 8.6 219 8-309 28-265 (347)
387 PRK01889 GTPase RsgA; Reviewed 95.4 0.044 9.6E-07 60.8 8.0 25 222-246 169-193 (356)
388 KOG0467|consensus 95.3 0.044 9.6E-07 65.1 8.0 90 5-94 7-110 (887)
389 KOG0464|consensus 95.1 0.02 4.3E-07 63.8 4.1 96 9-104 39-150 (753)
390 cd03222 ABC_RNaseL_inhibitor T 95.1 0.2 4.4E-06 50.3 10.9 66 9-85 27-95 (177)
391 PRK14974 cell division protein 94.8 0.083 1.8E-06 58.3 7.8 43 197-244 282-324 (336)
392 PRK13695 putative NTPase; Prov 94.7 0.34 7.4E-06 47.6 11.3 22 8-29 1-22 (174)
393 KOG2485|consensus 94.5 0.055 1.2E-06 58.8 5.4 59 6-66 142-206 (335)
394 KOG3859|consensus 94.5 0.068 1.5E-06 57.3 5.9 62 4-65 39-104 (406)
395 PRK12727 flagellar biosynthesi 94.3 0.55 1.2E-05 54.9 13.4 21 9-29 352-372 (559)
396 KOG0466|consensus 94.3 0.19 4.1E-06 54.6 8.9 111 214-329 202-319 (466)
397 KOG0460|consensus 94.2 0.19 4E-06 55.5 8.6 88 5-92 52-153 (449)
398 PF03266 NTPase_1: NTPase; In 94.1 0.064 1.4E-06 53.4 4.6 52 9-63 1-52 (168)
399 PF13207 AAA_17: AAA domain; P 94.0 0.046 9.9E-07 49.9 3.1 22 9-30 1-22 (121)
400 PRK10416 signal recognition pa 93.8 0.99 2.1E-05 49.6 13.6 45 195-244 260-304 (318)
401 KOG0447|consensus 93.8 0.4 8.8E-06 55.5 10.5 27 4-30 305-331 (980)
402 COG3523 IcmF Type VI protein s 93.7 0.12 2.6E-06 65.1 6.9 44 453-497 541-584 (1188)
403 cd02042 ParA ParA and ParB of 93.7 0.21 4.5E-06 44.7 6.7 83 10-104 2-85 (104)
404 PF13671 AAA_33: AAA domain; P 93.3 0.065 1.4E-06 50.2 3.0 20 10-29 2-21 (143)
405 KOG0085|consensus 93.3 0.26 5.7E-06 51.7 7.5 22 6-27 38-59 (359)
406 PF13173 AAA_14: AAA domain 93.2 0.16 3.4E-06 47.6 5.5 23 10-32 5-27 (128)
407 COG3845 ABC-type uncharacteriz 93.2 0.65 1.4E-05 53.4 11.0 63 70-136 149-212 (501)
408 PRK08118 topology modulation p 93.1 0.071 1.5E-06 52.8 3.1 22 9-30 3-24 (167)
409 cd00009 AAA The AAA+ (ATPases 93.1 0.39 8.4E-06 43.5 7.7 24 8-31 20-43 (151)
410 PF13521 AAA_28: AAA domain; P 93.0 0.055 1.2E-06 52.5 2.1 22 9-30 1-22 (163)
411 KOG0465|consensus 92.9 0.26 5.7E-06 57.7 7.6 109 9-121 41-165 (721)
412 PRK07261 topology modulation p 92.9 0.081 1.8E-06 52.4 3.1 21 9-29 2-22 (171)
413 COG0563 Adk Adenylate kinase a 92.8 0.074 1.6E-06 53.5 2.8 22 9-30 2-23 (178)
414 TIGR00959 ffh signal recogniti 92.8 0.26 5.7E-06 56.1 7.5 21 8-28 100-120 (428)
415 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.8 0.41 8.9E-06 46.0 7.7 65 9-85 28-94 (144)
416 PF00005 ABC_tran: ABC transpo 92.5 0.1 2.2E-06 48.7 3.0 22 9-30 13-34 (137)
417 cd03111 CpaE_like This protein 92.5 0.37 8E-06 44.0 6.6 91 10-109 2-93 (106)
418 PRK14738 gmk guanylate kinase; 92.5 0.12 2.6E-06 52.7 3.8 27 4-30 10-36 (206)
419 smart00382 AAA ATPases associa 92.4 0.12 2.6E-06 46.1 3.3 25 9-33 4-28 (148)
420 PRK14737 gmk guanylate kinase; 92.0 0.12 2.6E-06 52.1 3.1 21 10-30 7-27 (186)
421 cd01983 Fer4_NifH The Fer4_Nif 91.9 0.88 1.9E-05 38.7 8.0 76 10-100 2-78 (99)
422 COG0523 Putative GTPases (G3E 91.7 2.9 6.4E-05 46.1 13.6 22 10-31 4-25 (323)
423 PF00004 AAA: ATPase family as 91.7 0.14 3E-06 46.8 2.9 21 10-30 1-21 (132)
424 KOG0099|consensus 91.7 1.5 3.2E-05 47.1 10.7 44 46-91 194-237 (379)
425 PRK01889 GTPase RsgA; Reviewed 91.6 0.17 3.6E-06 56.3 3.9 23 9-31 197-219 (356)
426 COG1116 TauB ABC-type nitrate/ 91.6 0.14 3E-06 54.2 3.0 22 10-31 32-53 (248)
427 PRK14722 flhF flagellar biosyn 91.4 1 2.3E-05 50.5 9.8 21 9-29 139-159 (374)
428 cd00267 ABC_ATPase ABC (ATP-bi 91.4 2.2 4.8E-05 41.1 11.0 23 9-31 27-49 (157)
429 TIGR02322 phosphon_PhnN phosph 91.2 0.16 3.5E-06 49.9 3.0 22 9-30 3-24 (179)
430 PF13238 AAA_18: AAA domain; P 91.2 0.17 3.6E-06 46.0 2.9 21 10-30 1-21 (129)
431 TIGR00150 HI0065_YjeE ATPase, 91.1 0.63 1.4E-05 45.0 6.8 22 9-30 24-45 (133)
432 PF13555 AAA_29: P-loop contai 91.1 0.21 4.5E-06 42.2 3.0 20 10-29 26-45 (62)
433 cd03260 ABC_PstB_phosphate_tra 91.0 0.37 8E-06 49.3 5.4 23 9-31 28-50 (227)
434 TIGR03263 guanyl_kin guanylate 91.0 0.18 4E-06 49.4 3.1 22 9-30 3-24 (180)
435 PRK10078 ribose 1,5-bisphospho 90.9 0.18 4E-06 50.3 3.1 22 9-30 4-25 (186)
436 cd02019 NK Nucleoside/nucleoti 90.9 0.21 4.5E-06 42.2 2.9 21 10-30 2-22 (69)
437 COG0194 Gmk Guanylate kinase [ 90.8 0.13 2.8E-06 52.4 1.9 23 9-31 6-28 (191)
438 PRK06217 hypothetical protein; 90.8 0.2 4.3E-06 49.9 3.1 23 8-30 2-24 (183)
439 COG1126 GlnQ ABC-type polar am 90.7 0.24 5.2E-06 51.7 3.7 23 9-31 30-52 (240)
440 COG1120 FepC ABC-type cobalami 90.7 0.19 4.1E-06 53.7 3.0 21 10-30 31-51 (258)
441 cd00071 GMPK Guanosine monopho 90.7 0.21 4.5E-06 47.8 3.0 21 10-30 2-22 (137)
442 TIGR01360 aden_kin_iso1 adenyl 90.5 0.21 4.5E-06 49.0 3.0 21 9-29 5-25 (188)
443 PF05621 TniB: Bacterial TniB 90.5 2 4.3E-05 47.0 10.6 24 8-31 62-85 (302)
444 COG1162 Predicted GTPases [Gen 90.5 1 2.2E-05 49.2 8.4 35 214-248 131-165 (301)
445 KOG0780|consensus 90.4 0.47 1E-05 53.2 5.8 88 10-97 104-231 (483)
446 COG4615 PvdE ABC-type sideroph 90.3 0.4 8.6E-06 54.0 5.2 84 10-109 352-435 (546)
447 KOG0066|consensus 90.3 1.6 3.5E-05 49.8 9.9 25 6-30 612-636 (807)
448 PRK03839 putative kinase; Prov 90.3 0.23 5E-06 49.0 3.1 22 9-30 2-23 (180)
449 PRK05541 adenylylsulfate kinas 90.3 0.27 5.9E-06 48.3 3.6 29 1-29 1-29 (176)
450 PRK14530 adenylate kinase; Pro 90.3 0.24 5.1E-06 50.6 3.3 21 9-29 5-25 (215)
451 PF13191 AAA_16: AAA ATPase do 90.1 0.22 4.7E-06 48.4 2.8 21 9-29 26-46 (185)
452 COG1136 SalX ABC-type antimicr 90.1 0.28 6.2E-06 51.4 3.7 22 10-31 34-55 (226)
453 PF05729 NACHT: NACHT domain 90.0 0.24 5.2E-06 46.8 2.9 20 10-29 3-22 (166)
454 PF07728 AAA_5: AAA domain (dy 89.9 0.27 6E-06 46.1 3.2 21 9-29 1-21 (139)
455 PF06858 NOG1: Nucleolar GTP-b 89.8 0.78 1.7E-05 38.3 5.3 43 80-154 14-58 (58)
456 PF13401 AAA_22: AAA domain; P 89.8 0.26 5.7E-06 45.3 2.9 21 10-30 7-27 (131)
457 PF03205 MobB: Molybdopterin g 89.8 0.25 5.4E-06 47.7 2.9 22 9-30 2-23 (140)
458 PRK14273 phosphate ABC transpo 89.8 0.6 1.3E-05 48.7 5.9 23 9-31 35-57 (254)
459 cd03255 ABC_MJ0796_Lo1CDE_FtsE 89.7 0.28 6.2E-06 49.7 3.3 22 9-30 32-53 (218)
460 PRK14241 phosphate transporter 89.6 0.62 1.3E-05 48.8 5.8 23 9-31 32-54 (258)
461 cd02038 FleN-like FleN is a me 89.6 1.2 2.6E-05 42.5 7.3 90 11-107 4-93 (139)
462 PRK14267 phosphate ABC transpo 89.5 0.57 1.2E-05 48.8 5.5 23 9-31 32-54 (253)
463 PRK14247 phosphate ABC transpo 89.5 0.64 1.4E-05 48.3 5.8 23 9-31 31-53 (250)
464 cd03238 ABC_UvrA The excision 89.5 0.3 6.6E-06 49.0 3.3 20 9-28 23-42 (176)
465 PRK14257 phosphate ABC transpo 89.5 0.59 1.3E-05 51.3 5.8 23 9-31 110-132 (329)
466 TIGR00960 3a0501s02 Type II (G 89.4 0.31 6.6E-06 49.5 3.3 22 9-30 31-52 (216)
467 PRK14532 adenylate kinase; Pro 89.4 0.29 6.3E-06 48.6 3.0 21 9-29 2-22 (188)
468 PRK14237 phosphate transporter 89.3 0.61 1.3E-05 49.3 5.6 23 9-31 48-70 (267)
469 PRK00300 gmk guanylate kinase; 89.3 0.29 6.2E-06 49.1 3.0 22 9-30 7-28 (205)
470 TIGR01166 cbiO cobalt transpor 89.2 0.3 6.5E-06 48.6 3.0 23 9-31 20-42 (190)
471 PRK14268 phosphate ABC transpo 89.2 0.66 1.4E-05 48.6 5.7 23 9-31 40-62 (258)
472 PRK08233 hypothetical protein; 89.2 0.3 6.6E-06 47.6 3.0 23 8-30 4-26 (182)
473 cd02023 UMPK Uridine monophosp 89.1 0.29 6.4E-06 49.0 2.9 21 10-30 2-22 (198)
474 cd03225 ABC_cobalt_CbiO_domain 89.1 0.31 6.7E-06 49.2 3.1 23 9-31 29-51 (211)
475 PRK13949 shikimate kinase; Pro 89.1 0.32 7E-06 48.2 3.1 21 9-29 3-23 (169)
476 PRK14235 phosphate transporter 89.1 0.65 1.4E-05 49.1 5.6 23 9-31 47-69 (267)
477 TIGR03608 L_ocin_972_ABC putat 89.1 0.34 7.3E-06 48.6 3.3 23 9-31 26-48 (206)
478 KOG0469|consensus 89.1 0.94 2E-05 52.2 7.0 91 5-95 17-137 (842)
479 TIGR00235 udk uridine kinase. 89.1 0.39 8.5E-06 48.7 3.8 23 8-30 7-29 (207)
480 cd03261 ABC_Org_Solvent_Resist 89.1 0.33 7.2E-06 50.0 3.3 22 9-30 28-49 (235)
481 cd03226 ABC_cobalt_CbiO_domain 89.0 0.33 7.3E-06 48.9 3.3 23 9-31 28-50 (205)
482 PRK02496 adk adenylate kinase; 89.0 0.35 7.5E-06 47.9 3.3 22 8-29 2-23 (184)
483 COG3839 MalK ABC-type sugar tr 89.0 0.3 6.5E-06 54.0 3.0 22 10-31 32-53 (338)
484 cd03264 ABC_drug_resistance_li 89.0 0.32 6.9E-06 49.2 3.1 22 9-30 27-48 (211)
485 PRK14274 phosphate ABC transpo 88.9 0.68 1.5E-05 48.5 5.6 23 9-31 40-62 (259)
486 cd01428 ADK Adenylate kinase ( 88.9 0.3 6.5E-06 48.2 2.8 22 9-30 1-22 (194)
487 TIGR02315 ABC_phnC phosphonate 88.9 0.35 7.5E-06 49.9 3.3 22 9-30 30-51 (243)
488 cd03292 ABC_FtsE_transporter F 88.9 0.36 7.7E-06 48.8 3.3 22 9-30 29-50 (214)
489 cd03265 ABC_DrrA DrrA is the A 88.8 0.36 7.7E-06 49.2 3.3 22 9-30 28-49 (220)
490 KOG2423|consensus 88.8 0.17 3.7E-06 56.6 1.0 82 6-94 306-389 (572)
491 cd03269 ABC_putative_ATPase Th 88.8 0.36 7.9E-06 48.7 3.3 23 9-31 28-50 (210)
492 cd03262 ABC_HisP_GlnQ_permease 88.8 0.37 7.9E-06 48.7 3.3 23 9-31 28-50 (213)
493 cd03218 ABC_YhbG The ABC trans 88.7 0.36 7.8E-06 49.4 3.3 23 9-31 28-50 (232)
494 PRK14249 phosphate ABC transpo 88.7 0.77 1.7E-05 47.8 5.8 23 9-31 32-54 (251)
495 TIGR02673 FtsE cell division A 88.7 0.37 7.9E-06 48.8 3.3 22 9-30 30-51 (214)
496 cd03263 ABC_subfamily_A The AB 88.7 0.34 7.4E-06 49.2 3.1 23 9-31 30-52 (220)
497 cd03224 ABC_TM1139_LivF_branch 88.7 0.36 7.7E-06 49.1 3.2 23 9-31 28-50 (222)
498 PRK13541 cytochrome c biogenes 88.7 0.37 8.1E-06 48.3 3.3 23 9-31 28-50 (195)
499 PRK14240 phosphate transporter 88.7 0.73 1.6E-05 47.9 5.6 22 9-30 31-52 (250)
500 PRK14238 phosphate transporter 88.6 0.76 1.6E-05 48.7 5.7 23 9-31 52-74 (271)
No 1
>KOG1917|consensus
Probab=100.00 E-value=3.2e-76 Score=665.63 Aligned_cols=238 Identities=60% Similarity=0.932 Sum_probs=232.0
Q ss_pred HHHHHhhhccCCccccccccCCCCcccccchhhhcchHHHHHHHHHHHHhhcccceeEEEeeeechHHHHHHhHHHHHHH
Q psy17467 386 QIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR 465 (730)
Q Consensus 386 ~~~~kkkk~~k~kK~~~~~~~pg~es~~~~~~~~~~~d~~~~~l~~lc~~~~~~~~i~v~~~~f~p~eyl~~~l~~~f~~ 465 (730)
.+.++|++++|++|+++++.+||+|||||||..+|+|||||++|||||+++|++++|+||||+|+|||||++|||.||.|
T Consensus 636 ~a~~~k~~s~k~~k~~~~r~kpG~ESyrknr~~lt~lDklh~~LteLc~~ln~~~~i~V~eHtf~prEYL~~~Le~rf~r 715 (1125)
T KOG1917|consen 636 NASNKKKKSQKSPKGEPERDKPGHESYRKNRKSLTMLDKLHTALTELCFALNYVPPICVWEHTFAPREYLRQHLEGRFKR 715 (1125)
T ss_pred HHHHhhccCCCCCCCCCcCCCCccccccchhhhhccHHHHHHHHHHHHHHhccCCceeEEeecccHHHHHHHHHHHHHHH
Confidence 56778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCCCcccCcHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHh
Q psy17467 466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLR 545 (730)
Q Consensus 466 ~~~~~~~~~~~~~~~~rps~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~ll~~tq~~d~~~~~~~~~~~~~~~~~~~~~ 545 (730)
.|++|.+||++|++|+||||||++|||||+|+|++||||+||+||+||++||||||++||||++
T Consensus 716 ~~vgm~~~nqtt~ei~kPSeLla~vrayM~vlq~leq~v~~Ditrvir~~LLqQtq~lDs~gEq---------------- 779 (1125)
T KOG1917|consen 716 RLVGMLMYNQTTQEIAKPSELLASVRAYMGVLQSLEQYVSIDITRVIRNILLQQTQSLDSHGEQ---------------- 779 (1125)
T ss_pred HHHHHHHcCCccccccChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccCCCch----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcccchhheeeeccceeccchhhhhhhhhhhhhcccccCccchhhHHHHHHHHHHHhccCCCceEeecccc
Q psy17467 546 RVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQR 625 (730)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~y~~wy~e~l~~~~~~~~~~~s~~~~ 625 (730)
|||++|||||+|+|||+||+|||+|||++|
T Consensus 780 --------------------------------------------------Ti~~lytnWYlE~LLR~vSsg~Iv~sp~~k 809 (1125)
T KOG1917|consen 780 --------------------------------------------------TIAALYTNWYLEVLLRRVSSGHIVFSPAMK 809 (1125)
T ss_pred --------------------------------------------------hHHHHHHHHHHHHHHHHhcCCcEEechHHH
Confidence 888999999999999999999999999999
Q ss_pred cccccCCCCCccccccccCCHHHHHHHHHhHcchhhHHHHHHHHH----HhhchhhhhhcCCCCcccc
Q psy17467 626 AFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLK----AFNAAHEMVHNQSDVNFPR 689 (730)
Q Consensus 626 ~f~s~~~~~~~~~~ae~~~d~~el~al~~l~gpyg~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~ 689 (730)
+|||++++|.++|+||+|||++|||||+||+||||||||+|+||| .-||.-.++..|-|+...-
T Consensus 810 afvs~~~e~~~~f~aee~SDl~ElrAlvel~GpYGvk~Lse~LmwHvasqV~elkklv~tn~d~L~~~ 877 (1125)
T KOG1917|consen 810 AFVSLPPEGELGFNAEEYSDLSELRALVELLGPYGVKFLSEMLMWHVASQVNELKKLVVTNKDVLEQA 877 (1125)
T ss_pred hhccCCccccCCCChhhcCCHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999 8899999999999987643
No 2
>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling. It associates preferentially with the first SH3 domain of Nck and is a component of the WAVE2 complex composed of ABI1, CYFIP1/SRA1, NCKAP1/NAP1 and WASF2/WAVE2. It is also a component of the WAVE1 complex composed of ABI2, CYFIP2, C3orf10/HSPC300, NCKAP1 and WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The complex can also be activated by NCK1. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease [].; PDB: 3P8C_B.
Probab=100.00 E-value=8.7e-68 Score=633.58 Aligned_cols=244 Identities=57% Similarity=0.886 Sum_probs=194.0
Q ss_pred HHHHHhhhccCCccccccccCCCCcccccchhhhcchHHHHHHHHHHHHhhcccceeEEEeeeechHHHHHHhHHHHHHH
Q psy17467 386 QIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR 465 (730)
Q Consensus 386 ~~~~kkkk~~k~kK~~~~~~~pg~es~~~~~~~~~~~d~~~~~l~~lc~~~~~~~~i~v~~~~f~p~eyl~~~l~~~f~~ 465 (730)
+++++|++|+++||+.+++.+||.||+|++|+++|+||++|++|+|||+|||++++|+||||+|+|||||++|||++|++
T Consensus 635 ~~~~~k~~k~~~k~~~~~~~~PG~ES~r~~r~~~t~ld~l~~~L~eLc~aln~~~~I~V~dh~f~PrEyL~~~Le~~f~~ 714 (1116)
T PF09735_consen 635 QARNKKKKKQKNKKGEPERVKPGAESYRKNRENLTMLDKLHQALTELCSALNHFPSIVVFDHVFVPREYLREHLENRFRR 714 (1116)
T ss_dssp HHTT-----------------TTGGG--S-TTS--HHHHHHHHHHHHHHHHTS-S-EEETTEEE-HHHHHHHHHHHHHHH
T ss_pred HHHhhhcccccCcCCCCCCCCCchhccCCCchhhhhHHHHHHHHHHHHHHHhcCCCeEEEeeEeeHHHHHHHHHHHHHHH
Confidence 45556666678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCCCcccCcHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHh
Q psy17467 466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLR 545 (730)
Q Consensus 466 ~~~~~~~~~~~~~~~~rps~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~ll~~tq~~d~~~~~~~~~~~~~~~~~~~~~ 545 (730)
+|++|++||+++++|+||||||++|++||+|||++||||+||+|++||+||||||||.|+||++
T Consensus 715 ~l~~~~~~~~~~~~i~RPS~ll~~l~a~m~vlq~le~~v~iDvt~~~~~vLLqqtq~~d~~g~~---------------- 778 (1116)
T PF09735_consen 715 ALVSMVMYNPDDQEIARPSELLSSLRAYMSVLQSLENYVSIDVTRLFRNVLLQQTQPVDSHGEK---------------- 778 (1116)
T ss_dssp HHHHHT--BTTTTB---HHHHHHHHHHHHHHHHHGGGTSS--HHHHHHHHHHHTTSSB-TTS-B----------------
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCcccCCcc----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcccchhheeeeccceeccchhhhhhhhhhhhhcccccCccchhhHHHHHHHHHHHhccCCCceEeecccc
Q psy17467 546 RVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQR 625 (730)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~y~~wy~e~l~~~~~~~~~~~s~~~~ 625 (730)
|+|++||+||+|+|+|++++|||||||+++
T Consensus 779 --------------------------------------------------ti~~~yt~WYle~llr~~s~~~ivfSp~~~ 808 (1116)
T PF09735_consen 779 --------------------------------------------------TITTLYTNWYLENLLRDASNGGIVFSPSRK 808 (1116)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHTHHHHHHTTSEEEETTTT
T ss_pred --------------------------------------------------cHHHHHHHHHHHHHHHhccCCcEEeecHHH
Confidence 899999999999999999999999999999
Q ss_pred cccccCCCCCccccccccCCHHHHHHHHHhHcchhhHHHHHHHHH----HhhchhhhhhcCCCCccccccceeeccccc
Q psy17467 626 AFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLK----AFNAAHEMVHNQSDVNFPRLGQMIMDYEVP 700 (730)
Q Consensus 626 ~f~s~~~~~~~~~~ae~~~d~~el~al~~l~gpyg~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (730)
||||.+++ +.+|+||+|||++||||||+||||||||+||++|+| ..+|+.+++..|.|++..-. -.|+.|
T Consensus 809 ~FvS~~~~-~~~f~ae~ytD~~ELrAL~~LiGpyGvk~l~~~L~~~va~~v~elkk~v~~N~d~L~~l~----~~~~~~ 882 (1116)
T PF09735_consen 809 CFVSSRPE-QGPFNAEEYTDLNELRALVELIGPYGVKFLDENLMWHVASQVNELKKLVRQNRDVLEQLR----SNFDKP 882 (1116)
T ss_dssp EEEE-SSS----S-THHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH----H-TT-H
T ss_pred hhhCCCCc-cCCcChHHcCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HhcCCH
Confidence 99999987 678999999999999999999999999999999999 88999999999999887433 346666
No 3
>KOG0084|consensus
Probab=100.00 E-value=1.2e-33 Score=279.66 Aligned_cols=173 Identities=50% Similarity=0.864 Sum_probs=159.4
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
..++|++||+++|++|||||+|+.||.++.|...+..|+|+|+..+++.++|+.++|+||||+|+++|+++...|||+|+
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
+||+|||+|+.+||+++..|+.++.++.. ++.|.++||||+|+.
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-------------------------------~~v~~lLVGNK~Dl~----- 127 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYAS-------------------------------ENVPKLLVGNKCDLT----- 127 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhcc-------------------------------CCCCeEEEeeccccH-----
Confidence 99999999999999999999999998763 456667777777775
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-EEEEecCCCCChHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEK 240 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-fvEtSAktG~GVee 240 (730)
..+.|+.++++.++..++++ |+|+|||++.||++
T Consensus 128 ---------------------------------------------~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 128 ---------------------------------------------EKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred ---------------------------------------------hheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 34789999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17467 241 LFMQIAAELMEKLAE 255 (730)
Q Consensus 241 LFe~Li~~l~e~~~~ 255 (730)
+|..+...+.++...
T Consensus 163 ~F~~la~~lk~~~~~ 177 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGL 177 (205)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999988655443
No 4
>KOG0078|consensus
Probab=100.00 E-value=7.6e-32 Score=269.69 Aligned_cols=173 Identities=46% Similarity=0.877 Sum_probs=160.3
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
+++++++||+++|+++||||+|+.||..+.|...+..|+|+++..+++..++..+.+++|||+|+++|..+...||+.|+
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
+++||||+++..||+++..|+..|.++.+ +++|.+|||||+|+.
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~-------------------------------~~v~~~LvGNK~D~~----- 130 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHAS-------------------------------DDVVKILVGNKCDLE----- 130 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCC-------------------------------CCCcEEEeecccccc-----
Confidence 99999999999999999999999998763 456666777777775
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.+|+|+.+.++++|..+|+.|+|||||+|.||+++
T Consensus 131 ---------------------------------------------~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 131 ---------------------------------------------EKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred ---------------------------------------------ccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 24899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy17467 242 FMQIAAELMEKLAE 255 (730)
Q Consensus 242 Fe~Li~~l~e~~~~ 255 (730)
|..+++.++.+...
T Consensus 166 F~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 166 FLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHhhcch
Confidence 99999999875444
No 5
>KOG0098|consensus
Probab=99.98 E-value=1e-31 Score=263.48 Aligned_cols=175 Identities=45% Similarity=0.819 Sum_probs=161.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
+.+.+|++++|+.|||||+|+.||+...|.+.+..|+|+++..+++.+++++++|++|||+|++.|+++...||++|.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|||||+++++||..|..|+++++++.. +|..++|+|||+||.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~-------------------------------~NmvImLiGNKsDL~------- 124 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSN-------------------------------ENMVIMLIGNKSDLE------- 124 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcC-------------------------------CCcEEEEEcchhhhh-------
Confidence 999999999999999999999998753 566667777777774
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
..|.|+.||++.||+++|..|+|+||++++||+++|.
T Consensus 125 -------------------------------------------~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 125 -------------------------------------------ARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred -------------------------------------------ccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy17467 244 QIAAELMEKLAEKLTI 259 (730)
Q Consensus 244 ~Li~~l~e~~~~~~~~ 259 (730)
.....+....+.....
T Consensus 162 nta~~Iy~~~q~g~~~ 177 (216)
T KOG0098|consen 162 NTAKEIYRKIQDGVFD 177 (216)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999998877664433
No 6
>KOG0094|consensus
Probab=99.97 E-value=5.2e-31 Score=260.31 Aligned_cols=167 Identities=40% Similarity=0.669 Sum_probs=151.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||++||+.+||||||++||+.+.|..+|.+|+|+|+.++++.+.|..+.|++|||+|+++|+++.+.|+|+++++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++|..||++...|++++....... ++-|+|||||.||.
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~------------------------------~viI~LVGnKtDL~--------- 141 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSD------------------------------DVIIFLVGNKTDLS--------- 141 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCC------------------------------ceEEEEEccccccc---------
Confidence 999999999999999999998765322 23356677777775
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
.+|+++.++++..|+++++.|+|+||++|.||.++|..|
T Consensus 142 -----------------------------------------dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 142 -----------------------------------------DKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred -----------------------------------------chhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 347899999999999999999999999999999999998
Q ss_pred HHHHHHH
Q psy17467 246 AAELMEK 252 (730)
Q Consensus 246 i~~l~e~ 252 (730)
..++...
T Consensus 181 aa~l~~~ 187 (221)
T KOG0094|consen 181 AAALPGM 187 (221)
T ss_pred HHhccCc
Confidence 8877554
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=2.1e-30 Score=258.94 Aligned_cols=166 Identities=34% Similarity=0.660 Sum_probs=151.4
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
++++.+||+++|++|||||||+.+|.++.+...+.++++.++....+.+++..+.+++|||+|++++..++..++++||+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 46788999999999999999999999999988888899988888889999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|||||++++.||+++..|++++.... ++.|++|||||.|+.+
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~--------------------------------~~~piilVGNK~DL~~----- 124 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHA--------------------------------PGVPKILVGNRLHLAF----- 124 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECccchh-----
Confidence 999999999999999999999996532 4678888888888852
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.++.++++.+|+..++.|+||||++|.||+++|
T Consensus 125 ---------------------------------------------~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 125 ---------------------------------------------KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred ---------------------------------------------ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 25688899999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy17467 243 MQIAAELM 250 (730)
Q Consensus 243 e~Li~~l~ 250 (730)
+++++.+.
T Consensus 160 ~~l~~~i~ 167 (189)
T cd04121 160 TELARIVL 167 (189)
T ss_pred HHHHHHHH
Confidence 99998774
No 8
>KOG0092|consensus
Probab=99.97 E-value=7.4e-31 Score=258.95 Aligned_cols=170 Identities=42% Similarity=0.719 Sum_probs=154.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||++||+.+||||||+-||..+.|.....||+|..|..+++.+++..+++.||||+|+++|.++.+.|||+|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45699999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||+|+.+||+.++.|+.++.+..+ +++.+.|||||+||.
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-------------------------------~~~vialvGNK~DL~-------- 123 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-------------------------------PNIVIALVGNKADLL-------- 123 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-------------------------------CCeEEEEecchhhhh--------
Confidence 99999999999999999999988653 445556677777774
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
..|+|..+++..+|...|+.|+|+|||||.||+++|..
T Consensus 124 ------------------------------------------~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 124 ------------------------------------------ERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred ------------------------------------------hcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 23899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 245 IAAELMEKLAE 255 (730)
Q Consensus 245 Li~~l~e~~~~ 255 (730)
|.+.+......
T Consensus 162 Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 162 IAEKLPCSDPQ 172 (200)
T ss_pred HHHhccCcccc
Confidence 99998654443
No 9
>KOG0394|consensus
Probab=99.97 E-value=7.3e-31 Score=257.09 Aligned_cols=177 Identities=34% Similarity=0.625 Sum_probs=159.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
+..++||+++|++|||||||+++|.+.+|...|..|+|.++..+.+.++++.+.++||||+|+++|.++...+||+||++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
++|||++++.||++|..|.+++..+.....| ...|.||+|||.|+...
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~P---------------------------e~FPFVilGNKiD~~~~----- 133 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDP---------------------------ETFPFVILGNKIDVDGG----- 133 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCC---------------------------CcccEEEEcccccCCCC-----
Confidence 9999999999999999999999887643322 45677788887777531
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLF 242 (730)
..|+|+.+.++.||+..| ++|+|+|||.+.||+++|
T Consensus 134 -------------------------------------------~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AF 170 (210)
T KOG0394|consen 134 -------------------------------------------KSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAF 170 (210)
T ss_pred -------------------------------------------ccceeeHHHHHHHHHhcCCceeEEecccccccHHHHH
Confidence 238999999999999885 799999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 243 MQIAAELMEKLAE 255 (730)
Q Consensus 243 e~Li~~l~e~~~~ 255 (730)
+.+.+.++.....
T Consensus 171 e~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 171 EEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHhccch
Confidence 9999999876543
No 10
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=4.2e-30 Score=255.03 Aligned_cols=175 Identities=29% Similarity=0.509 Sum_probs=150.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
++..+||+++|++|||||||+++|.++.|...+.||++.++ .+.+.+++..+.+++|||+|+++|..++..++++||++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 56779999999999999999999999999999999998554 56788899999999999999999999999999999999
Q ss_pred EEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 84 ILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 84 ILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
|+|||++++.||+++ ..|++++.+.. ++.|++|||||.||.++....
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~piilVgNK~DL~~~~~~~ 128 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC--------------------------------PNTKMLLVGCKSDLRTDLTTL 128 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--------------------------------CCCCEEEEeEChhhhcChhhH
Confidence 999999999999998 78999987643 567899999999996432110
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC-hHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN-VEK 240 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G-Vee 240 (730)
.+-.+...+.|+.++++++|+.+|+ .|+||||++|.| |++
T Consensus 129 --------------------------------------~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~ 170 (182)
T cd04172 129 --------------------------------------VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRD 170 (182)
T ss_pred --------------------------------------HHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHH
Confidence 0001112357999999999999996 899999999998 999
Q ss_pred HHHHHHHHH
Q psy17467 241 LFMQIAAEL 249 (730)
Q Consensus 241 LFe~Li~~l 249 (730)
+|+.+++.+
T Consensus 171 ~F~~~~~~~ 179 (182)
T cd04172 171 IFHVATLAC 179 (182)
T ss_pred HHHHHHHHH
Confidence 999999865
No 11
>KOG0080|consensus
Probab=99.97 E-value=1.8e-30 Score=249.30 Aligned_cols=168 Identities=43% Similarity=0.816 Sum_probs=151.5
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
.++.++||+++|++|||||||+-||+.+.|.+....|+|+++..+.+.++|+.+++-||||+|+++|+.+.+.||+.|.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 35788999999999999999999999999999987889999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||+|.+++|..+..|+.++.-++. ++++.
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Yst------------------------------n~dii----------------- 119 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYST------------------------------NPDII----------------- 119 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcC------------------------------CccHh-----------------
Confidence 9999999999999999999999976542 22333
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccccccc-CCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~-~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.|+||||+|.+ +|.|+.+++.++|+.+++.|+|||||+.+||+..
T Consensus 120 ----------------------------------kmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 120 ----------------------------------KMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred ----------------------------------HhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 34555666654 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 242 FMQIAAELME 251 (730)
Q Consensus 242 Fe~Li~~l~e 251 (730)
|+.++..+++
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999988854
No 12
>KOG0095|consensus
Probab=99.97 E-value=4.8e-30 Score=243.68 Aligned_cols=173 Identities=76% Similarity=1.271 Sum_probs=155.1
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA 80 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A 80 (730)
||+|++++||++||..|||||+|++||+.+-|++....|+|+++..++++++|.+++++||||+|+++|+++...||+.|
T Consensus 1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
+++|+|||++...||+.+.+|+.+|.++...+... ++||||.|+.+
T Consensus 81 halilvydiscqpsfdclpewlreie~yan~kvlk-------------------------------ilvgnk~d~~d--- 126 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQYANNKVLK-------------------------------ILVGNKIDLAD--- 126 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHHhhcceEE-------------------------------Eeeccccchhh---
Confidence 99999999999999999999999999987544333 33445555432
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee 240 (730)
.|+|+...++++++....-|.|+||+...||+.
T Consensus 127 -----------------------------------------------rrevp~qigeefs~~qdmyfletsakea~nve~ 159 (213)
T KOG0095|consen 127 -----------------------------------------------RREVPQQIGEEFSEAQDMYFLETSAKEADNVEK 159 (213)
T ss_pred -----------------------------------------------hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHH
Confidence 368899999999999888999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy17467 241 LFMQIAAELMEKLA 254 (730)
Q Consensus 241 LFe~Li~~l~e~~~ 254 (730)
+|..+...+....+
T Consensus 160 lf~~~a~rli~~ar 173 (213)
T KOG0095|consen 160 LFLDLACRLISEAR 173 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998877755433
No 13
>KOG0087|consensus
Probab=99.97 E-value=1.1e-29 Score=253.69 Aligned_cols=177 Identities=43% Similarity=0.786 Sum_probs=163.5
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
++++|++||+++|+++||||-|+.||+.++|.....+|+|+++...++.++++.+..+||||+|+++|+.+...||+.|.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++++|||+|.+.+|+++.+|+.+++.+. +++++++|||||+||.+
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdha-------------------------------d~nivimLvGNK~DL~~---- 133 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHA-------------------------------DSNIVIMLVGNKSDLNH---- 133 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcC-------------------------------CCCeEEEEeecchhhhh----
Confidence 9999999999999999999999998875 46777788888888852
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.|.|+.++++.+|+..+..|+|+||..+.||+++
T Consensus 134 ----------------------------------------------lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 134 ----------------------------------------------LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred ----------------------------------------------ccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 3789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy17467 242 FMQIAAELMEKLAEKLTI 259 (730)
Q Consensus 242 Fe~Li~~l~e~~~~~~~~ 259 (730)
|+.++..+.....++...
T Consensus 168 F~~~l~~I~~~vs~k~~~ 185 (222)
T KOG0087|consen 168 FERVLTEIYKIVSKKQLD 185 (222)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999998776655433
No 14
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.2e-29 Score=248.52 Aligned_cols=172 Identities=30% Similarity=0.516 Sum_probs=146.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|.++.|+..+.||++.++ .+.+.+++..+.+++|||+|++.+..++..++++||++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 7999999999999999999999999999999998555 567888999999999999999999999999999999999999
Q ss_pred ecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 88 DISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 88 Dvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
|++++.||+++ ..|++++.+.. ++.|++|||||.||.++....
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~~iilVgnK~DL~~~~~~~---- 124 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--------------------------------PNTKVLLVGCKTDLRTDLSTL---- 124 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--------------------------------CCCCEEEEEEChhhhcChhHH----
Confidence 99999999996 78999987643 567899999999996421100
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC-hHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN-VEKLFMQ 244 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G-VeeLFe~ 244 (730)
.+-.+...+.++.++++++|+.+|+ .|+||||++|+| |+++|..
T Consensus 125 ----------------------------------~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~ 170 (178)
T cd04131 125 ----------------------------------MELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHV 170 (178)
T ss_pred ----------------------------------HHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHH
Confidence 0111112356899999999999997 899999999995 9999999
Q ss_pred HHHHHH
Q psy17467 245 IAAELM 250 (730)
Q Consensus 245 Li~~l~ 250 (730)
+++..+
T Consensus 171 ~~~~~~ 176 (178)
T cd04131 171 ATMACL 176 (178)
T ss_pred HHHHHh
Confidence 998543
No 15
>KOG0086|consensus
Probab=99.96 E-value=1.1e-29 Score=241.95 Aligned_cols=175 Identities=42% Similarity=0.793 Sum_probs=162.2
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
|.|++++|++++|+.|.|||+|+.+|..++|......|+|+++.++.+.+.++.++++||||+|+++|+++.+.||+.|-
T Consensus 4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA 83 (214)
T KOG0086|consen 4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 83 (214)
T ss_pred hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
+.++|||+++++||+.+..|+.+++... .+++.|+++|||.||.
T Consensus 84 GAlLVYD~TsrdsfnaLtnWL~DaR~lA-------------------------------s~nIvviL~GnKkDL~----- 127 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTNWLTDARTLA-------------------------------SPNIVVILCGNKKDLD----- 127 (214)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHhhC-------------------------------CCcEEEEEeCChhhcC-----
Confidence 9999999999999999999999997654 3677778888888886
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.+|+|+..++.++|++..+.|.|+||+||+||++.
T Consensus 128 ---------------------------------------------~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 128 ---------------------------------------------PEREVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred ---------------------------------------------hhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 34789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy17467 242 FMQIAAELMEKLAEKL 257 (730)
Q Consensus 242 Fe~Li~~l~e~~~~~~ 257 (730)
|-...+.++.+....+
T Consensus 163 Fl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 163 FLKCARTILNKIESGE 178 (214)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999987766543
No 16
>KOG0079|consensus
Probab=99.96 E-value=7.5e-30 Score=242.13 Aligned_cols=171 Identities=43% Similarity=0.763 Sum_probs=154.2
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
++++++|.+|+|++|||||||+.+|..+.|...|..|+|+++..++++++|..+.++||||+|+++|+.+...|++..++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+++|||+|+.+||.++.+|+++|...++ ..|-|+||||.|+.
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncd--------------------------------sv~~vLVGNK~d~~------ 125 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCD--------------------------------SVPKVLVGNKNDDP------ 125 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCc--------------------------------cccceecccCCCCc------
Confidence 9999999999999999999999987662 23334444444442
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
+.|.|..++++.+|...|+.+||+|||+++|++.+|
T Consensus 126 --------------------------------------------~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 126 --------------------------------------------ERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred --------------------------------------------cceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 247889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 243 MQIAAELMEKLAE 255 (730)
Q Consensus 243 e~Li~~l~e~~~~ 255 (730)
.-|.+.++....+
T Consensus 162 ~cit~qvl~~k~r 174 (198)
T KOG0079|consen 162 HCITKQVLQAKLR 174 (198)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877633
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=9.4e-29 Score=249.75 Aligned_cols=163 Identities=47% Similarity=0.823 Sum_probs=146.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+.|+++|++|||||||++||.++.|...+.+|+|.++..+.+.+++..+.+++|||+|++++..++..|+++||++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|+++++||+++..|+..+.+.. .++.|+++||||.|+.+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~-------------------------------~~~~piilVgNK~DL~~---------- 119 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYA-------------------------------SEDAELLLVGNKLDCET---------- 119 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-------------------------------CCCCcEEEEEECccccc----------
Confidence 9999999999999998876532 14578888888888742
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.++++++++.+ ++.|+||||++|.||+++|++++
T Consensus 120 ----------------------------------------~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 120 ----------------------------------------DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred ----------------------------------------ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 3568888999999886 88999999999999999999999
Q ss_pred HHHHH
Q psy17467 247 AELME 251 (730)
Q Consensus 247 ~~l~e 251 (730)
+.+..
T Consensus 160 ~~~~~ 164 (202)
T cd04120 160 DDILK 164 (202)
T ss_pred HHHHH
Confidence 88754
No 18
>KOG0091|consensus
Probab=99.96 E-value=1.5e-29 Score=243.52 Aligned_cols=186 Identities=38% Similarity=0.692 Sum_probs=166.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
..|.++++++|++-||||||+.+|+.++|..-..||+|+|++.+.+++ +|..+++++|||+|+++|+++.+.||+++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 457899999999999999999999999999988999999999999988 5788999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc-eEEeccCCCcchhhHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA-TALASDKTDLDEDEHV 161 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P-VVLVGNK~DL~~~e~~ 161 (730)
+++|||++|++||+.+..|+++...+.. .|..+ ..|||+|+||.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q------------------------------~P~k~VFlLVGhKsDL~----- 129 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQ------------------------------GPDKVVFLLVGHKSDLQ----- 129 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcC------------------------------CCCeeEEEEeccccchh-----
Confidence 9999999999999999999999876543 13333 35677877774
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.+|+|+.||++++|..+|+.|+|+||++|.||++.
T Consensus 130 ---------------------------------------------SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 130 ---------------------------------------------SQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred ---------------------------------------------hhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 35899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccch
Q psy17467 242 FMQIAAELMEKLAEKLTIMHDRGVGMLT 269 (730)
Q Consensus 242 Fe~Li~~l~e~~~~~~~~~~~~~~~~l~ 269 (730)
|..+.+.+..+..+........|.+..+
T Consensus 165 F~mlaqeIf~~i~qGeik~edgw~gvKS 192 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDGWGGVKS 192 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeeccccccc
Confidence 9999999999988877777777776553
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=5.4e-29 Score=246.00 Aligned_cols=169 Identities=30% Similarity=0.563 Sum_probs=145.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|+++||||||+.+|.++.|...+.||++..+ ...+.+++..+.+++|||+|++++..++..++++||++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999999999998655 556788999999999999999999999999999999999999
Q ss_pred ecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 88 DISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 88 Dvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
|+++++||+++ ..|+.++.+.. ++.|++|||||.||.+....+
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~piilvgnK~Dl~~~~~~~---- 124 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA--------------------------------PNVPIVLVGTKLDLRDDKQYL---- 124 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEeChhhccChhhh----
Confidence 99999999998 68999986542 468899999999996422100
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L 245 (730)
+ .....+.++.++++++|+..++ .|+||||++|.||+++|+.+
T Consensus 125 -----------------------------------~-~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~ 168 (176)
T cd04133 125 -----------------------------------A-DHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAA 168 (176)
T ss_pred -----------------------------------h-hccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHH
Confidence 0 0112357889999999999998 69999999999999999999
Q ss_pred HHHH
Q psy17467 246 AAEL 249 (730)
Q Consensus 246 i~~l 249 (730)
++.+
T Consensus 169 ~~~~ 172 (176)
T cd04133 169 IKVV 172 (176)
T ss_pred HHHH
Confidence 9865
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=1.2e-28 Score=237.15 Aligned_cols=163 Identities=41% Similarity=0.802 Sum_probs=146.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++|.++.|...+.++++.++....+.+++..+.+++|||+|++++...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999988888999888888888999999999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.||+.+..|+..+.... .++.|+++||||+|+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iiiv~nK~Dl~~--------- 121 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT-------------------------------NPNTVIFLIGNKADLEA--------- 121 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEECccccc---------
Confidence 99999999999999999876532 25677888888888852
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.+++.++++..+++|+||||++|.||+++|..++
T Consensus 122 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 122 -----------------------------------------QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred -----------------------------------------ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 245678899999999999999999999999999999999
Q ss_pred HHHH
Q psy17467 247 AELM 250 (730)
Q Consensus 247 ~~l~ 250 (730)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd04122 161 KKIY 164 (166)
T ss_pred HHHh
Confidence 8774
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=9.9e-29 Score=254.91 Aligned_cols=177 Identities=28% Similarity=0.476 Sum_probs=150.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||++||++|||||||+++|.++.|...+.||++.++ ...+.+++..+.++||||+|+++|..++..++++||++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 3678999999999999999999999999999999998665 556888999999999999999999999999999999999
Q ss_pred EEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 85 LVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 85 LVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
+|||++++.||+++ ..|++++.+.. ++.|++|||||.||.++....
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~piilVgNK~DL~~~~~~~- 136 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC--------------------------------PSTRILLIGCKTDLRTDLSTL- 136 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECcccccccchh-
Confidence 99999999999985 78999987543 467899999999996432100
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCC-ChHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASD-NVEKL 241 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~-GVeeL 241 (730)
.+-.+...+.|+.++++++|+.+|+ .|+||||++|. ||+++
T Consensus 137 -------------------------------------~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~ 179 (232)
T cd04174 137 -------------------------------------MELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSI 179 (232)
T ss_pred -------------------------------------hhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHH
Confidence 0001112467999999999999999 69999999998 89999
Q ss_pred HHHHHHHHHHH
Q psy17467 242 FMQIAAELMEK 252 (730)
Q Consensus 242 Fe~Li~~l~e~ 252 (730)
|..++..+.+.
T Consensus 180 F~~~~~~~~~~ 190 (232)
T cd04174 180 FRSASLLCLNK 190 (232)
T ss_pred HHHHHHHHHHh
Confidence 99999988643
No 22
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=1.4e-28 Score=244.54 Aligned_cols=173 Identities=27% Similarity=0.509 Sum_probs=145.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+.||..+.|...+.||++..+ ...+.+++..+.+++|||+|+++|..++..++++||++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999999999998544 55677899999999999999999999999999999999999
Q ss_pred eecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 87 YDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 87 yDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
||++++.||+++. .|++++.+.. ++.|++|||||.||.+.......
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~piilvgNK~DL~~~~~~~~~- 128 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC--------------------------------PNVPILLVGTKKDLRNDADTLKK- 128 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEEeChhhhcChhhHHH-
Confidence 9999999999997 5888775432 46899999999999643210000
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~ 244 (730)
-.+...+.++.++++++|+.++ +.|+||||++|.||+++|+.
T Consensus 129 -------------------------------------~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~ 171 (191)
T cd01875 129 -------------------------------------LKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAE 171 (191)
T ss_pred -------------------------------------HhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHH
Confidence 0011235678899999999998 58999999999999999999
Q ss_pred HHHHHH
Q psy17467 245 IAAELM 250 (730)
Q Consensus 245 Li~~l~ 250 (730)
+++.+.
T Consensus 172 l~~~~~ 177 (191)
T cd01875 172 AVRAVL 177 (191)
T ss_pred HHHHHh
Confidence 998774
No 23
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=2.3e-28 Score=237.42 Aligned_cols=168 Identities=35% Similarity=0.662 Sum_probs=147.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC----------CeEEEEEEEeCCCchhhhhhh
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN----------NERIKLQIWDTAGQERFRSIT 73 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd----------g~~v~LqLwDTpG~e~~~sl~ 73 (730)
+++.+||+++|++|||||||+++|.++.+...+.+|++.++....+.+. +..+.++||||+|++++..++
T Consensus 1 ~~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 1 YDYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 3567999999999999999999999999999999999988877777664 456899999999999999999
Q ss_pred HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
..+++++|++|+|||+++++||+++..|+.++.... ..++.|+++||||+
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piiiv~nK~ 130 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA------------------------------YCENPDIVLCGNKA 130 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCcEEEEEeCc
Confidence 999999999999999999999999999999986542 12467888888888
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK 233 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk 233 (730)
|+.+ .+.++.+++.++++..++++++|||+
T Consensus 131 Dl~~--------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 131 DLED--------------------------------------------------QRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred cchh--------------------------------------------------cCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 8852 24567788999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHH
Q psy17467 234 ASDNVEKLFMQIAAELME 251 (730)
Q Consensus 234 tG~GVeeLFe~Li~~l~e 251 (730)
+|.|++++|+.+++.+.+
T Consensus 161 ~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 161 TGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 24
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=1.8e-28 Score=240.47 Aligned_cols=171 Identities=27% Similarity=0.505 Sum_probs=144.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
++||+++|++|||||||+++|.++.|...+.||++..+ ...+.+++..+.++||||+|++++..++..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 47999999999999999999999999888999998555 45677889899999999999999999999999999999999
Q ss_pred eecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 87 YDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 87 yDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
||+++++||+++. .|+..+.... ++.|++|||||.|+.+.....
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~--------------------------------~~~piilvgnK~Dl~~~~~~~--- 124 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC--------------------------------PKTPFLLVGTQIDLRDDPSTI--- 124 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECHhhhhChhhH---
Confidence 9999999999997 4988875432 468999999999986432211
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccc-cCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDR-EDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL-~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe 243 (730)
++... ..+.++.++++++++..+ +.|+||||++|.||+++|+
T Consensus 125 ------------------------------------~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~ 168 (175)
T cd01874 125 ------------------------------------EKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFD 168 (175)
T ss_pred ------------------------------------HHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHH
Confidence 11111 236789999999999988 6899999999999999999
Q ss_pred HHHHHH
Q psy17467 244 QIAAEL 249 (730)
Q Consensus 244 ~Li~~l 249 (730)
.+++.+
T Consensus 169 ~~~~~~ 174 (175)
T cd01874 169 EAILAA 174 (175)
T ss_pred HHHHHh
Confidence 998754
No 25
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.96 E-value=2.3e-29 Score=283.53 Aligned_cols=245 Identities=19% Similarity=0.122 Sum_probs=193.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhhhh-
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ----------ERFRSIT- 73 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~----------e~~~sl~- 73 (730)
..+||+++|.+|||||||+|+|++..+ .....++++.+.....+.+++. .+.+|||||. +.+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 358999999999999999999998875 3445577777777778888874 4679999995 2333332
Q ss_pred HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
..++++||++|+|||++++.+++++. ++..+.. .+.|+++|+||+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----------------------------------~~~piIiV~NK~ 332 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----------------------------------AGRALVLAFNKW 332 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----------------------------------cCCCEEEEEECc
Confidence 24678999999999999999988764 3333321 467889999999
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK 233 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk 233 (730)
|+.+.... ..+..+..+.++....+++++|||+
T Consensus 333 Dl~~~~~~-----------------------------------------------~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 333 DLVDEDRR-----------------------------------------------YYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred ccCChhHH-----------------------------------------------HHHHHHHHHhcccCCCCCEEEEECC
Confidence 99642110 0011111223333345789999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeeec
Q psy17467 234 ASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVS 313 (730)
Q Consensus 234 tG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~ 313 (730)
+|.||+++|+.+.+.+..+..+.++...+++...+ ...++||...+++.+..|++|.+..||.|+.+++
T Consensus 366 ~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~-----------~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~~~ 434 (472)
T PRK03003 366 TGRAVDKLVPALETALESWDTRIPTGRLNAWLGEL-----------VAATPPPVRGGKQPRILFATQASTRPPTFVLFTT 434 (472)
T ss_pred CCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH-----------HHcCCCCCCCCeeeeEEEEECCCCCCCEEEEEeC
Confidence 99999999999999998888888888888887777 4567788888999999999999999999999954
Q ss_pred cccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467 314 GISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG 347 (730)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (730)
+.++++|.|||.|.+|+.|++-|+|+++.+++
T Consensus 435 --~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~ 466 (472)
T PRK03003 435 --GFLEAGYRRFLERRLRETFGFEGSPIRISVRV 466 (472)
T ss_pred --CCCChHHHHHHHHHHHHHcCCCcceEEEEEEe
Confidence 78999999999999999999999999999987
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=3e-28 Score=238.05 Aligned_cols=164 Identities=27% Similarity=0.511 Sum_probs=144.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+|+|++|||||||+++|.++.|...+.||++..+ ...+.+++..+.+++|||+|++++..++..+++++|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999999988889998444 55678899999999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.||+.+..|+..+.+.. ..+++|+++||||+|+.+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~------------------------------~~~~~piilvgNK~Dl~~--------- 121 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVR------------------------------LTEDIPLVLVGNKVDLES--------- 121 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEEChhhhh---------
Confidence 99999999999999988876532 125678888888888742
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.++++++++.++++|+||||++|.||+++|++++
T Consensus 122 -----------------------------------------~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 122 -----------------------------------------QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred -----------------------------------------cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 256788899999999999999999999999999999999
Q ss_pred HHHHH
Q psy17467 247 AELME 251 (730)
Q Consensus 247 ~~l~e 251 (730)
+.+.+
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 88754
No 27
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=4.4e-28 Score=233.74 Aligned_cols=165 Identities=47% Similarity=0.864 Sum_probs=148.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
++.+||+++|++|||||||+++|.++.|...+.|+.+.++....+.+++..+.+++|||+|++.+..++..++++||++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999999999999998888888889998899999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.||+.+..|+..+.+.. ..+.|+++||||+|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~p~iiv~nK~Dl~~------- 122 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHA-------------------------------SEDVERMLVGNKCDMEE------- 122 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhC-------------------------------CCCCcEEEEEECccccc-------
Confidence 9999999999999999999987642 14678888889888852
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+.+..+++..+++.+++++++|||++|.||+++|++
T Consensus 123 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 123 -------------------------------------------KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred -------------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 2356678888999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 245 IAAELM 250 (730)
Q Consensus 245 Li~~l~ 250 (730)
+++.+.
T Consensus 160 i~~~~~ 165 (167)
T cd01867 160 LAKDIK 165 (167)
T ss_pred HHHHHH
Confidence 998874
No 28
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=8.2e-28 Score=240.03 Aligned_cols=171 Identities=33% Similarity=0.621 Sum_probs=149.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
+||+|+|++|||||||+++|+++.+...+.||++.++....+.++ +..+.+++|||+|++++..++..++++||++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999999999999988888888888 8889999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||+++++||+.+..|+.++..... .....+.|++|||||+|+.+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~---------------------------~~~~~~~piilv~NK~Dl~~--------- 124 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVT---------------------------LPNGEPIPCLLLANKCDLKK--------- 124 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhc---------------------------ccCCCCCcEEEEEECCCccc---------
Confidence 999999999999999998865421 00125678888888888842
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~L 245 (730)
.+.++.++++++++..+ +.|++|||++|.||+++|+++
T Consensus 125 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l 163 (201)
T cd04107 125 -----------------------------------------RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFL 163 (201)
T ss_pred -----------------------------------------ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHH
Confidence 24567889999999999 689999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 246 AAELMEKLAE 255 (730)
Q Consensus 246 i~~l~e~~~~ 255 (730)
++.+......
T Consensus 164 ~~~l~~~~~~ 173 (201)
T cd04107 164 VKNILANDKN 173 (201)
T ss_pred HHHHHHhchh
Confidence 9998765443
No 29
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=1.6e-27 Score=228.55 Aligned_cols=164 Identities=47% Similarity=0.858 Sum_probs=146.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
+++||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+++||++|++++..++..+++++|++|+
T Consensus 1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 35899999999999999999999999988888999988888889899988999999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||+++++||+.+..|+..+.... .++.|+++||||+|+..
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-------------------------------~~~~~~iiv~nK~Dl~~-------- 121 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYA-------------------------------SENVNKLLVGNKCDLTD-------- 121 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-------------------------------CCCCcEEEEEEChhccc--------
Confidence 999999999999999999986542 14578888888888742
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
.+.+..+++..+++..+++++++||++|.||+++|+.+
T Consensus 122 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 122 ------------------------------------------KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred ------------------------------------------ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 23567788999999999999999999999999999999
Q ss_pred HHHHH
Q psy17467 246 AAELM 250 (730)
Q Consensus 246 i~~l~ 250 (730)
++.+.
T Consensus 160 ~~~~~ 164 (166)
T cd01869 160 AREIK 164 (166)
T ss_pred HHHHH
Confidence 98774
No 30
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.6e-27 Score=239.73 Aligned_cols=181 Identities=40% Similarity=0.698 Sum_probs=154.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+.+||+|+|++|||||||+++|+++.+...+.||++.++..+.+.+ ++..+.+++|||+|++.+..++..+++++|++|
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 3589999999999999999999999998888899998988888887 467889999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||+++++||+++..|+.++..... ....|++|||||+|+.+
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~------------------------------~~~~~iilvgNK~Dl~~------- 123 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQ------------------------------PHRPVFILVGHKCDLES------- 123 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCeEEEEEEcccccc-------
Confidence 99999999999999999999875431 13456777888888742
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+.++.+++.++++.+++.|+||||++|.||+++|+.
T Consensus 124 -------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 124 -------------------------------------------QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred -------------------------------------------ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 2467788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccccc
Q psy17467 245 IAAELMEKLAEKLTIMHDRGVG 266 (730)
Q Consensus 245 Li~~l~e~~~~~~~~~~~~~~~ 266 (730)
|++.+.+............|.+
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~ 182 (211)
T cd04111 161 LTQEIYERIKRGELCALDGWDG 182 (211)
T ss_pred HHHHHHHHhhcCCCCccccccc
Confidence 9999877765554445555543
No 31
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=2.3e-27 Score=228.34 Aligned_cols=162 Identities=38% Similarity=0.725 Sum_probs=143.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|.++.+...+.|++|.++....+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888899998888778888888899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++++|+.+..|+..+.+.. .++.|+++||||+|+.+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piivv~nK~Dl~~---------- 120 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-------------------------------WDNAQVILVGNKCDMED---------- 120 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCCEEEEEECcccCc----------
Confidence 9999999999999999986532 13567888888888752
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.+..+++.++++.+++++++|||++|.||+++|++++.
T Consensus 121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 121 ----------------------------------------ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ----------------------------------------ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 2345678888899999999999999999999999999988
Q ss_pred HHH
Q psy17467 248 ELM 250 (730)
Q Consensus 248 ~l~ 250 (730)
.+.
T Consensus 161 ~~~ 163 (165)
T cd01865 161 IIC 163 (165)
T ss_pred HHH
Confidence 663
No 32
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=1.5e-27 Score=244.69 Aligned_cols=173 Identities=28% Similarity=0.505 Sum_probs=145.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+|||++|||||||+++|.++.|+..|.||++.++ ...+.+++..+.|.||||+|++.|..++..+++++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 7999999999999999999999999999999998555 567888999999999999999999999999999999999999
Q ss_pred ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
|+++++||+++. .|..++.... ++.|++|||||.|+.++......+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~--------------------------------~~~piiLVgnK~DL~~~~~~~~~~- 127 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC--------------------------------PNAKVVLVGCKLDMRTDLATLREL- 127 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEEECcccccchhhhhhh-
Confidence 999999999995 5777664432 678999999999997542211000
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC-hHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN-VEKLFMQ 244 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G-VeeLFe~ 244 (730)
+. .....++.++++.+|+..|+ .|+||||+++.| |+++|+.
T Consensus 128 -----------------------------------~~--~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~ 170 (222)
T cd04173 128 -----------------------------------SK--QRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHV 170 (222)
T ss_pred -----------------------------------hh--ccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHH
Confidence 00 01135788999999999996 899999999985 9999999
Q ss_pred HHHHHHH
Q psy17467 245 IAAELME 251 (730)
Q Consensus 245 Li~~l~e 251 (730)
++...+.
T Consensus 171 ~~~~~~~ 177 (222)
T cd04173 171 ATVASLG 177 (222)
T ss_pred HHHHHHh
Confidence 9997754
No 33
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=2.1e-27 Score=232.72 Aligned_cols=170 Identities=26% Similarity=0.475 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+.+|+++.|...+.|+++ +.+...+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999999988989987 555667788998999999999999999999999999999999999
Q ss_pred ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
|+++++||+++. .|+..+.... ++.|+++||||.|+.+......
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~--------------------------------~~~piilvgnK~Dl~~~~~~~~--- 125 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC--------------------------------PNTPIILVGTKLDLRDDKDTIE--- 125 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEeeChhhccChhhHH---
Confidence 999999999996 5888875432 5689999999999964221100
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L 245 (730)
+-.....+.++.+++.++++.+++ .|+||||++|.||+++|+.+
T Consensus 126 -----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 126 -----------------------------------KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred -----------------------------------HHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHH
Confidence 000112357899999999999985 99999999999999999999
Q ss_pred HHH
Q psy17467 246 AAE 248 (730)
Q Consensus 246 i~~ 248 (730)
++.
T Consensus 171 ~~~ 173 (174)
T cd01871 171 IRA 173 (174)
T ss_pred HHh
Confidence 864
No 34
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.95 E-value=2.7e-27 Score=227.80 Aligned_cols=160 Identities=40% Similarity=0.798 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|+++.|...+.||++.++....+.+++..+.+++||++|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999999888999998888888999998899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|+++++||+.+..|++++.... ..+.|+++||||.|+.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-------------------------------~~~~~iilvgnK~Dl~~---------- 119 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-------------------------------PEGVQKILIGNKADEEQ---------- 119 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEECccccc----------
Confidence 9999999999999999886542 13577888888888742
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.++.+++..+++.++++|+||||++|.||+++|++|++
T Consensus 120 ----------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 120 ----------------------------------------KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred ----------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 3567789999999999999999999999999999999986
Q ss_pred H
Q psy17467 248 E 248 (730)
Q Consensus 248 ~ 248 (730)
.
T Consensus 160 ~ 160 (161)
T cd04117 160 L 160 (161)
T ss_pred h
Confidence 4
No 35
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=3.2e-27 Score=224.87 Aligned_cols=161 Identities=39% Similarity=0.771 Sum_probs=148.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
||+++|+++||||||+++|.++.|...+.||.|.+.....+.+++..+.+++||++|++++..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~ 168 (730)
+++++||+.+..|++.+..... .+.|++|+|||.|+.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-------------------------------~~~~iivvg~K~D~~~----------- 118 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-------------------------------EDIPIIVVGNKSDLSD----------- 118 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-------------------------------TTSEEEEEEETTTGGG-----------
T ss_pred cccccccccccccccccccccc-------------------------------ccccceeeeccccccc-----------
Confidence 9999999999999999987652 3567778888888752
Q ss_pred hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
.+.++.++++++++.++++|+||||+++.||.++|..+++.
T Consensus 119 ---------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 119 ---------------------------------------EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp ---------------------------------------GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred ---------------------------------------cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999988
Q ss_pred HH
Q psy17467 249 LM 250 (730)
Q Consensus 249 l~ 250 (730)
+.
T Consensus 160 i~ 161 (162)
T PF00071_consen 160 IL 161 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 36
>KOG0093|consensus
Probab=99.95 E-value=6.4e-28 Score=228.83 Aligned_cols=172 Identities=39% Similarity=0.751 Sum_probs=156.6
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
..++.+|+.|+|+..||||||+.|+.+..|.+.+.+|+|+++..+++.-..+.+.+++|||+|+++++.+...||++|++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 45788999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|||||++|.+||..++.|...|+.++- .++||++||||+|++
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw-------------------------------~naqvilvgnKCDmd------ 139 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSW-------------------------------DNAQVILVGNKCDMD------ 139 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeec-------------------------------cCceEEEEecccCCc------
Confidence 9999999999999999999999976542 467777777777775
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+|.++.|.++.++..+|..|+|+|||.+.||+++|
T Consensus 140 --------------------------------------------~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 140 --------------------------------------------SERVISHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred --------------------------------------------cceeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 347899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 243 MQIAAELMEKLAE 255 (730)
Q Consensus 243 e~Li~~l~e~~~~ 255 (730)
+.++..+.++..+
T Consensus 176 e~lv~~Ic~kmse 188 (193)
T KOG0093|consen 176 ERLVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988665443
No 37
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.95 E-value=2.3e-27 Score=225.32 Aligned_cols=161 Identities=32% Similarity=0.586 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||++++.++.+...+.||++ +.+...+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888888887 566777888998999999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.||+++..|++.+..... .++.|+++||||+|+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~nK~Dl~~---------- 120 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKD------------------------------TENVPMVLVGNKCDLED---------- 120 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEEECccccc----------
Confidence 99999999999999999876431 14678888888888842
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.++.+++..+++.+++++++|||++|.||+++|+++++
T Consensus 121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 121 ----------------------------------------ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ----------------------------------------cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 1345667788888888999999999999999999999987
Q ss_pred HH
Q psy17467 248 EL 249 (730)
Q Consensus 248 ~l 249 (730)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 38
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=4.5e-27 Score=224.83 Aligned_cols=164 Identities=43% Similarity=0.792 Sum_probs=145.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
++.+||+++|++|||||||++++.++.+...+.|+++.++....+..++..+.+++||++|++++..++..++++++++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 35689999999999999999999999998888899998888899999998899999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+++..|+..+.+... .+.|+++||||+|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~pi~vv~nK~Dl~~------- 122 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHAD-------------------------------SNIVIMLVGNKSDLRH------- 122 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-------------------------------CCCeEEEEEECccccc-------
Confidence 99999999999999999999876531 2568888888888752
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+.+..++...++...++.++||||++|.||+++|+.
T Consensus 123 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 123 -------------------------------------------LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred -------------------------------------------cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 2456778888999888999999999999999999999
Q ss_pred HHHHH
Q psy17467 245 IAAEL 249 (730)
Q Consensus 245 Li~~l 249 (730)
++..+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 98764
No 39
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.95 E-value=5.4e-29 Score=273.03 Aligned_cols=253 Identities=17% Similarity=0.072 Sum_probs=200.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH-----------
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ----------- 74 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~----------- 74 (730)
.+||+|+|.||||||||+|++++.+.... ..+.++.|.....+++++ -.+.++||+|..+...+..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhhH
Confidence 59999999999999999999999876543 445555555555666667 5689999999765433332
Q ss_pred hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 75 SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 75 ~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
..+..||++++|.|++.+-+-++.+ ... .+.+.+.++++|.||||
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~----------------------------------~i~~~g~~~vIvvNKWD 300 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAG----------------------------------LIEEAGRGIVIVVNKWD 300 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHH----------------------------------HHHHcCCCeEEEEEccc
Confidence 4477899999999999988777654 111 22346789999999999
Q ss_pred cchhhH-HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HHHHHhcCCeEEEEec
Q psy17467 155 LDEDEH-VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDFAKRHDMYYLETSA 232 (730)
Q Consensus 155 L~~~e~-~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~lak~lg~~fvEtSA 232 (730)
+.+..+ .. ... .++. +.+...-.++.+++||
T Consensus 301 l~~~~~~~~----------------------------------------------~~~-k~~i~~~l~~l~~a~i~~iSA 333 (444)
T COG1160 301 LVEEDEATM----------------------------------------------EEF-KKKLRRKLPFLDFAPIVFISA 333 (444)
T ss_pred cCCchhhHH----------------------------------------------HHH-HHHHHHHhccccCCeEEEEEe
Confidence 865311 00 000 1122 2233333578999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeee
Q psy17467 233 KASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSV 312 (730)
Q Consensus 233 ktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~ 312 (730)
++|.|++++|+.+......+..+.++...+++...+ ...++|+.-.+++.+..|++|.+..||.|+.++
T Consensus 334 ~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a-----------~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~ 402 (444)
T COG1160 334 LTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDA-----------VAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFG 402 (444)
T ss_pred cCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHH-----------HHhCCCCccCCceEEEEEEecCCCCCCEEEEEe
Confidence 999999999999999999999999999999988887 445567777799999999999999999999999
Q ss_pred ccccccchhhHHHhHhhhhhhhccCCceeEEEeecCCchhhhh
Q psy17467 313 SGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSGHFDAQIAS 355 (730)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (730)
++++.++.+|.|||+|.+|+.|++.|+|+++.+++ .+|||++
T Consensus 403 N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~-~~~~~~~ 444 (444)
T COG1160 403 NRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKK-KKNPYAG 444 (444)
T ss_pred cchhhCchHHHHHHHHHHHHHcCCCCCcEEEEEec-CCCccCC
Confidence 99999999999999999999999999999999999 8888763
No 40
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=5.3e-27 Score=234.39 Aligned_cols=170 Identities=45% Similarity=0.741 Sum_probs=150.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
++++.+||+|+|++|||||||+++|.++.+...+.||++.++....+.+++..+.+.|||++|++.+..++..+++++|+
T Consensus 2 ~~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 2 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 35678999999999999999999999999988888999988888888888988999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||+++++||+.+..|++.+.... +..|+++||||+|+.+
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~piivVgNK~Dl~~----- 124 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQNC--------------------------------DDVCKVLVGNKNDDPE----- 124 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECccccc-----
Confidence 999999999999999999999986532 4568888888888742
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.++.+++..+++..++.|++|||++|.||+++|
T Consensus 125 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 125 ---------------------------------------------RKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159 (199)
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHH
Confidence 13466788889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 243 MQIAAELMEKLA 254 (730)
Q Consensus 243 e~Li~~l~e~~~ 254 (730)
++|++.+.....
T Consensus 160 ~~l~~~~~~~~~ 171 (199)
T cd04110 160 NCITELVLRAKK 171 (199)
T ss_pred HHHHHHHHHhhh
Confidence 999998865433
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=6.1e-27 Score=222.19 Aligned_cols=167 Identities=26% Similarity=0.626 Sum_probs=146.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|+++.+...+.|+++.++....+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.+|+.+..|+.++.+..... ....+.|+++|+||+|+.+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~--------------------------~~~~~~piilv~nK~Dl~~---------- 124 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPH--------------------------GNMENIVVVVCANKIDLTK---------- 124 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhcccc--------------------------ccCCCceEEEEEEchhccc----------
Confidence 9999999999999999997654210 0124678888888888742
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
++.++.++++.+++..++++++|||++|.||+++|+.|++
T Consensus 125 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 125 ----------------------------------------HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred ----------------------------------------ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 2456778888899999999999999999999999999998
Q ss_pred HHH
Q psy17467 248 ELM 250 (730)
Q Consensus 248 ~l~ 250 (730)
.++
T Consensus 165 ~l~ 167 (168)
T cd04119 165 SIV 167 (168)
T ss_pred HHh
Confidence 774
No 42
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=3.6e-27 Score=240.21 Aligned_cols=162 Identities=31% Similarity=0.571 Sum_probs=143.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+++|++|||||||+++|+.+.+...+.||+|.++....+..++..+.+++|||+|++++..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999999999999999988888888888899999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.||+.+..|+.++.+.. ++.|++|||||+|+.+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--------------------------------~~~piilvgNK~Dl~~------- 131 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--------------------------------ENIPIVLCGNKVDVKN------- 131 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--------------------------------CCCcEEEEEEchhhhh-------
Confidence 9999999999999999999987542 4678888888888842
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
+.+..+++ .+++..++.|+||||++|.||+++|++
T Consensus 132 --------------------------------------------~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 132 --------------------------------------------RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred --------------------------------------------ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 23344444 677788899999999999999999999
Q ss_pred HHHHHH
Q psy17467 245 IAAELM 250 (730)
Q Consensus 245 Li~~l~ 250 (730)
+++.+.
T Consensus 167 l~~~~~ 172 (219)
T PLN03071 167 LARKLA 172 (219)
T ss_pred HHHHHH
Confidence 998774
No 43
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=6.3e-27 Score=231.52 Aligned_cols=167 Identities=32% Similarity=0.529 Sum_probs=145.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++|.++.+...+.||++.++ .+.+.+++..+.+++|||+|++++..++..+++++|++|+|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 48999999999999999999999999888889888544 67788899899999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.||+.+..|+..+.+.. ..++.|+++||||.|+.+
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piiiv~nK~Dl~~--------- 124 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVK------------------------------DKDRVPMILVGNKCDLDS--------- 124 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccccc---------
Confidence 99999999999999999886542 124678888888888742
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.+++..+++.++++|++|||++|.||+++|++++
T Consensus 125 -----------------------------------------~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 125 -----------------------------------------ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred -----------------------------------------ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 245667788888888899999999999999999999999
Q ss_pred HHHHHHHH
Q psy17467 247 AELMEKLA 254 (730)
Q Consensus 247 ~~l~e~~~ 254 (730)
+.+.....
T Consensus 164 ~~l~~~~~ 171 (189)
T PTZ00369 164 REIRKYLK 171 (189)
T ss_pred HHHHHHhh
Confidence 88865433
No 44
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=6.2e-27 Score=236.80 Aligned_cols=167 Identities=35% Similarity=0.575 Sum_probs=146.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC-eEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN-ERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg-~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
+||+++|++|||||||+++|.++.|...+.||++.+++.+.+.+++ ..+.++||||+|++.+..++..++++||++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999999888888865 578999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||+++++||+++..|+..+.+.... ...+.|+++||||+|+.+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~----------------------------~~~~~piilVgNK~DL~~--------- 123 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKS----------------------------SETQPLVVLVGNKTDLEH--------- 123 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccc----------------------------cCCCceEEEEEECccccc---------
Confidence 9999999999999999999765310 013567778888888742
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.++++.+++.+++.+++|||++|.||+++|++++
T Consensus 124 -----------------------------------------~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 124 -----------------------------------------NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred -----------------------------------------ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 356788899999999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 247 AELMEK 252 (730)
Q Consensus 247 ~~l~e~ 252 (730)
+.+...
T Consensus 163 ~~l~~~ 168 (215)
T cd04109 163 AELLGV 168 (215)
T ss_pred HHHHhc
Confidence 887653
No 45
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=5.2e-27 Score=232.23 Aligned_cols=166 Identities=30% Similarity=0.507 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||++||+++.|...+.||+|.++..+.+.+++..+.+++|||+|++++..++..++++||++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999989999998888888999999999999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.||+++..|++++.+... ...| ++||||+|+..+..
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-------------------------------~~~p-ilVgnK~Dl~~~~~------- 121 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-------------------------------TAIP-ILVGTKYDLFADLP------- 121 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-------------------------------CCCE-EEEEEchhcccccc-------
Confidence 99999999999999999866431 2345 56789999853100
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
+ ..+....++++++++..++++++|||++|.||+++|+++++
T Consensus 122 -----------------------------------~---~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~ 163 (182)
T cd04128 122 -----------------------------------P---EEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLA 163 (182)
T ss_pred -----------------------------------c---hhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 0 01112246788899999999999999999999999999998
Q ss_pred HHH
Q psy17467 248 ELM 250 (730)
Q Consensus 248 ~l~ 250 (730)
.+.
T Consensus 164 ~l~ 166 (182)
T cd04128 164 KAF 166 (182)
T ss_pred HHH
Confidence 774
No 46
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=1.1e-26 Score=235.92 Aligned_cols=170 Identities=43% Similarity=0.775 Sum_probs=152.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
.++.+||+++|++|||||||+++|.++.+...+.+|+|.++..+.+.+++..+.++||||+|++++..++..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 45789999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.+|+.+..|+..+.... ..+.|+++||||+|+..
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~piiiv~nK~Dl~~------ 131 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHA-------------------------------DSNIVIMMAGNKSDLNH------ 131 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEEChhccc------
Confidence 99999999999999999999986643 14678888888888742
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+.++.++++.++...+++|++|||++|.||+++|+
T Consensus 132 --------------------------------------------~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 132 --------------------------------------------LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred --------------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 246777889999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 244 QIAAELMEKLA 254 (730)
Q Consensus 244 ~Li~~l~e~~~ 254 (730)
.+++.+.+...
T Consensus 168 ~l~~~i~~~~~ 178 (216)
T PLN03110 168 TILLEIYHIIS 178 (216)
T ss_pred HHHHHHHHHhh
Confidence 99999876543
No 47
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.95 E-value=1.4e-27 Score=264.43 Aligned_cols=247 Identities=19% Similarity=0.089 Sum_probs=184.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh-----------
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT----------- 73 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~----------- 73 (730)
..+||+++|.+|||||||++++++.... ....+.++.+.....+.+++ ..+.+|||||..+.....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence 3589999999999999999999987643 33345555555556666666 468999999975443221
Q ss_pred HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
..+++.||++|+|+|++++.+.++.. ++..+. ..+.|+++|+||+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~----------------------------------~~~~~iiiv~NK~ 293 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLIL----------------------------------EAGKALVIVVNKW 293 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH----------------------------------HcCCcEEEEEECc
Confidence 24688999999999999988877653 222221 1357899999999
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK 233 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk 233 (730)
|+.++.... ..+..+....+....++++++|||+
T Consensus 294 Dl~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~vi~~SA~ 327 (429)
T TIGR03594 294 DLVKDEKTR----------------------------------------------EEFKKELRRKLPFLDFAPIVFISAL 327 (429)
T ss_pred ccCCCHHHH----------------------------------------------HHHHHHHHHhcccCCCCceEEEeCC
Confidence 996211100 0011111122222235789999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeeec
Q psy17467 234 ASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVS 313 (730)
Q Consensus 234 tG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~ 313 (730)
+|.||+++|+++.+.+..+..+.++...+++...+ ...++||...+++.+..|++|.+..||.|+.+++
T Consensus 328 ~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~-----------~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n 396 (429)
T TIGR03594 328 TGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEA-----------VAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGN 396 (429)
T ss_pred CCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHH-----------HHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEc
Confidence 99999999999999887766666666555555444 2345677778888999999999999999999999
Q ss_pred cccccchhhHHHhHhhhhhhhccCCceeEEEee
Q psy17467 314 GISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLS 346 (730)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (730)
.++.++.+|.|||.|.+|+.|++.|+|+++.++
T Consensus 397 ~~~~~~~~y~~~l~~~~~~~~~~~g~p~~~~~~ 429 (429)
T TIGR03594 397 RPELLPFSYKRYLENQFREAFGFEGTPIRLEFK 429 (429)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCcceEEEEeC
Confidence 999999999999999999999999999999885
No 48
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=5.8e-27 Score=224.23 Aligned_cols=161 Identities=34% Similarity=0.595 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++++++.+...+.||++..+ ...+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 7999999999999999999999999888888887444 567888888899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.||+.+..|+..+.... ..++.|+++||||+|+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~---------- 120 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVK------------------------------DTEDVPMILVGNKCDLED---------- 120 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECCcchh----------
Confidence 9999999999999999986542 125678888999999853
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
++.++.+++..+++.++++|++|||++|.||+++|.++++
T Consensus 121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 121 ----------------------------------------ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ----------------------------------------ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 1345567778889889999999999999999999999987
Q ss_pred HH
Q psy17467 248 EL 249 (730)
Q Consensus 248 ~l 249 (730)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 65
No 49
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=7e-27 Score=231.45 Aligned_cols=171 Identities=31% Similarity=0.528 Sum_probs=142.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
||+++|++|||||||+++|.++.|...+.||++.++ ...+.+++..+.++||||+|++.+..++..+++++|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 899999999999999999999999988889998554 4567778888999999999999999999999999999999999
Q ss_pred cCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 89 ISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 89 vtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
++++.||+.+. .|+..+.... ++.|+++||||+|+.+.......
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~--------------------------------~~~piilvgNK~Dl~~~~~~~~~--- 125 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC--------------------------------PGVKLVLVALKCDLREARNERDD--- 125 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhhccChhhHHH---
Confidence 99999999986 5988886432 46899999999999753221000
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~Li 246 (730)
. .+ ...+.++.+++.++++..+ +.|+||||++|.||+++|++++
T Consensus 126 ---------------------~------------~~--~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~ 170 (189)
T cd04134 126 ---------------------L------------QR--YGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAA 170 (189)
T ss_pred ---------------------H------------hh--ccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHH
Confidence 0 00 1224577889999998887 6899999999999999999999
Q ss_pred HHHH
Q psy17467 247 AELM 250 (730)
Q Consensus 247 ~~l~ 250 (730)
+.+.
T Consensus 171 ~~~~ 174 (189)
T cd04134 171 RVAL 174 (189)
T ss_pred HHHh
Confidence 8874
No 50
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=233.82 Aligned_cols=173 Identities=46% Similarity=0.839 Sum_probs=152.7
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA 80 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A 80 (730)
|+ +++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+++|||+|++.+..++..+++++
T Consensus 1 ~~-~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~a 79 (210)
T PLN03108 1 MS-YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGA 79 (210)
T ss_pred CC-CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 44 56789999999999999999999999999888889999999888899999899999999999999999999999999
Q ss_pred cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
|++|+|||++++.||+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 80 d~~vlv~D~~~~~s~~~l~~~~~~~~~~~-------------------------------~~~~piiiv~nK~Dl~~--- 125 (210)
T PLN03108 80 AGALLVYDITRRETFNHLASWLEDARQHA-------------------------------NANMTIMLIGNKCDLAH--- 125 (210)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccCcc---
Confidence 99999999999999999999998875532 14677888888888742
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee 240 (730)
.+.++.++++++++.++++|+++||++|.||++
T Consensus 126 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 126 -----------------------------------------------RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred -----------------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 246778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17467 241 LFMQIAAELMEKLAE 255 (730)
Q Consensus 241 LFe~Li~~l~e~~~~ 255 (730)
+|+++++.+......
T Consensus 159 ~f~~l~~~~~~~~~~ 173 (210)
T PLN03108 159 AFIKTAAKIYKKIQD 173 (210)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999988765543
No 51
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=6.3e-27 Score=225.72 Aligned_cols=170 Identities=28% Similarity=0.553 Sum_probs=143.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeec
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDI 89 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDv 89 (730)
|+|+|++|||||||+++|.++.+...+.|+.+.. +...+.+++..+.+++|||+|++++..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 6899999999999999999999988888888744 456778889899999999999999999999999999999999999
Q ss_pred CCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467 90 SCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168 (730)
Q Consensus 90 td~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~ 168 (730)
++++||+++. .|+..+.... ++.|+++||||+|+.++.....
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~----- 122 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC--------------------------------PNTPIILVGTKLDLREDKSTLR----- 122 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEecChhhhhChhhhh-----
Confidence 9999999996 5998886532 5789999999999975322110
Q ss_pred hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHHHH
Q psy17467 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.......+.++.+++.++++.+++ .|+||||++|.||+++|+.+++
T Consensus 123 ---------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 123 ---------------------------------ELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred ---------------------------------hhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 011112356888999999999997 8999999999999999999998
Q ss_pred HHH
Q psy17467 248 ELM 250 (730)
Q Consensus 248 ~l~ 250 (730)
.+.
T Consensus 170 ~~~ 172 (174)
T smart00174 170 AAL 172 (174)
T ss_pred Hhc
Confidence 763
No 52
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=6.7e-27 Score=231.50 Aligned_cols=166 Identities=29% Similarity=0.475 Sum_probs=142.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
||+|+|++|||||||+++|.++.|...+.|+++.. +...+.+++..+.+++|||+|++++..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 68999999999999999999999988888888744 45567788888999999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~ 168 (730)
++++.||+.+..|+..+..... ...++.|+++||||+|+.+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~----------------------------~~~~~~piilvgNK~Dl~~----------- 120 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKD----------------------------ESAADVPIMIVGNKCDKVY----------- 120 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc----------------------------ccCCCCCEEEEEEChhccc-----------
Confidence 9999999999999998865431 0125678888888888842
Q ss_pred hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
.+.++.+++.++++.+++.|++|||++|.||+++|+++++.
T Consensus 121 ---------------------------------------~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 121 ---------------------------------------EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred ---------------------------------------cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 24567778888999999999999999999999999999988
Q ss_pred HHHHH
Q psy17467 249 LMEKL 253 (730)
Q Consensus 249 l~e~~ 253 (730)
+.+..
T Consensus 162 l~~~~ 166 (190)
T cd04144 162 LRQQR 166 (190)
T ss_pred HHHhh
Confidence 75433
No 53
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=1.1e-26 Score=220.71 Aligned_cols=158 Identities=38% Similarity=0.667 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC--CeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN--NERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd--g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
+||+++|++|||||||+++++++.+...+.|+++.++....+.++ +..+.+++|||||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988888999988877777777 778999999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||+++++||+.+..|+..+.... ++.|+++|+||.|+..
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--------------------------------~~~p~iiv~nK~Dl~~-------- 120 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--------------------------------GDIPMVLVQTKIDLLD-------- 120 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhccc--------
Confidence 999999999999999999886432 4678888888888852
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
++.++.+++..+++.++++++++||++|.|++++|++|
T Consensus 121 ------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 121 ------------------------------------------QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred ------------------------------------------ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 23567788999999999999999999999999999998
Q ss_pred HH
Q psy17467 246 AA 247 (730)
Q Consensus 246 i~ 247 (730)
..
T Consensus 159 ~~ 160 (162)
T cd04106 159 AE 160 (162)
T ss_pred HH
Confidence 65
No 54
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=2.1e-26 Score=222.53 Aligned_cols=166 Identities=47% Similarity=0.847 Sum_probs=148.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
|++++||+|+|++|||||||+++++++.+...+.++.|.++....+.+++..+.+.+||++|++++..+...+++++|++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 56789999999999999999999999999888889999888888899999889999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.||+++..|+.++.+.. .++.|+++||||.|+.+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~pvivv~nK~Dl~~------ 123 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHS-------------------------------NSNMTIMLIGNKCDLES------ 123 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCcEEEEEECccccc------
Confidence 99999999999999999999987643 15678888889988852
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+.++.++++.++...++.++|+||++|.||+++|.
T Consensus 124 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 124 --------------------------------------------RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred --------------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 134667888889999999999999999999999999
Q ss_pred HHHHHHH
Q psy17467 244 QIAAELM 250 (730)
Q Consensus 244 ~Li~~l~ 250 (730)
.+++.+.
T Consensus 160 ~~~~~~~ 166 (168)
T cd01866 160 NTAKEIY 166 (168)
T ss_pred HHHHHHH
Confidence 9998774
No 55
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=9.2e-27 Score=222.29 Aligned_cols=161 Identities=32% Similarity=0.541 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||++++.++.+...+.||.+ +++...+.+++..+.++||||+|++++..++..+++++|++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999999888888876 666778888998899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.||+++..|+..+.+.. ...+.|+++||||+|+.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piviv~nK~Dl~~---------- 120 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVK------------------------------GYEKVPIILVGNKVDLES---------- 120 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccchh----------
Confidence 9999999999999999886542 115678888899998842
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
++.+..+++..+++..++++++|||++|.||+++|+++++
T Consensus 121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 121 ----------------------------------------EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ----------------------------------------cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 1345566788888888999999999999999999999986
Q ss_pred HH
Q psy17467 248 EL 249 (730)
Q Consensus 248 ~l 249 (730)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=1.6e-26 Score=225.52 Aligned_cols=164 Identities=35% Similarity=0.613 Sum_probs=143.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
||+++|++|||||||+++|.++.|...|.||++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999989888888999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~ 168 (730)
+++++||+.+..|++++.+... ....|+++||||+|+.+..
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~~~iilVgnK~Dl~~~~--------- 122 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKEND------------------------------PSSVLLFLVGTKKDLSSPA--------- 122 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcC------------------------------CCCCeEEEEEEChhcCccc---------
Confidence 9999999999999999865431 1245778888999985310
Q ss_pred hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
...+..+++..+++.++++|++|||++|.||+++|+.+++.
T Consensus 123 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~ 163 (170)
T cd04108 123 ---------------------------------------QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAAL 163 (170)
T ss_pred ---------------------------------------cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 11345677888888899999999999999999999999987
Q ss_pred HH
Q psy17467 249 LM 250 (730)
Q Consensus 249 l~ 250 (730)
+.
T Consensus 164 ~~ 165 (170)
T cd04108 164 TF 165 (170)
T ss_pred HH
Confidence 74
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.6e-26 Score=221.73 Aligned_cols=163 Identities=52% Similarity=0.896 Sum_probs=143.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+++|||||++.+...+..+++++|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 35799999999999999999999999998888899988888888999998889999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.||+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~p~ivv~nK~Dl~~------- 122 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYG-------------------------------ASNVVLLLIGNKCDLEE------- 122 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhC-------------------------------CCCCcEEEEEECccccc-------
Confidence 9999999999999999999986542 14677888888888852
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM 243 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe 243 (730)
.+.+..+++..+++..++ .++||||++|.|++++|+
T Consensus 123 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 123 -------------------------------------------QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred -------------------------------------------ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 234567788899998886 689999999999999999
Q ss_pred HHHHH
Q psy17467 244 QIAAE 248 (730)
Q Consensus 244 ~Li~~ 248 (730)
.+.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99864
No 58
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=6.3e-27 Score=234.85 Aligned_cols=177 Identities=23% Similarity=0.334 Sum_probs=133.7
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHcC-----CCCCCCCCccee-eEEEEE--------EEeCCeEEEEEEEeCCCchhhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVR-RFTQG-----VFPPGQGATIGV-DFMIKT--------VEINNERIKLQIWDTAGQERFRS 71 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLn-rLl~~-----~f~~~~~pTig~-d~~~~~--------i~vdg~~v~LqLwDTpG~e~~~s 71 (730)
.+||+++|++|||||||+. ++.++ .|...+.||++. +.+... +.+++..+.++||||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 66554 345677889863 333322 25788999999999999975 3
Q ss_pred hhHhhhccccEEEEEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467 72 ITQSYYRSAHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS 150 (730)
Q Consensus 72 l~~~~~r~ADaIILVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG 150 (730)
+...++++||++|+|||++++.||+++. .|++++.... ++.|+++||
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--------------------------------~~~piilvg 127 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--------------------------------PRVPVILVG 127 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEE
Confidence 5567899999999999999999999997 5998886532 467889999
Q ss_pred cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEE
Q psy17467 151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLET 230 (730)
Q Consensus 151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEt 230 (730)
||.||.+..... ...... .+.+.. ...+.|+.++++++|+.+|++|+||
T Consensus 128 NK~DL~~~~~~~---------------------------~~~~~~---~~~~~~-~~~~~V~~~e~~~~a~~~~~~~~E~ 176 (195)
T cd01873 128 CKLDLRYADLDE---------------------------VNRARR---PLARPI-KNADILPPETGRAVAKELGIPYYET 176 (195)
T ss_pred Echhccccccch---------------------------hhhccc---cccccc-ccCCccCHHHHHHHHHHhCCEEEEc
Confidence 999996421000 000000 000111 0247899999999999999999999
Q ss_pred ecCCCCChHHHHHHHHHH
Q psy17467 231 SAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 231 SAktG~GVeeLFe~Li~~ 248 (730)
||++|.||+++|+.+++.
T Consensus 177 SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 177 SVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 999999999999999864
No 59
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=1.4e-26 Score=226.92 Aligned_cols=169 Identities=32% Similarity=0.587 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
+||+|+|++|||||||+++|.++.+...+.|+++.++. ..+... +..+.+++|||+|++++..++..++++||++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999999888899886654 345554 7788999999999999999999999999999999
Q ss_pred eecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 87 YDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 87 yDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
||++++.||+++. .|+..+.... ++.|+++||||+|+.+...
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~----- 122 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC--------------------------------PGTPIMLVGLKTDLRKDKN----- 122 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEeChhhhhCcc-----
Confidence 9999999999996 4888775432 5688999999999853210
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~ 244 (730)
..+.++.+++++++..+++ ++++|||++|.||+++|+.
T Consensus 123 -----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 161 (187)
T cd04132 123 -----------------------------------------LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDT 161 (187)
T ss_pred -----------------------------------------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHH
Confidence 1246778899999999998 8999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 245 IAAELMEKLAE 255 (730)
Q Consensus 245 Li~~l~e~~~~ 255 (730)
+++.+......
T Consensus 162 l~~~~~~~~~~ 172 (187)
T cd04132 162 AIEEALKKEGK 172 (187)
T ss_pred HHHHHHhhhhh
Confidence 99988655443
No 60
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=2.2e-26 Score=221.56 Aligned_cols=167 Identities=34% Similarity=0.617 Sum_probs=145.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
++..+||+++|++|||||||+++|+++.+...+.+++|.++....+.+++..+.+++||++|++++..++..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999999988889999888888889999999999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.||+.+..|+.++...... ....+.|+++||||+|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---------------------------~~~~~~piilv~nK~Dl~------- 127 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADV---------------------------KEPESFPFVVLGNKNDIP------- 127 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhccc---------------------------ccCCCCcEEEEEECcccc-------
Confidence 9999999999999999999988654310 011456777777777763
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF 242 (730)
.+.++.++++++++.+++ ++++|||++|.||+++|
T Consensus 128 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 128 --------------------------------------------ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF 163 (170)
T ss_pred --------------------------------------------ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence 346777889999999885 89999999999999999
Q ss_pred HHHHHH
Q psy17467 243 MQIAAE 248 (730)
Q Consensus 243 e~Li~~ 248 (730)
+.+++.
T Consensus 164 ~~~~~~ 169 (170)
T cd04116 164 EEAVRR 169 (170)
T ss_pred HHHHhh
Confidence 999865
No 61
>KOG0081|consensus
Probab=99.95 E-value=3.3e-28 Score=233.27 Aligned_cols=175 Identities=34% Similarity=0.635 Sum_probs=158.9
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC---------CeEEEEEEEeCCCchhhhhh
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN---------NERIKLQIWDTAGQERFRSI 72 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd---------g~~v~LqLwDTpG~e~~~sl 72 (730)
-+|+|+||.+.+|++||||||++.+|+.++|.....+|+|+++..+.+.++ +..+.+++|||+|+++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 478999999999999999999999999999999999999999999988884 45789999999999999999
Q ss_pred hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467 73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK 152 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK 152 (730)
...++++|-+++++||+|+..||.+++.|+.++..+. +.++.-||++|||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA------------------------------YcE~PDivlcGNK 133 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA------------------------------YCENPDIVLCGNK 133 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh------------------------------ccCCCCEEEEcCc
Confidence 9999999999999999999999999999999997654 3356667788888
Q ss_pred CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467 153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA 232 (730)
Q Consensus 153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA 232 (730)
+||.+ .|.|+++++.++|.++|++|+|+||
T Consensus 134 ~DL~~--------------------------------------------------~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 134 ADLED--------------------------------------------------QRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred cchhh--------------------------------------------------hhhhhHHHHHHHHHHhCCCeeeecc
Confidence 88853 4789999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH
Q psy17467 233 KASDNVEKLFMQIAAELMEKLAEK 256 (730)
Q Consensus 233 ktG~GVeeLFe~Li~~l~e~~~~~ 256 (730)
-+|.||++..+.++..++++..+-
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876653
No 62
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=2.2e-26 Score=219.21 Aligned_cols=160 Identities=43% Similarity=0.801 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+++||++|++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888899998888888899998899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.+|+.+..|++.+.... .++.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iivv~nK~D~~~---------- 119 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-------------------------------SPNIVVILVGNKSDLAD---------- 119 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEEchhcch----------
Confidence 9999999999999999886542 25678888899999852
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.++.+++..+++..++.++++||++|.|++++|+++++
T Consensus 120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 120 ----------------------------------------QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred ----------------------------------------hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 2356778899999999999999999999999999999987
Q ss_pred H
Q psy17467 248 E 248 (730)
Q Consensus 248 ~ 248 (730)
.
T Consensus 160 ~ 160 (161)
T cd04113 160 S 160 (161)
T ss_pred h
Confidence 5
No 63
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=3.1e-26 Score=220.16 Aligned_cols=160 Identities=34% Similarity=0.604 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|.++.+.+.+.++.+.+.....+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888888887777778888898999999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.+|+++..|+..+.+.. ++.|+++|+||+|+...
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~p~ivv~nK~Dl~~~--------- 119 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--------------------------------PEIPCIVVANKIDLDPS--------- 119 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCcEEEEEECccCchh---------
Confidence 9999999999999999986532 46788888999988421
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
..+++..+++..++++++|||++|.|++++|+.+++
T Consensus 120 --------------------------------------------~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 120 --------------------------------------------VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred --------------------------------------------HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 113455667777899999999999999999999998
Q ss_pred HHHHH
Q psy17467 248 ELMEK 252 (730)
Q Consensus 248 ~l~e~ 252 (730)
.+.++
T Consensus 156 ~~~~~ 160 (161)
T cd04124 156 LAVSY 160 (161)
T ss_pred HHHhc
Confidence 87553
No 64
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=4.9e-26 Score=224.17 Aligned_cols=165 Identities=45% Similarity=0.793 Sum_probs=146.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+|+|++|||||||+++|.++.|...+.++++.++....+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878899998888888889888899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.||+.+..|+.++..... .+.|+++||||+|+.+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~-------------------------------~~~~~ivv~nK~Dl~~---------- 119 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYAR-------------------------------ENVIKVIVANKSDLVN---------- 119 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-------------------------------CCCeEEEEEECCCCcc----------
Confidence 99999999999999999876431 3467788888888752
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.++.+++..+++..++++++|||++|.||+++|+++++
T Consensus 120 ----------------------------------------~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 120 ----------------------------------------NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred ----------------------------------------cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 2456778888999999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 248 ELMEKL 253 (730)
Q Consensus 248 ~l~e~~ 253 (730)
.+..+.
T Consensus 160 ~~~~~~ 165 (188)
T cd04125 160 LIIKRL 165 (188)
T ss_pred HHHHHh
Confidence 986543
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.94 E-value=3.2e-26 Score=220.31 Aligned_cols=161 Identities=29% Similarity=0.456 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++++++.|...+.|+.+.. +...+..++..+.+++|||+|++++..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 799999999999999999999999988888888743 3556677788899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|+++++||+.+..|++.+..... ...++.|+++||||.|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~----------------------------~~~~~~piilv~nK~Dl~~---------- 122 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKG----------------------------NNIEKIPIMLVGNKCDESH---------- 122 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhc----------------------------CCCCCCCEEEEEECccccc----------
Confidence 99999999999999988865431 0125678888888888742
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.+..+++..++...++.|+||||++|.||+++|++|++
T Consensus 123 ----------------------------------------~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 123 ----------------------------------------KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred ----------------------------------------cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 2456677888899989999999999999999999999875
No 66
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=3.9e-26 Score=225.10 Aligned_cols=167 Identities=33% Similarity=0.582 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
+||+|+|++|||||||+++|+++.+.. .+.+|++.++....+.+++..+.+++||++|++++..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999875 5788998888888899999999999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.||+++..|++.+.... ++.|+++|+||+|+.+...
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~~~~------ 122 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE--------------------------------EHCKIYLCGTKSDLIEQDR------ 122 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC--------------------------------CCCCEEEEEEccccccccc------
Confidence 99999999999999999886432 4678999999999853110
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
..+.+..+++.+++...+++++++||++|.||+++|+.++
T Consensus 123 ----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 162 (193)
T cd04118 123 ----------------------------------------SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162 (193)
T ss_pred ----------------------------------------ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 1245667788889999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 247 AELMEK 252 (730)
Q Consensus 247 ~~l~e~ 252 (730)
+.+.+.
T Consensus 163 ~~~~~~ 168 (193)
T cd04118 163 EDFVSR 168 (193)
T ss_pred HHHHHh
Confidence 988643
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.94 E-value=4.5e-26 Score=214.98 Aligned_cols=160 Identities=31% Similarity=0.515 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|+++.+...+.|+.+. .+...+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 79999999999999999999999998888888874 44667788888889999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.+|+++..|+..+.+.. ..++.|+++|+||+|+.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piivv~nK~Dl~~---------- 120 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVK------------------------------DSDDVPMVLVGNKCDLAA---------- 120 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccccc----------
Confidence 9999999999999999886543 124667788888888742
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
+.+..+++.++++..++++++|||++|.||+++|+++++
T Consensus 121 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 121 -----------------------------------------RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred -----------------------------------------ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 345667788888889999999999999999999999986
Q ss_pred HH
Q psy17467 248 EL 249 (730)
Q Consensus 248 ~l 249 (730)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 68
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.94 E-value=4.1e-26 Score=217.65 Aligned_cols=162 Identities=34% Similarity=0.573 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+|+|++|||||||+++++++.+...+.|+.+ +.+...+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999999888888876 555677788888899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++++|+.+..|+..+.+... ..+.|+++||||+|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~pii~v~nK~Dl~~---------- 119 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKD------------------------------RDDVPIVLVGNKCDLES---------- 119 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEEECccccc----------
Confidence 99999999999999988765421 13578888888888752
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.++.+++..+++..+++|++|||++|.|++++|+++++
T Consensus 120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 120 ----------------------------------------ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ----------------------------------------cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 1345667888889989999999999999999999999998
Q ss_pred HHH
Q psy17467 248 ELM 250 (730)
Q Consensus 248 ~l~ 250 (730)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 763
No 69
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=5.9e-26 Score=219.83 Aligned_cols=163 Identities=48% Similarity=0.867 Sum_probs=144.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-hhhHhhhccccEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-SITQSYYRSAHALIL 85 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-sl~~~~~r~ADaIIL 85 (730)
.+||+++|++|||||||+++++++.+...+.++++.++..+.+.+++..+.+++|||+|++++. .++..+++++|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999988888999988888889999999999999999999886 578889999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.||+.+..|+..+.... ...+.|+++|+||+|+..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~iiv~nK~Dl~~-------- 123 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHS------------------------------LPNEVPRILVGNKCDLRE-------- 123 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccchh--------
Confidence 999999999999999999987643 125678888889988852
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC---CCChHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA---SDNVEKLF 242 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt---G~GVeeLF 242 (730)
.++++.++++++++..+++|+||||++ +.||+++|
T Consensus 124 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 124 ------------------------------------------QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred ------------------------------------------hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 246778889999999999999999999 89999999
Q ss_pred HHHHHHH
Q psy17467 243 MQIAAEL 249 (730)
Q Consensus 243 e~Li~~l 249 (730)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.94 E-value=5.8e-26 Score=215.87 Aligned_cols=162 Identities=31% Similarity=0.541 Sum_probs=139.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++++++.+...+.++.+ +.......+++..+.+++|||||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999988877878877 44456677888889999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.+|+.+..|+..+.+.. ...+.|+++++||+|+..
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piiiv~NK~Dl~~--------- 121 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVK------------------------------DRDEFPMILVGNKADLEH--------- 121 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh------------------------------CCCCCCEEEEeeCccccc---------
Confidence 99999999999999999886542 124678888888888852
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.+++.++++..++++++|||++|.||+++|+.++
T Consensus 122 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 122 -----------------------------------------QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred -----------------------------------------cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 134566778889999999999999999999999999998
Q ss_pred HHH
Q psy17467 247 AEL 249 (730)
Q Consensus 247 ~~l 249 (730)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 71
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=4.3e-26 Score=221.41 Aligned_cols=169 Identities=25% Similarity=0.446 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+.++.++.|...+.||.. +.+...+.+++..+.+++|||+|++++..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 6899999999999999999999999888888774 666677888988899999999999999999999999999999999
Q ss_pred ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
|++++.||+.+. .|+..+.... ++.|+++||||+|+.+.....
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~---- 123 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN--------------------------------PKAPIILVGTQADLRTDVNVL---- 123 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEeeChhhccChhHH----
Confidence 999999999985 6888876421 467899999999996432210
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L 245 (730)
.+......+.+..++++.+++..++ .|+||||++|.||+++|+.+
T Consensus 124 ----------------------------------~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 124 ----------------------------------IQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred ----------------------------------HHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 1111223478889999999999998 89999999999999999988
Q ss_pred HH
Q psy17467 246 AA 247 (730)
Q Consensus 246 i~ 247 (730)
+-
T Consensus 170 ~~ 171 (173)
T cd04130 170 IL 171 (173)
T ss_pred Hh
Confidence 64
No 72
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.94 E-value=2.8e-26 Score=221.86 Aligned_cols=156 Identities=23% Similarity=0.381 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+.+|+++.|...+.|+.+ .+ ...+.+++..+.+++|||+|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999999998877655533 44 57788999999999999999974 35678999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++|+.||+++..|++++..... .++.|+++||||.|+...
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~------------------------------~~~~piilvgnK~Dl~~~--------- 114 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRN------------------------------ISEIPLILVGTQDAISES--------- 114 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEeeHHHhhhc---------
Confidence 99999999999999999876431 256788888998887420
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeLFe~Li 246 (730)
..+.++.++++++++.. ++.|+||||++|.||+++|+.++
T Consensus 115 ---------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 115 ---------------------------------------NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAA 155 (158)
T ss_pred ---------------------------------------CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHH
Confidence 23578889999999877 58999999999999999999998
Q ss_pred HH
Q psy17467 247 AE 248 (730)
Q Consensus 247 ~~ 248 (730)
+.
T Consensus 156 ~~ 157 (158)
T cd04103 156 QK 157 (158)
T ss_pred hh
Confidence 54
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=4.7e-26 Score=229.81 Aligned_cols=155 Identities=30% Similarity=0.607 Sum_probs=137.3
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467 13 VGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 13 LG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~ 92 (730)
||++|||||||+++|+++.|...+.||+|.++....+.+++..+.++||||+|++++..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899999999888899999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhh
Q psy17467 93 PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAV 172 (730)
Q Consensus 93 eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~ 172 (730)
.||+.+..|++++.+.. +++|++|||||+|+..
T Consensus 81 ~S~~~i~~w~~~i~~~~--------------------------------~~~piilvgNK~Dl~~--------------- 113 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--------------------------------ENIPIVLCGNKVDVKD--------------- 113 (200)
T ss_pred HHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECccccc---------------
Confidence 99999999999997643 4678888888888742
Q ss_pred cccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467 173 CIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251 (730)
Q Consensus 173 ~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e 251 (730)
+.+..+. ..+++..++.|+||||++|.||+++|+++++.+.+
T Consensus 114 ------------------------------------~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 114 ------------------------------------RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred ------------------------------------ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2344333 46788889999999999999999999999988743
No 74
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=8.4e-26 Score=223.86 Aligned_cols=164 Identities=49% Similarity=0.824 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
+||+++|++|||||||+++|.++.+.. .+.++++.++....+.+++..+.++||||||++++..++..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999999864 5778888888777888999999999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.||+++..|+..+..... .+.|+++||||+|+..
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piiiv~NK~Dl~~--------- 120 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQ-------------------------------EDVVIMLLGNKADMSG--------- 120 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCC-------------------------------CCCcEEEEEEcccchh---------
Confidence 999999999999999999876431 3567888888888742
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.+..++++.+++.++++|+||||++|.||+++|++|+
T Consensus 121 -----------------------------------------~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 121 -----------------------------------------ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred -----------------------------------------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 245667888999999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 247 AELMEK 252 (730)
Q Consensus 247 ~~l~e~ 252 (730)
+.+...
T Consensus 160 ~~~~~~ 165 (191)
T cd04112 160 KELKHR 165 (191)
T ss_pred HHHHHh
Confidence 888544
No 75
>KOG0097|consensus
Probab=99.94 E-value=4.2e-26 Score=215.23 Aligned_cols=173 Identities=39% Similarity=0.794 Sum_probs=158.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+|.+.+|-+|+|+-|||||+|+.+|+..+|...-..|+|+++..+.+++.|+.+++++|||+|+++|+.+.+.||+.|-+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45688999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
.++|||++.+.++..+..|+.+.+.. .+|+..++++|||.||.
T Consensus 87 almvyditrrstynhlsswl~dar~l-------------------------------tnpnt~i~lignkadle------ 129 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNL-------------------------------TNPNTVIFLIGNKADLE------ 129 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhcc-------------------------------CCCceEEEEecchhhhh------
Confidence 99999999999999999999997653 35888888889988885
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+|.|+.+++.+++++.|..|+|+|||+|.||++.|
T Consensus 130 --------------------------------------------~qrdv~yeeak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 130 --------------------------------------------SQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred --------------------------------------------hcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence 347899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy17467 243 MQIAAELMEKLAEK 256 (730)
Q Consensus 243 e~Li~~l~e~~~~~ 256 (730)
-...+.+.+.....
T Consensus 166 le~akkiyqniqdg 179 (215)
T KOG0097|consen 166 LETAKKIYQNIQDG 179 (215)
T ss_pred HHHHHHHHHhhhcC
Confidence 99988887665553
No 76
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.94 E-value=8e-26 Score=218.03 Aligned_cols=171 Identities=26% Similarity=0.521 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|.++.+...+.|+.+ +.+...+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999999888888876 455567788888899999999999999999999999999999999
Q ss_pred ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
|++++.||+++. .|++.+... .++.|+++||||+|+.+......
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~--------------------------------~~~~piivv~nK~Dl~~~~~~~~--- 124 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY--------------------------------APNVPYLLVGTQIDLRDDPKTLA--- 124 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--------------------------------CCCCCEEEEeEchhhhcChhhHH---
Confidence 999999999996 588777543 26789999999999864321100
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L 245 (730)
+......+.++.+++..+++..|+ .|+||||++|.||+++|+.+
T Consensus 125 -----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 125 -----------------------------------RLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred -----------------------------------HHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHH
Confidence 011123467888999999999997 79999999999999999999
Q ss_pred HHHH
Q psy17467 246 AAEL 249 (730)
Q Consensus 246 i~~l 249 (730)
++.+
T Consensus 170 ~~~~ 173 (174)
T cd04135 170 ILAI 173 (174)
T ss_pred HHHh
Confidence 8865
No 77
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=2.9e-26 Score=254.72 Aligned_cols=247 Identities=17% Similarity=0.101 Sum_probs=184.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----------hh-
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----------IT- 73 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----------l~- 73 (730)
..++|+++|.+|||||||++++++... .....+..+.+.....+..++ ..+.+|||||..+... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 458999999999999999999997653 334445555555555555666 5578999999643221 11
Q ss_pred HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
..+++.+|++|+|+|++++.+.++.. ++..+. ..+.|+++|+||+
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~----------------------------------~~~~~~ivv~NK~ 294 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLAL----------------------------------EAGRALVIVVNKW 294 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH----------------------------------HcCCcEEEEEECc
Confidence 24678999999999999988776653 222221 1357889999999
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK 233 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk 233 (730)
|+.+.+.. ..+..+....+.....++++++||+
T Consensus 295 Dl~~~~~~-----------------------------------------------~~~~~~~~~~l~~~~~~~i~~~SA~ 327 (435)
T PRK00093 295 DLVDEKTM-----------------------------------------------EEFKKELRRRLPFLDYAPIVFISAL 327 (435)
T ss_pred cCCCHHHH-----------------------------------------------HHHHHHHHHhcccccCCCEEEEeCC
Confidence 98632210 0011111222333335789999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeeec
Q psy17467 234 ASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVS 313 (730)
Q Consensus 234 tG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~ 313 (730)
+|.||+++|+.+.+....+..+.++...+++...+ ...++||...++..+..|++|.+..||.|+.+++
T Consensus 328 ~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~-----------~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n 396 (435)
T PRK00093 328 TGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEA-----------VERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVN 396 (435)
T ss_pred CCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHH-----------HHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeC
Confidence 99999999999998887776666666555555544 3345677778888999999999999999999999
Q ss_pred cccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467 314 GISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG 347 (730)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (730)
..+.++.+|.|||.+.+|+.|++.|+|+++.++.
T Consensus 397 ~~~~~~~~y~~~l~~~~r~~~~~~g~p~~~~~~~ 430 (435)
T PRK00093 397 DPELLPFSYKRYLENQLREAFDFEGTPIRLEFRE 430 (435)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCcccEEEEEec
Confidence 9999999999999999999999999999999986
No 78
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.94 E-value=1.5e-25 Score=217.32 Aligned_cols=159 Identities=32% Similarity=0.636 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++++++.+...+.||++.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888899998888888888888999999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|+++++||+.+..|+.++.+.. .+.|+++||||+|+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~piiiv~nK~Dl~~---------- 118 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--------------------------------GNIPIVLCGNKVDIKD---------- 118 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCcEEEEEEchhccc----------
Confidence 9999999999999999987653 2678888888888852
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
+.+. .++.++++..++.++||||++|.||+++|+++++
T Consensus 119 -----------------------------------------~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 119 -----------------------------------------RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred -----------------------------------------ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 1222 2345677777889999999999999999999998
Q ss_pred HHH
Q psy17467 248 ELM 250 (730)
Q Consensus 248 ~l~ 250 (730)
.+.
T Consensus 157 ~~~ 159 (166)
T cd00877 157 KLL 159 (166)
T ss_pred HHH
Confidence 874
No 79
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=1.6e-25 Score=229.32 Aligned_cols=182 Identities=31% Similarity=0.493 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+|+|++|||||||+++|+++.|.. +.||++.++....+ ..+.+.||||+|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 56888876654433 4588999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|+++++||+++..|+..+.+.. .++.|++|||||+|+.++...
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~-------------------------------~~~~piIlVgNK~DL~~~~~~------ 118 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTA-------------------------------NEDCLFAVVGNKLDLTEEGAL------ 118 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccccccccc------
Confidence 9999999999998888775432 256789999999999752210
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--------------CeEEEEecC
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--------------MYYLETSAK 233 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--------------~~fvEtSAk 233 (730)
+++...+.-.+.| ...+.++.++++.+|+..+ ++|+||||+
T Consensus 119 ----------------------~~~~~~~~~~~~~---~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~ 173 (220)
T cd04126 119 ----------------------AGQEKDAGDRVSP---EDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAK 173 (220)
T ss_pred ----------------------ccccccccccccc---cccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCC
Confidence 0000000000111 1247899999999999887 689999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH
Q psy17467 234 ASDNVEKLFMQIAAELMEKLAEK 256 (730)
Q Consensus 234 tG~GVeeLFe~Li~~l~e~~~~~ 256 (730)
+|.||+++|..+++.+.....+.
T Consensus 174 tg~~V~elf~~i~~~~~~~~~~~ 196 (220)
T cd04126 174 TGYNVDELFEYLFNLVLPLILAQ 196 (220)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999887655444
No 80
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=2e-25 Score=212.86 Aligned_cols=160 Identities=29% Similarity=0.584 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG--VFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~--~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+||+++|++|||||||++++.++ .+...+.++.|.++....+.++ +..+.+.+|||+|++.+..++..+++++|++|
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6888888999988877777775 56799999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++++|+.+..|++.+.... ++.|+++||||+|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~------- 121 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--------------------------------KHMPGVLVGNKMDLAD------- 121 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECccccc-------
Confidence 9999999999999999999886532 4578888888888742
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+.+..++++.++...++++++|||++|.||+++|+.
T Consensus 122 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (164)
T cd04101 122 -------------------------------------------KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES 158 (164)
T ss_pred -------------------------------------------ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence 2345666777888888999999999999999999999
Q ss_pred HHHHH
Q psy17467 245 IAAEL 249 (730)
Q Consensus 245 Li~~l 249 (730)
+++.+
T Consensus 159 l~~~~ 163 (164)
T cd04101 159 LARAF 163 (164)
T ss_pred HHHHh
Confidence 98764
No 81
>KOG0393|consensus
Probab=99.94 E-value=1.4e-26 Score=232.14 Aligned_cols=175 Identities=28% Similarity=0.490 Sum_probs=154.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
..+|++|||+.+||||+|+..|+.+.|+..|.||+- +-+...+.++ |+.+.+.+|||+|+++|+.++...|.++|+|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 458999999999999999999999999999999997 7788899995 99999999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 85 LVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
+||++.+++||+++.+ |+.++.+++ |+.|++|||+|.||+++.....
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c--------------------------------p~vpiiLVGtk~DLr~d~~~~~ 129 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC--------------------------------PNVPIILVGTKADLRDDPSTLE 129 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC--------------------------------CCCCEEEEeehHHhhhCHHHHH
Confidence 9999999999999865 999998876 8899999999999996543322
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF 242 (730)
.+.- + ....|+.++++.+|+.+|+ .|+||||++..|+.++|
T Consensus 130 ~l~~----------------------------------~----~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF 171 (198)
T KOG0393|consen 130 KLQR----------------------------------Q----GLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVF 171 (198)
T ss_pred HHHh----------------------------------c----cCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHH
Confidence 1110 1 2347899999999999995 79999999999999999
Q ss_pred HHHHHHHHH
Q psy17467 243 MQIAAELME 251 (730)
Q Consensus 243 e~Li~~l~e 251 (730)
+.+++..+.
T Consensus 172 ~~a~~~~l~ 180 (198)
T KOG0393|consen 172 DEAIRAALR 180 (198)
T ss_pred HHHHHHHhc
Confidence 999988854
No 82
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=1.1e-25 Score=226.06 Aligned_cols=166 Identities=25% Similarity=0.326 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh--------hhHhhhcc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS--------ITQSYYRS 79 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s--------l~~~~~r~ 79 (730)
+||+|+|++|||||||+++|+++.|...+.|+++.+.+...+.+++..+.+++|||+|...+.. ....++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888889998777777888899999999999999654321 13345789
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e 159 (730)
||++|+|||++++.||+.+..|++.+.+... ...++.|+++||||+|+.+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~----------------------------~~~~~~piiivgNK~Dl~~-- 130 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRP----------------------------AGNKEPPIVVVGNKRDQQR-- 130 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcc----------------------------cCCCCCCEEEEEECccccc--
Confidence 9999999999999999999999998876431 0135678888899999852
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCCh
Q psy17467 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNV 238 (730)
Q Consensus 160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GV 238 (730)
.+.++.++++.++. .++++|+||||++|.||
T Consensus 131 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v 162 (198)
T cd04142 131 ------------------------------------------------HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHI 162 (198)
T ss_pred ------------------------------------------------cccccHHHHHHHHHHhcCCcEEEecCCCCCCH
Confidence 13456667777754 56899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 239 EKLFMQIAAELME 251 (730)
Q Consensus 239 eeLFe~Li~~l~e 251 (730)
+++|+.+++.+..
T Consensus 163 ~~lf~~i~~~~~~ 175 (198)
T cd04142 163 LLLFKELLISATT 175 (198)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987753
No 83
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=3.6e-25 Score=210.05 Aligned_cols=163 Identities=50% Similarity=0.905 Sum_probs=144.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||++++++..+...+.++++.++....+.+++..+.+++||++|++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 68999999999999999999999998888899998888888999998899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.+++.+..|+..+..+.. ++.|+++++||+|+..
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-------------------------------~~~pivvv~nK~D~~~---------- 119 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-------------------------------PNVVIMLVGNKSDLED---------- 119 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-------------------------------CCCeEEEEEEchhccc----------
Confidence 99999999999999999876531 4678888888888742
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.+..++++++++..++.++|+||++|.|++++|+.+++
T Consensus 120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 120 ----------------------------------------QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ----------------------------------------ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 1355677888899999999999999999999999999998
Q ss_pred HHHH
Q psy17467 248 ELME 251 (730)
Q Consensus 248 ~l~e 251 (730)
.+.+
T Consensus 160 ~~~~ 163 (164)
T smart00175 160 EILK 163 (164)
T ss_pred HHhh
Confidence 8743
No 84
>KOG0088|consensus
Probab=99.93 E-value=1.5e-26 Score=221.77 Aligned_cols=171 Identities=34% Similarity=0.625 Sum_probs=153.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
+.+.+||+++|...||||||+-||..++|...+.+|+...+..+.+.+.+....+.||||+|+++|..+.+-||++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
+||||+||+.||+.++.|..+++.... ..+.+++||||.||.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlG-------------------------------nei~l~IVGNKiDLE------- 131 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLG-------------------------------NEIELLIVGNKIDLE------- 131 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhC-------------------------------CeeEEEEecCcccHH-------
Confidence 999999999999999999999988653 223445566666664
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+|+|+.++++.+|+..|+.|+|+||+.+.||.++|+
T Consensus 132 -------------------------------------------eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 132 -------------------------------------------EERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred -------------------------------------------HhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 2488999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 244 QIAAELMEKLAE 255 (730)
Q Consensus 244 ~Li~~l~e~~~~ 255 (730)
.+....++....
T Consensus 169 ~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 169 SLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHhhh
Confidence 999888765443
No 85
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.93 E-value=3.6e-26 Score=269.21 Aligned_cols=244 Identities=18% Similarity=0.096 Sum_probs=185.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----------hhhhh-
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----------FRSIT- 73 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----------~~sl~- 73 (730)
..+||+++|.+|||||||+|++++..+. ....+.++.+.....+.+++. .+.+|||||..+ +..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 3489999999999999999999998753 344465666777777778875 467999999532 22222
Q ss_pred HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
..+++.||++|+|+|+++..+++++. ++..+.. .+.|+++|+||+
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----------------------------------~~~piIiV~NK~ 571 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD----------------------------------AGRALVLVFNKW 571 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----------------------------------cCCCEEEEEEch
Confidence 24578999999999999998888765 3333221 357899999999
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH-HHHhcCCeEEEEec
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED-FAKRHDMYYLETSA 232 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~-lak~lg~~fvEtSA 232 (730)
|+.+.... ..-..+... +.....++++++||
T Consensus 572 DL~~~~~~------------------------------------------------~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 572 DLMDEFRR------------------------------------------------QRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred hcCChhHH------------------------------------------------HHHHHHHHHhccCCCCCCEEEEEC
Confidence 98642110 000011111 11112356799999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeee
Q psy17467 233 KASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSV 312 (730)
Q Consensus 233 ktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~ 312 (730)
++|.||+++|+.+.+.+.++..+..+...+++.+.+ ...++||...+++.+..|++|.+..||.|+.++
T Consensus 604 ktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~-----------~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~ 672 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKI-----------QAEHPHPLRGGKQPRILFATQASTRPPRFVIFT 672 (712)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHH-----------HhhCCCCccCCeeeeEEEEECCCCCCCEEEEEc
Confidence 999999999999999988777777777777766655 245677778889999999999999999999996
Q ss_pred ccccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467 313 SGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG 347 (730)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (730)
+ +.++.+|.|||.|.+|+.|++-|+|+++.++.
T Consensus 673 ~--~~~~~~y~r~l~~~~r~~~~~~g~pi~~~~~~ 705 (712)
T PRK09518 673 T--GFLEHGYRRFLERSLREEFGFEGSPIQISVNI 705 (712)
T ss_pred C--CCCChHHHHHHHHHHHHHcCCccceEEEEEEe
Confidence 5 78999999999999999999999999999987
No 86
>KOG0083|consensus
Probab=99.93 E-value=4.5e-27 Score=219.99 Aligned_cols=157 Identities=45% Similarity=0.770 Sum_probs=140.4
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC
Q psy17467 12 LVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS 90 (730)
Q Consensus 12 VLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt 90 (730)
++|++++|||+|+-||..+-|.. ...+|+|+++..+.+.+++..+++++|||+|+++|+++...||++||+.+++||++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999999888754 46799999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhh
Q psy17467 91 CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFV 170 (730)
Q Consensus 91 d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~ 170 (730)
|+.||++++.|+.+|..+.+.. ..+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~-------------------------------v~l------------------------ 106 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEA-------------------------------VAL------------------------ 106 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhh-------------------------------HhH------------------------
Confidence 9999999999999998876321 222
Q ss_pred hhcccccccchhhhhhhcccCCcCCcccccccccccc-CCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 171 AVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRE-DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 171 a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~-~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
+++|||+|+. +|.|..++++++|+.+|++|+|+|||||.||+..|-.|.+.+
T Consensus 107 ---------------------------~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 107 ---------------------------MLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred ---------------------------hhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 3445666663 589999999999999999999999999999999999999887
Q ss_pred H
Q psy17467 250 M 250 (730)
Q Consensus 250 ~ 250 (730)
.
T Consensus 160 ~ 160 (192)
T KOG0083|consen 160 K 160 (192)
T ss_pred H
Confidence 4
No 87
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.93 E-value=5e-25 Score=209.18 Aligned_cols=160 Identities=41% Similarity=0.722 Sum_probs=142.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++++++.+...+.|+.+.++....+.+++..+.+++|||||+..+..++..+++++|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888899999999999999988889999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|+++++||+.+..|++.+..... .+.|+++++||+|+.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~~iilv~nK~D~~~---------- 119 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-------------------------------NDVIIVLVGNKTDLSD---------- 119 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-------------------------------CCCEEEEEEEChhccc----------
Confidence 99999999999999999865431 2577888888888741
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.+..++...+++..++.++++||++|.|++++|+++.+
T Consensus 120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 120 ----------------------------------------KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred ----------------------------------------cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 2456778888888888999999999999999999999986
Q ss_pred H
Q psy17467 248 E 248 (730)
Q Consensus 248 ~ 248 (730)
.
T Consensus 160 ~ 160 (161)
T cd01861 160 A 160 (161)
T ss_pred h
Confidence 4
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=5.4e-25 Score=209.31 Aligned_cols=160 Identities=46% Similarity=0.868 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|+++.+...+.|+.+.++....+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999999988878899998888888888888899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.||+.+..|+..+..+. ..++.|+++||||+|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~~~~iv~nK~D~~----------- 119 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYS------------------------------TNNDIVKMLVGNKIDKE----------- 119 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhC------------------------------CCCCCcEEEEEECCccc-----------
Confidence 9999999999999999987653 13567788888888874
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.+..++..++++..+++++++||++|.|++++|+.+++
T Consensus 120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 120 ----------------------------------------NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ----------------------------------------ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 2345567888899999999999999999999999999886
Q ss_pred H
Q psy17467 248 E 248 (730)
Q Consensus 248 ~ 248 (730)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 4
No 89
>PLN03118 Rab family protein; Provisional
Probab=99.93 E-value=1e-24 Score=219.51 Aligned_cols=169 Identities=43% Similarity=0.782 Sum_probs=143.6
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+.+..+||+|+|++|||||||+++|+++.+. .+.|+.+.++....+.+++..+.+.||||||++++..++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 4567799999999999999999999998874 567888888888888888888999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 83 LILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
+|+|||+++++||+++.. |...+.... ...+.|+++||||+|+..
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~------------------------------~~~~~~~ilv~NK~Dl~~---- 134 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYS------------------------------TNQDCVKMLVGNKVDRES---- 134 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccccc----
Confidence 999999999999999976 666554322 124567788888888752
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.+.+..+++..++...++.|+||||++|.||+++
T Consensus 135 ----------------------------------------------~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 135 ----------------------------------------------ERDVSREEGMALAKEHGCLFLECSAKTRENVEQC 168 (211)
T ss_pred ----------------------------------------------cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 2346677888899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 242 FMQIAAELMEK 252 (730)
Q Consensus 242 Fe~Li~~l~e~ 252 (730)
|+.|.+.+.+.
T Consensus 169 ~~~l~~~~~~~ 179 (211)
T PLN03118 169 FEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHhh
Confidence 99999988654
No 90
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=7.9e-25 Score=211.30 Aligned_cols=171 Identities=26% Similarity=0.547 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
.||+|+|++|||||||+++|.++.+...+.|+++..+ ...+.+++..+.+.+|||+|++++..++..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999999888888887444 456788888899999999999999988888999999999999
Q ss_pred ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
|+++++||+++. .|+..+.+.. ++.|+++|+||.|+.+.......
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~~-- 126 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC--------------------------------PNVPIILVGNKKDLRNDEHTRRE-- 126 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEeeChhcccChhhhhh--
Confidence 999999999985 4888775432 56899999999998643221100
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L 245 (730)
+. ....+.+..++++++++..+. .|++|||++|.||+++|++|
T Consensus 127 ---------------------------------i~---~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 170 (175)
T cd01870 127 ---------------------------------LA---KMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMA 170 (175)
T ss_pred ---------------------------------hh---hccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHH
Confidence 00 112346778899999998875 79999999999999999999
Q ss_pred HHHH
Q psy17467 246 AAEL 249 (730)
Q Consensus 246 i~~l 249 (730)
++.+
T Consensus 171 ~~~~ 174 (175)
T cd01870 171 TRAA 174 (175)
T ss_pred HHHh
Confidence 8754
No 91
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.93 E-value=9.4e-25 Score=210.75 Aligned_cols=162 Identities=29% Similarity=0.553 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|.++.+...+.|+++. .+.+.+.+++..+.+++|||+|++++..+++.+++.++++|+||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 78999999999999999999999998888888874 45677888888899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++++|+.+..|.+.+.+.. ..++.|++++|||.|+.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piiiv~nK~D~~~---------- 120 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIK------------------------------DSDNVPMVLVGNKADLED---------- 120 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh------------------------------CCCCCCEEEEEEChhccc----------
Confidence 9999999999999998886532 125788888999998852
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.+++..+++..+ +++++|||++|.||+++|++++
T Consensus 121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 121 ----------------------------------------DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ----------------------------------------cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 23456677888888888 7999999999999999999999
Q ss_pred HHHH
Q psy17467 247 AELM 250 (730)
Q Consensus 247 ~~l~ 250 (730)
..+.
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7664
No 92
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.93 E-value=1.8e-24 Score=205.75 Aligned_cols=162 Identities=42% Similarity=0.801 Sum_probs=143.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+|+|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++++|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999999887889998888888999999999999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++++|+.+..|+..+.... .++.|+++++||.|+.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iivv~nK~D~~~--------- 120 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNA-------------------------------SPNIIIALVGNKADLES--------- 120 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEECccccc---------
Confidence 99999999999999999987643 15677788888888742
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.++...++...++.++++||++|.|++++|++++
T Consensus 121 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 121 -----------------------------------------KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred -----------------------------------------cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 234566788888999999999999999999999999998
Q ss_pred HHH
Q psy17467 247 AEL 249 (730)
Q Consensus 247 ~~l 249 (730)
+.+
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 765
No 93
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=4.4e-25 Score=214.89 Aligned_cols=163 Identities=21% Similarity=0.316 Sum_probs=138.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
...+||+++|++|||||||+++|+++.|. ..+.||++.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999998 88889999888778888899889999999999999988999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.+|+.+..|+..+.. ..+.|+++|+||+|+.+.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---------------------------------~~~~p~iiv~NK~Dl~~~----- 123 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---------------------------------LGEIPCLFVAAKADLDEQ----- 123 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---------------------------------CCCCeEEEEEEccccccc-----
Confidence 999999999999999888876421 135788888899988521
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF 242 (730)
+.+..++.+++++.+++ .++++||++|.|++++|
T Consensus 124 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 124 ---------------------------------------------QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred ---------------------------------------------ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 22333456777888887 47999999999999999
Q ss_pred HHHHHHHH
Q psy17467 243 MQIAAELM 250 (730)
Q Consensus 243 e~Li~~l~ 250 (730)
+.+++.+.
T Consensus 159 ~~l~~~~~ 166 (169)
T cd01892 159 TKLATAAQ 166 (169)
T ss_pred HHHHHHhh
Confidence 99988763
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.93 E-value=1.9e-24 Score=207.07 Aligned_cols=168 Identities=38% Similarity=0.660 Sum_probs=143.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++++++.+...+.++++.++....+.+++..+.+++||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888889988888888899998999999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.+|+.+..|.+.+...... ....+.|+++|+||.|+.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~p~ilv~nK~Dl~~---------- 123 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASP---------------------------SDPENFPFVVLGNKIDLEE---------- 123 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCc---------------------------cCCCCceEEEEEECccccc----------
Confidence 999999999999999887654310 1124678888888888852
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.++.+.+++..+ ++++++||++|.|++++|+.++
T Consensus 124 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 163 (172)
T cd01862 124 ----------------------------------------KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIA 163 (172)
T ss_pred ----------------------------------------ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHH
Confidence 13345677778888887 7999999999999999999999
Q ss_pred HHHHHH
Q psy17467 247 AELMEK 252 (730)
Q Consensus 247 ~~l~e~ 252 (730)
+.+.+.
T Consensus 164 ~~~~~~ 169 (172)
T cd01862 164 RKALEQ 169 (172)
T ss_pred HHHHhc
Confidence 888654
No 95
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.93 E-value=5.6e-25 Score=211.08 Aligned_cols=161 Identities=30% Similarity=0.471 Sum_probs=135.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh-hhhhHhhhccccEEEEEe
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF-RSITQSYYRSAHALILVY 87 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~-~sl~~~~~r~ADaIILVy 87 (730)
||+++|++|||||||+++++++.+...+.|+.+.. +...+.+++..+.+++||++|++.+ ......+++++|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 69999999999999999999998887777877533 4566788888899999999999853 445677899999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.||+.+..|+..+..... ...+.|+++||||+|+..
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-----------------------------~~~~~piilv~nK~Dl~~---------- 120 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKK-----------------------------RDREIPVILVGNKADLLH---------- 120 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhc-----------------------------CCCCCCEEEEEECCchHH----------
Confidence 99999999999999988865431 124678888888888742
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC-CChHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS-DNVEKLFMQIA 246 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG-~GVeeLFe~Li 246 (730)
.+.++.+++.++++..+++|++|||++| .||+++|+.++
T Consensus 121 ----------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 121 ----------------------------------------YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred ----------------------------------------hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHH
Confidence 2457778899999999999999999999 59999999999
Q ss_pred HHH
Q psy17467 247 AEL 249 (730)
Q Consensus 247 ~~l 249 (730)
+.+
T Consensus 161 ~~~ 163 (165)
T cd04146 161 REV 163 (165)
T ss_pred HHH
Confidence 866
No 96
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=2.8e-24 Score=206.02 Aligned_cols=168 Identities=73% Similarity=1.205 Sum_probs=145.9
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA 80 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A 80 (730)
|+++++.+||+++|++|||||||+++++++.+...+.++++.++....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 78788889999999999999999999999888888889998888888889999889999999999999999889999999
Q ss_pred cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-------------------------------~~~~~i~v~NK~D~~~--- 126 (169)
T cd04114 81 NALILTYDITCEESFRCLPEWLREIEQYAN-------------------------------NKVITILVGNKIDLAE--- 126 (169)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCC-------------------------------CCCeEEEEEECccccc---
Confidence 999999999999999999999998865431 3567778888888742
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee 240 (730)
.+.+..+..+.+.+...+.+++|||++|.|+++
T Consensus 127 -----------------------------------------------~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 127 -----------------------------------------------RREVSQQRAEEFSDAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred -----------------------------------------------ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence 234556667778877788999999999999999
Q ss_pred HHHHHHHHH
Q psy17467 241 LFMQIAAEL 249 (730)
Q Consensus 241 LFe~Li~~l 249 (730)
+|+.|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998754
No 97
>KOG0395|consensus
Probab=99.93 E-value=4.3e-25 Score=222.59 Aligned_cols=164 Identities=31% Similarity=0.515 Sum_probs=148.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|.+|||||+|+.+|.++.|...|.||++ +.+.+.+.+++..+.+.|+||+|++++..+...+++++|++++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 47999999999999999999999999999999998 88899999999999999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++|+.||+.+..+++.|.+... ...+|+++||||+|+..
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~------------------------------~~~~PivlVGNK~Dl~~--------- 122 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKG------------------------------RDDVPIILVGNKCDLER--------- 122 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC------------------------------cCCCCEEEEEEcccchh---------
Confidence 999999999999999999954331 13467777777777742
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.|.|+.++++.++..++|+|+||||+.+.||+++|..++
T Consensus 123 -----------------------------------------~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~ 161 (196)
T KOG0395|consen 123 -----------------------------------------ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV 161 (196)
T ss_pred -----------------------------------------ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence 388999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy17467 247 AELME 251 (730)
Q Consensus 247 ~~l~e 251 (730)
+.+..
T Consensus 162 r~~~~ 166 (196)
T KOG0395|consen 162 REIRL 166 (196)
T ss_pred HHHHh
Confidence 98854
No 98
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=2.6e-24 Score=203.00 Aligned_cols=161 Identities=38% Similarity=0.677 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++++++.+...+.++.+.+.....+.+.+..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999988777778877777778888888889999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++++++.+..|++++..... .+.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piiiv~nK~D~~~---------- 119 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-------------------------------NNISLVIVGNKIDLER---------- 119 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-------------------------------CCCeEEEEEECccccc----------
Confidence 99999999999999998876431 3577888888888752
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.+..++..++++..++.+++|||++|.|++++|+++.+
T Consensus 120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 120 ----------------------------------------QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred ----------------------------------------ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 2345667788888889999999999999999999999987
Q ss_pred HH
Q psy17467 248 EL 249 (730)
Q Consensus 248 ~l 249 (730)
.+
T Consensus 160 ~~ 161 (162)
T cd04123 160 RM 161 (162)
T ss_pred Hh
Confidence 65
No 99
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.92 E-value=1.4e-24 Score=221.53 Aligned_cols=163 Identities=26% Similarity=0.396 Sum_probs=137.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhc-cccEEEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYR-SAHALIL 85 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r-~ADaIIL 85 (730)
+||+++|++|||||||+++|+++.+. ..+.++.+.+++...+.+++..+.+.+|||+|++ ..+...+++ ++|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 6676777667888889999999999999999998 234455667 9999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.||+.+..|+..+.... ...+.|+++|+||+|+..
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~------------------------------~~~~~piilV~NK~Dl~~-------- 120 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNR------------------------------QLEDRPIILVGNKSDLAR-------- 120 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEEChhccc--------
Confidence 999999999999999999886542 114678888888888742
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
.+.++.+++.+++...++.|+||||++|.||+++|+.+
T Consensus 121 ------------------------------------------~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 121 ------------------------------------------SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred ------------------------------------------cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 24567788889999999999999999999999999999
Q ss_pred HHHHHHH
Q psy17467 246 AAELMEK 252 (730)
Q Consensus 246 i~~l~e~ 252 (730)
++.+...
T Consensus 159 ~~~~~~~ 165 (221)
T cd04148 159 VRQIRLR 165 (221)
T ss_pred HHHHHhh
Confidence 9888543
No 100
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.92 E-value=3.6e-24 Score=222.73 Aligned_cols=169 Identities=26% Similarity=0.405 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|+++.|...+.||++ ++..+.+.+++..+.++||||+|++.+..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999988889987 777788889999999999999999999888888999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|+++++||+++..|++++...... . ........+.|+++||||+|+.+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~------~----------------~~~~~~~~~~piIivgNK~Dl~~---------- 127 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSC------L----------------KNKTKENVKIPMVICGNKADRDF---------- 127 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcc------c----------------ccccccCCCCcEEEEEECccchh----------
Confidence 999999999999999998654210 0 00001224678888888888742
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-cCCeEEEEecCCCCChHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.+..+++.+++.. .++.+++|||++|.||+++|++|+
T Consensus 128 ----------------------------------------~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 128 ----------------------------------------PREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred ----------------------------------------ccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 145667777777654 468899999999999999999998
Q ss_pred HHH
Q psy17467 247 AEL 249 (730)
Q Consensus 247 ~~l 249 (730)
...
T Consensus 168 ~~~ 170 (247)
T cd04143 168 SLA 170 (247)
T ss_pred HHh
Confidence 755
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.91 E-value=1.3e-23 Score=198.99 Aligned_cols=162 Identities=33% Similarity=0.549 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++++++.+...+.++.+ +...+...+++..+.+.+||++|+..+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999998888878776 445667778888899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.+|+.+..|+..+..... ..+.|+++|+||+|+..
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~~piiiv~NK~D~~~---------- 119 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKD------------------------------DDNVPLLLVGNKCDLED---------- 119 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEEEcccccc----------
Confidence 99999999999999998876431 24678888888888752
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.+..++...++..++++++++||++|.|++++|+.+.+
T Consensus 120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 120 ----------------------------------------KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ----------------------------------------ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 1234556777888888999999999999999999999988
Q ss_pred HHH
Q psy17467 248 ELM 250 (730)
Q Consensus 248 ~l~ 250 (730)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 102
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.91 E-value=5.1e-24 Score=224.80 Aligned_cols=245 Identities=20% Similarity=0.144 Sum_probs=202.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh-------Hhhhccc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT-------QSYYRSA 80 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~-------~~~~r~A 80 (730)
..|++||.|+||||||++++++.+.....++.++.+..+.++.++| +++|+.|+||.-.-.+.. -...++|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 5799999999999999999999998888889988899999999999 889999999865433322 2458899
Q ss_pred cEEEEEeecCCCCc-hhhhHHHHHHHHHHhcccceEEEEecc---------------CchhhHHHHHhhhcccccCCCCC
Q psy17467 81 HALILVYDISCQPT-FDCLTDWLREIEEYASFKVLRVLVGGT---------------SGLKIVNEMASAAGLLCTVDPAL 144 (730)
Q Consensus 81 DaIILVyDvtd~eS-fe~L~~wleeI~~~~~~~~piVLVg~k---------------~dl~~~~~i~~~~g~~~~~~~~~ 144 (730)
|+||+|+|+....+ .+.+.+.+++.........|-+.+-.+ .|++.+++++++|+++++
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA----- 216 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA----- 216 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc-----
Confidence 99999999997666 667777777754444444454444433 789999999999999665
Q ss_pred ceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC
Q psy17467 145 ATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD 224 (730)
Q Consensus 145 PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg 224 (730)
-|++-++ +.+++ .+++..++..|.|.++|.||+|+. +.++...+.+..
T Consensus 217 ~V~Ir~d-vTlDd--------------------------~id~l~~nrvY~p~l~v~NKiD~~----~~e~~~~l~~~~- 264 (365)
T COG1163 217 DVLIRED-VTLDD--------------------------LIDALEGNRVYKPALYVVNKIDLP----GLEELERLARKP- 264 (365)
T ss_pred eEEEecC-CcHHH--------------------------HHHHHhhcceeeeeEEEEeccccc----CHHHHHHHHhcc-
Confidence 3444443 55543 466778888999999999999985 356777777666
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhc
Q psy17467 225 MYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKK 303 (730)
Q Consensus 225 ~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~ 303 (730)
.++.+||++|.|++++.+.+.+.+ .++|+|+++++..++..+|.++.+++++.++|+. |++
T Consensus 265 -~~v~isa~~~~nld~L~e~i~~~L-----------------~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~ 326 (365)
T COG1163 265 -NSVPISAKKGINLDELKERIWDVL-----------------GLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRD 326 (365)
T ss_pred -ceEEEecccCCCHHHHHHHHHHhh-----------------CeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHH
Confidence 679999999999999999999999 9999999999999999999999999999999998 999
Q ss_pred CCCCce
Q psy17467 304 FPNIDI 309 (730)
Q Consensus 304 ~p~~~~ 309 (730)
+...|+
T Consensus 327 l~~~Fr 332 (365)
T COG1163 327 LVENFR 332 (365)
T ss_pred HHHhcc
Confidence 988885
No 103
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.91 E-value=2.7e-23 Score=193.40 Aligned_cols=158 Identities=53% Similarity=0.912 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++++++.+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999888899999999999999888899999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++++++.+..|+..+..... ++.|+++++||+|+..
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~p~ivv~nK~D~~~---------- 119 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-------------------------------ENIPIILVGNKIDLED---------- 119 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-------------------------------CCCcEEEEEEcccccc----------
Confidence 99999999999999999876531 4577888888888741
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
...+..++..+++...+++++++||++|.|++++|++|.
T Consensus 120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 120 ----------------------------------------QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ----------------------------------------cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 134566888889988899999999999999999999886
No 104
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.91 E-value=1.8e-23 Score=206.47 Aligned_cols=170 Identities=27% Similarity=0.544 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
.||+|+|++|||||||++++..+.+...+.++++..+ ...+.+++..+.+.+||++|++.+......+++++|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888887778776443 456677888889999999999888877777889999999999
Q ss_pred ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
|++++++|+.+. .|++.+.+.. ++.|+++||||+|+.++...
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~piilvgnK~Dl~~~~~~----- 123 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC--------------------------------PNVPVILVGLKKDLRQDAVA----- 123 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEeeChhhhhCccc-----
Confidence 999999999996 5999886532 46899999999998542100
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L 245 (730)
.......+.++.+++..+++..++ .|+||||++|.||+++|+.+
T Consensus 124 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l 168 (187)
T cd04129 124 -----------------------------------KEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAA 168 (187)
T ss_pred -----------------------------------ccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHH
Confidence 000112467778899999999996 89999999999999999999
Q ss_pred HHHHH
Q psy17467 246 AAELM 250 (730)
Q Consensus 246 i~~l~ 250 (730)
.+.+.
T Consensus 169 ~~~~~ 173 (187)
T cd04129 169 TRAAL 173 (187)
T ss_pred HHHHh
Confidence 98773
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.91 E-value=2.3e-23 Score=199.40 Aligned_cols=168 Identities=32% Similarity=0.622 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|+++.+...+.|+.. +.....+..++..+.+++||+||++++......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999999777777776 445666777888899999999999988888888899999999999
Q ss_pred ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
|++++.+|..+. .|+..+.... ++.|+++||||+|+.+.....
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~p~ivv~nK~Dl~~~~~~~---- 123 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC--------------------------------PNVPIILVGTKIDLRDDENTL---- 123 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCCEEEEEccHHhhhchhhh----
Confidence 999999998775 4877765432 478999999999987533210
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe~L 245 (730)
.+.+-....+..+++.+++...++ .|+++||++|.|++++|+.|
T Consensus 124 -----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 124 -----------------------------------KKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred -----------------------------------hhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHH
Confidence 000111245678889999999988 99999999999999999998
Q ss_pred HH
Q psy17467 246 AA 247 (730)
Q Consensus 246 i~ 247 (730)
++
T Consensus 169 ~~ 170 (171)
T cd00157 169 IR 170 (171)
T ss_pred hh
Confidence 75
No 106
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=1.5e-23 Score=204.23 Aligned_cols=155 Identities=19% Similarity=0.320 Sum_probs=121.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+++|++|||||||+++|..+.+.. +.||+|.++. .+... .+.+++|||+|++++..++..++++||++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999887754 5688886653 33333 4889999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.+|+++..|+.++.... ..++.|++||+||+|+.+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~-------- 124 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDR------------------------------EMRDALLLVFANKQDLPD-------- 124 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCH------------------------------hhcCCcEEEEEECcCCcc--------
Confidence 999999999999888777764321 014578888888888742
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-----hcCCeEEEEecCCCCChHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-----RHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-----~lg~~fvEtSAktG~GVee 240 (730)
.++.+++++++. ..++.+++|||++|.||++
T Consensus 125 --------------------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 125 --------------------------------------------AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred --------------------------------------------CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 123444444432 1235789999999999999
Q ss_pred HHHHHHH
Q psy17467 241 LFMQIAA 247 (730)
Q Consensus 241 LFe~Li~ 247 (730)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 107
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.91 E-value=1.9e-23 Score=202.61 Aligned_cols=156 Identities=23% Similarity=0.348 Sum_probs=124.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
||+++|++|||||||+++|.++.+.. +.||++.++. .+.+++ +.+++|||||+.++...+..+++++|++|+|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987754 6788875553 444444 889999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~ 168 (730)
++++.+|+++..|+..+.+.. ...+.|++|||||.|+.+
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~----------- 114 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEK------------------------------ELRDALLLIFANKQDVAG----------- 114 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcCh------------------------------hhCCCCEEEEEeCcCccc-----------
Confidence 999999999999988875422 013467888888888742
Q ss_pred hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC------CeEEEEecCCCCChHHHH
Q psy17467 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD------MYYLETSAKASDNVEKLF 242 (730)
Q Consensus 169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg------~~fvEtSAktG~GVeeLF 242 (730)
.++.+++++++...+ +.+++|||++|.||+++|
T Consensus 115 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 115 -----------------------------------------ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred -----------------------------------------CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 244556666554222 368899999999999999
Q ss_pred HHHHHHHHH
Q psy17467 243 MQIAAELME 251 (730)
Q Consensus 243 e~Li~~l~e 251 (730)
++|.+.+.+
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999887643
No 108
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.90 E-value=4.9e-23 Score=203.04 Aligned_cols=165 Identities=18% Similarity=0.309 Sum_probs=130.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
.+||+++|++|||||||++++..+.+... .||.|.+.....+.+ ++..+.+.+|||+|++++..++..+++++|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 38999999999999999999999888654 588887766666655 4467899999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.+++.+..|+.++.... ...+.|+++|+||+|+.+.
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~------------------------------~~~~~p~iiv~NK~D~~~~------- 124 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFS------------------------------ENQGVPVLVLANKQDLPNA------- 124 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhh------------------------------hcCCCcEEEEEECcCcccc-------
Confidence 999999999999988888876532 1146788888999998421
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH------hcCCeEEEEecCCCCChH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK------RHDMYYLETSAKASDNVE 239 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak------~lg~~fvEtSAktG~GVe 239 (730)
+..++.+.+.. ..++.+++|||++|.||+
T Consensus 125 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 125 ---------------------------------------------LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred ---------------------------------------------CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 12223333221 123568999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17467 240 KLFMQIAAELMEKLA 254 (730)
Q Consensus 240 eLFe~Li~~l~e~~~ 254 (730)
++|++|++.+.+.+.
T Consensus 160 ~l~~~l~~~l~~~~~ 174 (183)
T cd04152 160 EGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998865443
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=8.5e-23 Score=206.01 Aligned_cols=164 Identities=31% Similarity=0.570 Sum_probs=141.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+....+||+++|++|||||||+++++.+.+...+.||++.++....+..++..+.+++|||+|++.+..++..+++++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 44567999999999999999999999999998999999998888888888889999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.||+.+..|+..+.... .+.|++++|||+|+.+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~~i~lv~nK~Dl~~----- 127 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--------------------------------ENIPIVLVGNKVDVKD----- 127 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECccCcc-----
Confidence 999999999999999999999886532 4567788888888742
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
+.+..+ ...+++..++.|+++||++|.|++++|
T Consensus 128 ----------------------------------------------~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 128 ----------------------------------------------RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred ----------------------------------------------ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 222222 345677788999999999999999999
Q ss_pred HHHHHHHH
Q psy17467 243 MQIAAELM 250 (730)
Q Consensus 243 e~Li~~l~ 250 (730)
.++++.+.
T Consensus 161 ~~ia~~l~ 168 (215)
T PTZ00132 161 LWLARRLT 168 (215)
T ss_pred HHHHHHHh
Confidence 99998874
No 110
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.90 E-value=8.4e-24 Score=204.95 Aligned_cols=156 Identities=20% Similarity=0.271 Sum_probs=124.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeec
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDI 89 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDv 89 (730)
|+++|++|||||||+++|.++.+...+.||+|.+. ..+++..+.+++||++|++++..++..++++||++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999988888889988543 23444558999999999999999999999999999999999
Q ss_pred CCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhh
Q psy17467 90 SCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVF 169 (730)
Q Consensus 90 td~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~ 169 (730)
+++.+|..++.|+.++.... ++.|+++||||.|+......
T Consensus 78 t~~~s~~~~~~~l~~~~~~~--------------------------------~~~piilv~NK~Dl~~~~~~-------- 117 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP--------------------------------PDLPLVVLANKQDLPAARSV-------- 117 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC--------------------------------CCCcEEEEEeCcCCcCCCCH--------
Confidence 99999999998888874321 57889999999998531100
Q ss_pred hhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC------CCChHHHHH
Q psy17467 170 VAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA------SDNVEKLFM 243 (730)
Q Consensus 170 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt------G~GVeeLFe 243 (730)
.+ .....++..+++..++.+++|||++ ++||+++|+
T Consensus 118 ----------------------------------~~----i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 118 ----------------------------------QE----IHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred ----------------------------------HH----HHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 00 0001234556677788899999888 999999999
Q ss_pred HHHH
Q psy17467 244 QIAA 247 (730)
Q Consensus 244 ~Li~ 247 (730)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8874
No 111
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=7.7e-23 Score=204.03 Aligned_cols=162 Identities=27% Similarity=0.441 Sum_probs=134.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
||+++|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+++||++|+..+..++..++.++|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 699999999999999999999999888877775 5666778888888999999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~ 168 (730)
++++.+|+.+..|+..+.... ...+.|+++|+||+|+...
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~NK~Dl~~~---------- 119 (198)
T cd04147 80 VDDPESFEEVERLREEILEVK------------------------------EDKFVPIVVVGNKADSLEE---------- 119 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCcEEEEEEccccccc----------
Confidence 999999999999998886643 1246788899999998531
Q ss_pred hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.+..+++.+.+. ..++.++++||++|.||+++|+++++
T Consensus 120 ---------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 120 ---------------------------------------ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred ---------------------------------------cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 12344444444443 45678999999999999999999998
Q ss_pred HHH
Q psy17467 248 ELM 250 (730)
Q Consensus 248 ~l~ 250 (730)
.+.
T Consensus 161 ~~~ 163 (198)
T cd04147 161 QAN 163 (198)
T ss_pred Hhh
Confidence 763
No 112
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.90 E-value=1.3e-22 Score=197.25 Aligned_cols=162 Identities=29% Similarity=0.493 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
.||+++|++|||||||+++++++.+...+.|+.+..+ ...+.+++..+.+++|||||++++..++..++..+|++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999998887888876444 566778888889999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|+++..+|+.+..|+..+.+.. ...+.|+++|+||+|+..
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~NK~Dl~~---------- 120 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDML------------------------------GKESVPIVLVGNKSDLHT---------- 120 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEEchhhhh----------
Confidence 9999999999999888876532 124578888888888742
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.+.+..++...+++.++++++++||++|.|++++|+++++
T Consensus 121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 121 ----------------------------------------QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ----------------------------------------cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 1345556777888888899999999999999999999998
Q ss_pred HHH
Q psy17467 248 ELM 250 (730)
Q Consensus 248 ~l~ 250 (730)
.+.
T Consensus 161 ~~~ 163 (180)
T cd04137 161 EIE 163 (180)
T ss_pred HHH
Confidence 774
No 113
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=7.8e-23 Score=202.06 Aligned_cols=156 Identities=21% Similarity=0.339 Sum_probs=120.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+++|++|||||||++++..+.+. .+.||+|.+. ..+..++ +.+++||++|++++..+|..+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3489999999999999999999988876 4678888554 3344444 889999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.+|+.+..|+..+.... .-++.|++|+|||.|+.+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~------------------------------~~~~~piilv~NK~Dl~~-------- 132 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNED------------------------------ELRDAVLLVFANKQDLPN-------- 132 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCH------------------------------hhCCCCEEEEEECCCCCC--------
Confidence 999999999998877776653211 014678888888888752
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--------CeEEEEecCCCCC
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--------MYYLETSAKASDN 237 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--------~~fvEtSAktG~G 237 (730)
.+..++ +.+.++ +.+++|||++|+|
T Consensus 133 --------------------------------------------~~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~~g~g 165 (181)
T PLN00223 133 --------------------------------------------AMNAAE---ITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
T ss_pred --------------------------------------------CCCHHH---HHHHhCccccCCCceEEEeccCCCCCC
Confidence 111222 222222 2466899999999
Q ss_pred hHHHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAELME 251 (730)
Q Consensus 238 VeeLFe~Li~~l~e 251 (730)
|+++|++|.+.+.+
T Consensus 166 v~e~~~~l~~~~~~ 179 (181)
T PLN00223 166 LYEGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 114
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.89 E-value=1.4e-22 Score=198.47 Aligned_cols=156 Identities=21% Similarity=0.339 Sum_probs=120.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||++++..+.+. .+.||+|.++. .+.++ .+.+++|||+|++++..++..++++||++|+|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999888875 46688886553 34444 48899999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.+|+.+.+|+..+.... .-++.|++|||||.|+.+.
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~-------- 129 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNED------------------------------ELRDAVILVFANKQDLPDA-------- 129 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCH------------------------------hhcCCcEEEEEeCcCcccC--------
Confidence 99999999999988888765321 0146788899999998531
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVeeL 241 (730)
.+.++..+. ++...+.+++|||++|.||+++
T Consensus 130 --------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 130 --------------------------------------------MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred --------------------------------------------CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 111111111 1122345789999999999999
Q ss_pred HHHHHHHH
Q psy17467 242 FMQIAAEL 249 (730)
Q Consensus 242 Fe~Li~~l 249 (730)
|++|.+.+
T Consensus 166 ~~~l~~~~ 173 (175)
T smart00177 166 LTWLSNNL 173 (175)
T ss_pred HHHHHHHh
Confidence 99997764
No 115
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.89 E-value=1.8e-22 Score=190.01 Aligned_cols=159 Identities=33% Similarity=0.569 Sum_probs=138.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
||+|+|++|||||||+++++++.+...+.++.+ +.....+.+++..+.+++||++|+..+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 699999999999999999999888888888877 6667778888878999999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~ 168 (730)
++++++++++..|+..+..... ..+.|+++|+||+|+..
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~~p~ivv~nK~D~~~----------- 118 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKD------------------------------DEDIPIVLVGNKCDLEN----------- 118 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCcEEEEEECCcccc-----------
Confidence 9999999999999888866431 14678888888888752
Q ss_pred hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
.+.++.++++.+++..+++++++||++|.|++++|+.|++.
T Consensus 119 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 119 ---------------------------------------ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred ---------------------------------------cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 13456788899999989999999999999999999999864
No 116
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.89 E-value=1e-22 Score=196.19 Aligned_cols=153 Identities=20% Similarity=0.365 Sum_probs=117.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||++++..+.+. .+.||+|.+.. .+.+. .+.+++||++|++++..++..++++||++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999888886 46788886543 34444 488999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.+|+.+..|+..+.... ...+.|++|++||.|+.+.
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~--------- 116 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNED------------------------------ELRDAVLLVFANKQDLPNA--------- 116 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcH------------------------------HhcCCCEEEEEECCCCCCC---------
Confidence 9999999999988777764321 0135688888888888421
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH-HHHHH----HhcCCeEEEEecCCCCChHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV-GEDFA----KRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee-~~~la----k~lg~~fvEtSAktG~GVeeLF 242 (730)
+..++ ...++ ...++.+++|||++|.||+++|
T Consensus 117 -------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 117 -------------------------------------------MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred -------------------------------------------CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 11111 12221 1234468899999999999999
Q ss_pred HHHHH
Q psy17467 243 MQIAA 247 (730)
Q Consensus 243 e~Li~ 247 (730)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 117
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=2e-22 Score=194.43 Aligned_cols=161 Identities=23% Similarity=0.352 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|.++.+...+ ++.. +.......+++..+.+++|||+|.+.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccC-CCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999987664 3332 222344566777899999999999888777778889999999999
Q ss_pred ecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 88 DISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 88 Dvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
|++++.||+.+. .|++.+.... ++.|+++||||+|+.+...
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~pviiv~nK~Dl~~~~~------ 120 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG--------------------------------VKVPIILVGNKSDLRDGSS------ 120 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEchhcccccc------
Confidence 999999999985 5888776532 4678889999999864210
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCCCChHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG~GVeeLFe~ 244 (730)
.....++...++..++ ..+++|||++|.|++++|+.
T Consensus 121 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 121 ------------------------------------------QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ------------------------------------------hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 0001233334444332 37999999999999999999
Q ss_pred HHHHHH
Q psy17467 245 IAAELM 250 (730)
Q Consensus 245 Li~~l~ 250 (730)
+.+.+.
T Consensus 159 ~~~~~~ 164 (166)
T cd01893 159 AQKAVL 164 (166)
T ss_pred HHHHhc
Confidence 988764
No 118
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.89 E-value=1.7e-22 Score=196.28 Aligned_cols=156 Identities=23% Similarity=0.315 Sum_probs=122.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+..+||+++|++|||||||++++.+..+ ..+.||+|. ....+.+++ +.+++|||||++.+..++..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4458999999999999999999998754 455678773 334555664 78999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+..+.... ...+.|+++|+||+|+.+.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~iiv~nK~Dl~~~------ 130 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEE------------------------------RLAGATLLILANKQDLPGA------ 130 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCh------------------------------hhcCCCEEEEEECcccccC------
Confidence 9999999999999888887764321 1246788888998888521
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-----hcCCeEEEEecCCCCChH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-----RHDMYYLETSAKASDNVE 239 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-----~lg~~fvEtSAktG~GVe 239 (730)
...++...+.+ ..++++++|||++|.|++
T Consensus 131 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 131 ----------------------------------------------LSEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred ----------------------------------------------CCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 12233333332 345689999999999999
Q ss_pred HHHHHHHH
Q psy17467 240 KLFMQIAA 247 (730)
Q Consensus 240 eLFe~Li~ 247 (730)
++|++++.
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 119
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=2.9e-22 Score=198.04 Aligned_cols=159 Identities=21% Similarity=0.357 Sum_probs=121.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||++++..+.+.. +.||++.++. .+..++ +.+++|||+|++++..++..+++++|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999888864 6688885543 344444 8899999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.+|+.+..|+..+.... ...+.|++|||||.|+.+.
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~-------- 133 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSED------------------------------ELRDAVLLVFANKQDLPNA-------- 133 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCH------------------------------hhcCCCEEEEEeCCCCCCC--------
Confidence 99999999998887776653211 0135688888899988531
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HHH----HHhcCCeEEEEecCCCCChHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDF----AKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~l----ak~lg~~fvEtSAktG~GVeeL 241 (730)
++.++. ..+ +....+.+++|||++|.||+++
T Consensus 134 --------------------------------------------~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 134 --------------------------------------------MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred --------------------------------------------CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 111111 111 1122345779999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 242 FMQIAAELMEK 252 (730)
Q Consensus 242 Fe~Li~~l~e~ 252 (730)
|++|.+.+.++
T Consensus 170 ~~~l~~~i~~~ 180 (182)
T PTZ00133 170 LDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHh
Confidence 99999877543
No 120
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.89 E-value=2.5e-22 Score=203.31 Aligned_cols=138 Identities=20% Similarity=0.321 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-----CeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-----NERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-----g~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+||+++|+++||||||+++|.++.|...+.||+|.++..+.+.++ +..+.++||||+|++++..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999999999999988888888774 567999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
+|+|||++++.||+++..|++++........+... . . ..+.......+++|++|||||.|+.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~-~--~---------~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLV-T--N---------GDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhcccccccc-c--c---------ccccccccCCCCceEEEEEECccchh
Confidence 99999999999999999999999765422111100 0 0 00000111235788888888888853
No 121
>KOG4252|consensus
Probab=99.89 E-value=6.4e-24 Score=207.30 Aligned_cols=171 Identities=33% Similarity=0.596 Sum_probs=157.6
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+++.-||++|+|..+|||||++.||+.+-|...|..++|.++....+.+++..+.+.+|||+|+++|+.+.+.||++|.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 57788999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
.+|||+.+|+.||+.+.+|++.+...+ ..+|.|+|-||+||.++
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~--------------------------------~~IPtV~vqNKIDlved---- 139 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKET--------------------------------ERIPTVFVQNKIDLVED---- 139 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHh--------------------------------ccCCeEEeeccchhhHh----
Confidence 999999999999999999999997765 56788888899998754
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+++.++++.+++.+.+.++.+|++...||..+|
T Consensus 140 ----------------------------------------------s~~~~~evE~lak~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 140 ----------------------------------------------SQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred ----------------------------------------------hhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 3577889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 243 MQIAAELMEKLAE 255 (730)
Q Consensus 243 e~Li~~l~e~~~~ 255 (730)
..+++.+.+...+
T Consensus 174 ~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 174 AYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998776555
No 122
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.89 E-value=2.6e-22 Score=190.43 Aligned_cols=116 Identities=20% Similarity=0.328 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+|+++|++|||||||+++|+++.+ ...+.||+|.... .+... .+.+++|||||++++..++..+++++|++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998763 5567788885432 23333 488999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
|++++.+|+.+..|+..+.+.. .....+.|+++|+||+|+.
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHP----------------------------DIKHRRVPILFFANKMDLP 117 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCc----------------------------ccccCCCCEEEEEeCcccc
Confidence 9999999999888888775421 0112578899999999985
No 123
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.87 E-value=7.7e-22 Score=187.50 Aligned_cols=158 Identities=22% Similarity=0.399 Sum_probs=118.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
||+++|++|||||||+++|.++.+.. +.||.+.++ ..+... ..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988764 457877544 334443 35789999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~ 168 (730)
++++.++..+..|+.++.+.. ...+.|+++|+||+|+.+....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~~~~------- 119 (160)
T cd04156 77 SSDEARLDESQKELKHILKNE------------------------------HIKGVPVVLLANKQDLPGALTA------- 119 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhch------------------------------hhcCCCEEEEEECcccccCcCH-------
Confidence 999999999888888775421 1146789999999998531100
Q ss_pred hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChH-HHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTE-VGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~e-e~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
+++... ....++...++.+++|||++|+||+++|++|.+
T Consensus 120 ----------------------------------------~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 120 ----------------------------------------EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ----------------------------------------HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 000000 011223334567999999999999999998864
No 124
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.87 E-value=1.9e-21 Score=191.12 Aligned_cols=117 Identities=19% Similarity=0.296 Sum_probs=95.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+++|++|||||||++++.++.+. .+.||.+.. ...+.+++ +.+.+||+||+..+...+..+++++|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 44689999999999999999999988774 466777643 34566666 77899999999999889999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
+|+|+++..+|+....|+..+.+.. ...+.|+++++||.|+.
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDE------------------------------ELANVPFLILGNKIDLP 133 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCc------------------------------cccCCCEEEEEeCCCCC
Confidence 9999999999988888888765421 12467889999999985
No 125
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.87 E-value=6e-22 Score=192.29 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
+|+++|++|||||||++++.+. +...+.||+|.. ...+.+++ +.+++||++|+..+..++..++++||++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 777788998854 34555554 889999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
++++.+|+.+..|+..+.+.. ...+.|+++|+||.|+.+
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~------------------------------~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHP------------------------------RVSGKPILVLANKQDKKN 114 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCc------------------------------cccCCcEEEEEeCCCCcC
Confidence 999999999999998876432 114678999999999864
No 126
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=7e-21 Score=196.38 Aligned_cols=209 Identities=19% Similarity=0.158 Sum_probs=153.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------hhhHhhhcccc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-------SITQSYYRSAH 81 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-------sl~~~~~r~AD 81 (730)
+|+++|.+|||||||++++++........+..+.+.....+.+++ ..+++||+||..+.. .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 799999999999999999998765444445555566677777877 679999999975432 12235789999
Q ss_pred EEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEecc---------------CchhhHHHHHhhhcccccCCCCCc
Q psy17467 82 ALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGT---------------SGLKIVNEMASAAGLLCTVDPALA 145 (730)
Q Consensus 82 aIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k---------------~dl~~~~~i~~~~g~~~~~~~~~P 145 (730)
++++|+|++++. +.+.+.+.++...-......|.+.+..+ .|.+.+++++.++|++++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~------ 153 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNA------ 153 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeE------
Confidence 999999998865 4445555555433222333343333322 577899999999999664
Q ss_pred eEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC
Q psy17467 146 TALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM 225 (730)
Q Consensus 146 VVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~ 225 (730)
.+.+-....+++ ..+...++..|.|.++|+||+|+ ++.+++..++.. .
T Consensus 154 ~v~~~~~~~~~~--------------------------~~~~~~~~~~y~p~iiV~NK~Dl----~~~~~~~~~~~~--~ 201 (233)
T cd01896 154 DVLIREDITVDD--------------------------LIDVIEGNRVYIPCLYVYNKIDL----ISIEELDLLARQ--P 201 (233)
T ss_pred EEEEccCCCHHH--------------------------HHHHHhCCceEeeEEEEEECccC----CCHHHHHHHhcC--C
Confidence 334433344433 45677888999999999999997 355666666654 3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcc
Q psy17467 226 YYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNI 274 (730)
Q Consensus 226 ~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~ 274 (730)
.++++||++|.|++++|+.+.+.+ +++|+|++
T Consensus 202 ~~~~~SA~~g~gi~~l~~~i~~~L-----------------~~irvy~k 233 (233)
T cd01896 202 NSVVISAEKGLNLDELKERIWDKL-----------------GLIRVYTK 233 (233)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHh-----------------CcEEEecC
Confidence 589999999999999999999988 88898874
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=5.7e-21 Score=182.75 Aligned_cols=153 Identities=25% Similarity=0.406 Sum_probs=116.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVF------PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f------~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+|+++|++|||||||++++++... ...+.||++.+. ..+.+++ ..+.+|||||++.+..++..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986422 334456776554 3455554 789999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|+|++++.+++.+..|+..+.+.. ...+.|+++++||+|+...
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~NK~D~~~~---- 122 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNE------------------------------ALEGVPLLILANKQDLPDA---- 122 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhCh------------------------------hhcCCCEEEEEEccccccC----
Confidence 999999999999998888888775432 1246788888999997531
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-------hcCCeEEEEecCCC
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-------RHDMYYLETSAKAS 235 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-------~lg~~fvEtSAktG 235 (730)
+..++...+.. ..+++++++||++|
T Consensus 123 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 123 ------------------------------------------------LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred ------------------------------------------------CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 11122222221 23468999999999
Q ss_pred CChHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAA 247 (730)
Q Consensus 236 ~GVeeLFe~Li~ 247 (730)
.|++++|++|++
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 128
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.86 E-value=1.4e-21 Score=186.55 Aligned_cols=152 Identities=22% Similarity=0.314 Sum_probs=113.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
||+++|++|||||||++++..+.+.. +.||++.+.. .+.+. .+.+++|||||++.+..++..+++.+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 69999999999999999998887754 4577775543 34444 4789999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~ 168 (730)
++++.++.....|+..+.+.. ..++.|+++|+||+|+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~piiiv~nK~Dl~~~~--------- 116 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEE------------------------------ELKGAVLLVFANKQDMPGAL--------- 116 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhch------------------------------hhcCCcEEEEEeCCCCCCCC---------
Confidence 999988877766655443211 11467889999999985210
Q ss_pred hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HHH----HHhcCCeEEEEecCCCCChHHHHH
Q psy17467 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDF----AKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~l----ak~lg~~fvEtSAktG~GVeeLFe 243 (730)
..++. ..+ ....+.++++|||++|.||+++|+
T Consensus 117 -------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 117 -------------------------------------------SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred -------------------------------------------CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 00111 111 112345799999999999999999
Q ss_pred HHHH
Q psy17467 244 QIAA 247 (730)
Q Consensus 244 ~Li~ 247 (730)
++++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9875
No 129
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.86 E-value=8.5e-21 Score=185.22 Aligned_cols=154 Identities=24% Similarity=0.355 Sum_probs=119.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++++++.+.. +.||++.++ ..+.+++ +.+.+||+||++.+...+..+++++|++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999999988875 568887554 3444454 8899999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++++|..+..|+..+.+.. ...+.|+++++||+|+.+.
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~------------------------------~~~~~p~viv~NK~Dl~~~-------- 131 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHE------------------------------DLRKAVLLVLANKQDLKGA-------- 131 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhch------------------------------hhcCCCEEEEEECCCCCCC--------
Confidence 99999999988887777664321 0145788888999998521
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH-HHHHH----HhcCCeEEEEecCCCCChHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV-GEDFA----KRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee-~~~la----k~lg~~fvEtSAktG~GVeeL 241 (730)
++.++ .+.+. +..++.+++|||++|.||+++
T Consensus 132 --------------------------------------------~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 132 --------------------------------------------MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred --------------------------------------------CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 11111 12221 234567999999999999999
Q ss_pred HHHHHH
Q psy17467 242 FMQIAA 247 (730)
Q Consensus 242 Fe~Li~ 247 (730)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 130
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.85 E-value=5.5e-21 Score=181.55 Aligned_cols=152 Identities=20% Similarity=0.321 Sum_probs=119.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
||+++|.+|||||||+++++++.+ ..+.++.+... ..+.+++ +.+.+||+||+..+...+..+++++|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 699999999999999999998874 44567777444 3445554 789999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHh
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~ 168 (730)
++++.++..+..|+..+.... ..++.|+++++||+|+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~piiiv~nK~D~~~~~--------- 116 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEE------------------------------ELKGVPLLIFANKQDLPGAL--------- 116 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCc------------------------------ccCCCcEEEEeeccCCcccc---------
Confidence 999999999988888875532 12578899999999985311
Q ss_pred hhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChHHHHH
Q psy17467 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 169 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVeeLFe 243 (730)
..++..+. +....++++++||++|.|++++|+
T Consensus 117 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 117 -------------------------------------------SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred -------------------------------------------CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 11111111 123456899999999999999999
Q ss_pred HHHH
Q psy17467 244 QIAA 247 (730)
Q Consensus 244 ~Li~ 247 (730)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9864
No 131
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=4.4e-20 Score=182.36 Aligned_cols=117 Identities=17% Similarity=0.252 Sum_probs=94.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+..+||+++|.+|||||||++++.++.+.. +.||.+.. ...+.+++ +.+.+||++|+..+..++..+++++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 455899999999999999999999887653 44665532 33445555 78999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
+|+|++++.+++....|+.++.+.. ...+.|+++|+||.|+.
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~------------------------------~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDE------------------------------ELATVPFLILGNKIDAP 131 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCh------------------------------hhcCCCEEEEEeCcccc
Confidence 9999999999988888877764321 11467899999999985
No 132
>PTZ00099 rab6; Provisional
Probab=99.84 E-value=6.7e-20 Score=181.29 Aligned_cols=141 Identities=40% Similarity=0.651 Sum_probs=124.3
Q ss_pred CCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHh
Q psy17467 30 GVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109 (730)
Q Consensus 30 ~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~ 109 (730)
+.|...+.||+|.++..+.+.+++..+.+.||||+|++++..++..++++||++|+|||++++.||+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999986542
Q ss_pred cccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcc
Q psy17467 110 SFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASL 189 (730)
Q Consensus 110 ~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~ 189 (730)
.+++|++|||||+||.+
T Consensus 83 -------------------------------~~~~piilVgNK~DL~~-------------------------------- 99 (176)
T PTZ00099 83 -------------------------------GKDVIIALVGNKTDLGD-------------------------------- 99 (176)
T ss_pred -------------------------------CCCCeEEEEEECccccc--------------------------------
Confidence 14567788888888742
Q ss_pred cCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467 190 EGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251 (730)
Q Consensus 190 ~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e 251 (730)
.+.++.+++..++..+++.|+||||++|.||+++|++|++.+.+
T Consensus 100 ------------------~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 100 ------------------LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ------------------ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 24577888999999999999999999999999999999988744
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=6.5e-20 Score=177.67 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=112.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCc------ceeeEEEEEEE--e---CCeEEEEEEEeCCCchhhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV-------FPPGQGAT------IGVDFMIKTVE--I---NNERIKLQIWDTAGQERFR 70 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~-------f~~~~~pT------ig~d~~~~~i~--v---dg~~v~LqLwDTpG~e~~~ 70 (730)
+|+++|++|||||||+++|++.. +...+.++ .|.++....+. + ++..+.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998732 22222222 23344443333 3 5677899999999999999
Q ss_pred hhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467 71 SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS 150 (730)
Q Consensus 71 sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG 150 (730)
..+..+++.+|++|+|||+++..+++.+..|..... .+.|+++|+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----------------------------------~~~~iiiv~ 126 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----------------------------------NNLEIIPVI 126 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----------------------------------cCCCEEEEE
Confidence 999999999999999999999888877766643221 346778888
Q ss_pred cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC---eE
Q psy17467 151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM---YY 227 (730)
Q Consensus 151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~---~f 227 (730)
||+|+.+. ...+...++++.+++ .+
T Consensus 127 NK~Dl~~~----------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 154 (179)
T cd01890 127 NKIDLPSA----------------------------------------------------DPERVKQQIEDVLGLDPSEA 154 (179)
T ss_pred ECCCCCcC----------------------------------------------------CHHHHHHHHHHHhCCCcccE
Confidence 88887421 011223455556665 38
Q ss_pred EEEecCCCCChHHHHHHHHHHH
Q psy17467 228 LETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 228 vEtSAktG~GVeeLFe~Li~~l 249 (730)
+++||++|.||+++|+++.+.+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhC
Confidence 9999999999999999998654
No 134
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.83 E-value=2e-20 Score=174.51 Aligned_cols=152 Identities=24% Similarity=0.385 Sum_probs=119.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeec
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDI 89 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDv 89 (730)
|+++|++|||||||++++.+..+...+.|+.+.+.. .+..++ +.+.+||++|+..+...+..+++++|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 899999999999999999999999988899886654 344444 7899999999999999999999999999999999
Q ss_pred CCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhh
Q psy17467 90 SCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVF 169 (730)
Q Consensus 90 td~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~ 169 (730)
+++.++..+..|+..+.... ...+.|+++|+||+|+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~p~iiv~nK~D~~~~~~--------- 118 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKP------------------------------SLEGIPLLVLGNKNDLPGALS--------- 118 (159)
T ss_pred CCHHHHHHHHHHHHHHHcCh------------------------------hhcCCCEEEEEeCccccCCcC---------
Confidence 99999988877777764321 114678889999999753110
Q ss_pred hhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HH----HHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 170 VAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-ED----FAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 170 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~----lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.++. .. .....+++++++||++|.|++++|++
T Consensus 119 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 119 -------------------------------------------VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred -------------------------------------------HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 0000 00 01123467999999999999999999
Q ss_pred HHH
Q psy17467 245 IAA 247 (730)
Q Consensus 245 Li~ 247 (730)
+.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 864
No 135
>PLN00023 GTP-binding protein; Provisional
Probab=99.83 E-value=8e-20 Score=196.32 Aligned_cols=133 Identities=24% Similarity=0.430 Sum_probs=109.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC-------------eEEEEEEEeCCCchhhhh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN-------------ERIKLQIWDTAGQERFRS 71 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg-------------~~v~LqLwDTpG~e~~~s 71 (730)
...+||+|+|+.|||||||+++|.++.|...+.+|+|.++..+.+.+++ +.+.++||||+|+++|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3568999999999999999999999999988999999988888787752 568899999999999999
Q ss_pred hhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467 72 ITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD 151 (730)
Q Consensus 72 l~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN 151 (730)
++..+++++|++|+|||++++.||+++..|++++........|.. .+ .....++|++||||
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~-s~------------------~~~~~~ipIILVGN 159 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLG-SG------------------GPGGLPVPYIVIGN 159 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccc-cc------------------cccCCCCcEEEEEE
Confidence 999999999999999999999999999999999976531100000 00 00013578899999
Q ss_pred CCCcc
Q psy17467 152 KTDLD 156 (730)
Q Consensus 152 K~DL~ 156 (730)
|+||.
T Consensus 160 K~DL~ 164 (334)
T PLN00023 160 KADIA 164 (334)
T ss_pred Ccccc
Confidence 99985
No 136
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=1.5e-19 Score=173.12 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=107.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh---------hhhHhhhcc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR---------SITQSYYRS 79 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~---------sl~~~~~r~ 79 (730)
+|+++|++|||||||+++|++..+.....+..+.+.....+.+++ +.+++|||||..... .........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 699999999999999999999887544333333233333444443 789999999974211 000111123
Q ss_pred ccEEEEEeecCCCCch--hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 80 AHALILVYDISCQPTF--DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 80 ADaIILVyDvtd~eSf--e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
+|++|+|+|++++.++ +....|+..+.... .+.|+++|+||+|+.+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--------------------------------~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--------------------------------KNKPVIVVLNKIDLLT 127 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc--------------------------------CcCCeEEEEEccccCc
Confidence 6899999999988765 55566777765321 3678889999999853
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
.. .+ .+..++++..+.++++|||++|.|
T Consensus 128 ~~--------------------------------------------------~~--~~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 128 FE--------------------------------------------------DL--SEIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred hh--------------------------------------------------hH--HHHHHhhhhccCceEEEEecccCC
Confidence 21 11 113445555567899999999999
Q ss_pred hHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAEL 249 (730)
Q Consensus 238 VeeLFe~Li~~l 249 (730)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 137
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.82 E-value=1.9e-19 Score=177.26 Aligned_cols=160 Identities=25% Similarity=0.410 Sum_probs=124.5
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
.++..+||+++|.+|+|||||++++..+.+.. ..||.|. ....+.+++ +.+.+||++|+..++.+|+.|+.++|+
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~--~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGF--NIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSE--EEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccc--ccceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence 34667999999999999999999999876543 5688874 445666676 789999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|+|.++++.+......+.++.... ...+.|+++++||.|+.+.
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~------------------------------~~~~~piLIl~NK~D~~~~---- 130 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDP------------------------------ELKDIPILILANKQDLPDA---- 130 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSG------------------------------GGTTSEEEEEEESTTSTTS----
T ss_pred eEEEEecccceeecccccchhhhcchh------------------------------hcccceEEEEeccccccCc----
Confidence 999999999998888877777765432 1146788888899987531
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHH------HhcCCeEEEEecCCCC
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFA------KRHDMYYLETSAKASD 236 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la------k~lg~~fvEtSAktG~ 236 (730)
.+.++..... ....+.++.|||++|+
T Consensus 131 ------------------------------------------------~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 131 ------------------------------------------------MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp ------------------------------------------------STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred ------------------------------------------------chhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 1122222111 2334578999999999
Q ss_pred ChHHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAEL 249 (730)
Q Consensus 237 GVeeLFe~Li~~l 249 (730)
|+.+.|+||.+.+
T Consensus 163 Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 GVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC
Confidence 9999999998764
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.82 E-value=1.1e-19 Score=170.13 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=98.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch-----hhhhhhHhhhccccEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE-----RFRSITQSYYRSAHAL 83 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e-----~~~sl~~~~~r~ADaI 83 (730)
||+++|++|||||||+++|.+..+. +.+|.+.++ .+ .+|||||.. .+..+.. .+++||++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999988652 344544322 22 689999973 2333333 58899999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.++.. ..|.+.+ ..|+++|+||+|+.+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~-------------------------------------~~p~ilv~NK~Dl~~------ 102 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF-------------------------------------VKPVIGLVTKIDLAE------ 102 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc-------------------------------------cCCeEEEEEeeccCC------
Confidence 99999999999866 2343221 126677777777742
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF 242 (730)
+.+..++++++++..+. +++++||++|.|++++|
T Consensus 103 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 103 ---------------------------------------------ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred ---------------------------------------------cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 23345677788887776 79999999999999999
Q ss_pred HHHH
Q psy17467 243 MQIA 246 (730)
Q Consensus 243 e~Li 246 (730)
+++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 139
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.82 E-value=2.5e-19 Score=172.62 Aligned_cols=117 Identities=23% Similarity=0.368 Sum_probs=93.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+++|++|||||||++++.+..+.. +.|+.|.+. ..+.+++ ..+.+||++|+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 346899999999999999999999876643 457777433 3455555 67899999999988888899999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
+|+|+++..++.....|+..+.... ...+.|+++++||+|+.
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEE------------------------------KLAGVPVLVFANKQDLA 128 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCh------------------------------hhcCCCEEEEEECCCCc
Confidence 9999999988988877776654321 12457888888999875
No 140
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=3.4e-19 Score=170.71 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch----hhhhhhHhh---hcccc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE----RFRSITQSY---YRSAH 81 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e----~~~sl~~~~---~r~AD 81 (730)
+|+++|++|||||||++++.+........|..+.+.....+.+++ ...+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 589999999999999999997665333223333333334444544 2479999999963 222233343 44699
Q ss_pred EEEEEeecCCC-CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 82 ALILVYDISCQ-PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 82 aIILVyDvtd~-eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
++|+|+|++++ .+++.+..|.+++..... ...+.|+++|+||+|+.+..
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-----------------------------~~~~~p~ivv~NK~Dl~~~~- 130 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNP-----------------------------ELLEKPRIVVLNKIDLLDEE- 130 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCc-----------------------------cccccccEEEEEchhcCCch-
Confidence 99999999999 899999999998865421 01356778888888875311
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-cCCeEEEEecCCCCChH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVE 239 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-lg~~fvEtSAktG~GVe 239 (730)
...+....+... .+.++++|||++|.|++
T Consensus 131 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 160 (170)
T cd01898 131 --------------------------------------------------ELFELLKELLKELWGKPVFPISALTGEGLD 160 (170)
T ss_pred --------------------------------------------------hhHHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence 112333444444 36789999999999999
Q ss_pred HHHHHHHHH
Q psy17467 240 KLFMQIAAE 248 (730)
Q Consensus 240 eLFe~Li~~ 248 (730)
++|+++.+.
T Consensus 161 ~l~~~i~~~ 169 (170)
T cd01898 161 ELLRKLAEL 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998764
No 141
>KOG0073|consensus
Probab=99.81 E-value=5.1e-19 Score=171.28 Aligned_cols=168 Identities=26% Similarity=0.329 Sum_probs=135.0
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
+.++..++|.|+|..|+|||||+++|.+.. .....||.| +..+++.+++ +++++||.+|+...++.|+.||..+|
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccC
Confidence 446678999999999999999999999766 455568888 6778888888 89999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++|+|+|.+|+..++.....+.++.... ++ .+.|+++++||.|+...-+
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~ee-------------------------rl-----aG~~~Lvlank~dl~~~l~- 134 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEE-------------------------RL-----AGAPLLVLANKQDLPGALS- 134 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhh-------------------------hh-----cCCceEEEEecCcCccccC-
Confidence 9999999999999988776666653311 11 4578899999999852100
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCC-hHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIP-TEVGEDFAKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs-~ee~~~lak~lg~~fvEtSAktG~GVee 240 (730)
.+.+. .-+.+++++...++++-|||.+|+++.+
T Consensus 135 ----------------------------------------------~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 135 ----------------------------------------------LEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred ----------------------------------------------HHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 00111 1234566788889999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 241 LFMQIAAELME 251 (730)
Q Consensus 241 LFe~Li~~l~e 251 (730)
-|+++++.+.+
T Consensus 169 gidWL~~~l~~ 179 (185)
T KOG0073|consen 169 GIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 142
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.81 E-value=1.4e-18 Score=160.18 Aligned_cols=157 Identities=27% Similarity=0.414 Sum_probs=126.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|.+|+|||||++++.+..++..+.++++.+.....+.+++..+.+.+||+||+..+...+..+.+.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999998888888998888777788888778999999999999999999999999999999
Q ss_pred eecCCC-CchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 87 YDISCQ-PTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 87 yDvtd~-eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|+... .++.... .|...+..... .+.|+++++||+|+.+.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-------------------------------~~~p~ivv~nK~D~~~~------ 123 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-------------------------------SNVPIILVGNKIDLRDA------ 123 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-------------------------------cCCcEEEEEEcccCCcc------
Confidence 999887 7777665 67766654321 16678888888888531
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+..+....+....+.+++++||++|.|++++|+.
T Consensus 124 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 124 ---------------------------------------------KLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred ---------------------------------------------hhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 12223334444444668999999999999999987
Q ss_pred H
Q psy17467 245 I 245 (730)
Q Consensus 245 L 245 (730)
|
T Consensus 159 l 159 (161)
T TIGR00231 159 V 159 (161)
T ss_pred h
Confidence 6
No 143
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.81 E-value=2.1e-18 Score=172.99 Aligned_cols=180 Identities=37% Similarity=0.563 Sum_probs=137.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++|.++.+...+.++++..+........+..+.+.+|||+|++++..++..|+.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999999999998777777777766678999999999999999999999999999999
Q ss_pred eecCCCCc-hhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 87 YDISCQPT-FDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 87 yDvtd~eS-fe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
||.++..+ ++....|.+.+..... .+.|+++++||+|+.........+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~-------------------------------~~~~iilv~nK~Dl~~~~~~~~~~ 133 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAP-------------------------------DDVPILLVGNKIDLFDEQSSSEEI 133 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCC-------------------------------CCceEEEEecccccccchhHHHHH
Confidence 99999544 5566779999876541 367888999999998653221100
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc---CCeEEEEecC--CCCChHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH---DMYYLETSAK--ASDNVEK 240 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l---g~~fvEtSAk--tG~GVee 240 (730)
.++ ..+.+..+.....+... ...+++|||+ ++.||++
T Consensus 134 -----------------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~ 175 (219)
T COG1100 134 -----------------------------------LNQ---LNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNE 175 (219)
T ss_pred -----------------------------------Hhh---hhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHH
Confidence 000 00122233333333222 3348999999 9999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17467 241 LFMQIAAELMEKLAE 255 (730)
Q Consensus 241 LFe~Li~~l~e~~~~ 255 (730)
+|..+.+.+.+....
T Consensus 176 ~~~~~~~~~~~~~~~ 190 (219)
T COG1100 176 LFKELLRKLLEEIEK 190 (219)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999988654433
No 144
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.80 E-value=6.8e-19 Score=166.73 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC---CCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG---VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~---~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
.|+++|++|||||||+++|++. .+...+.++.+.+.....+.+.+ ...+++|||||++++......+++++|++|+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999963 33333334444455555555552 3679999999999887766778889999999
Q ss_pred EeecCC
Q psy17467 86 VYDISC 91 (730)
Q Consensus 86 VyDvtd 91 (730)
|+|+++
T Consensus 81 V~d~~~ 86 (164)
T cd04171 81 VVAADE 86 (164)
T ss_pred EEECCC
Confidence 999987
No 145
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=5.1e-18 Score=184.21 Aligned_cols=165 Identities=18% Similarity=0.134 Sum_probs=122.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh----hhhhH---hhhcc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF----RSITQ---SYYRS 79 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~----~sl~~---~~~r~ 79 (730)
.-.|+|||.||||||||++++++.+.....+|..+..+....+.+.+ ...+.+||+||..+- ..+.. ..++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 34689999999999999999998776655566666677777777732 246899999997431 12333 34667
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e 159 (730)
++++|+|+|+++.++++++..|.+++..+.. .-.+.|+++|+||+|+.+..
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~-----------------------------~L~~kp~IIV~NKiDL~~~~ 287 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSP-----------------------------ELADKPRILVLNKIDLLDEE 287 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh-----------------------------hcccCCeEEEEECcccCCch
Confidence 9999999999998899999999999876531 01356888888888875321
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChH
Q psy17467 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE 239 (730)
Q Consensus 160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVe 239 (730)
.+..++.+.++...++++++|||++++||+
T Consensus 288 --------------------------------------------------~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 288 --------------------------------------------------EEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred --------------------------------------------------hHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 112233444555667889999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 240 KLFMQIAAELME 251 (730)
Q Consensus 240 eLFe~Li~~l~e 251 (730)
++|++|.+.+.+
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999887743
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=6.5e-18 Score=159.37 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=110.7
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh------hhHhhhc--cccEE
Q psy17467 12 LVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS------ITQSYYR--SAHAL 83 (730)
Q Consensus 12 VLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s------l~~~~~r--~ADaI 83 (730)
++|.+|||||||++++++..+...+.++++.+.....+.+++ ..+.+|||||+..+.. ++..++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999876666667777777777788876 5789999999876653 3556664 99999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|+|++++.+. ..|...+.. .+.|+++|+||+|+.+..
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~----------------------------------~~~~~iiv~NK~Dl~~~~---- 117 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE----------------------------------LGLPVVVALNMIDEAEKR---- 117 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH----------------------------------cCCCEEEEEehhhhcccc----
Confidence 999999875442 233333321 246888888999985311
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+. .+.+.++..++++++++||++|.|++++|+
T Consensus 118 ----------------------------------------------~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 118 ----------------------------------------------GIK-IDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred ----------------------------------------------cch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 111 223566777789999999999999999999
Q ss_pred HHHHHH
Q psy17467 244 QIAAEL 249 (730)
Q Consensus 244 ~Li~~l 249 (730)
.+.+.+
T Consensus 151 ~l~~~~ 156 (158)
T cd01879 151 AIAELA 156 (158)
T ss_pred HHHHHh
Confidence 988753
No 147
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.77 E-value=6.3e-18 Score=168.62 Aligned_cols=156 Identities=22% Similarity=0.196 Sum_probs=112.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhhhhHh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER---------FRSITQS 75 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~---------~~sl~~~ 75 (730)
+..++|+|+|++|||||||++++++..+.....+..+.+.....+.+++. ..+.+|||||..+ +.... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 44589999999999999999999998754443333344455555555543 3689999999732 11111 2
Q ss_pred hhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467 76 YYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL 155 (730)
Q Consensus 76 ~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL 155 (730)
.+.++|++++|+|++++.+++.+..|.+.+.... ..+.|+++|+||+|+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-------------------------------~~~~~viiV~NK~Dl 165 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELG-------------------------------AEDIPMILVLNKIDL 165 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-------------------------------cCCCCEEEEEEcccc
Confidence 3678999999999999999988877777664321 135788889999998
Q ss_pred chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC
Q psy17467 156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS 235 (730)
Q Consensus 156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG 235 (730)
.+... ....+...+.++++|||++|
T Consensus 166 ~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 166 LDDEE-------------------------------------------------------LEERLEAGRPDAVFISAKTG 190 (204)
T ss_pred CChHH-------------------------------------------------------HHHHhhcCCCceEEEEcCCC
Confidence 53210 00334455678999999999
Q ss_pred CChHHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAAE 248 (730)
Q Consensus 236 ~GVeeLFe~Li~~ 248 (730)
.|++++|++|...
T Consensus 191 ~gi~~l~~~L~~~ 203 (204)
T cd01878 191 EGLDELLEAIEEL 203 (204)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 148
>PRK04213 GTP-binding protein; Provisional
Probab=99.75 E-value=5.3e-18 Score=168.58 Aligned_cols=81 Identities=26% Similarity=0.322 Sum_probs=58.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC-----------chhhhhhh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG-----------QERFRSIT 73 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG-----------~e~~~sl~ 73 (730)
...++|+++|++|||||||+++++++.+...+.|+++ +....+.+. .+.+||||| ++.+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4568999999999999999999999887766666554 444444444 489999999 56666666
Q ss_pred Hhhhc-cc---cEEEEEeecCC
Q psy17467 74 QSYYR-SA---HALILVYDISC 91 (730)
Q Consensus 74 ~~~~r-~A---DaIILVyDvtd 91 (730)
..++. .+ +++++|+|.++
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCcc
Confidence 66665 44 56666666543
No 149
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.74 E-value=6.5e-17 Score=154.35 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
.|+|+|++|||||||+++|+++.+...+.++.+.+.....+..+ +....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 38999999999999999999988876655555544444444443 13478999999999999888888999999999999
Q ss_pred ecCCCC
Q psy17467 88 DISCQP 93 (730)
Q Consensus 88 Dvtd~e 93 (730)
|+++..
T Consensus 82 d~~~~~ 87 (168)
T cd01887 82 AADDGV 87 (168)
T ss_pred ECCCCc
Confidence 998854
No 150
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.74 E-value=2e-17 Score=164.43 Aligned_cols=84 Identities=21% Similarity=0.389 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ--GVFPPGQ------------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ 74 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~--~~f~~~~------------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~ 74 (730)
+|+++|.+|||||||+++|++ +.+...+ .++.|.++......++++.+.+++|||||++++...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 5554332 23345555555555655668899999999999999999
Q ss_pred hhhccccEEEEEeecCCC
Q psy17467 75 SYYRSAHALILVYDISCQ 92 (730)
Q Consensus 75 ~~~r~ADaIILVyDvtd~ 92 (730)
.+++++|++++|||+++.
T Consensus 84 ~~~~~~d~~ilV~d~~~~ 101 (194)
T cd01891 84 RVLSMVDGVLLLVDASEG 101 (194)
T ss_pred HHHHhcCEEEEEEECCCC
Confidence 999999999999999874
No 151
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.73 E-value=5.7e-17 Score=181.94 Aligned_cols=151 Identities=22% Similarity=0.213 Sum_probs=115.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh--------hHhh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI--------TQSY 76 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl--------~~~~ 76 (730)
..+||+++|++|||||||+|+|++... .....|..+.++....+.+++ +.+.+|||||..++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998754 334457777788888888887 56799999998654332 2357
Q ss_pred hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
++++|++|+|||++++.+++.. |+..+.. .+.|+++|+||+|+.
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----------------------------------~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK----------------------------------SKKPFILVLNKIDLK 323 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh----------------------------------CCCCEEEEEECccCC
Confidence 8899999999999999888765 6655421 346777888888874
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD 236 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~ 236 (730)
. . +...+++.++++++++||++ .
T Consensus 324 ~---------------------------------------------------~-----~~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 324 I---------------------------------------------------N-----SLEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred C---------------------------------------------------c-----chhhhhhhcCCceEEEEEec-C
Confidence 2 0 12344566778899999998 6
Q ss_pred ChHHHHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAELME 251 (730)
Q Consensus 237 GVeeLFe~Li~~l~e 251 (730)
||+++|+.+.+.+.+
T Consensus 347 gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 347 KIKALVDLLTQKINA 361 (442)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888754
No 152
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.73 E-value=2.1e-17 Score=150.30 Aligned_cols=117 Identities=34% Similarity=0.613 Sum_probs=88.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFP--PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~--~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
||+|+|++|||||||+++|.+..+. ..+.++.+.+.......+......+.+||++|++.+...+..++.++|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22233334445555667777777799999999998888877889999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
||++++.||+.+.+|+..+..... ..+++|+++||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~-----------------------------~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRK-----------------------------RDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHH-----------------------------HSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHc-----------------------------cCCCCCEEEEEeccC
Confidence 999999999998665444433321 125688888899987
No 153
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.73 E-value=2.7e-17 Score=157.82 Aligned_cols=161 Identities=22% Similarity=0.231 Sum_probs=108.7
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchh----hhhhh---HhhhccccEE
Q psy17467 12 LVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQER----FRSIT---QSYYRSAHAL 83 (730)
Q Consensus 12 VLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~----~~sl~---~~~~r~ADaI 83 (730)
++|++|||||||++++++..+.....+..+.+.....+.++ + ..+.+|||||..+ ...+. ..+++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999887533322333334444555565 5 6789999999732 12222 3457789999
Q ss_pred EEEeecCCC------CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 84 ILVYDISCQ------PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 84 ILVyDvtd~------eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
++|+|++++ .+++.+..|..++........ .....+.|+++|+||+|+..
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETI------------------------LGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhH------------------------HHHHhhCCeEEEEEchhcCc
Confidence 999999998 578888888887754321000 00013678888889999864
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
... .........+...+..+++|||++|.|
T Consensus 135 ~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (176)
T cd01881 135 AEE--------------------------------------------------LEEELVRELALEEGAEVVPISAKTEEG 164 (176)
T ss_pred hhH--------------------------------------------------HHHHHHHHHhcCCCCCEEEEehhhhcC
Confidence 221 111112334445567899999999999
Q ss_pred hHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAE 248 (730)
Q Consensus 238 VeeLFe~Li~~ 248 (730)
++++++.+++.
T Consensus 165 l~~l~~~l~~~ 175 (176)
T cd01881 165 LDELIRAIYEL 175 (176)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 154
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.72 E-value=1.4e-16 Score=144.40 Aligned_cols=154 Identities=44% Similarity=0.762 Sum_probs=119.2
Q ss_pred EEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC
Q psy17467 12 LVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS 90 (730)
Q Consensus 12 VLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt 90 (730)
|+|.+|+|||||++++.+... .....++. .+.........+....+.+||++|...+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 45555555 6777777777777889999999999888888888999999999999999
Q ss_pred CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhh
Q psy17467 91 CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFV 170 (730)
Q Consensus 91 d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~ 170 (730)
++.+++.+..|....... ....+.|+++++||.|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ivv~nk~D~~~~~~---------- 119 (157)
T cd00882 80 DRESFENVKEWLLLILIN------------------------------KEGENIPIILVGNKIDLPEERV---------- 119 (157)
T ss_pred CHHHHHHHHHHHHHHHHh------------------------------hccCCCcEEEEEeccccccccc----------
Confidence 999998888774222211 1236788888999999864211
Q ss_pred hhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChH-HHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 171 AVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTE-VGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 171 a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~e-e~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.... .........+++++++||+++.|++++++++.
T Consensus 120 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 120 ----------------------------------------VSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ----------------------------------------hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 0011 13344555678999999999999999999875
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=1e-16 Score=181.18 Aligned_cols=154 Identities=23% Similarity=0.207 Sum_probs=109.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhhhhHhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--------FRSITQSYY 77 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--------~~sl~~~~~ 77 (730)
..+|+|+|.+|||||||+|+|++..+. ....|+++.+.....+.+++ ..+.+|||||.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987643 34556666666666677777 4588999999752 333455678
Q ss_pred ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
+.||++|+|||+++..++.. ..|...+.. .+.|+++|+||+|+..
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----------------------------------~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR----------------------------------SGKPVILAANKVDDER 160 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH----------------------------------cCCCEEEEEECccCCc
Confidence 99999999999999877653 234333321 3578888888888742
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
. ..+..+.++..++ ..++|||++|.|
T Consensus 161 ~-----------------------------------------------------~~~~~~~~~~g~~-~~~~iSA~~g~g 186 (472)
T PRK03003 161 G-----------------------------------------------------EADAAALWSLGLG-EPHPVSALHGRG 186 (472)
T ss_pred c-----------------------------------------------------chhhHHHHhcCCC-CeEEEEcCCCCC
Confidence 1 0111222222333 346999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAELME 251 (730)
Q Consensus 238 VeeLFe~Li~~l~e 251 (730)
|+++|+.++..+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999987743
No 156
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.72 E-value=1e-16 Score=173.60 Aligned_cols=162 Identities=18% Similarity=0.181 Sum_probs=119.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh----hhhHhh---hcc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR----SITQSY---YRS 79 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~----sl~~~~---~r~ 79 (730)
.-.|++||.||||||||++++++.......+|..+..+....+.+++ ...+.+|||||..+.. .+...+ +..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 35799999999999999999998775555445555566666666654 3568999999975321 233444 457
Q ss_pred ccEEEEEeecCCC---CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 80 AHALILVYDISCQ---PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 80 ADaIILVyDvtd~---eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
+|++|+|+|+++. .+++++..|.+++..+.. .-.+.|+++|+||+|+.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-----------------------------~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-----------------------------ELAEKPRIVVLNKIDLL 286 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-----------------------------hhccCCEEEEEeCccCC
Confidence 9999999999987 678888888888765431 01357888888888885
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD 236 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~ 236 (730)
+.. ...+..+.+++..+.+++++||++++
T Consensus 287 ~~~---------------------------------------------------~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 287 DEE---------------------------------------------------ELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred ChH---------------------------------------------------HHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 321 11234455666778889999999999
Q ss_pred ChHHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAEL 249 (730)
Q Consensus 237 GVeeLFe~Li~~l 249 (730)
||+++|+.+.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 157
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.71 E-value=1.9e-16 Score=172.93 Aligned_cols=154 Identities=21% Similarity=0.197 Sum_probs=110.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhhhhHhh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE---------RFRSITQSY 76 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e---------~~~sl~~~~ 76 (730)
..++|+++|.+|||||||+|+|++..+.....+..+.++....+.+.+. ..+.+|||+|.. .+.+.. ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999998765555555556777777877432 578999999972 222222 24
Q ss_pred hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
+.+||++|+|+|++++.+++.+..|...+.... ..+.|+++|+||+|+.
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-------------------------------~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELG-------------------------------AEDIPQLLVYNKIDLL 314 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc-------------------------------cCCCCEEEEEEeecCC
Confidence 789999999999999998888776665554321 1356788888888875
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD 236 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~ 236 (730)
+.. +...+. ....++++|||++|.
T Consensus 315 ~~~-------------------------------------------------------~v~~~~-~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 315 DEP-------------------------------------------------------RIERLE-EGYPEAVFVSAKTGE 338 (351)
T ss_pred ChH-------------------------------------------------------hHHHHH-hCCCCEEEEEccCCC
Confidence 311 001111 112468999999999
Q ss_pred ChHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAE 248 (730)
Q Consensus 237 GVeeLFe~Li~~ 248 (730)
|++++++.|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999988653
No 158
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.70 E-value=6.2e-17 Score=158.06 Aligned_cols=148 Identities=18% Similarity=0.237 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh------hhhhHhhh--cc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF------RSITQSYY--RS 79 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~------~sl~~~~~--r~ 79 (730)
|+|+++|.||||||||+|++++.+.....+|..+.+.....+.+.+ ..+.++|+||.... ..+...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999988777789888888888898888 67899999996432 22334444 58
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e 159 (730)
.|++|.|.|+++.+ .-.....++.. -+.|+++|.||+|.....
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e----------------------------------~g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLE----------------------------------LGIPVVVVLNKMDEAERK 121 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHH----------------------------------TTSSEEEEEETHHHHHHT
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHH----------------------------------cCCCEEEEEeCHHHHHHc
Confidence 99999999998732 21222233322 356778888888875321
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChH
Q psy17467 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE 239 (730)
Q Consensus 160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVe 239 (730)
--..+...+.+.+|++++.+||++|+|++
T Consensus 122 ---------------------------------------------------g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 122 ---------------------------------------------------GIEIDAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp ---------------------------------------------------TEEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred ---------------------------------------------------CCEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 11234677888899999999999999999
Q ss_pred HHHHHH
Q psy17467 240 KLFMQI 245 (730)
Q Consensus 240 eLFe~L 245 (730)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
No 159
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=4e-16 Score=146.42 Aligned_cols=146 Identities=18% Similarity=0.097 Sum_probs=100.5
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh--------hhHhhhcccc
Q psy17467 11 VLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS--------ITQSYYRSAH 81 (730)
Q Consensus 11 vVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s--------l~~~~~r~AD 81 (730)
+++|.+|||||||++++++.... ....+..+.+.......+++ ..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999986521 12234444455555666666 6799999999876543 3345678999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++++|+|.++..+.... ++....+. .+.|+++|+||+|+.+...
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~---------------------------------~~~piiiv~nK~D~~~~~~- 122 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRK---------------------------------SKKPVILVVNKVDNIKEED- 122 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHh---------------------------------cCCCEEEEEECcccCChHH-
Confidence 99999999876655442 22221111 2368888889988863210
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEK 240 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVee 240 (730)
. .......++ .++++||++|.|+++
T Consensus 123 -----------------------------------------------------~-~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 123 -----------------------------------------------------E-AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred -----------------------------------------------------H-HHHHHhcCCCCeEEEecccCCCHHH
Confidence 0 122234555 789999999999999
Q ss_pred HHHHHHHH
Q psy17467 241 LFMQIAAE 248 (730)
Q Consensus 241 LFe~Li~~ 248 (730)
+|+++++.
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999864
No 160
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.69 E-value=3.2e-16 Score=164.75 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-h-------hhHhhhcc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-S-------ITQSYYRS 79 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-s-------l~~~~~r~ 79 (730)
+|+++|.||||||||+|+|++.++.. ...|.++.+........++ .++.+|||||..... . ....++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 69999999999999999999987643 2333333333332222333 568999999975321 1 12356789
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e 159 (730)
+|++++|+|+++..+++ ..++..+.. .+.|+++|+||+|+.+..
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~----------------------------------~~~p~ilV~NK~Dl~~~~ 123 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN----------------------------------LKRPVVLTRNKLDNKFKD 123 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh----------------------------------cCCCEEEEEECeeCCCHH
Confidence 99999999999877764 333333321 356888888998885311
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCCh
Q psy17467 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNV 238 (730)
Q Consensus 160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GV 238 (730)
. ..+....++...+. .++++||++|.|+
T Consensus 124 ~---------------------------------------------------~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 124 K---------------------------------------------------LLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred H---------------------------------------------------HHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 1 01233344444444 7899999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 239 EKLFMQIAAEL 249 (730)
Q Consensus 239 eeLFe~Li~~l 249 (730)
+++++.+.+.+
T Consensus 153 ~~L~~~l~~~l 163 (270)
T TIGR00436 153 SFLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHHhC
Confidence 99999987655
No 161
>KOG0070|consensus
Probab=99.69 E-value=1.5e-16 Score=157.22 Aligned_cols=163 Identities=23% Similarity=0.348 Sum_probs=125.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
...+|+++|..++||||++.+|..++...+ .||+| +...++.+.+ +.+++||.+|+++++.+|+.|+.+.+++|+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 458999999999999999999999988776 69998 5566777776 899999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|.|.+|++.+..+++.+..+..... -.+.|+++.+||.|+..--+
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~------------------------------l~~~~llv~aNKqD~~~als----- 135 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPE------------------------------LRNAPLLVFANKQDLPGALS----- 135 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcc------------------------------cCCceEEEEechhhccccCC-----
Confidence 9999999999888877776654321 25778888899999853100
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
. ..++..-+..-.......+..|+|.+|+|+.+.++++
T Consensus 136 -~-----------------------------------------~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl 173 (181)
T KOG0070|consen 136 -A-----------------------------------------AEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWL 173 (181)
T ss_pred -H-----------------------------------------HHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHH
Confidence 0 0011111111111234467889999999999999999
Q ss_pred HHHHH
Q psy17467 246 AAELM 250 (730)
Q Consensus 246 i~~l~ 250 (730)
...+.
T Consensus 174 ~~~~~ 178 (181)
T KOG0070|consen 174 SNNLK 178 (181)
T ss_pred HHHHh
Confidence 88773
No 162
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.69 E-value=3.3e-16 Score=151.98 Aligned_cols=138 Identities=19% Similarity=0.178 Sum_probs=95.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh----hhhHhhhccccEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR----SITQSYYRSAHALI 84 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~----sl~~~~~r~ADaII 84 (730)
+|+++|.+|||||||++++.+.. ... .++. .+.+++. .+|||||..... ......++.||++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccC-ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999977543 211 1222 2233332 269999973211 11123478999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|+|+++..++.. .|+..+. .+.|+++++||+|+.+
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~~-----------------------------------~~~~ii~v~nK~Dl~~------- 105 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDIG-----------------------------------VSKRQIAVISKTDMPD------- 105 (158)
T ss_pred EEEeCCCcccccC--HHHHhcc-----------------------------------CCCCeEEEEEccccCc-------
Confidence 9999999887733 3433320 2456777788888732
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC--eEEEEecCCCCChHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM--YYLETSAKASDNVEKLF 242 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~--~fvEtSAktG~GVeeLF 242 (730)
...+...++++..++ ++++|||++|+||+++|
T Consensus 106 ----------------------------------------------~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 106 ----------------------------------------------ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred ----------------------------------------------ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 123556677777775 89999999999999999
Q ss_pred HHHHHHH
Q psy17467 243 MQIAAEL 249 (730)
Q Consensus 243 e~Li~~l 249 (730)
+.+.+.+
T Consensus 140 ~~l~~~~ 146 (158)
T PRK15467 140 DYLASLT 146 (158)
T ss_pred HHHHHhc
Confidence 9998776
No 163
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.69 E-value=5.1e-16 Score=150.39 Aligned_cols=170 Identities=22% Similarity=0.148 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC----------------cceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGA----------------TIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI 72 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~p----------------Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl 72 (730)
+|+|+|.+|||||||++++++........+ .++.+.....+.+. ...+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 489999999999999999998776554322 12222223333334 367999999999988888
Q ss_pred hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467 73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK 152 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK 152 (730)
+..+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++++||
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~----------------------------------~~~~i~iv~nK 123 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE----------------------------------GGLPIIVAINK 123 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH----------------------------------CCCCeEEEEEC
Confidence 88999999999999999887654332 23322211 35788999999
Q ss_pred CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467 153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA 232 (730)
Q Consensus 153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA 232 (730)
+|+...+........ ..... ..-......+..+....+.+++++||
T Consensus 124 ~D~~~~~~~~~~~~~-----------------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~v~~~Sa 169 (189)
T cd00881 124 IDRVGEEDLEEVLRE-----------------IKELL-----------------GLIGFISTKEEGTRNGLLVPIVPGSA 169 (189)
T ss_pred CCCcchhcHHHHHHH-----------------HHHHH-----------------ccccccchhhhhcccCCcceEEEEec
Confidence 998742211000000 00000 00000111122223345678999999
Q ss_pred CCCCChHHHHHHHHHHH
Q psy17467 233 KASDNVEKLFMQIAAEL 249 (730)
Q Consensus 233 ktG~GVeeLFe~Li~~l 249 (730)
++|.|++++|+.+.+.+
T Consensus 170 ~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 170 LTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCcCHHHHHHHHHhhC
Confidence 99999999999998765
No 164
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.68 E-value=1.2e-15 Score=142.83 Aligned_cols=146 Identities=21% Similarity=0.227 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh--------hhHhhhc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS--------ITQSYYR 78 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s--------l~~~~~r 78 (730)
++|+++|++|+|||||++++++.... ....+..+.++....+.+++ ..+.+|||||..++.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 23345555555555666665 6789999999754432 1234577
Q ss_pred cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
.+|++++|+|++++.+..+...|.. ..+.|+++|+||+|+.+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------------------------------------~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-------------------------------------PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-------------------------------------hcCCCEEEEEEchhcCCc
Confidence 9999999999999888776553322 146788888899998531
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCCh
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV 238 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GV 238 (730)
. .. .....+.+++++||+++.|+
T Consensus 123 ~--------------------------------------------------~~-------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 123 S--------------------------------------------------EL-------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred c--------------------------------------------------cc-------ccccCCCceEEEECCCCCCH
Confidence 1 00 23344668999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 239 EKLFMQIAAEL 249 (730)
Q Consensus 239 eeLFe~Li~~l 249 (730)
++++++|.+.+
T Consensus 146 ~~l~~~l~~~~ 156 (157)
T cd04164 146 DELKEALLELA 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 165
>PRK15494 era GTPase Era; Provisional
Probab=99.68 E-value=1.1e-15 Score=166.06 Aligned_cols=154 Identities=18% Similarity=0.272 Sum_probs=104.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh-hhhhhH-------h
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQER-FRSITQ-------S 75 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~-~~sl~~-------~ 75 (730)
...++|+++|++|||||||+|+|++..+.. ...+..+.+.....+..++ .++.+|||||..+ +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345799999999999999999999887743 1223333345555666666 5689999999843 222221 3
Q ss_pred hhccccEEEEEeecCCCCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 76 YYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 76 ~~r~ADaIILVyDvtd~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
.+.+||++|+|+|.++ +|..+.. |+..+.. .+.|+++|+||+|
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----------------------------------~~~p~IlViNKiD 171 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS----------------------------------LNIVPIFLLNKID 171 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----------------------------------cCCCEEEEEEhhc
Confidence 4779999999999655 5666643 4444422 1235566778888
Q ss_pred cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEec
Q psy17467 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSA 232 (730)
Q Consensus 155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSA 232 (730)
+.+ . ..+++.+++...+ ..++++||
T Consensus 172 l~~---------------------------------------------------~--~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 172 IES---------------------------------------------------K--YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred Ccc---------------------------------------------------c--cHHHHHHHHHhcCCCcEEEEEec
Confidence 742 1 1234444444443 57999999
Q ss_pred CCCCChHHHHHHHHHHH
Q psy17467 233 KASDNVEKLFMQIAAEL 249 (730)
Q Consensus 233 ktG~GVeeLFe~Li~~l 249 (730)
++|.|++++|++|...+
T Consensus 199 ktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 199 LSGKNIDGLLEYITSKA 215 (339)
T ss_pred cCccCHHHHHHHHHHhC
Confidence 99999999999998765
No 166
>KOG1486|consensus
Probab=99.68 E-value=7.9e-16 Score=158.03 Aligned_cols=245 Identities=18% Similarity=0.156 Sum_probs=195.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH-------hhhccc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ-------SYYRSA 80 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~-------~~~r~A 80 (730)
-+|+++|.|.||||||+..++........+...+.+..+..+.++| ..+++.|.||..+-.+..+ ...+.|
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 5899999999999999999998777666667777788889999999 7799999999754433222 346789
Q ss_pred cEEEEEeecCCCCchh-hhHHHHHHHHHHhcccceEEEEecc---------------CchhhHHHHHhhhcccccCCCCC
Q psy17467 81 HALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGT---------------SGLKIVNEMASAAGLLCTVDPAL 144 (730)
Q Consensus 81 DaIILVyDvtd~eSfe-~L~~wleeI~~~~~~~~piVLVg~k---------------~dl~~~~~i~~~~g~~~~~~~~~ 144 (730)
|.|++|.|.+..+.-. -+...++.+....++..|-+.+..+ .+..-+..++.+|.++++.
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Nae---- 216 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAE---- 216 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccce----
Confidence 9999999999766544 4455677765555555666555443 7778889999999997652
Q ss_pred ceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC
Q psy17467 145 ATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD 224 (730)
Q Consensus 145 PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg 224 (730)
+++-. |.. ..-+++.+.++..|.+++-|-||+| +++-|+..++|+.-+
T Consensus 217 --vl~Re--D~t------------------------~DdfIDvi~gnr~Y~~ClYvYnKID----~vs~eevdrlAr~Pn 264 (364)
T KOG1486|consen 217 --VLFRE--DCT------------------------VDDFIDVIEGNRVYIKCLYVYNKID----QVSIEEVDRLARQPN 264 (364)
T ss_pred --EEEec--CCC------------------------hHHHHHHHhccceEEEEEEEeeccc----eecHHHHHHHhcCCC
Confidence 33322 221 2236778889999999999999999 589999999999877
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhc
Q psy17467 225 MYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKK 303 (730)
Q Consensus 225 ~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~ 303 (730)
- +-+|+.-..|++.+.+.+.+.+ .+.|+|+++++..++-..|.++.++.++.++++. |++
T Consensus 265 s--vViSC~m~lnld~lle~iWe~l-----------------~L~rvYtKk~g~~Pdfdd~~vlr~g~tve~~C~~iHr~ 325 (364)
T KOG1486|consen 265 S--VVISCNMKLNLDRLLERIWEEL-----------------NLVRVYTKKKGQRPDFDDPLVLRKGSTVEDVCHRIHRT 325 (364)
T ss_pred c--EEEEeccccCHHHHHHHHHHHh-----------------ceEEEEecCCCCCCCCCCceEEeCCCcHHHHHHHHHHH
Confidence 6 6678888899999999999998 8999999999998888899999999999999887 888
Q ss_pred CCCCce
Q psy17467 304 FPNIDI 309 (730)
Q Consensus 304 ~p~~~~ 309 (730)
+...|.
T Consensus 326 l~~qfk 331 (364)
T KOG1486|consen 326 LAAQFK 331 (364)
T ss_pred HHHhhc
Confidence 776654
No 167
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.68 E-value=5.9e-16 Score=179.48 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCc------ceeeEEEEEE--Ee---CCeEEEEEEEeCCCchhh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGV-------FPPGQGAT------IGVDFMIKTV--EI---NNERIKLQIWDTAGQERF 69 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~-------f~~~~~pT------ig~d~~~~~i--~v---dg~~v~LqLwDTpG~e~~ 69 (730)
=+|+++|..++|||||+++|+... +...+.++ .|.++....+ .+ ++..+.++||||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998642 22223222 2445544433 33 566789999999999999
Q ss_pred hhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEe
Q psy17467 70 RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALA 149 (730)
Q Consensus 70 ~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLV 149 (730)
...+..+++.||++|+|+|+++..+++....|...+. .+.|+++|
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----------------------------------~~ipiIiV 128 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----------------------------------NDLEIIPV 128 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----------------------------------cCCCEEEE
Confidence 9999999999999999999999888887766654331 34677888
Q ss_pred ccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC---e
Q psy17467 150 SDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM---Y 226 (730)
Q Consensus 150 GNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~---~ 226 (730)
+||+|+.+.. ..+...++++.+++ .
T Consensus 129 iNKiDl~~~~----------------------------------------------------~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 129 INKIDLPSAD----------------------------------------------------PERVKKEIEEVIGLDASE 156 (595)
T ss_pred EECcCCCccC----------------------------------------------------HHHHHHHHHHHhCCCcce
Confidence 8888874210 11222344444554 4
Q ss_pred EEEEecCCCCChHHHHHHHHHHH
Q psy17467 227 YLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 227 fvEtSAktG~GVeeLFe~Li~~l 249 (730)
++++||++|.||+++|+.+++.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999998765
No 168
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.67 E-value=1.2e-15 Score=150.28 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=106.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhhhhH
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ----------ERFRSITQ 74 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~----------e~~~sl~~ 74 (730)
+...+|+++|.+|||||||++++++..+...+.++.+.+.......+ ...+.||||||. +.+..+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 35689999999999999999999988766555566654443333333 267999999994 34444555
Q ss_pred hhhccc---cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467 75 SYYRSA---HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD 151 (730)
Q Consensus 75 ~~~r~A---DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN 151 (730)
.+++.+ +++++|+|.+++.+.... .+...+. ..+.|+++++|
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~----------------------------------~~~~~~iiv~n 143 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK----------------------------------EYGIPVLIVLT 143 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH----------------------------------HcCCcEEEEEE
Confidence 566654 678899998876544331 1111111 03567888899
Q ss_pred CCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEe
Q psy17467 152 KTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETS 231 (730)
Q Consensus 152 K~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtS 231 (730)
|+|+.+.... +...++..+.....+..++++|
T Consensus 144 K~Dl~~~~~~------------------------------------------------~~~~~~i~~~l~~~~~~~~~~S 175 (196)
T PRK00454 144 KADKLKKGER------------------------------------------------KKQLKKVRKALKFGDDEVILFS 175 (196)
T ss_pred CcccCCHHHH------------------------------------------------HHHHHHHHHHHHhcCCceEEEE
Confidence 9998643211 1111233344444467899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17467 232 AKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 232 AktG~GVeeLFe~Li~~l 249 (730)
|++|.|++++|+.+.+.+
T Consensus 176 a~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 176 SLKKQGIDELRAAIAKWL 193 (196)
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999988765
No 169
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.67 E-value=6.1e-16 Score=153.55 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC----CCCCC---CC--CcceeeEEEEEEE----------eCCeEEEEEEEeCCCchh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPG---QG--ATIGVDFMIKTVE----------INNERIKLQIWDTAGQER 68 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~----~f~~~---~~--pTig~d~~~~~i~----------vdg~~v~LqLwDTpG~e~ 68 (730)
++|+++|++|||||||+++|++. .+... .. .|.+..+....+. .++..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999972 12111 11 2333333333332 123357899999999876
Q ss_pred hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEE
Q psy17467 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATAL 148 (730)
Q Consensus 69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVL 148 (730)
+..........+|++++|+|+++..+.+....|. +... .+.|+++
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---------------------------------~~~~~ii 125 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---------------------------------LCKKLIV 125 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---------------------------------cCCCEEE
Confidence 5333334456789999999998865544432221 1110 2457888
Q ss_pred eccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH-----HHH--
Q psy17467 149 ASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED-----FAK-- 221 (730)
Q Consensus 149 VGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~-----lak-- 221 (730)
++||+|+...... ....++..+ +.+
T Consensus 126 v~NK~Dl~~~~~~------------------------------------------------~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 126 VLNKIDLIPEEER------------------------------------------------ERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred EEECcccCCHHHH------------------------------------------------HHHHHHHHHHHHHHHHhcC
Confidence 8999998632210 000111111 111
Q ss_pred hcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 222 RHDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 222 ~lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
..+++++++||++|.|++++++.+.+.+
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2367899999999999999999998776
No 170
>KOG1673|consensus
Probab=99.66 E-value=4.1e-16 Score=150.01 Aligned_cols=169 Identities=29% Similarity=0.473 Sum_probs=142.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||-++|++.+|||||+-+|.++.+...+..+.|..+..+++.+.+..+.+.+||.+|++++..+.+-...++-+|+
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 35789999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
++||++.++++..+.+|+.+.+...+.. -.++||+|.|+.-+
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktA--------------------------------iPilvGTKyD~fi~------ 139 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTA--------------------------------IPILVGTKYDLFID------ 139 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCcc--------------------------------ceEEeccchHhhhc------
Confidence 9999999999999999999987654221 22567888887421
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
+|. +...--..+++.+|+..+++.++||+-...||+.+|..
T Consensus 140 ---------lp~------------------------------e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~ 180 (205)
T KOG1673|consen 140 ---------LPP------------------------------ELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKI 180 (205)
T ss_pred ---------CCH------------------------------HHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHH
Confidence 010 00111235788999999999999999999999999998
Q ss_pred HHHHHH
Q psy17467 245 IAAELM 250 (730)
Q Consensus 245 Li~~l~ 250 (730)
+...+.
T Consensus 181 vlAklF 186 (205)
T KOG1673|consen 181 VLAKLF 186 (205)
T ss_pred HHHHHh
Confidence 877663
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.66 E-value=1.8e-15 Score=143.43 Aligned_cols=155 Identities=23% Similarity=0.194 Sum_probs=102.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh----------hh-hH
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR----------SI-TQ 74 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~----------sl-~~ 74 (730)
.++|+++|++|+|||||++++++..+. ....+..+.+.....+..++ ..+.+|||||..+.. .. ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 378999999999999999999987643 22334444344445566666 447899999964321 11 12
Q ss_pred hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 75 SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 75 ~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
..+..+|++++|+|++++.+.+... ++..+. ..+.|+++++||+|
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----------------------------------~~~~~~iiv~nK~D 124 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL----------------------------------EEGKALVIVVNKWD 124 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH----------------------------------hcCCCEEEEEeccc
Confidence 3567899999999999988765532 222211 13468888899999
Q ss_pred cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH-HHHHHHhc----CCeEEE
Q psy17467 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV-GEDFAKRH----DMYYLE 229 (730)
Q Consensus 155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee-~~~lak~l----g~~fvE 229 (730)
+.+... ...++ ...+.+.+ ++++++
T Consensus 125 l~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 125 LVEKDS--------------------------------------------------KTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred cCCccH--------------------------------------------------HHHHHHHHHHHhhcccccCCceEE
Confidence 864210 00011 11222222 368999
Q ss_pred EecCCCCChHHHHHHHHHH
Q psy17467 230 TSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 230 tSAktG~GVeeLFe~Li~~ 248 (730)
+||++|.|++++++.+.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998753
No 172
>KOG0096|consensus
Probab=99.66 E-value=2.6e-16 Score=155.77 Aligned_cols=160 Identities=30% Similarity=0.585 Sum_probs=137.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+|++++|+.|.|||++++|.+.++|..++.+|+|.+.......-+...+.+..|||+|++.+..+...|+-.+.+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 57999999999999999999999999999999999988877666555557999999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
.||++.+..+.++..|..++.+.+ .++|||++|||.|..+..
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--------------------------------~NiPiv~cGNKvDi~~r~------ 130 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--------------------------------ENIPIVLCGNKVDIKARK------ 130 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--------------------------------cCCCeeeeccceeccccc------
Confidence 999999999999999999998876 568888889999886421
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
+ ....-.+-+..++.|+++||+++.|.+.-|.++
T Consensus 131 ---------------------------------------------~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 131 ---------------------------------------------V-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred ---------------------------------------------c-ccccceeeecccceeEEeecccccccccchHHH
Confidence 1 011122334567899999999999999999999
Q ss_pred HHHH
Q psy17467 246 AAEL 249 (730)
Q Consensus 246 i~~l 249 (730)
.+.+
T Consensus 165 arKl 168 (216)
T KOG0096|consen 165 ARKL 168 (216)
T ss_pred hhhh
Confidence 9877
No 173
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=2.8e-15 Score=167.33 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----hhhhhHhh---hccc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----FRSITQSY---YRSA 80 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----~~sl~~~~---~r~A 80 (730)
-.|++||.||||||||++++++.+.....+|..+..+....+.+++ ...+.+||+||..+ ...+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4799999999999999999998876555556666666666666652 25689999999743 22233444 4569
Q ss_pred cEEEEEeecCCC---CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 81 HALILVYDISCQ---PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 81 DaIILVyDvtd~---eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
+++|+|+|+++. .+++++..|.+++..+.. ...+.|++||+||+|+.+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~-----------------------------~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP-----------------------------RLLERPQIVVANKMDLPE 288 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhch-----------------------------hccCCcEEEEEeCCCCcC
Confidence 999999999865 677788888888765421 013567777777777631
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
..+..+++++.++.+++++||++++|
T Consensus 289 ------------------------------------------------------~~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 289 ------------------------------------------------------AEENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred ------------------------------------------------------CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 12344556666677899999999999
Q ss_pred hHHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAELM 250 (730)
Q Consensus 238 VeeLFe~Li~~l~ 250 (730)
++++++.+.+.+.
T Consensus 315 I~eL~~~L~~~l~ 327 (424)
T PRK12297 315 LDELLYAVAELLE 327 (424)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987763
No 174
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.66 E-value=1.2e-15 Score=171.64 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=111.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh--------hHhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI--------TQSYY 77 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl--------~~~~~ 77 (730)
.++|+++|.+|||||||+|+|++... .....+..+.++....+.+++ ..+.+|||+|..++... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 37999999999999999999998765 344456666677777888877 56899999998654322 22468
Q ss_pred ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
+++|++|+|||++++.++++...|.. ..+.|+++|+||+|+.+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------------------------------------~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-------------------------------------LKDKPVIVVLNKADLTG 335 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-------------------------------------cCCCCcEEEEEhhhccc
Confidence 89999999999999988876543322 14567888888888852
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
.. .+. ...+.+++++||++|.|
T Consensus 336 ~~--------------------------------------------------~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 336 EI--------------------------------------------------DLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred cc--------------------------------------------------hhh--------hccCCceEEEEeeCCCC
Confidence 11 000 23456789999999999
Q ss_pred hHHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAELM 250 (730)
Q Consensus 238 VeeLFe~Li~~l~ 250 (730)
++++++.+.+.+.
T Consensus 358 I~~L~~~L~~~l~ 370 (449)
T PRK05291 358 IDELREAIKELAF 370 (449)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
No 175
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.65 E-value=1.5e-15 Score=149.10 Aligned_cols=91 Identities=21% Similarity=0.308 Sum_probs=64.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhhhhH
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ----------ERFRSITQ 74 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~----------e~~~sl~~ 74 (730)
+...+|+|+|++|||||||++++++..+...+.++.+.+........++ .+.+|||||. ..+..+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 5568999999999999999999998875544445555444444444443 5899999994 23344444
Q ss_pred hhhcc---ccEEEEEeecCCCCchhhh
Q psy17467 75 SYYRS---AHALILVYDISCQPTFDCL 98 (730)
Q Consensus 75 ~~~r~---ADaIILVyDvtd~eSfe~L 98 (730)
.+++. +|++|+|+|++++.+..+.
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~ 119 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDL 119 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHH
Confidence 56654 5899999999886665554
No 176
>PRK11058 GTPase HflX; Provisional
Probab=99.65 E-value=1.8e-15 Score=169.21 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh--hhhhH------hhhcc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF--RSITQ------SYYRS 79 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~--~sl~~------~~~r~ 79 (730)
.+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|..+. ..++. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999998766555566666776667777652 25789999997432 22222 33689
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e 159 (730)
||++|+|+|++++.+++.+..|...+.... ..+.|+++|+||+|+.+..
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~-------------------------------~~~~pvIiV~NKiDL~~~~ 325 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEID-------------------------------AHEIPTLLVMNKIDMLDDF 325 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhc-------------------------------cCCCCEEEEEEcccCCCch
Confidence 999999999999998888765555443321 1356888888888885210
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-EEEEecCCCCCh
Q psy17467 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNV 238 (730)
Q Consensus 160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-fvEtSAktG~GV 238 (730)
. .... ....+.+ ++++||++|.||
T Consensus 326 ~---------------------------------------------------~~~~----~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 326 E---------------------------------------------------PRID----RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred h---------------------------------------------------HHHH----HHhcCCCceEEEeCCCCCCH
Confidence 0 0000 0113444 588999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 239 EKLFMQIAAEL 249 (730)
Q Consensus 239 eeLFe~Li~~l 249 (730)
+++++.+.+.+
T Consensus 351 deL~e~I~~~l 361 (426)
T PRK11058 351 PLLFQALTERL 361 (426)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 177
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.65 E-value=2.3e-15 Score=152.08 Aligned_cols=120 Identities=18% Similarity=0.309 Sum_probs=92.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc-cEEEEEe
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA-HALILVY 87 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A-DaIILVy 87 (730)
+|+++|++|||||||+++|.++.+..++.++ +...........+....+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999887766443 2222222222224457899999999999988888899999 9999999
Q ss_pred ecCCC-CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 88 DISCQ-PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 88 Dvtd~-eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
|+++. .++..+..|+..+..... ...+++|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~----------------------------~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLE----------------------------KVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHh----------------------------hccCCCCEEEEecchhhcc
Confidence 99997 778888888777644321 0126789999999999864
No 178
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=4.1e-15 Score=168.40 Aligned_cols=174 Identities=16% Similarity=0.130 Sum_probs=117.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh----hhhh---Hhhhc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF----RSIT---QSYYR 78 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~----~sl~---~~~~r 78 (730)
...+|+|||.||||||||+|++++.+.....+|..+..+....+.+++ ..+.||||||..+. ..+. -..+.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 345799999999999999999998876665567666677777777777 67999999996321 1122 23467
Q ss_pred cccEEEEEeecCCC----CchhhhHHHHHHHHHHhcc-cceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 79 SAHALILVYDISCQ----PTFDCLTDWLREIEEYASF-KVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 79 ~ADaIILVyDvtd~----eSfe~L~~wleeI~~~~~~-~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
.||++|+|+|+++. ..++++..|..++..+... ..+ .++ ..-.+.|+++|+||+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~-------------------~~~--~~l~~kP~IVVlNKi 294 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGD-------------------LGL--GDLAERPRLVVLNKI 294 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhccccc-------------------chh--hhhcCCCEEEEEECc
Confidence 89999999999863 4566666666666554310 000 000 001356778888888
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK 233 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk 233 (730)
|+.+... + .+.........++++++|||+
T Consensus 295 DL~da~e--------------------------------------------------l-~e~l~~~l~~~g~~Vf~ISA~ 323 (500)
T PRK12296 295 DVPDARE--------------------------------------------------L-AEFVRPELEARGWPVFEVSAA 323 (500)
T ss_pred cchhhHH--------------------------------------------------H-HHHHHHHHHHcCCeEEEEECC
Confidence 8753211 0 111222233457899999999
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q psy17467 234 ASDNVEKLFMQIAAELMEKL 253 (730)
Q Consensus 234 tG~GVeeLFe~Li~~l~e~~ 253 (730)
++.||++++.+|.+.+...+
T Consensus 324 tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 324 SREGLRELSFALAELVEEAR 343 (500)
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999998875543
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=3.4e-15 Score=166.38 Aligned_cols=87 Identities=23% Similarity=0.215 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhhhhHhhhc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--------FRSITQSYYR 78 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--------~~sl~~~~~r 78 (730)
.+|+++|.+|||||||+|+|++.... ....|.++.+.....+.+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 33345666677777778877 7899999999876 2233455688
Q ss_pred cccEEEEEeecCCCCchh
Q psy17467 79 SAHALILVYDISCQPTFD 96 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe 96 (730)
.+|++|+|+|++++.+..
T Consensus 80 ~ad~il~vvd~~~~~~~~ 97 (435)
T PRK00093 80 EADVILFVVDGRAGLTPA 97 (435)
T ss_pred hCCEEEEEEECCCCCCHH
Confidence 999999999998865543
No 180
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.63 E-value=3.6e-15 Score=172.91 Aligned_cols=146 Identities=20% Similarity=0.214 Sum_probs=109.9
Q ss_pred cCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh------hHhhh--ccccEEEE
Q psy17467 14 GNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI------TQSYY--RSAHALIL 85 (730)
Q Consensus 14 G~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl------~~~~~--r~ADaIIL 85 (730)
|++|||||||+|++++..+...+.|+++.+.....+.+++ ..+++|||||+.++... ...++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999888777778888888777888877 45899999999876543 33443 37899999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|+|.++.+. ...+..++. ..+.|+++|+||+|+.+.
T Consensus 79 VvDat~ler---~l~l~~ql~----------------------------------~~~~PiIIVlNK~Dl~~~------- 114 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLL----------------------------------ELGIPMILALNLVDEAEK------- 114 (591)
T ss_pred EecCCcchh---hHHHHHHHH----------------------------------hcCCCEEEEEehhHHHHh-------
Confidence 999987432 112222221 135688888888887421
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
+.+. .+.+++++.+|++++++||++|+|++++|+.+
T Consensus 115 -------------------------------------------~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 115 -------------------------------------------KGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred -------------------------------------------CCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 1222 34678888999999999999999999999999
Q ss_pred HHHH
Q psy17467 246 AAEL 249 (730)
Q Consensus 246 i~~l 249 (730)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8754
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.62 E-value=7.1e-15 Score=163.28 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc--------hhhhhhhHhhhcc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ--------ERFRSITQSYYRS 79 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~--------e~~~sl~~~~~r~ 79 (730)
+|+++|++|||||||+|+|++.... ....|.++.+.....+.+++ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987642 23345566566677777777 56999999996 3344455667899
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e 159 (730)
||++++|+|.++..+..+. .+...+.+ .+.|+++|+||+|+.+.+
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~----------------------------------~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK----------------------------------SGKPVILVANKIDGKKED 123 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH----------------------------------hCCCEEEEEECccCCccc
Confidence 9999999999886554432 12222221 246788888888875211
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCCh
Q psy17467 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNV 238 (730)
Q Consensus 160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GV 238 (730)
. ...+ ...+|+ .++++||++|.|+
T Consensus 124 ---------------------------------------------------~---~~~~-~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 124 ---------------------------------------------------A---VAAE-FYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred ---------------------------------------------------c---cHHH-HHhcCCCCeEEEeCCcCCCh
Confidence 0 1111 235566 6999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 239 EKLFMQIAAEL 249 (730)
Q Consensus 239 eeLFe~Li~~l 249 (730)
+++++.+.+.+
T Consensus 149 ~~ll~~i~~~l 159 (429)
T TIGR03594 149 GDLLDAILELL 159 (429)
T ss_pred HHHHHHHHHhc
Confidence 99999988766
No 182
>KOG4423|consensus
Probab=99.61 E-value=2.4e-17 Score=162.52 Aligned_cols=175 Identities=30% Similarity=0.566 Sum_probs=146.0
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe-EEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-RIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~-~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
..++++|+.|+|+-+||||+++.|+....|...|..|+|+++..+.+.++++ .++++|||++|++++..+..-||+.|+
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 3578999999999999999999999999999999999999999988888765 467999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
+.++|||+++...|+....|.+++.... ........|+|+..||+|...+..
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~---------------------------qLpng~Pv~~vllankCd~e~~a~- 152 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKL---------------------------QLPNGTPVPCVLLANKCDQEKSAK- 152 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcc---------------------------cCCCCCcchheeccchhccChHhh-
Confidence 9999999999999999999999975432 123446677777777777753210
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEK 240 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVee 240 (730)
.--.....++++.+|+ .++|+|+|.+.|++|
T Consensus 153 ------------------------------------------------~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 153 ------------------------------------------------NEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred ------------------------------------------------hhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 0112556778888887 699999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 241 LFMQIAAELMEKL 253 (730)
Q Consensus 241 LFe~Li~~l~e~~ 253 (730)
+.+.+++.++.+.
T Consensus 185 a~r~lVe~~lvnd 197 (229)
T KOG4423|consen 185 AQRELVEKILVND 197 (229)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998875543
No 183
>KOG3883|consensus
Probab=99.61 E-value=9.3e-15 Score=140.47 Aligned_cols=163 Identities=27% Similarity=0.417 Sum_probs=131.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhh-hhhhHhhhccccE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPP--GQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERF-RSITQSYYRSAHA 82 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~--~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~-~sl~~~~~r~ADa 82 (730)
..||+++|..+||||+|+.+++-+...+ .+.||++ |.+...++- .|..-.+.|+||+|...+ ..+-+.|+..+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4799999999999999999998765543 4678887 666666655 344567999999998776 5577889999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
++||||..|++||+.+..+..+|.+... ...+||++.|||.|+.
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~Kd------------------------------KKEvpiVVLaN~rdr~------ 131 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKD------------------------------KKEVPIVVLANKRDRA------ 131 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccc------------------------------cccccEEEEechhhcc------
Confidence 9999999999999988776666665442 2345667777777764
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
..+.+..+.++.||+.-.+..+|++|.....+-+.|
T Consensus 132 --------------------------------------------~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 132 --------------------------------------------EPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred --------------------------------------------cchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 236788899999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy17467 243 MQIAAELM 250 (730)
Q Consensus 243 e~Li~~l~ 250 (730)
..+...+.
T Consensus 168 ~~l~~rl~ 175 (198)
T KOG3883|consen 168 TYLASRLH 175 (198)
T ss_pred HHHHHhcc
Confidence 99987763
No 184
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.61 E-value=1.6e-14 Score=135.36 Aligned_cols=154 Identities=18% Similarity=0.134 Sum_probs=98.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh--------hhHhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS--------ITQSYY 77 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s--------l~~~~~ 77 (730)
..+|+++|.+|||||||++++++....... .+...... ...........+.+|||||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR--IRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece--EEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 478999999999999999999987653222 11121111 1112223346789999999653322 234457
Q ss_pred ccccEEEEEeecCCCCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 78 RSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
..+|++++|+|++++. ..... +...+.. .+.|+++|+||+|+.
T Consensus 81 ~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~----------------------------------~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 81 KDVDLVLFVVDASEPI--GEGDEFILELLKK----------------------------------SKTPVILVLNKIDLV 124 (168)
T ss_pred HhCCEEEEEEECCCcc--CchHHHHHHHHHH----------------------------------hCCCEEEEEEchhcc
Confidence 8999999999999872 22222 2222221 146788888999886
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKAS 235 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG 235 (730)
.... ...+....+.... ..+++++|++++
T Consensus 125 ~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~s~~~~ 154 (168)
T cd04163 125 KDKE--------------------------------------------------DLLPLLEKLKELGPFAEIFPISALKG 154 (168)
T ss_pred ccHH--------------------------------------------------HHHHHHHHHHhccCCCceEEEEeccC
Confidence 2111 1112233344444 358999999999
Q ss_pred CChHHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAAE 248 (730)
Q Consensus 236 ~GVeeLFe~Li~~ 248 (730)
.|++++|+.|.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 9999999998754
No 185
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.61 E-value=1.3e-14 Score=167.89 Aligned_cols=87 Identities=21% Similarity=0.232 Sum_probs=71.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
+..+|+++|.+++|||||+++|.+..+...+.++++.+.....+.+++. ..+.||||||++.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 3468999999999999999999998887766566655555556666542 268999999999999999889999999999
Q ss_pred EeecCCCC
Q psy17467 86 VYDISCQP 93 (730)
Q Consensus 86 VyDvtd~e 93 (730)
|+|+++..
T Consensus 165 VVda~dgv 172 (587)
T TIGR00487 165 VVAADDGV 172 (587)
T ss_pred EEECCCCC
Confidence 99998753
No 186
>KOG0075|consensus
Probab=99.60 E-value=1.6e-15 Score=144.79 Aligned_cols=163 Identities=21% Similarity=0.327 Sum_probs=124.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+.+.++|..++|||||+|....+.+.....||+|. .+..+....+.+.+||.+|+.+|+++|+.|++.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGf----nmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGF----NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccc----eeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 3478999999999999999999999999888899983 333444455899999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|.|+.|++.++..++.+..+..... -.++|+++.|||.|+..--
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~------------------------------l~gip~LVLGnK~d~~~AL------ 138 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPS------------------------------LTGIPLLVLGNKIDLPGAL------ 138 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchh------------------------------hcCCcEEEecccccCcccc------
Confidence 9999999999888877777654331 1568888889999985310
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
.|.|+. .+.+..-.....+..+.+||++..|++.+.+++
T Consensus 139 ------------------------------------~~~~li-----~rmgL~sitdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 139 ------------------------------------SKIALI-----ERMGLSSITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred ------------------------------------cHHHHH-----HHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence 111110 000000011223568999999999999999999
Q ss_pred HHHH
Q psy17467 246 AAEL 249 (730)
Q Consensus 246 i~~l 249 (730)
++..
T Consensus 178 i~hs 181 (186)
T KOG0075|consen 178 IEHS 181 (186)
T ss_pred HHHh
Confidence 8765
No 187
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=2.1e-14 Score=158.95 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----hh---Hhhhccc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----IT---QSYYRSA 80 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----l~---~~~~r~A 80 (730)
-.|+|||.||||||||+|++++.+.....+|.++..+....+.+++ ...+.++||||..+-.+ +. -..++.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4799999999999999999998876666667776666666776653 23589999999753211 12 2357889
Q ss_pred cEEEEEeecC---CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 81 HALILVYDIS---CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 81 DaIILVyDvt---d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
|++++|+|++ +...++++..|+.++..+.. .-.+.|+++|+||+|+..
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~-----------------------------~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSP-----------------------------KLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhh-----------------------------hhcCCCEEEEEeCCccCC
Confidence 9999999998 55677787888888765421 013567888888888753
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKAS 235 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG 235 (730)
... ..+..+++.+..+ ..++.+||+++
T Consensus 290 ~~e---------------------------------------------------l~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 290 EEE---------------------------------------------------AEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred hHH---------------------------------------------------HHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 211 1123344444444 36899999999
Q ss_pred CChHHHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAAEL 249 (730)
Q Consensus 236 ~GVeeLFe~Li~~l 249 (730)
.||+++++.|.+.+
T Consensus 319 ~GIdeLl~~I~~~L 332 (390)
T PRK12298 319 LGVKELCWDLMTFI 332 (390)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998876
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.59 E-value=1.5e-14 Score=167.63 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG---VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~---~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+.|+++|.+++|||||+++|++. .++..+.++++.+.....+.+++ ..+.+||+||+++|.......+.++|++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999963 34445556677677666777776 78999999999999887778889999999
Q ss_pred EEeecCCCC---chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc-eEEeccCCCcchhhH
Q psy17467 85 LVYDISCQP---TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA-TALASDKTDLDEDEH 160 (730)
Q Consensus 85 LVyDvtd~e---Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P-VVLVGNK~DL~~~e~ 160 (730)
+|+|+++.. +++.+. .+.. .+.| +++|+||+|+.+.+.
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~----------------------------------lgi~~iIVVlNK~Dlv~~~~ 120 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL----------------------------------LGIPHTIVVITKADRVNEEE 120 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH----------------------------------cCCCeEEEEEECCCCCCHHH
Confidence 999999843 332221 1110 2345 888899999864321
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc----CCeEEEEecCCCC
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH----DMYYLETSAKASD 236 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l----g~~fvEtSAktG~ 236 (730)
. ....++..++++.. ++++++|||++|.
T Consensus 121 ~------------------------------------------------~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 121 I------------------------------------------------KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred H------------------------------------------------HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 0 01123445555443 5789999999999
Q ss_pred ChHHHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAELM 250 (730)
Q Consensus 237 GVeeLFe~Li~~l~ 250 (730)
||+++++.+...+.
T Consensus 153 GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 153 GIGELKKELKNLLE 166 (581)
T ss_pred CchhHHHHHHHHHH
Confidence 99999998876653
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=3.1e-14 Score=168.54 Aligned_cols=154 Identities=22% Similarity=0.160 Sum_probs=104.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhhhhHhh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--------FRSITQSY 76 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--------~~sl~~~~ 76 (730)
...+|+|+|.+|||||||+|+|++.... ....|+++.+.......+++ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999987652 33446666555555555666 5689999999753 23334567
Q ss_pred hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
++.||++|+|+|+++.....+ ..|...+.. .+.|+++|+||+|+.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~----------------------------------~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR----------------------------------AGKPVVLAVNKIDDQ 396 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh----------------------------------cCCCEEEEEECcccc
Confidence 889999999999986432221 134444321 457888888888874
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD 236 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~ 236 (730)
... ......+...++ ..++|||++|.
T Consensus 397 ~~~-----------------------------------------------------~~~~~~~~lg~~-~~~~iSA~~g~ 422 (712)
T PRK09518 397 ASE-----------------------------------------------------YDAAEFWKLGLG-EPYPISAMHGR 422 (712)
T ss_pred cch-----------------------------------------------------hhHHHHHHcCCC-CeEEEECCCCC
Confidence 210 011122222223 35799999999
Q ss_pred ChHHHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAELM 250 (730)
Q Consensus 237 GVeeLFe~Li~~l~ 250 (730)
||+++|+.+++.+.
T Consensus 423 GI~eLl~~i~~~l~ 436 (712)
T PRK09518 423 GVGDLLDEALDSLK 436 (712)
T ss_pred CchHHHHHHHHhcc
Confidence 99999999998763
No 190
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.57 E-value=3.8e-14 Score=164.67 Aligned_cols=162 Identities=20% Similarity=0.246 Sum_probs=112.9
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcC--CCC-----CCCC------CcceeeEEEEEE--Ee---CCeEEEEEEEe
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG--VFP-----PGQG------ATIGVDFMIKTV--EI---NNERIKLQIWD 62 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~-----~~~~------pTig~d~~~~~i--~v---dg~~v~LqLwD 62 (730)
|.+.+..-+|+|+|..++|||||+.+|+.. .+. ..+. .+.|.+.....+ .+ ++..+.++|||
T Consensus 1 ~~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 1 MMDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred CCccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 344455568999999999999999999862 111 1110 122333333333 33 55678999999
Q ss_pred CCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCC
Q psy17467 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDP 142 (730)
Q Consensus 63 TpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~ 142 (730)
|||+.+|...+..+++.+|++|+|+|+++..+.+....|..... .
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-----------------------------------~ 125 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----------------------------------N 125 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----------------------------------C
Confidence 99999999999999999999999999999877766655543221 3
Q ss_pred CCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh
Q psy17467 143 ALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR 222 (730)
Q Consensus 143 ~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~ 222 (730)
+.|+++|+||+|+.... ..+...++...
T Consensus 126 ~lpiIvViNKiDl~~a~----------------------------------------------------~~~v~~ei~~~ 153 (600)
T PRK05433 126 DLEIIPVLNKIDLPAAD----------------------------------------------------PERVKQEIEDV 153 (600)
T ss_pred CCCEEEEEECCCCCccc----------------------------------------------------HHHHHHHHHHH
Confidence 56778888888874210 01112233333
Q ss_pred cCC---eEEEEecCCCCChHHHHHHHHHHH
Q psy17467 223 HDM---YYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 223 lg~---~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
+++ .++++||++|.||+++++.|++.+
T Consensus 154 lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 154 IGIDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred hCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 444 389999999999999999998766
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.57 E-value=3.1e-14 Score=131.08 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=103.4
Q ss_pred EEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-------hhHhhhccccEE
Q psy17467 12 LVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS-------ITQSYYRSAHAL 83 (730)
Q Consensus 12 VLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-------l~~~~~r~ADaI 83 (730)
++|.+|+|||||++++++.... ....+..+..........+. ...+.+||++|...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987554 33333333334343443331 36799999999765432 334578899999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
++|+|.++..+..... |..... ..+.|+++|+||+|+........
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~----------------------------------~~~~~~ivv~nK~D~~~~~~~~~ 124 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR----------------------------------ERGKPVLLVLNKIDLLPEEEEEE 124 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH----------------------------------hcCCeEEEEEEccccCChhhHHH
Confidence 9999999987776654 222221 14678889999999865321100
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.............+++++++||+++.|++++++
T Consensus 125 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~ 157 (163)
T cd00880 125 -----------------------------------------------LLELRLLILLLLLGLPVIAVSALTGEGIDELRE 157 (163)
T ss_pred -----------------------------------------------HHHHHHhhcccccCCceEEEeeeccCCHHHHHH
Confidence 000112223334467899999999999999999
Q ss_pred HHHHH
Q psy17467 244 QIAAE 248 (730)
Q Consensus 244 ~Li~~ 248 (730)
.+.+.
T Consensus 158 ~l~~~ 162 (163)
T cd00880 158 ALIEA 162 (163)
T ss_pred HHHhh
Confidence 98764
No 192
>KOG0071|consensus
Probab=99.57 E-value=3e-14 Score=135.32 Aligned_cols=156 Identities=21% Similarity=0.382 Sum_probs=122.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.++|+++|..++||||++.++.-+... +..||+| +...++++.+ +.+++||.+|++..+.+|+.||....++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 479999999999999999999977644 4458988 6677888887 8899999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
.|..++...+.++..+..|..+.. -.+.|+++.+||.|+.+-
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~e------------------------------m~~~~~LvlANkQDlp~A-------- 133 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDRE------------------------------MRDAIILILANKQDLPDA-------- 133 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHh------------------------------hhcceEEEEecCcccccc--------
Confidence 999998888888776666654431 135667777888888541
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVeeL 241 (730)
.+..+...+ ++.....+..|||.+|.|+.+-
T Consensus 134 --------------------------------------------~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 134 --------------------------------------------MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred --------------------------------------------cCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 222333322 2223345789999999999999
Q ss_pred HHHHHHHH
Q psy17467 242 FMQIAAEL 249 (730)
Q Consensus 242 Fe~Li~~l 249 (730)
|.++.+.+
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 99998765
No 193
>PRK00089 era GTPase Era; Reviewed
Probab=99.56 E-value=5.3e-14 Score=148.95 Aligned_cols=156 Identities=20% Similarity=0.184 Sum_probs=100.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------hhhHhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--------SITQSYY 77 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--------sl~~~~~ 77 (730)
.-.|+++|++|||||||+|++++...... ..|..+..........++ .++.+|||||..... ......+
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 45799999999999999999998876432 223332222222222233 789999999964322 2223457
Q ss_pred ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
.++|++++|+|+++. +.....++..... ..+.|+++|+||+|+..
T Consensus 83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~---------------------------------~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 83 KDVDLVLFVVDADEK--IGPGDEFILEKLK---------------------------------KVKTPVILVLNKIDLVK 127 (292)
T ss_pred hcCCEEEEEEeCCCC--CChhHHHHHHHHh---------------------------------hcCCCEEEEEECCcCCC
Confidence 899999999999883 2222222221111 13568888899999863
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASD 236 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~ 236 (730)
+.. ...+..+.+.+..+ ..++++||++|.
T Consensus 128 ~~~--------------------------------------------------~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 128 DKE--------------------------------------------------ELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred CHH--------------------------------------------------HHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 211 01123344444444 579999999999
Q ss_pred ChHHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAEL 249 (730)
Q Consensus 237 GVeeLFe~Li~~l 249 (730)
|++++++.+.+.+
T Consensus 158 gv~~L~~~L~~~l 170 (292)
T PRK00089 158 NVDELLDVIAKYL 170 (292)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998765
No 194
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.56 E-value=1.1e-13 Score=139.61 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCcceeeEEEEEEEeC---------------------------C----
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPP---GQGATIGVDFMIKTVEIN---------------------------N---- 53 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~---~~~pTig~d~~~~~i~vd---------------------------g---- 53 (730)
++|+++|..|+|||||+..+.+..... ......+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997542111 000000000100010110 1
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC----chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHH
Q psy17467 54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP----TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNE 129 (730)
Q Consensus 54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e----Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~ 129 (730)
....+.||||||++++.......+..+|++|+|+|++++. +++.+..| ...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~--------------------- 135 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM--------------------- 135 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc---------------------
Confidence 1167899999999988777777788899999999998742 22222211 110
Q ss_pred HHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCC
Q psy17467 130 MASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDR 209 (730)
Q Consensus 130 i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R 209 (730)
...|+++|+||+|+.......
T Consensus 136 ------------~~~~iiivvNK~Dl~~~~~~~----------------------------------------------- 156 (203)
T cd01888 136 ------------GLKHIIIVQNKIDLVKEEQAL----------------------------------------------- 156 (203)
T ss_pred ------------CCCcEEEEEEchhccCHHHHH-----------------------------------------------
Confidence 113678889999986422100
Q ss_pred CCChHHHHHHHHh---cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 210 EIPTEVGEDFAKR---HDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 210 ~Vs~ee~~~lak~---lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
...++.++++.. .+++++++||++|.||+++|+.+.+.+
T Consensus 157 -~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 157 -ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred -HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 011233344433 256899999999999999999998654
No 195
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.56 E-value=3.7e-14 Score=168.24 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=70.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
+.-.|+|+|..++|||||+++|.++.+.....+.++.+.....+.+++ ..+.||||||++.|..++...+..+|++||
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 446799999999999999999998877665555555444445566666 678999999999999999889999999999
Q ss_pred EeecCCCC
Q psy17467 86 VYDISCQP 93 (730)
Q Consensus 86 VyDvtd~e 93 (730)
|||+++..
T Consensus 367 VVdAddGv 374 (787)
T PRK05306 367 VVAADDGV 374 (787)
T ss_pred EEECCCCC
Confidence 99998853
No 196
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.55 E-value=6.1e-14 Score=131.92 Aligned_cols=152 Identities=19% Similarity=0.261 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch----------hhhhhhHhhhc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE----------RFRSITQSYYR 78 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e----------~~~sl~~~~~r 78 (730)
+|+++|++|||||||++.++++.+.....++.+.+.....+..++ .+.+|||||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999997666665556666555444554444 78999999842 23444445554
Q ss_pred ---cccEEEEEeecCCCCchh--hhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 79 ---SAHALILVYDISCQPTFD--CLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 79 ---~ADaIILVyDvtd~eSfe--~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
+.+++++|+|.++..+.. .+..|+.. .+.|+++++||+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------------------------------------~~~~vi~v~nK~ 120 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------------------------------------LGIPFLVVLTKA 120 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------------------------------------cCCCEEEEEEch
Confidence 457899999988754322 22223222 236788888999
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH--hcCCeEEEEe
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK--RHDMYYLETS 231 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak--~lg~~fvEtS 231 (730)
|+...+... ..........+ ....+++++|
T Consensus 121 D~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 121 DKLKKSELA------------------------------------------------KALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hcCChHHHH------------------------------------------------HHHHHHHHHHHhccCCCceEEEe
Confidence 985432110 01112222222 3346799999
Q ss_pred cCCCCChHHHHHHHHHH
Q psy17467 232 AKASDNVEKLFMQIAAE 248 (730)
Q Consensus 232 AktG~GVeeLFe~Li~~ 248 (730)
|+++.|++++++.+.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 197
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.55 E-value=9.1e-14 Score=165.29 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=111.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh----------hHhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI----------TQSY 76 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl----------~~~~ 76 (730)
.++|+++|.||||||||+|++++........|.++.+.....+..++ ..+++|||||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence 37899999999999999999998877666666666655555555544 77999999998765421 2233
Q ss_pred h--ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 77 Y--RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 77 ~--r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
+ ..+|++|+|+|.++.+.- ..|..++.+ .+.|++++.||+|
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----------------------------------~giPvIvVlNK~D 123 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE----------------------------------LGIPCIVALNMLD 123 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH----------------------------------cCCCEEEEEEchh
Confidence 3 479999999999885432 223333322 2467788888888
Q ss_pred cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC
Q psy17467 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA 234 (730)
Q Consensus 155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt 234 (730)
+.+ ++.+ ..+.+++++.+|++++++||++
T Consensus 124 l~~--------------------------------------------------~~~i-~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 124 IAE--------------------------------------------------KQNI-RIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred hhh--------------------------------------------------ccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence 742 1122 3456778889999999999999
Q ss_pred CCChHHHHHHHHHHH
Q psy17467 235 SDNVEKLFMQIAAEL 249 (730)
Q Consensus 235 G~GVeeLFe~Li~~l 249 (730)
|+|++++.+.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999998887643
No 198
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.54 E-value=8.5e-14 Score=164.05 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=69.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceee--EEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVD--FMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d--~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
....|+|+|..++|||||+++|.+..+.....++++.+ .+...+..++....+.||||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 34589999999999999999999887765443333322 2333344445568899999999999999999999999999
Q ss_pred EEEeecCCCCc
Q psy17467 84 ILVYDISCQPT 94 (730)
Q Consensus 84 ILVyDvtd~eS 94 (730)
|||+|+++...
T Consensus 323 ILVVDA~dGv~ 333 (742)
T CHL00189 323 ILIIAADDGVK 333 (742)
T ss_pred EEEEECcCCCC
Confidence 99999988543
No 199
>KOG0076|consensus
Probab=99.50 E-value=4.2e-14 Score=138.57 Aligned_cols=164 Identities=25% Similarity=0.379 Sum_probs=120.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcC-------CCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQG-------VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYY 77 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~-------~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~ 77 (730)
+-.+.|+|+|..++|||||+.+.... -.+....||+|.. ..++.+.+ ..+.+||.+|++..+++|..||
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn--ig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN--IGTIEVCN--APLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee--ecceeecc--ceeEEEEcCChHHHHHHHHHHH
Confidence 34478999999999999999887532 1123345777744 44555554 6799999999999999999999
Q ss_pred ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
..|+++|+|+|++|++-|+....-++.+..+.. -.++|+++.+||.|+.+
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~------------------------------leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEK------------------------------LEGAPVLVLANKQDLQN 140 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHH------------------------------hcCCchhhhcchhhhhh
Confidence 999999999999999999988776666655431 15678888888888864
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH---hcCCeEEEEecCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK---RHDMYYLETSAKA 234 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak---~lg~~fvEtSAkt 234 (730)
..... .+ ...-.++. ...++|..|||.+
T Consensus 141 ~~~~~-----------------------------------------------El--~~~~~~~e~~~~rd~~~~pvSal~ 171 (197)
T KOG0076|consen 141 AMEAA-----------------------------------------------EL--DGVFGLAELIPRRDNPFQPVSALT 171 (197)
T ss_pred hhhHH-----------------------------------------------HH--HHHhhhhhhcCCccCccccchhhh
Confidence 22110 00 00111122 2346799999999
Q ss_pred CCChHHHHHHHHHHHHH
Q psy17467 235 SDNVEKLFMQIAAELME 251 (730)
Q Consensus 235 G~GVeeLFe~Li~~l~e 251 (730)
|+||++..+|+++.+.+
T Consensus 172 gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 172 GEGVKEGIEWLVKKLEK 188 (197)
T ss_pred cccHHHHHHHHHHHHhh
Confidence 99999999999988743
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.49 E-value=2.5e-13 Score=157.36 Aligned_cols=84 Identities=25% Similarity=0.273 Sum_probs=61.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC----CCcceeeEEEEEEE------------eCCeEEEEEEEeCCCchhhhhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ----GATIGVDFMIKTVE------------INNERIKLQIWDTAGQERFRSI 72 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~----~pTig~d~~~~~i~------------vdg~~v~LqLwDTpG~e~~~sl 72 (730)
-|+++|.+|+|||||+++|++..+.... ..++|..+...... ++.....+.||||||++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 3899999999999999999988765432 23333322211110 0001123889999999999999
Q ss_pred hHhhhccccEEEEEeecCCC
Q psy17467 73 TQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd~ 92 (730)
+..+++.+|++|+|||+++.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g 105 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEG 105 (590)
T ss_pred HHHHHhhCCEEEEEEECCcC
Confidence 99999999999999999974
No 201
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.48 E-value=2.7e-13 Score=149.93 Aligned_cols=148 Identities=20% Similarity=0.158 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--h-------hhHhhh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--S-------ITQSYY 77 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--s-------l~~~~~ 77 (730)
-.|+|||.||||||||+|||++.+.. +...|.++.|.......+.+ ..+.++||+|.+... . .....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 46999999999999999999987654 45668888888888888888 459999999976322 1 123457
Q ss_pred ccccEEEEEeecCCCCchh--hhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467 78 RSAHALILVYDISCQPTFD--CLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL 155 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe--~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL 155 (730)
..||++|||+|....-+-+ .+.+|+.. .+.|+++|.||+|.
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~-------------------------------------~~kpviLvvNK~D~ 124 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRR-------------------------------------SKKPVILVVNKIDN 124 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHh-------------------------------------cCCCEEEEEEcccC
Confidence 8999999999998744433 33333321 35678888888887
Q ss_pred chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCC
Q psy17467 156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKA 234 (730)
Q Consensus 156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAkt 234 (730)
...+ +.+.+ .-.+|. ..+.+||..
T Consensus 125 ~~~e------------------------------------------------------~~~~e-fyslG~g~~~~ISA~H 149 (444)
T COG1160 125 LKAE------------------------------------------------------ELAYE-FYSLGFGEPVPISAEH 149 (444)
T ss_pred chhh------------------------------------------------------hhHHH-HHhcCCCCceEeehhh
Confidence 4211 12222 235565 689999999
Q ss_pred CCChHHHHHHHHHHH
Q psy17467 235 SDNVEKLFMQIAAEL 249 (730)
Q Consensus 235 G~GVeeLFe~Li~~l 249 (730)
|.|+.+|.+.++..+
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999999876
No 202
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.48 E-value=4.6e-13 Score=148.69 Aligned_cols=83 Identities=25% Similarity=0.299 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe---------------------C-CeEEEEEEEeCCC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI---------------------N-NERIKLQIWDTAG 65 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v---------------------d-g~~v~LqLwDTpG 65 (730)
++|++||.||||||||+|++++..+....+|..+.++......+ + ...+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999998876655555554454444332 1 1236799999999
Q ss_pred ch----hhhhhhHhh---hccccEEEEEeecC
Q psy17467 66 QE----RFRSITQSY---YRSAHALILVYDIS 90 (730)
Q Consensus 66 ~e----~~~sl~~~~---~r~ADaIILVyDvt 90 (730)
.. ....+...+ +++||++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 334455555 88999999999997
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.48 E-value=2.9e-13 Score=151.12 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=60.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCC-------------------------------CCCCcceeeEEEEEEEeCC
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-------------------------------GQGATIGVDFMIKTVEINN 53 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-------------------------------~~~pTig~d~~~~~i~vdg 53 (730)
+..++|+++|.+++|||||+++|+...-.. ...+.++.+. ....++.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~--~~~~~~~ 81 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDL--AHKKFET 81 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCcccee--eeEEEec
Confidence 345999999999999999999998421110 0022333333 3333444
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467 54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~ 92 (730)
..+.+.||||||+++|.......+..+|++|+|+|++++
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~ 120 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA 120 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC
Confidence 458899999999988765444557899999999999874
No 204
>KOG1707|consensus
Probab=99.47 E-value=3.3e-14 Score=159.78 Aligned_cols=190 Identities=24% Similarity=0.336 Sum_probs=129.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|+.|||||||+-.++..+|++...+-.. ....-..+....+...+.|++...+-+.....-++.||+|.+|
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv 86 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLV 86 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence 48999999999999999999999999877644443 1111122223346689999986555444446778999999999
Q ss_pred eecCCCCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 87 YDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 87 yDvtd~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|+++++++++.++. |+..+++..+ ...++||||||||+|+.+...
T Consensus 87 yavd~~~T~D~ist~WLPlir~~~~-----------------------------~~~~~PVILvGNK~d~~~~~~----- 132 (625)
T KOG1707|consen 87 YAVDDESTVDRISTKWLPLIRQLFG-----------------------------DYHETPVILVGNKSDNGDNEN----- 132 (625)
T ss_pred EecCChHHhhhhhhhhhhhhhcccC-----------------------------CCccCCEEEEeeccCCccccc-----
Confidence 99999999999965 9999987532 346899999999999986431
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
+ .|. ....--..+++..- ..++|||++..|+.++|...
T Consensus 133 ------------------------------------~-s~e---~~~~pim~~f~EiE--tciecSA~~~~n~~e~fYya 170 (625)
T KOG1707|consen 133 ------------------------------------N-SDE---VNTLPIMIAFAEIE--TCIECSALTLANVSELFYYA 170 (625)
T ss_pred ------------------------------------c-chh---HHHHHHHHHhHHHH--HHHhhhhhhhhhhHhhhhhh
Confidence 0 000 00111122222222 25999999999999999999
Q ss_pred HHHHHHHHHH----Hhhhccccccccchhhhcc
Q psy17467 246 AAELMEKLAE----KLTIMHDRGVGMLTRIYNI 274 (730)
Q Consensus 246 i~~l~e~~~~----~~~~~~~~~~~~l~riy~~ 274 (730)
.++++..... .......+....+.||+..
T Consensus 171 qKaVihPt~PLyda~~qelkp~~v~al~RIFki 203 (625)
T KOG1707|consen 171 QKAVIHPTSPLYDAEEQELKPRCVKALKRIFKI 203 (625)
T ss_pred hheeeccCccccccccccccHHHHHHHHHHHhh
Confidence 9888654322 2222333344455555543
No 205
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.46 E-value=8.7e-13 Score=147.46 Aligned_cols=93 Identities=19% Similarity=0.218 Sum_probs=68.0
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHc--CCCCC-----------------------------CCCCcceeeEEEEEE
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQ--GVFPP-----------------------------GQGATIGVDFMIKTV 49 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~--~~f~~-----------------------------~~~pTig~d~~~~~i 49 (730)
|...+..++|+++|..++|||||+.+|+. +.... .....++.+.....+
T Consensus 1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~ 80 (426)
T TIGR00483 1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF 80 (426)
T ss_pred CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence 55567789999999999999999999985 22110 011234444444444
Q ss_pred EeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCch
Q psy17467 50 EINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTF 95 (730)
Q Consensus 50 ~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSf 95 (730)
..+ .+.+.||||||+++|.......+..+|++|+|+|+++.+++
T Consensus 81 ~~~--~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~ 124 (426)
T TIGR00483 81 ETD--KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124 (426)
T ss_pred ccC--CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence 444 47899999999988876555667899999999999998654
No 206
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.45 E-value=1.1e-12 Score=145.50 Aligned_cols=151 Identities=20% Similarity=0.200 Sum_probs=110.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh--------Hhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT--------QSYY 77 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~--------~~~~ 77 (730)
-+|++++|.||||||||+|.|++.+. .++..|.++.|.....+.++| +.+.++||+|.++-.... ...+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 37999999999999999999998765 566778888888888999999 889999999986544333 3458
Q ss_pred ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
..||.+++|+|.+.+.+-++.. .++ ....+.|+++|.||.||..
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~-~~~-----------------------------------~~~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLA-LIE-----------------------------------LLPKKKPIIVVLNKADLVS 338 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHH-HHH-----------------------------------hcccCCCEEEEEechhccc
Confidence 8999999999999863332221 111 1125677888888888853
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
.. + ...+.-..+.+++.+||++|+|
T Consensus 339 ~~---------------------------------------------~----------~~~~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 339 KI---------------------------------------------E----------LESEKLANGDAIISISAKTGEG 363 (454)
T ss_pred cc---------------------------------------------c----------cchhhccCCCceEEEEecCccC
Confidence 11 0 0001112233689999999999
Q ss_pred hHHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAELM 250 (730)
Q Consensus 238 VeeLFe~Li~~l~ 250 (730)
++.+-+.|.+.+.
T Consensus 364 l~~L~~~i~~~~~ 376 (454)
T COG0486 364 LDALREAIKQLFG 376 (454)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887763
No 207
>KOG0074|consensus
Probab=99.44 E-value=4.8e-13 Score=127.36 Aligned_cols=119 Identities=26% Similarity=0.415 Sum_probs=96.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
..+.+||.++|..|+|||||+.++..... ....||-| +..+.+.+++ .+.+++||.+|+...+.+|..||.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence 35679999999999999999999986653 33447777 6778888876 47899999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
|+|+|.+|..-|+.+.+.+-++..-. .+ ...|+.+..||.|+.
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleee-------------------------Kl-----~~vpvlIfankQdll 132 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEE-------------------------KL-----AEVPVLIFANKQDLL 132 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhh-------------------------hh-----hccceeehhhhhHHH
Confidence 99999999999998876555543321 11 456778888888875
No 208
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.43 E-value=1.8e-12 Score=134.53 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=65.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--------C-----CCC---CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFP--------P-----GQG---ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI 72 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~--------~-----~~~---pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl 72 (730)
+|+++|..|+|||||+++++...-. . .+. ...+.+.......+......+.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999853110 0 000 11122222333333334488999999999999888
Q ss_pred hHhhhccccEEEEEeecCCCCchhhhHHHHHHH
Q psy17467 73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI 105 (730)
+..+++.+|++|+|+|+++..+.+ ...|+..+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~ 112 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLL 112 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHH
Confidence 889999999999999999865432 23344443
No 209
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.43 E-value=8.5e-13 Score=130.96 Aligned_cols=161 Identities=24% Similarity=0.268 Sum_probs=105.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC------------------CCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ------------------GATIGVDFMIKTVEINNERIKLQIWDTAGQE 67 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~------------------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e 67 (730)
..++|+++|..++|||||+.+|+........ ....+.+.....+..+.....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3579999999999999999999853321110 0112222223333312334789999999999
Q ss_pred hhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceE
Q psy17467 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATA 147 (730)
Q Consensus 68 ~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVV 147 (730)
+|.......+..+|++|+|+|+.+...-+. .+.+..+.. .+.|++
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~----------------------------------~~~p~i 126 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE----------------------------------LGIPII 126 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH----------------------------------TT-SEE
T ss_pred ceeecccceecccccceeeeeccccccccc-ccccccccc----------------------------------cccceE
Confidence 988877788999999999999987644332 222222221 456788
Q ss_pred EeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc----
Q psy17467 148 LASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH---- 223 (730)
Q Consensus 148 LVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l---- 223 (730)
++.||+|+.+.+- . .+..+....+.+..
T Consensus 127 vvlNK~D~~~~~~-~-----------------------------------------------~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 127 VVLNKMDLIEKEL-E-----------------------------------------------EIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp EEEETCTSSHHHH-H-----------------------------------------------HHHHHHHHHHHHHTTSTT
T ss_pred EeeeeccchhhhH-H-----------------------------------------------HHHHHHHHHhccccccCc
Confidence 8999999973211 0 00111112333333
Q ss_pred --CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 224 --DMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 224 --g~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.++++++||++|.|++++++.+.+.+
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999998765
No 210
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.43 E-value=6.3e-13 Score=134.50 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=58.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC-------------------------------CCCcceeeEEEEEEEeCCeEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPG-------------------------------QGATIGVDFMIKTVEINNERIK 57 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~-------------------------------~~pTig~d~~~~~i~vdg~~v~ 57 (730)
||+|+|.+|+|||||+++|+...-... ....++.+.....+.+++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 589999999999999999975321111 002223333333344444 57
Q ss_pred EEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 58 LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
+.||||||+.++.......++.+|++|+|+|+++..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~ 114 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGV 114 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc
Confidence 889999999887665666788999999999998753
No 211
>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling. It associates preferentially with the first SH3 domain of Nck and is a component of the WAVE2 complex composed of ABI1, CYFIP1/SRA1, NCKAP1/NAP1 and WASF2/WAVE2. It is also a component of the WAVE1 complex composed of ABI2, CYFIP2, C3orf10/HSPC300, NCKAP1 and WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The complex can also be activated by NCK1. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease [].; PDB: 3P8C_B.
Probab=99.42 E-value=1.9e-14 Score=175.00 Aligned_cols=88 Identities=70% Similarity=1.114 Sum_probs=72.5
Q ss_pred HHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCcee--eeccccccchhhHHHhHhhhh
Q psy17467 254 AEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIK--SVSGISQIRSDIVKSLSLYYY 331 (730)
Q Consensus 254 ~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~--~~~~~~~~~~~~~~~l~~~~~ 331 (730)
.++.....+++.|.++|+|+.++.|++.+++|.++.++.....++.+.|+||..+.+ ....++....+|++.|++||+
T Consensus 7 aEkl~iln~r~~g~l~rlynikk~~~~~k~kp~fl~dK~~e~~~K~i~kkfp~id~~~~~~~~~~~~~~e~~~~L~~~Y~ 86 (1116)
T PF09735_consen 7 AEKLTILNDRGEGMLTRLYNIKKACGDPKSKPSFLSDKFIESAIKYIVKKFPNIDIRSNGLEPLQNRKKEILKSLSPYYY 86 (1116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTS-GGGT-TTTHHHHHHHHHHTT-------TTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhccChHhhhcCCCCCCccccccChHHHHHHHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 344455667788999999999999999999999999999999999999999999999 666788889999999999999
Q ss_pred hhhccCCcee
Q psy17467 332 TFVDLLHFKD 341 (730)
Q Consensus 332 ~~~~~~~~~~ 341 (730)
+|+|+++|.+
T Consensus 87 tf~D~~df~d 96 (1116)
T PF09735_consen 87 TFVDLMDFRD 96 (1116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 212
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.42 E-value=3.2e-12 Score=129.60 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC-----------------CCcceeeEEEEEEE--e---CCeEEEEEEEeCCCc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ-----------------GATIGVDFMIKTVE--I---NNERIKLQIWDTAGQ 66 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~-----------------~pTig~d~~~~~i~--v---dg~~v~LqLwDTpG~ 66 (730)
+|+|+|..++|||||+.+|+........ ....|.+.....+. + ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875433210 01112222222222 2 355789999999999
Q ss_pred hhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCce
Q psy17467 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALAT 146 (730)
Q Consensus 67 e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PV 146 (730)
.++......++..+|++|+|+|+++..+++. ..|+..+.. .+.|+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----------------------------------~~~p~ 126 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----------------------------------EGLPI 126 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----------------------------------cCCCE
Confidence 9998888888999999999999988766543 233333211 34788
Q ss_pred EEeccCCCcc
Q psy17467 147 ALASDKTDLD 156 (730)
Q Consensus 147 VLVGNK~DL~ 156 (730)
++|+||.|+.
T Consensus 127 iiviNK~D~~ 136 (213)
T cd04167 127 VLVINKIDRL 136 (213)
T ss_pred EEEEECcccC
Confidence 9999999975
No 213
>KOG1191|consensus
Probab=99.42 E-value=1e-12 Score=145.71 Aligned_cols=228 Identities=17% Similarity=0.118 Sum_probs=144.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-h--------hhHh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-S--------ITQS 75 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-s--------l~~~ 75 (730)
.-++|+|+|+||||||||+|.|.+.+.. +...|.++.|-....++++| +.+.|.||+|..+.. . ....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 3479999999999999999999987764 34445555555556666777 889999999976511 1 1134
Q ss_pred hhccccEEEEEeec--CCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 76 YYRSAHALILVYDI--SCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 76 ~~r~ADaIILVyDv--td~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
-++.||+|++|+|. ++.++-..+.+.++....-. ..+.+ .....+++++.||.
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~------~~~~~-------------------~~~~~~~i~~~nk~ 399 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGL------VVIVN-------------------KMEKQRIILVANKS 399 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccce------EEEec-------------------cccccceEEEechh
Confidence 47789999999999 55555545444444432211 11110 11345677777777
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK 233 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk 233 (730)
|+..+.. .+ .|.+.. . ..+ . .....-...++|++
T Consensus 400 D~~s~~~---------------~~------------------------~~~~~~--~---~~~-~-~~~~~~i~~~vs~~ 433 (531)
T KOG1191|consen 400 DLVSKIP---------------EM------------------------TKIPVV--Y---PSA-E-GRSVFPIVVEVSCT 433 (531)
T ss_pred hccCccc---------------cc------------------------cCCcee--c---ccc-c-cCcccceEEEeeec
Confidence 7753210 00 111100 0 000 0 00011136779999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeeec
Q psy17467 234 ASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVS 313 (730)
Q Consensus 234 tG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~ 313 (730)
|++|++++-..+.+.+... +....+.|+.+.+++.+-.+.+.. .
T Consensus 434 tkeg~~~L~~all~~~~~~-------------------------~~~~~s~~~t~~~~r~~~~~r~~~--~--------- 477 (531)
T KOG1191|consen 434 TKEGCERLSTALLNIVERL-------------------------VVSPHSAPPTLSQKRIKELLRTCA--A--------- 477 (531)
T ss_pred hhhhHHHHHHHHHHHHHHh-------------------------hcCCCCCchhhcchhHHHHHHhhh--h---------
Confidence 9999999999888776211 123455677777776666554432 1
Q ss_pred cccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467 314 GISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG 347 (730)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (730)
+..+.+|+.+.+++-+++.+.|+|+-.++
T Consensus 478 -----~~l~~~~~~k~~~~D~~la~~~lR~a~~~ 506 (531)
T KOG1191|consen 478 -----PELERRFLAKQLKEDIDLAGEPLRLAQRS 506 (531)
T ss_pred -----hhHHHHHHhhhcccchhhccchHHHHHhh
Confidence 26678999999999999999999986554
No 214
>COG1159 Era GTPase [General function prediction only]
Probab=99.41 E-value=4.2e-12 Score=134.34 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=102.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------hhhHhh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--------SITQSY 76 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--------sl~~~~ 76 (730)
..--|+|+|.||||||||+|++++.+.... ..|.++.......++.+ ..++.++||||..+-. ......
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 345799999999999999999999887543 44555434434444444 4789999999953221 222345
Q ss_pred hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
+.++|+++||.|+++...-.+ ...++.++. .+.|++++.||.|..
T Consensus 83 l~dvDlilfvvd~~~~~~~~d-~~il~~lk~----------------------------------~~~pvil~iNKID~~ 127 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGD-EFILEQLKK----------------------------------TKTPVILVVNKIDKV 127 (298)
T ss_pred hccCcEEEEEEeccccCCccH-HHHHHHHhh----------------------------------cCCCeEEEEEccccC
Confidence 789999999999987432211 112222211 356888888999986
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKAS 235 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG 235 (730)
+....+ ....+.+..... ...+++||++|
T Consensus 128 ~~~~~l--------------------------------------------------~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 128 KPKTVL--------------------------------------------------LKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred CcHHHH--------------------------------------------------HHHHHHHHhhCCcceEEEeecccc
Confidence 533210 112222233332 26899999999
Q ss_pred CChHHHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAAEL 249 (730)
Q Consensus 236 ~GVeeLFe~Li~~l 249 (730)
.|++.+.+.+...+
T Consensus 158 ~n~~~L~~~i~~~L 171 (298)
T COG1159 158 DNVDTLLEIIKEYL 171 (298)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999887766
No 215
>KOG0072|consensus
Probab=99.40 E-value=4.7e-13 Score=127.76 Aligned_cols=96 Identities=30% Similarity=0.471 Sum_probs=78.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
.+...+++++|..|+|||+++.++.-++.. +..|++| +...++++.+ ..+++||..|+...+.+|+.||.+.|++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceE
Confidence 346689999999999999999998876654 4458887 4455666655 8899999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLRE 104 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wlee 104 (730)
|+|+|.+|+.........+..
T Consensus 90 IyVVDssd~dris~a~~el~~ 110 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYS 110 (182)
T ss_pred EEEEeccchhhhhhhHHHHHH
Confidence 999999998777655543333
No 216
>PRK10218 GTP-binding protein; Provisional
Probab=99.40 E-value=4.4e-12 Score=147.45 Aligned_cols=89 Identities=24% Similarity=0.372 Sum_probs=71.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQ--GVFPPGQ------------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI 72 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~--~~f~~~~------------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl 72 (730)
.-+|+|+|..++|||||+++|+. +.+...+ ..+.|.++......++.+.+.+++|||||+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999996 4333221 234566666666666666689999999999999999
Q ss_pred hHhhhccccEEEEEeecCCCCch
Q psy17467 73 TQSYYRSAHALILVYDISCQPTF 95 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd~eSf 95 (730)
+..+++.+|++|+|+|+++....
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~ 107 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMP 107 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccH
Confidence 99999999999999999876433
No 217
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.40 E-value=2.3e-12 Score=148.24 Aligned_cols=152 Identities=22% Similarity=0.187 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh------hhhHhhhc--c
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR------SITQSYYR--S 79 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~------sl~~~~~r--~ 79 (730)
.+|+++|.||||||||+|++++.+.....+|.++++.....+.+.+ ..++++|+||..... .+.+.|+. +
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 5699999999999999999999999999999999999999998888 458999999965432 23334433 5
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e 159 (730)
.|++|-|.|.+|.+.--.+.-.+-+ -+.|++++-|++|.
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE-------------------------------------~g~p~ilaLNm~D~---- 120 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLE-------------------------------------LGIPMILALNMIDE---- 120 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHH-------------------------------------cCCCeEEEeccHhh----
Confidence 7999999999985532222211111 24455666655555
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChH
Q psy17467 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE 239 (730)
Q Consensus 160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVe 239 (730)
.++.--.-+.+++.+.+|++++++||++|.|++
T Consensus 121 -----------------------------------------------A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 121 -----------------------------------------------AKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred -----------------------------------------------HHhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 333334456778899999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 240 KLFMQIAAEL 249 (730)
Q Consensus 240 eLFe~Li~~l 249 (730)
++.+.+.+..
T Consensus 154 ~l~~~i~~~~ 163 (653)
T COG0370 154 ELKRAIIELA 163 (653)
T ss_pred HHHHHHHHhc
Confidence 9999988766
No 218
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.39 E-value=3e-12 Score=138.49 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=60.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe---------------------CC-eEEEEEEEeCCCc-
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI---------------------NN-ERIKLQIWDTAGQ- 66 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v---------------------dg-~~v~LqLwDTpG~- 66 (730)
|+++|.||||||||+|++++..+....+|..+.++......+ ++ ..+.+++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999998876544454443443333322 23 3478999999997
Q ss_pred ---hhhhhhhHhh---hccccEEEEEeecCC
Q psy17467 67 ---ERFRSITQSY---YRSAHALILVYDISC 91 (730)
Q Consensus 67 ---e~~~sl~~~~---~r~ADaIILVyDvtd 91 (730)
.++..+...+ +++||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4455555554 899999999999974
No 219
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.39 E-value=3.8e-12 Score=141.72 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=100.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc------ceeeEE----------------EEEEEeCC------eEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGAT------IGVDFM----------------IKTVEINN------ERI 56 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pT------ig~d~~----------------~~~i~vdg------~~v 56 (730)
+..++|+++|..++|||||+++|++... ..+... +...+. ......++ ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 3468999999999999999999975321 111111 111000 00000011 136
Q ss_pred EEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcc
Q psy17467 57 KLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGL 136 (730)
Q Consensus 57 ~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~ 136 (730)
.+.+|||||+++|...+......+|++|+|+|+++........+.+..+...
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---------------------------- 132 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---------------------------- 132 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc----------------------------
Confidence 7999999999999877777788899999999999753111222222222110
Q ss_pred cccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH
Q psy17467 137 LCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG 216 (730)
Q Consensus 137 ~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~ 216 (730)
...|++++.||+|+.+.+... ...++.
T Consensus 133 -----gi~~iIVvvNK~Dl~~~~~~~------------------------------------------------~~~~~i 159 (406)
T TIGR03680 133 -----GIKNIVIVQNKIDLVSKEKAL------------------------------------------------ENYEEI 159 (406)
T ss_pred -----CCCeEEEEEEccccCCHHHHH------------------------------------------------HHHHHH
Confidence 113577888999986432110 011222
Q ss_pred HHHHHh---cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 217 EDFAKR---HDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 217 ~~lak~---lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.++... .+++++++||++|.|++++++.|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 233322 257899999999999999999987654
No 220
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.37 E-value=3.4e-12 Score=148.26 Aligned_cols=113 Identities=22% Similarity=0.327 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ--GVFPPGQ------------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ 74 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~--~~f~~~~------------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~ 74 (730)
+|+|+|..++|||||+.+|+. +.+.... ....|.+.......+.+..+.+.||||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 699999999999999999985 3332211 11223334444333333448899999999999998889
Q ss_pred hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 75 SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 75 ~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
.+++.+|++|+|+|+++.. ......|+..+.. .+.|+++|+||+|
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----------------------------------~~ip~IVviNKiD 127 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----------------------------------LGLKPIVVINKID 127 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----------------------------------CCCCEEEEEECCC
Confidence 9999999999999998743 3333455555432 3567888899999
Q ss_pred cc
Q psy17467 155 LD 156 (730)
Q Consensus 155 L~ 156 (730)
+.
T Consensus 128 ~~ 129 (594)
T TIGR01394 128 RP 129 (594)
T ss_pred CC
Confidence 85
No 221
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.37 E-value=1.3e-11 Score=143.45 Aligned_cols=92 Identities=25% Similarity=0.264 Sum_probs=62.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----CcceeeEEEEEEEe--CCeEE----------EEEEEeCCCchhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQG----ATIGVDFMIKTVEI--NNERI----------KLQIWDTAGQERFR 70 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~----pTig~d~~~~~i~v--dg~~v----------~LqLwDTpG~e~~~ 70 (730)
.--|+++|.+|+|||||++++.+........ .++|.++....... .+..+ .+.||||||++.|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 3469999999999999999998664432221 23332222211100 01111 16899999999999
Q ss_pred hhhHhhhccccEEEEEeecCC---CCchhhh
Q psy17467 71 SITQSYYRSAHALILVYDISC---QPTFDCL 98 (730)
Q Consensus 71 sl~~~~~r~ADaIILVyDvtd---~eSfe~L 98 (730)
.++...+..+|++|+|+|+++ +.+++.+
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i 116 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAI 116 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHH
Confidence 988888999999999999997 4444443
No 222
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.36 E-value=6.3e-12 Score=140.27 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=58.5
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----CcceeeEEEEEEE------------------eC--C----
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQG----ATIGVDFMIKTVE------------------IN--N---- 53 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~----pTig~d~~~~~i~------------------vd--g---- 53 (730)
+.++..++|+++|..++|||||+.+|.+. +..... ..++.+....... ++ +
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 45677899999999999999999999653 111111 1111111100000 01 1
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
....+.||||||+++|..........+|++++|+|++++.
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~ 122 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC 122 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 1357999999999887654444455679999999999653
No 223
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.36 E-value=1.3e-11 Score=144.07 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC---CCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG---VFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~---~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
-|+++|..++|||||+++|++. .+.......++.+.....+.. ++ ..+.+|||||+++|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 3889999999999999999963 333333334444443333333 33 45899999999998766667788999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc-eEEeccCCCcchhhHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA-TALASDKTDLDEDEHVLA 163 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P-VVLVGNK~DL~~~e~~~~ 163 (730)
+|+|+++...-+. .+.+..+ .. .+.| +++|.||+|+.+.+..
T Consensus 80 LVVda~eg~~~qT-~ehl~il-~~---------------------------------lgi~~iIVVlNKiDlv~~~~~-- 122 (614)
T PRK10512 80 LVVACDDGVMAQT-REHLAIL-QL---------------------------------TGNPMLTVALTKADRVDEARI-- 122 (614)
T ss_pred EEEECCCCCcHHH-HHHHHHH-HH---------------------------------cCCCeEEEEEECCccCCHHHH--
Confidence 9999987422111 1111111 10 1233 4678899998642210
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC---CeEEEEecCCCCChHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD---MYYLETSAKASDNVEK 240 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg---~~fvEtSAktG~GVee 240 (730)
....++..++....+ ++++++||++|.|+++
T Consensus 123 ----------------------------------------------~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 123 ----------------------------------------------AEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred ----------------------------------------------HHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 001234455555444 6899999999999999
Q ss_pred HHHHHHHHH
Q psy17467 241 LFMQIAAEL 249 (730)
Q Consensus 241 LFe~Li~~l 249 (730)
+++.|....
T Consensus 157 L~~~L~~~~ 165 (614)
T PRK10512 157 LREHLLQLP 165 (614)
T ss_pred HHHHHHHhh
Confidence 999997654
No 224
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.35 E-value=1e-11 Score=131.25 Aligned_cols=112 Identities=12% Similarity=0.086 Sum_probs=71.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-C----------------CCCC---cceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFP-P----------------GQGA---TIGVDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~-~----------------~~~p---Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
+|+|+|.+|+|||||+++++...-. . .+.+ .-+.+.......++...+.+++|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 6999999999999999999842110 0 0000 012223333334444458899999999998
Q ss_pred hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCch
Q psy17467 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124 (730)
Q Consensus 69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl 124 (730)
|.......++.+|++|+|+|+++..+.+ ...++..... .+.|+++++||.|.
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~ 135 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDR 135 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCcc
Confidence 8876777889999999999998754322 2233333221 24455555555443
No 225
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.34 E-value=1.4e-11 Score=118.87 Aligned_cols=135 Identities=21% Similarity=0.249 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch----hhhhhhHhhhccccEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE----RFRSITQSYYRSAHALI 84 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e----~~~sl~~~~~r~ADaII 84 (730)
||+++|+.|+|||||+++|.+.... +.-|. .+.+.+ .++||||.. .+.+..-....+||+|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq-------~i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQ-------AIEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccc-------eeEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 7999999999999999999886542 22222 222222 458999953 22222223455899999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|.|.+++.+.--= |+.+ .-+.||+-|.||+|+..+
T Consensus 69 ll~dat~~~~~~pP------------------------------------~fa~--~f~~pvIGVITK~Dl~~~------ 104 (143)
T PF10662_consen 69 LLQDATEPRSVFPP------------------------------------GFAS--MFNKPVIGVITKIDLPSD------ 104 (143)
T ss_pred EEecCCCCCccCCc------------------------------------hhhc--ccCCCEEEEEECccCccc------
Confidence 99999987653210 1111 135788888888888631
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM 243 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe 243 (730)
....+.++++.+.-|+ ..|++|+.+|+||++|.+
T Consensus 105 ---------------------------------------------~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 105 ---------------------------------------------DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred ---------------------------------------------hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 1234677778888888 589999999999999998
Q ss_pred HHH
Q psy17467 244 QIA 246 (730)
Q Consensus 244 ~Li 246 (730)
.|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 763
No 226
>KOG1423|consensus
Probab=99.33 E-value=2.2e-11 Score=128.80 Aligned_cols=120 Identities=19% Similarity=0.173 Sum_probs=77.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh-----------
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI----------- 72 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl----------- 72 (730)
..+.+.|+|+|.||||||||.|.+++.+......-.-+ +.....-.+-....++.|+||||.-.-...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T-Tr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT-TRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccc-eeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 34678999999999999999999999877654322222 122222223333478999999995321111
Q ss_pred -hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467 73 -TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD 151 (730)
Q Consensus 73 -~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN 151 (730)
....+..||++++|+|+++....-.-+ .+..+..+ .+.|.++|-|
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~-vl~~l~~y---------------------------------s~ips~lvmn 193 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPR-VLHMLEEY---------------------------------SKIPSILVMN 193 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChH-HHHHHHHH---------------------------------hcCCceeecc
Confidence 123467899999999999854433321 22333322 4678888889
Q ss_pred CCCcchh
Q psy17467 152 KTDLDED 158 (730)
Q Consensus 152 K~DL~~~ 158 (730)
|.|....
T Consensus 194 kid~~k~ 200 (379)
T KOG1423|consen 194 KIDKLKQ 200 (379)
T ss_pred chhcchh
Confidence 9998654
No 227
>PTZ00258 GTP-binding protein; Provisional
Probab=99.33 E-value=1.4e-11 Score=136.37 Aligned_cols=248 Identities=15% Similarity=0.046 Sum_probs=145.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFR 70 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~ 70 (730)
.-++|+|||.||||||||+|++++.......+|..+.++....+.+.+. ..+++++||||...-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3478999999999999999999988877776788877777777776543 2458999999964321
Q ss_pred ----hhhH---hhhccccEEEEEeecCCCC-------c---hhhhHHHHHHHH--------HHhc---ccceEEEEec--
Q psy17467 71 ----SITQ---SYYRSAHALILVYDISCQP-------T---FDCLTDWLREIE--------EYAS---FKVLRVLVGG-- 120 (730)
Q Consensus 71 ----sl~~---~~~r~ADaIILVyDvtd~e-------S---fe~L~~wleeI~--------~~~~---~~~piVLVg~-- 120 (730)
.+.. ..++++|++++|+|...-. + .+++.....++. +... ......-...
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~~~~~ 179 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKKKKEE 179 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccchhhH
Confidence 1222 3467899999999974211 1 222222222211 1100 0000000000
Q ss_pred ---cCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcc
Q psy17467 121 ---TSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIH 197 (730)
Q Consensus 121 ---k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ 197 (730)
...++.+.+.+.+ +.|+- ..++.+++. ..-..+.-...+|.
T Consensus 180 ~~~~~~l~~v~~~L~~---------~~~~~----~~~~~~~e~-----------------------~~l~~l~llt~KP~ 223 (390)
T PTZ00258 180 KVELDVLKKVLEWLEE---------GKPVR----DGDWTDKEI-----------------------EILNEYQLLTAKPM 223 (390)
T ss_pred HHHHHHHHHHHHHHHc---------CCccc----cCCCCHHHH-----------------------HHHHHhchhhcCCE
Confidence 0111122222222 11110 012222111 11122333567899
Q ss_pred ccccccc--cc-cCCCCChHHHHHHHHhc-CCeEEEEecCCCC-----------------------ChHHHHHHHHHHHH
Q psy17467 198 CMARNKI--DR-EDREIPTEVGEDFAKRH-DMYYLETSAKASD-----------------------NVEKLFMQIAAELM 250 (730)
Q Consensus 198 ivVgNK~--DL-~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~-----------------------GVeeLFe~Li~~l~ 250 (730)
++|.|+. |+ ....-..++..+++... +..++.+||+... |++.+...+++.+
T Consensus 224 iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL- 302 (390)
T PTZ00258 224 IYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLL- 302 (390)
T ss_pred EEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHh-
Confidence 9999998 75 22121234455566666 4789999986543 5555555555554
Q ss_pred HHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhcCCCCcee
Q psy17467 251 EKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKKFPNIDIK 310 (730)
Q Consensus 251 e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~~p~~~~~ 310 (730)
.+++.|+..+ ...++-.++++++..+.|-. |.++...|+.
T Consensus 303 ----------------~li~ffT~g~----~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~ 343 (390)
T PTZ00258 303 ----------------NLIHFFTAGP----DEVRCWTIQKGTKAPQAAGVIHSDFEKGFIC 343 (390)
T ss_pred ----------------CCEEEEcCCC----CceeEEEeCCCCcHHHHHhhhhhHHhhCcEE
Confidence 6777887553 34478889999999999987 9999999997
No 228
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.31 E-value=4.3e-11 Score=120.82 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=61.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCC------CCCC-----C---CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVF------PPGQ-----G---ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI 72 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f------~~~~-----~---pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl 72 (730)
.++|+++|..++|||||+++|+.... ...+ . -.-|.+.......+.....++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 37899999999999999999985310 0000 0 02233333444445444577899999999888776
Q ss_pred hHhhhccccEEEEEeecCCCC
Q psy17467 73 TQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd~e 93 (730)
....+..+|++++|+|++...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~ 102 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGP 102 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCC
Confidence 667788999999999998653
No 229
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.29 E-value=2.8e-11 Score=123.58 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=57.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--C------------------------CCC-----CCcceeeEEEEEEEeCCeEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVF--P------------------------PGQ-----GATIGVDFMIKTVEINNERIK 57 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f--~------------------------~~~-----~pTig~d~~~~~i~vdg~~v~ 57 (730)
+|+++|..++|||||+.+|+...- . ..+ ...++.+.....+.+++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 489999999999999999863210 0 000 11222233333344444 78
Q ss_pred EEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467 58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 58 LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~ 92 (730)
+.+|||||+.++.......+..+|++|+|+|+++.
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 99999999988776666677889999999999985
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.28 E-value=1.2e-10 Score=120.12 Aligned_cols=178 Identities=19% Similarity=0.182 Sum_probs=100.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-----------------------cceeeEEE---------------EEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGA-----------------------TIGVDFMI---------------KTVE 50 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~p-----------------------Tig~d~~~---------------~~i~ 50 (730)
||+++|+.++|||||+++|+.+.+...... .+|.+..- ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999998766432110 01111000 0111
Q ss_pred eCCeEEEEEEEeCCCchhhhhhhHhhhc--cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHH
Q psy17467 51 INNERIKLQIWDTAGQERFRSITQSYYR--SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVN 128 (730)
Q Consensus 51 vdg~~v~LqLwDTpG~e~~~sl~~~~~r--~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~ 128 (730)
.. ...+.++||||+++|.......+. .+|++++|+|++...+-++ .+++..+..
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~--------------------- 136 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA--------------------- 136 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH---------------------
Confidence 12 356899999999888654444443 6899999999887543222 223333221
Q ss_pred HHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcc-cCCcCCcccccccccccc
Q psy17467 129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASL-EGHSNNIHCMARNKIDRE 207 (730)
Q Consensus 129 ~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~-~~~~~~~~ivVgNK~DL~ 207 (730)
.+.|+++|.||+|+.+.......+... .... .........+|.+..|..
T Consensus 137 -------------~~ip~ivvvNK~D~~~~~~~~~~~~~l-----------------~~~L~~~g~~~~p~~~~~~~~~~ 186 (224)
T cd04165 137 -------------LNIPVFVVVTKIDLAPANILQETLKDL-----------------KRILKVPGVRKLPVPVKSDDDVV 186 (224)
T ss_pred -------------cCCCEEEEEECccccCHHHHHHHHHHH-----------------HHHhcCCCccccceeeeccccee
Confidence 356888999999986433221111100 0000 001111122333432221
Q ss_pred CCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 208 DREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 208 ~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
. .+........++++.+||.+|+|++++...|.
T Consensus 187 ~------~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 187 L------AASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred e------hhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 0 01222223345899999999999999987764
No 231
>KOG1489|consensus
Probab=99.27 E-value=3.6e-11 Score=127.77 Aligned_cols=156 Identities=22% Similarity=0.272 Sum_probs=116.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh----Hh---hhcccc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT----QS---YYRSAH 81 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~----~~---~~r~AD 81 (730)
.|-+||.||+|||||++++...+.....++.++..+...++.+++-. ++.+-|+||..+-.++. .. .++.|+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 46799999999999999999998888888888877777788777633 38999999976544433 23 366899
Q ss_pred EEEEEeecCCC---CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 82 ALILVYDISCQ---PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 82 aIILVyDvtd~---eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
..++|.|++.. .-++.++.+..++..+.. + -.+.|.++|+||+|+.+.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek------------------------~-----L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEK------------------------G-----LADRPALIVANKIDLPEA 327 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhh------------------------h-----hccCceEEEEeccCchhH
Confidence 99999999988 778888877777766542 1 145677777788877432
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN 237 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G 237 (730)
+. ....++++.+.- .++++||++|+|
T Consensus 328 e~-----------------------------------------------------~~l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 328 EK-----------------------------------------------------NLLSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred HH-----------------------------------------------------HHHHHHHHHcCCCcEEEeeeccccc
Confidence 21 123556666643 489999999999
Q ss_pred hHHHHHHHHH
Q psy17467 238 VEKLFMQIAA 247 (730)
Q Consensus 238 VeeLFe~Li~ 247 (730)
++++.+.+-+
T Consensus 355 l~~ll~~lr~ 364 (366)
T KOG1489|consen 355 LEELLNGLRE 364 (366)
T ss_pred hHHHHHHHhh
Confidence 9999877643
No 232
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=1.5e-10 Score=114.89 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=111.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCC--------CCCCC--cceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFP--------PGQGA--TIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ 74 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~--------~~~~p--Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~ 74 (730)
....||+|.|+-++||||++.++...... ..+.. ..+.-.....+.+++ ...+.++|||||++|.-+|+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHH
Confidence 34579999999999999999999865431 11111 111223333333333 25689999999999999999
Q ss_pred hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 75 SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 75 ~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
.+.++++++|++.|.+.+..| .....++.+... ..+|+++++||.|
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---------------------------------~~ip~vVa~NK~D 132 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---------------------------------NPIPVVVAINKQD 132 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---------------------------------cCCCEEEEeeccc
Confidence 999999999999999999998 333333333221 1178888888888
Q ss_pred cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc--CCeEEEEec
Q psy17467 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH--DMYYLETSA 232 (730)
Q Consensus 155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l--g~~fvEtSA 232 (730)
|.+ ..+.++.+++.+.. ..+.++++|
T Consensus 133 L~~----------------------------------------------------a~ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 133 LFD----------------------------------------------------ALPPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred cCC----------------------------------------------------CCCHHHHHHHHHhccCCCceeeeec
Confidence 864 23445555544433 788999999
Q ss_pred CCCCChHHHHHHHHHH
Q psy17467 233 KASDNVEKLFMQIAAE 248 (730)
Q Consensus 233 ktG~GVeeLFe~Li~~ 248 (730)
.+++++.+..+.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999888877543
No 233
>PRK12735 elongation factor Tu; Reviewed
Probab=99.26 E-value=7.5e-11 Score=131.04 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=63.7
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcC-------CCC----CCC---CCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQG-------VFP----PGQ---GATIGVDFMIKTVEINNERIKLQIWDTAGQE 67 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~-------~f~----~~~---~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e 67 (730)
++.+..++|+++|.+++|||||+++|++. .+. ... .-.-|.+.......+.....++.|+||||+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 34567799999999999999999999862 110 000 0122333333344444444678999999998
Q ss_pred hhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 68 RFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 68 ~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
+|.......+..+|++++|+|+++..
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~ 112 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGP 112 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCC
Confidence 87665556677899999999998753
No 234
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.25 E-value=5.9e-11 Score=124.63 Aligned_cols=88 Identities=23% Similarity=0.326 Sum_probs=62.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC------C------------CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ------G------------ATIGVDFMIKTVEINNERIKLQIWDTAGQERFR 70 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~------~------------pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~ 70 (730)
+|+++|.+|+|||||+++++........ . ...+.......+.+++ +.+.+|||||..++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 4899999999999999999753211100 0 0111122233444555 779999999998888
Q ss_pred hhhHhhhccccEEEEEeecCCCCchhhh
Q psy17467 71 SITQSYYRSAHALILVYDISCQPTFDCL 98 (730)
Q Consensus 71 sl~~~~~r~ADaIILVyDvtd~eSfe~L 98 (730)
.....+++.+|++|+|+|.++..+....
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~ 106 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTE 106 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHH
Confidence 8788899999999999999987665443
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.24 E-value=9e-11 Score=124.58 Aligned_cols=61 Identities=26% Similarity=0.506 Sum_probs=49.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCC----------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPG----------QGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~----------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
..++|+++|.+|+|||||+|++++..+... ..+|++.+.....+..+|..+.+.+|||||-
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 568999999999999999999998876543 3456666666667777888899999999993
No 236
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.24 E-value=9.7e-11 Score=134.57 Aligned_cols=88 Identities=16% Similarity=0.224 Sum_probs=61.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHc--CCCC---------------CCCC---CcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQ--GVFP---------------PGQG---ATIGVDFMIKTVEINNERIKLQIWDTAG 65 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~--~~f~---------------~~~~---pTig~d~~~~~i~vdg~~v~LqLwDTpG 65 (730)
..-+|+|+|.+++|||||+++|+. +... .++. ..-|.+.......++.+.+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 446899999999999999999973 1100 0000 0112223333333333448899999999
Q ss_pred chhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 66 QERFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 66 ~e~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
+.+|......+++.+|++|+|+|+++..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv 116 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGV 116 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCC
Confidence 9998887777899999999999998753
No 237
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.24 E-value=2.7e-10 Score=114.42 Aligned_cols=173 Identities=13% Similarity=0.140 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccee---eEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHh-----hhcc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGV---DFMIKTVEINNERIKLQIWDTAGQERFRSITQS-----YYRS 79 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~---d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~-----~~r~ 79 (730)
+||+++|++|||||||+|.+++..+.....++.+. ......+... ....+.+|||||.......... .+.+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 78999999999999999999986654332222221 1111111111 1236899999997543222222 2677
Q ss_pred ccEEEEEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 80 AHALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
+|++++|.| .+|.... .|++.+.. .+.|+++|+||+|+...
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~----------------------------------~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQC----------------------------------MGKKFYFVRTKVDRDLS 122 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHH----------------------------------hCCCEEEEEecccchhh
Confidence 899999843 2344443 35555533 13577888999998532
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC-CCCChHHHHHHHHhcCC---eEEEEecC-
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDM---YYLETSAK- 233 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~-R~Vs~ee~~~lak~lg~---~fvEtSAk- 233 (730)
.... ..+ .+.+... -+--.+.........|. .++-+|+.
T Consensus 123 ~~~~-------------------------------~~~-----~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~ 166 (197)
T cd04104 123 NEQR-------------------------------SKP-----RSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFD 166 (197)
T ss_pred hhhc-------------------------------ccc-----ccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCC
Confidence 1100 000 0000000 00001112222222232 58999998
Q ss_pred -CCCChHHHHHHHHHHHHHHHHH
Q psy17467 234 -ASDNVEKLFMQIAAELMEKLAE 255 (730)
Q Consensus 234 -tG~GVeeLFe~Li~~l~e~~~~ 255 (730)
.+.|+..+.+.++..+.+..+.
T Consensus 167 ~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 167 PSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred hhhcChHHHHHHHHHHhhHHHHH
Confidence 6799999999999999765544
No 238
>PRK12736 elongation factor Tu; Reviewed
Probab=99.23 E-value=2.9e-10 Score=126.23 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=62.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-----------CC---CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-----------GQ---GATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-----------~~---~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~ 69 (730)
.+..++|+++|..++|||||+++|++..... .. .-.-|.+.......+......+.+|||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4456899999999999999999998631100 00 012233344444555444567899999999888
Q ss_pred hhhhHhhhccccEEEEEeecCCC
Q psy17467 70 RSITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 70 ~sl~~~~~r~ADaIILVyDvtd~ 92 (730)
..........+|++++|+|+++.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g 111 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDG 111 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 66555556789999999999874
No 239
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.22 E-value=1.4e-10 Score=128.63 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=63.2
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcC-----C--CC-----CCC--CCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQG-----V--FP-----PGQ--GATIGVDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~-----~--f~-----~~~--~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
+.+..++|+++|..++|||||+++|++. + +. ... .-.-|.+.....+.++.....+.||||||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 4566799999999999999999999742 0 00 000 01123333344555555557889999999988
Q ss_pred hhhhhHhhhccccEEEEEeecCCCC
Q psy17467 69 FRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 69 ~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
|..........+|++++|+|+++..
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~ 112 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGP 112 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCC
Confidence 8654445566789999999998753
No 240
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.22 E-value=3.6e-10 Score=114.09 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=104.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhhhhHh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG----------QERFRSITQS 75 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG----------~e~~~sl~~~ 75 (730)
...-|+++|.+|||||||+|.+++.+......-|.|.+.....+.+++. +.++|.|| .+.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 3457999999999999999999997754444456666666677777764 88999998 2344455556
Q ss_pred hhcc---ccEEEEEeecCCCCchhhh--HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467 76 YYRS---AHALILVYDISCQPTFDCL--TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS 150 (730)
Q Consensus 76 ~~r~---ADaIILVyDvtd~eSfe~L--~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG 150 (730)
|++. -.++++++|+..+..-.+. -+|+.+ .++|++++.
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~-------------------------------------~~i~~~vv~ 142 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE-------------------------------------LGIPVIVVL 142 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH-------------------------------------cCCCeEEEE
Confidence 6653 4688889998776554332 223333 567889999
Q ss_pred cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe--EE
Q psy17467 151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY--YL 228 (730)
Q Consensus 151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~--fv 228 (730)
||+|.....+....+ ....+.+....... ++
T Consensus 143 tK~DKi~~~~~~k~l-----------------------------------------------~~v~~~l~~~~~~~~~~~ 175 (200)
T COG0218 143 TKADKLKKSERNKQL-----------------------------------------------NKVAEELKKPPPDDQWVV 175 (200)
T ss_pred EccccCChhHHHHHH-----------------------------------------------HHHHHHhcCCCCccceEE
Confidence 999987543221111 01111222222222 78
Q ss_pred EEecCCCCChHHHHHHHHHHH
Q psy17467 229 ETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 229 EtSAktG~GVeeLFe~Li~~l 249 (730)
..|+.++.|++++...|...+
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEecccccCHHHHHHHHHHHh
Confidence 889999999999988887765
No 241
>KOG1487|consensus
Probab=99.20 E-value=3.5e-11 Score=124.66 Aligned_cols=244 Identities=17% Similarity=0.082 Sum_probs=166.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----hh---Hhhhccc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----IT---QSYYRSA 80 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----l~---~~~~r~A 80 (730)
-||-++|.|.|||||++..+++...+...+...+.......+.+++ .++++.|.||..+-.. .. -...+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3789999999999999999997665554444444445555666666 6799999998644322 11 2346789
Q ss_pred cEEEEEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEecc-----------CchhhHHHHHhhhcccccCCCCCceEE
Q psy17467 81 HALILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGT-----------SGLKIVNEMASAAGLLCTVDPALATAL 148 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k-----------~dl~~~~~i~~~~g~~~~~~~~~PVVL 148 (730)
+.|++|.|+-.|-+-..+- ..++-+........|.+....+ .|++.+++++..++.+++. +.+
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAd-----i~L 212 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSAD-----IAL 212 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchh-----eee
Confidence 9999999999988876653 3455443333344444443333 6788889999999997752 111
Q ss_pred eccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEE
Q psy17467 149 ASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYL 228 (730)
Q Consensus 149 VGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fv 228 (730)
..|- +..-.++.+.++..|.|.+.+.||+|- ++.||..-+-+. ...+
T Consensus 213 ---r~Da------------------------T~DdLIdvVegnr~yVp~iyvLNkIds----ISiEELdii~~i--phav 259 (358)
T KOG1487|consen 213 ---RFDA------------------------TADDLIDVVEGNRIYVPCIYVLNKIDS----ISIEELDIIYTI--PHAV 259 (358)
T ss_pred ---ecCc------------------------chhhhhhhhccCceeeeeeeeecccce----eeeeccceeeec--ccee
Confidence 1121 112235566677789999999999983 444443322111 1369
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccc-hhhHHHHHH-hhcCCC
Q psy17467 229 ETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDK-SLESCIKQI-VKKFPN 306 (730)
Q Consensus 229 EtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~-~~~~~~~~~-~k~~p~ 306 (730)
.+||-++.|++++.+-+...+ .+.|+|+++.+..+.-..|++++.. +.+.++|.. |+..-.
T Consensus 260 pISA~~~wn~d~lL~~mweyL-----------------~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih~~~~~ 322 (358)
T KOG1487|consen 260 PISAHTGWNFDKLLEKMWEYL-----------------KLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIHKSILK 322 (358)
T ss_pred ecccccccchHHHHHHHhhcc-----------------hheEEecCCCCCCCCCCCCceecCCcccHHHHHHHHHHHHHH
Confidence 999999999999999988877 8899999999988877777777654 455566554 765544
Q ss_pred Cc
Q psy17467 307 ID 308 (730)
Q Consensus 307 ~~ 308 (730)
-|
T Consensus 323 ~f 324 (358)
T KOG1487|consen 323 QF 324 (358)
T ss_pred hh
Confidence 44
No 242
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.20 E-value=3.3e-10 Score=130.19 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=63.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHc-CCCCCC----------------C---CCcceeeEEEEEEEeCCeEEEEEEEeCC
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQ-GVFPPG----------------Q---GATIGVDFMIKTVEINNERIKLQIWDTA 64 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~-~~f~~~----------------~---~pTig~d~~~~~i~vdg~~v~LqLwDTp 64 (730)
....+|+|+|.+++|||||+++++. +..... + ....|.+.....+.++.+.+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3456899999999999999999863 111100 0 0112333344444455555889999999
Q ss_pred CchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467 65 GQERFRSITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 65 G~e~~~sl~~~~~r~ADaIILVyDvtd~ 92 (730)
|+.+|.......++.+|++|+|+|+++.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g 116 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG 116 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence 9998887667788999999999999874
No 243
>CHL00071 tufA elongation factor Tu
Probab=99.20 E-value=5.5e-10 Score=124.63 Aligned_cols=92 Identities=20% Similarity=0.175 Sum_probs=64.2
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC------CCC--------CcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP------GQG--------ATIGVDFMIKTVEINNERIKLQIWDTAGQE 67 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~------~~~--------pTig~d~~~~~i~vdg~~v~LqLwDTpG~e 67 (730)
+..+..++|+++|.+++|||||+++|++..-.. .+. -.-|.+.......+..+..++.|+||||+.
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 345677999999999999999999998641100 000 012333333334444444678899999998
Q ss_pred hhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 68 RFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 68 ~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
+|.......+..+|++++|+|++...
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~ 112 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGP 112 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCC
Confidence 87666666678999999999998653
No 244
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.18 E-value=2.9e-10 Score=128.40 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=67.6
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCC--C------------------------CCCCC---cceeeEEEEEEEe
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVF--P------------------------PGQGA---TIGVDFMIKTVEI 51 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f--~------------------------~~~~p---Tig~d~~~~~i~v 51 (730)
|...+..++|+++|..++|||||+-+|+...- . .+..+ .-|.+.......+
T Consensus 1 ~~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~ 80 (447)
T PLN00043 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF 80 (447)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe
Confidence 44556779999999999999999999874110 0 00000 1122222233334
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhh
Q psy17467 52 NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCL 98 (730)
Q Consensus 52 dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L 98 (730)
......+.++|+||+++|.......+..+|++|+|+|+++ .+|+..
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g 126 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAG 126 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-Cceecc
Confidence 4455789999999999998888888999999999999987 445543
No 245
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.16 E-value=1.2e-09 Score=115.75 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=60.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCC----------------CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ--GVFP----------------PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR 70 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~--~~f~----------------~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~ 70 (730)
+|+++|.+|+|||||+++++. +... ......++.+.....+.+++ .++.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 489999999999999999973 1100 00111223233334445555 789999999998888
Q ss_pred hhhHhhhccccEEEEEeecCCCC
Q psy17467 71 SITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 71 sl~~~~~r~ADaIILVyDvtd~e 93 (730)
..+..+++.+|++|+|+|+++..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~ 101 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGV 101 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCC
Confidence 88888999999999999998754
No 246
>PRK13351 elongation factor G; Reviewed
Probab=99.15 E-value=1.6e-10 Score=136.76 Aligned_cols=111 Identities=18% Similarity=0.264 Sum_probs=76.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC-------------CCC-------CCCcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-------------PPG-------QGATIGVDFMIKTVEINNERIKLQIWDTAG 65 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-------------~~~-------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG 65 (730)
...+|+|+|..|+|||||+++|+...- ..+ +..|+. .....+.+++ +.+++|||||
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~~~--~~i~liDtPG 82 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDWDN--HRINLIDTPG 82 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEECC--EEEEEEECCC
Confidence 346999999999999999999985211 110 111222 2223444444 7899999999
Q ss_pred chhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCch
Q psy17467 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124 (730)
Q Consensus 66 ~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl 124 (730)
+.++...+..+++.+|++|+|+|+++..+.+....| ..+.. .+.|+++++||.|+
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~ 137 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDR 137 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCC
Confidence 999988889999999999999999998777655444 22222 23455555555443
No 247
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.15 E-value=6.8e-10 Score=118.90 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=110.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh-----hhhhhH---hhhc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER-----FRSITQ---SYYR 78 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~-----~~sl~~---~~~r 78 (730)
+..|+|.|.||||||||++++++.+.....+|.++-......+..++ ..+|++||||.-+ ...+-. ..++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 35689999999999999999999999888889888777777777776 6899999999521 111111 1122
Q ss_pred -cccEEEEEeecCCCCc--hhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467 79 -SAHALILVYDISCQPT--FDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL 155 (730)
Q Consensus 79 -~ADaIILVyDvtd~eS--fe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL 155 (730)
=+++|+|+||.+...- .+.=..++++|+..- +.|+++|.||.|.
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---------------------------------~~p~v~V~nK~D~ 292 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---------------------------------KAPIVVVINKIDI 292 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---------------------------------CCCeEEEEecccc
Confidence 3689999999886544 444455777776532 2678888888887
Q ss_pred chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCC
Q psy17467 156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKA 234 (730)
Q Consensus 156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAkt 234 (730)
.+.+. .+++.......| .....+|+..
T Consensus 293 ~~~e~----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 293 ADEEK----------------------------------------------------LEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred cchhH----------------------------------------------------HHHHHHHHHhhccccccceeeee
Confidence 64321 122332233333 3478889999
Q ss_pred CCChHHHHHHHHHHHHH
Q psy17467 235 SDNVEKLFMQIAAELME 251 (730)
Q Consensus 235 G~GVeeLFe~Li~~l~e 251 (730)
+.+++.+-+.+.....+
T Consensus 321 ~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 321 GCGLDKLREEVRKTALE 337 (346)
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 99999888877776543
No 248
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.11 E-value=4.1e-10 Score=128.04 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=60.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC---------------------------------CCcceeeEEEEEEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ---------------------------------GATIGVDFMIKTVE 50 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~---------------------------------~pTig~d~~~~~i~ 50 (730)
.+..++|+++|..++|||||+.+|+...-.... ...++.+.....+
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~- 102 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF- 102 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe-
Confidence 456699999999999999999999753211110 0012222222233
Q ss_pred eCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 51 INNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 51 vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
.....++.||||||+++|.......+..+|++|+|+|+++..
T Consensus 103 -~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~ 144 (474)
T PRK05124 103 -STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV 144 (474)
T ss_pred -ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc
Confidence 333467899999999888654445578999999999998653
No 249
>KOG0090|consensus
Probab=99.11 E-value=2.4e-10 Score=115.84 Aligned_cols=190 Identities=21% Similarity=0.224 Sum_probs=118.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhc---cccEEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYR---SAHALIL 85 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r---~ADaIIL 85 (730)
.|+++|+.++|||+|+.+|..+.+..++.+. +.......++. -.+.++|.||+.+.+.-...++. .+-+|||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 5899999999999999999998665544221 22333444433 23899999999988776666666 7999999
Q ss_pred Eeec-CCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 86 VYDI-SCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 86 VyDv-td~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
|.|. +......++.+++.++.-.+. .....+|+++++||.|+..-.
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~----------------------------~~~~~~~vLIaCNKqDl~tAk----- 161 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSR----------------------------VKKNKPPVLIACNKQDLFTAK----- 161 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhc----------------------------cccCCCCEEEEecchhhhhcC-----
Confidence 9995 456666777777777654431 123577889999999987421
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH----HHhcCCeEEEEecCCCCChHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF----AKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l----ak~lg~~fvEtSAktG~GVee 240 (730)
.+-.|-+...++.......-+ ....++-.|..++.....++..+ +....+.|.|+|+++| ++++
T Consensus 162 -----t~~~Ir~~LEkEi~~lr~sRs------a~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~ 229 (238)
T KOG0090|consen 162 -----TAEKIRQQLEKEIHKLRESRS------ALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQ 229 (238)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHh------hhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHH
Confidence 111222222222222222211 11122333433333333444442 2234578999999999 8999
Q ss_pred HHHHHHHH
Q psy17467 241 LFMQIAAE 248 (730)
Q Consensus 241 LFe~Li~~ 248 (730)
+-+|+.+.
T Consensus 230 ~~~wi~~~ 237 (238)
T KOG0090|consen 230 WESWIREA 237 (238)
T ss_pred HHHHHHHh
Confidence 98887653
No 250
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.11 E-value=3.1e-10 Score=117.06 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=63.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC----------------CCcceeeEEEEEEEeC--------CeEEEEEEEeCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ----------------GATIGVDFMIKTVEIN--------NERIKLQIWDTA 64 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~----------------~pTig~d~~~~~i~vd--------g~~v~LqLwDTp 64 (730)
+|+++|..++|||||+.+|+...-.... ...++.......+.+. +..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999853211000 0011111112223333 447899999999
Q ss_pred CchhhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467 65 GQERFRSITQSYYRSAHALILVYDISCQPTFDC 97 (730)
Q Consensus 65 G~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~ 97 (730)
|+.+|......+++.+|++|+|+|+++..+.+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t 114 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT 114 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence 999999988999999999999999998766654
No 251
>PLN03126 Elongation factor Tu; Provisional
Probab=99.10 E-value=1.8e-09 Score=122.85 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=63.2
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcC------CCCCC--------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQG------VFPPG--------QGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~------~f~~~--------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
..+..++|+++|..++|||||+++|++. ..... .....|.+.......+......+.++|+||+.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 3566799999999999999999999852 11110 011123333333333333346789999999998
Q ss_pred hhhhhHhhhccccEEEEEeecCCCC
Q psy17467 69 FRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 69 ~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
|.......+..+|++++|+|+++..
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~ 181 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGP 181 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCC
Confidence 8766566677899999999998754
No 252
>KOG1490|consensus
Probab=99.09 E-value=4.5e-10 Score=125.03 Aligned_cols=205 Identities=18% Similarity=0.181 Sum_probs=136.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh----hhhhHhh-----hc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF----RSITQSY-----YR 78 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~----~sl~~~~-----~r 78 (730)
=.++++|.||||||||+|..+.+.....++++++...+...+.+.- ..+++.||||.-+. ....+.. ..
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 3579999999999999999999998888888877666666655544 67899999996321 1111111 01
Q ss_pred cccEEEEEeecCCCCch--hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 79 SAHALILVYDISCQPTF--DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSf--e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
=-.+|+++.|++....+ +.-..+++.|+... .|.|+|+|.||+|+.
T Consensus 247 LraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--------------------------------aNK~~IlvlNK~D~m 294 (620)
T KOG1490|consen 247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--------------------------------ANKVTILVLNKIDAM 294 (620)
T ss_pred hhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--------------------------------cCCceEEEeeccccc
Confidence 12478999999875444 44344667765432 467788888888875
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD 236 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~ 236 (730)
..+ |+. +...+-.+.+...-+++++++|+.+.+
T Consensus 295 ~~e---------------------------------------------dL~--~~~~~ll~~~~~~~~v~v~~tS~~~ee 327 (620)
T KOG1490|consen 295 RPE---------------------------------------------DLD--QKNQELLQTIIDDGNVKVVQTSCVQEE 327 (620)
T ss_pred Ccc---------------------------------------------ccC--HHHHHHHHHHHhccCceEEEecccchh
Confidence 322 111 111122334444456899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchh
Q psy17467 237 NVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSL 293 (730)
Q Consensus 237 GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~ 293 (730)
||.++-..+++.++..+-+............+.++.-..|...+..-+||.++.+..
T Consensus 328 gVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p~~rd~~~r~p~ip~~~~ 384 (620)
T KOG1490|consen 328 GVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIHLAEPAARDEVARPPCIPDSVK 384 (620)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcccccccCCCcchHHH
Confidence 999999999999988877765554443335566666655655555566777666543
No 253
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.08 E-value=7.8e-10 Score=123.36 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC---------------------------------CCcceeeEEEEEEEeCCe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQ---------------------------------GATIGVDFMIKTVEINNE 54 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~---------------------------------~pTig~d~~~~~i~vdg~ 54 (730)
+||+++|..++|||||+.+|+...-.... .-.++.+.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 58999999999999999999742111000 0111222323333333
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
...+.||||||+++|.......+..+|++|+|+|++...
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~ 117 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV 117 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 467899999999988765556678999999999998654
No 254
>PRK00049 elongation factor Tu; Reviewed
Probab=99.07 E-value=5.5e-09 Score=116.26 Aligned_cols=91 Identities=20% Similarity=0.178 Sum_probs=64.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCC-----------CCC---CCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFP-----------PGQ---GATIGVDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-----------~~~---~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
+.+..++|+++|..++|||||+++|++.... .+. .-.-|.+.......+.....++.++||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3456799999999999999999999863110 000 00223334444445544446788999999988
Q ss_pred hhhhhHhhhccccEEEEEeecCCCC
Q psy17467 69 FRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 69 ~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
|.......+..+|++++|+|+++..
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~ 112 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGP 112 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC
Confidence 7665566678999999999998753
No 255
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.06 E-value=6e-10 Score=101.06 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQG-ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~-pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
+||+++|+.|||||+|+.|+....+...+. ++++ +..+...+++.++++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998888765443 4443 233345567889999999
Q ss_pred eecCCCCchhhhHHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIE 106 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~ 106 (730)
||.++..|++.+ |...+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~ 71 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVL 71 (124)
T ss_pred EEccCHHHHHHH--hHHHHH
Confidence 999999999776 776653
No 256
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.06 E-value=2.1e-09 Score=98.23 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=56.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh---------hhhhHhhhc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF---------RSITQSYYR 78 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~---------~sl~~~~~r 78 (730)
||+|+|.+|||||||+|++++... .....+..+.......+.+++.. +.++||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999998543 23333444444445566677744 579999996321 111223348
Q ss_pred cccEEEEEeecCC
Q psy17467 79 SAHALILVYDISC 91 (730)
Q Consensus 79 ~ADaIILVyDvtd 91 (730)
.+|++++|+|.++
T Consensus 79 ~~d~ii~vv~~~~ 91 (116)
T PF01926_consen 79 KSDLIIYVVDASN 91 (116)
T ss_dssp TESEEEEEEETTS
T ss_pred HCCEEEEEEECCC
Confidence 8999999999776
No 257
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.05 E-value=1.5e-10 Score=115.91 Aligned_cols=117 Identities=27% Similarity=0.400 Sum_probs=75.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhh-Hh--hhccccEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSIT-QS--YYRSAHALI 84 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~-~~--~~r~ADaII 84 (730)
.|+++|++|+|||+|+.+|..+....+..+. .... ...+ +...-.+.++|+||+.+.+... .. +..++.+||
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 4899999999999999999999776665444 2111 2222 2233468999999999877633 33 588999999
Q ss_pred EEeecCC-CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 85 LVYDISC-QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 85 LVyDvtd-~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
+|.|.+. ..++.++.+++.++..... ......|++|++||.|+..
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~----------------------------~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTE----------------------------VQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHH----------------------------CCTT--EEEEEEE-TTSTT
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhh----------------------------hccCCCCEEEEEeCccccc
Confidence 9999863 4456666667777654431 1235789999999999974
No 258
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.04 E-value=4.5e-09 Score=124.57 Aligned_cols=90 Identities=17% Similarity=0.086 Sum_probs=66.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCC----CC--------------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPP----GQ--------------GATIGVDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~----~~--------------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
.-+|+|+|.+|+|||||+++|+...-.. .. ...++.+.....+.+++ .++.+|||||+.+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~ 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVD 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcc
Confidence 3589999999999999999997421100 00 12233344445555665 7899999999988
Q ss_pred hhhhhHhhhccccEEEEEeecCCCCchhhh
Q psy17467 69 FRSITQSYYRSAHALILVYDISCQPTFDCL 98 (730)
Q Consensus 69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L 98 (730)
+.......++.+|++|+|+|+++..+.+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~ 117 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE 117 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH
Confidence 877788889999999999999987665543
No 259
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.04 E-value=4e-09 Score=115.93 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE---------------EEEEEEeCCCchhhh--
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER---------------IKLQIWDTAGQERFR-- 70 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~---------------v~LqLwDTpG~e~~~-- 70 (730)
++|.+||.||||||||+|++++.......+|..+.++....+.+.+.. ..++++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999988666666777777777777765521 358999999964321
Q ss_pred --hhhH---hhhccccEEEEEeecC
Q psy17467 71 --SITQ---SYYRSAHALILVYDIS 90 (730)
Q Consensus 71 --sl~~---~~~r~ADaIILVyDvt 90 (730)
.+.. ..++.||++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2222 2367999999999985
No 260
>COG2262 HflX GTPases [General function prediction only]
Probab=99.03 E-value=3.2e-09 Score=116.60 Aligned_cols=158 Identities=23% Similarity=0.241 Sum_probs=109.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--hhhH------hhhc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--SITQ------SYYR 78 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--sl~~------~~~r 78 (730)
...|+++|-.|+|||||+|++++........-..+.+...+.+.+.+ ...+-+-||-|=-+.- .+.. .-..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 35799999999999999999998777666666777778888888875 3567889998832211 1112 2255
Q ss_pred cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
.||+++.|.|++++...+.+. .+.+++.+.+. ...|+++|.||+|+..+
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~--------------------------~v~~vL~el~~-----~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLE--------------------------AVEDVLAEIGA-----DEIPIILVLNKIDLLED 319 (411)
T ss_pred cCCEEEEEeecCChhHHHHHH--------------------------HHHHHHHHcCC-----CCCCEEEEEecccccCc
Confidence 899999999999984333332 22344444444 34788888888887543
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCCh
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV 238 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GV 238 (730)
+. ....+..... ..+.+||++|.|+
T Consensus 320 ~~------------------------------------------------------~~~~~~~~~~-~~v~iSA~~~~gl 344 (411)
T COG2262 320 EE------------------------------------------------------ILAELERGSP-NPVFISAKTGEGL 344 (411)
T ss_pred hh------------------------------------------------------hhhhhhhcCC-CeEEEEeccCcCH
Confidence 21 0111111112 4799999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 239 EKLFMQIAAELME 251 (730)
Q Consensus 239 eeLFe~Li~~l~e 251 (730)
+.+.+.|.+.+..
T Consensus 345 ~~L~~~i~~~l~~ 357 (411)
T COG2262 345 DLLRERIIELLSG 357 (411)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988843
No 261
>KOG0077|consensus
Probab=99.03 E-value=6.6e-10 Score=108.74 Aligned_cols=115 Identities=17% Similarity=0.244 Sum_probs=91.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.=|++++|..|+|||||++.+.+.+. ..+.||.- +.+..+.+.+ +.++.+|.+|+..-+..|..|+..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccc-cccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 35899999999999999999986543 23334442 3334666777 7899999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
+|+-|.+-|...+..++.+.... .-.+.|+++.|||+|..
T Consensus 95 vda~d~er~~es~~eld~ll~~e------------------------------~la~vp~lilgnKId~p 134 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDE------------------------------SLATVPFLILGNKIDIP 134 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHH------------------------------HHhcCcceeecccccCC
Confidence 99999999988887766654432 11578889999999985
No 262
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.03 E-value=1.8e-09 Score=126.80 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=59.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC---------------------------------CCcceeeEEEEEEEe
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ---------------------------------GATIGVDFMIKTVEI 51 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~---------------------------------~pTig~d~~~~~i~v 51 (730)
...++|+++|.+++|||||+++++...-.... ...++.+.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 34589999999999999999999863221110 001111222223333
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 52 NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 52 dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
++ ..+.|+||||+++|.......+..+|++|+|+|+++..
T Consensus 102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~ 141 (632)
T PRK05506 102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV 141 (632)
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc
Confidence 33 56889999999887655555678999999999997653
No 263
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.00 E-value=6.3e-09 Score=108.15 Aligned_cols=165 Identities=19% Similarity=0.236 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccee--eEEEEEEEeCCeEEEEEEEeCCCchhhhh-----hhHhhhcccc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGV--DFMIKTVEINNERIKLQIWDTAGQERFRS-----ITQSYYRSAH 81 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~--d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-----l~~~~~r~AD 81 (730)
||+++|++++||||+.+-+..+..+... ..+|. +.....+...+ .+.+++||.||+..+.. .....+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 7999999999999999888765433221 22222 22233333232 36899999999975433 3467789999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++|+|+|+.+.+-.+++..+..-+.... ..+|++.+.+...|+|+..++..
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~-----------------------------~~sp~~~v~vfiHK~D~l~~~~r 129 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALR-----------------------------QYSPNIKVFVFIHKMDLLSEDER 129 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHH-----------------------------HHSTT-EEEEEEE-CCCS-HHHH
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHH-----------------------------HhCCCCeEEEEEeecccCCHHHH
Confidence 9999999996654445443333332211 13478888899999999865543
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC---CeEEEEecCCCCCh
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD---MYYLETSAKASDNV 238 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg---~~fvEtSAktG~GV 238 (730)
...+. -..+...+.+...+ +.|+.||-.. +.+
T Consensus 130 ~~~~~--------------------------------------------~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sl 164 (232)
T PF04670_consen 130 EEIFR--------------------------------------------DIQQRIRDELEDLGIEDITFFLTSIWD-ESL 164 (232)
T ss_dssp HHHHH--------------------------------------------HHHHHHHHHHHHTT-TSEEEEEE-TTS-THH
T ss_pred HHHHH--------------------------------------------HHHHHHHHHhhhccccceEEEeccCcC-cHH
Confidence 22110 01233444455555 7889998876 578
Q ss_pred HHHHHHHHHHH
Q psy17467 239 EKLFMQIAAEL 249 (730)
Q Consensus 239 eeLFe~Li~~l 249 (730)
-++|..++..+
T Consensus 165 y~A~S~Ivq~L 175 (232)
T PF04670_consen 165 YEAWSKIVQKL 175 (232)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 88888887766
No 264
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.99 E-value=1.8e-09 Score=116.25 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----hhHhh---hcccc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----ITQSY---YRSAH 81 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----l~~~~---~r~AD 81 (730)
.|-+||.||+|||||++.+...+.....+|.++..+.-..+.+.+ .-.+.+=|+||..+-.+ +...+ +..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 467999999999999999999988888788888777777777632 34588999998754333 23333 66899
Q ss_pred EEEEEeecCCCCc---hhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 82 ALILVYDISCQPT---FDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 82 aIILVyDvtd~eS---fe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
+++.|+|++..+- .++......++..+.. .-.+.|.+||.||+|+..+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~-----------------------------~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP-----------------------------KLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-----------------------------HhccCceEEEEeccCCCcC
Confidence 9999999986554 5565656666655531 1134566667777774321
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-EEEEecCCCCC
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDN 237 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-fvEtSAktG~G 237 (730)
++ --.+....+.+..+.. ++.+||.+++|
T Consensus 291 ~e--------------------------------------------------~~~~~~~~l~~~~~~~~~~~ISa~t~~g 320 (369)
T COG0536 291 EE--------------------------------------------------ELEELKKALAEALGWEVFYLISALTREG 320 (369)
T ss_pred HH--------------------------------------------------HHHHHHHHHHHhcCCCcceeeehhcccC
Confidence 11 0112233344444433 22299999999
Q ss_pred hHHHHHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAELMEKL 253 (730)
Q Consensus 238 VeeLFe~Li~~l~e~~ 253 (730)
++++...+.+.+.+..
T Consensus 321 ~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 321 LDELLRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998886554
No 265
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.8e-09 Score=119.12 Aligned_cols=156 Identities=18% Similarity=0.247 Sum_probs=108.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC-eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN-ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg-~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
|+++|.-..|||||+..+-.......-.-.++.......+..+. ..-.+.|+||||++.|..++..-..-+|++|||.|
T Consensus 8 VtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa 87 (509)
T COG0532 8 VTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVA 87 (509)
T ss_pred EEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEE
Confidence 89999999999999999988776554434444344444555541 22468999999999999999888888999999999
Q ss_pred cCC---CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 89 ISC---QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 89 vtd---~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
++| +++.+.+. +. -..+.|++++.||+|..+......
T Consensus 88 ~dDGv~pQTiEAI~-------ha-------------------------------k~a~vP~iVAiNKiDk~~~np~~v-- 127 (509)
T COG0532 88 ADDGVMPQTIEAIN-------HA-------------------------------KAAGVPIVVAINKIDKPEANPDKV-- 127 (509)
T ss_pred ccCCcchhHHHHHH-------HH-------------------------------HHCCCCEEEEEecccCCCCCHHHH--
Confidence 998 44444432 11 126789999999999974321100
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCCCChHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG~GVeeLFe 243 (730)
+.++.+..+. +..+| ..|+++||++|+|+++|.+
T Consensus 128 -------------------------------------~~el~~~gl~-------~E~~gg~v~~VpvSA~tg~Gi~eLL~ 163 (509)
T COG0532 128 -------------------------------------KQELQEYGLV-------PEEWGGDVIFVPVSAKTGEGIDELLE 163 (509)
T ss_pred -------------------------------------HHHHHHcCCC-------HhhcCCceEEEEeeccCCCCHHHHHH
Confidence 0011100111 11222 5799999999999999999
Q ss_pred HHHHHH
Q psy17467 244 QIAAEL 249 (730)
Q Consensus 244 ~Li~~l 249 (730)
.+.-..
T Consensus 164 ~ill~a 169 (509)
T COG0532 164 LILLLA 169 (509)
T ss_pred HHHHHH
Confidence 887554
No 266
>PLN03127 Elongation factor Tu; Provisional
Probab=98.98 E-value=1.9e-08 Score=113.75 Aligned_cols=87 Identities=20% Similarity=0.154 Sum_probs=60.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcC------CCC----------CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQG------VFP----------PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~------~f~----------~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
+..++|+++|..++|||||+++|++. ... ....+.+ +.......+.....++.++||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGi--Ti~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGI--TIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCc--eeeeeEEEEcCCCeEEEEEECCCccc
Confidence 45689999999999999999999732 110 0111233 33344445544456789999999987
Q ss_pred hhhhhHhhhccccEEEEEeecCCCC
Q psy17467 69 FRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 69 ~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
|..........+|++++|+|+++..
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~ 161 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGP 161 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCC
Confidence 7654445566799999999988653
No 267
>KOG3905|consensus
Probab=98.97 E-value=1.2e-08 Score=108.78 Aligned_cols=207 Identities=16% Similarity=0.161 Sum_probs=136.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEE--eCCeEEEEEEEeCCCchhhhhhhHhhhccc----cE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVE--INNERIKLQIWDTAGQERFRSITQSYYRSA----HA 82 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~--vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A----Da 82 (730)
+|+|+|+.++|||||+.++.+.+ .+.+..|.+|....+. ..+...++.+|-+.|.-....+....+... -.
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 69999999999999999998866 3334444444443333 334456789999988766666555443322 37
Q ss_pred EEEEeecCCCCc-hhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHH------Hhhhc----ccccCCCCCceEEecc
Q psy17467 83 LILVYDISCQPT-FDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEM------ASAAG----LLCTVDPALATALASD 151 (730)
Q Consensus 83 IILVyDvtd~eS-fe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i------~~~~g----~~~~~~~~~PVVLVGN 151 (730)
+||+.|++++-. ++.++.|..-+.++...-. .+-+..++. .|+.. -.+..+|...--++++
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~--------i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~ 202 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLK--------IPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGS 202 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccC
Confidence 899999999954 5788999988877653210 111222221 12222 2233334444345555
Q ss_pred CCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccccccc----C-CCCC-------hHHHHHH
Q psy17467 152 KTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRE----D-REIP-------TEVGEDF 219 (730)
Q Consensus 152 K~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~----~-R~Vs-------~ee~~~l 219 (730)
-.|-. ...+.-+..+..+...|+++|.+|||.- . .... ....++|
T Consensus 203 ~~de~-----------------------~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkF 259 (473)
T KOG3905|consen 203 SADEH-----------------------VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKF 259 (473)
T ss_pred ccccc-----------------------cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHH
Confidence 44432 1223345566778899999999999982 1 1111 1246888
Q ss_pred HHhcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 220 AKRHDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 220 ak~lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
|-.+|+..+.+|+|+..||+-++..|++.+
T Consensus 260 CLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 260 CLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred HHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 999999999999999999999999999876
No 268
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.97 E-value=1.4e-08 Score=114.68 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=64.6
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcC--CCC------------------------CCCC---CcceeeEEEEEEEe
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG--VFP------------------------PGQG---ATIGVDFMIKTVEI 51 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~------------------------~~~~---pTig~d~~~~~i~v 51 (730)
|...+..++|+++|..++|||||+.+|+.. ... .+.. -.-|.+.......+
T Consensus 1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 455667799999999999999999998751 100 0000 01122222333334
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467 52 NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 52 dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~ 92 (730)
......+.|+||||+.+|..........+|++|+|+|+++.
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G 121 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG 121 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence 44457899999999999877667778899999999999864
No 269
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.95 E-value=1.2e-08 Score=102.19 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----hh-------H
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQ--GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----IT-------Q 74 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~--~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----l~-------~ 74 (730)
++|+++|.+|||||||+|.+++....... .+..+.+.......+++ ..+.++||||..+... +. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987543222 12223333344445566 5789999999643211 11 1
Q ss_pred hhhccccEEEEEeecCC
Q psy17467 75 SYYRSAHALILVYDISC 91 (730)
Q Consensus 75 ~~~r~ADaIILVyDvtd 91 (730)
....++|++|+|.|+.+
T Consensus 79 ~~~~g~~~illVi~~~~ 95 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR 95 (196)
T ss_pred hcCCCCEEEEEEEECCC
Confidence 22457899999999876
No 270
>PRK12739 elongation factor G; Reviewed
Probab=98.94 E-value=2.3e-08 Score=118.63 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=66.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcC--CC------CC----------CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQG--VF------PP----------GQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~--~f------~~----------~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e 67 (730)
...+|+|+|.+++|||||+++|+.. .. .. .....++.+.....+.+++ .++.++||||+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHH
Confidence 4568999999999999999999742 10 00 0122344444455566665 779999999998
Q ss_pred hhhhhhHhhhccccEEEEEeecCCCCchh
Q psy17467 68 RFRSITQSYYRSAHALILVYDISCQPTFD 96 (730)
Q Consensus 68 ~~~sl~~~~~r~ADaIILVyDvtd~eSfe 96 (730)
++...+...++.+|++|+|+|+++...-+
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~q 113 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQ 113 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHH
Confidence 88777888899999999999998765443
No 271
>KOG0462|consensus
Probab=98.92 E-value=5.9e-09 Score=117.27 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=107.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCC--------------CCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPG--------------QGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERF 69 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~--------------~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~ 69 (730)
..=++.||-.-.-|||||..|++...- ... -...+++--....+.+ +|+.+.++++||||+-+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 334688999899999999999974211 110 1122222222223333 467899999999999999
Q ss_pred hhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEe
Q psy17467 70 RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALA 149 (730)
Q Consensus 70 ~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLV 149 (730)
..-....+.-||++|||.|++....-+.+..++..+. .+..+|.|
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----------------------------------~~L~iIpV 183 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----------------------------------AGLAIIPV 183 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----------------------------------cCCeEEEe
Confidence 9888888999999999999998777666655444432 45566777
Q ss_pred ccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH----HHHHHhcCC
Q psy17467 150 SDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG----EDFAKRHDM 225 (730)
Q Consensus 150 GNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~----~~lak~lg~ 225 (730)
.||+|+... ..++. .++....+.
T Consensus 184 lNKIDlp~a-----------------------------------------------------dpe~V~~q~~~lF~~~~~ 210 (650)
T KOG0462|consen 184 LNKIDLPSA-----------------------------------------------------DPERVENQLFELFDIPPA 210 (650)
T ss_pred eeccCCCCC-----------------------------------------------------CHHHHHHHHHHHhcCCcc
Confidence 777777421 11222 222222344
Q ss_pred eEEEEecCCCCChHHHHHHHHHHH
Q psy17467 226 YYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 226 ~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
+.+.+|||+|.|+++++++|++.+
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhC
Confidence 789999999999999999999876
No 272
>PRK12740 elongation factor G; Reviewed
Probab=98.91 E-value=1.2e-08 Score=120.54 Aligned_cols=85 Identities=21% Similarity=0.191 Sum_probs=61.4
Q ss_pred EcCCCCCHHHHHHHHHcCCCC--------C-----C-----CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH
Q psy17467 13 VGNAGVGKTCLVRRFTQGVFP--------P-----G-----QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ 74 (730)
Q Consensus 13 LG~pnVGKSSLLnrLl~~~f~--------~-----~-----~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~ 74 (730)
+|.+|+|||||+++|+...-. . + ....++.......+.+++ +.+.+|||||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999642110 0 0 012233334444555655 7899999999988877788
Q ss_pred hhhccccEEEEEeecCCCCchhhhH
Q psy17467 75 SYYRSAHALILVYDISCQPTFDCLT 99 (730)
Q Consensus 75 ~~~r~ADaIILVyDvtd~eSfe~L~ 99 (730)
.+++.+|++|+|+|.++..+.+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~ 103 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTET 103 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHH
Confidence 8899999999999999876665443
No 273
>PRK00007 elongation factor G; Reviewed
Probab=98.90 E-value=3.6e-08 Score=117.10 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=64.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHc--CCCC-C---C------------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQ--GVFP-P---G------------QGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~--~~f~-~---~------------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e 67 (730)
...+|+|+|.+|+|||||+++|+. +... . . ....++.+.....+.+++ ..+.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcH
Confidence 356999999999999999999973 2110 0 0 122344444445555655 789999999998
Q ss_pred hhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467 68 RFRSITQSYYRSAHALILVYDISCQPTFDC 97 (730)
Q Consensus 68 ~~~sl~~~~~r~ADaIILVyDvtd~eSfe~ 97 (730)
++..-....++.+|++|+|+|++...+-+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt 116 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS 116 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh
Confidence 876666677889999999999887655544
No 274
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.89 E-value=6.1e-09 Score=124.06 Aligned_cols=96 Identities=22% Similarity=0.223 Sum_probs=69.9
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcC---------------CCCCC---CCCcceeeEEEEEEEeCCeEEEEEEEe
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG---------------VFPPG---QGATIGVDFMIKTVEINNERIKLQIWD 62 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~---------------~f~~~---~~pTig~d~~~~~i~vdg~~v~LqLwD 62 (730)
|+..+...+|+|+|..++|||||+++|+.. .+... ...|+........+.+++..+.+.+||
T Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD 92 (720)
T TIGR00490 13 MWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID 92 (720)
T ss_pred hhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence 455566789999999999999999999742 11111 112333223333344566679999999
Q ss_pred CCCchhhhhhhHhhhccccEEEEEeecCCCCchh
Q psy17467 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFD 96 (730)
Q Consensus 63 TpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe 96 (730)
|||+.+|.......++.+|++|+|+|+.+....+
T Consensus 93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~ 126 (720)
T TIGR00490 93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ 126 (720)
T ss_pred CCCccccHHHHHHHHHhcCEEEEEEecCCCCCcc
Confidence 9999988877788899999999999998754333
No 275
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.86 E-value=5e-09 Score=109.47 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=74.9
Q ss_pred hhhhhhhHhhhccccEEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc
Q psy17467 67 ERFRSITQSYYRSAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA 145 (730)
Q Consensus 67 e~~~sl~~~~~r~ADaIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P 145 (730)
+++..+.+.+++++|++++|||++++. ||+.+.+|+..+.. .++|
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----------------------------------~~i~ 69 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----------------------------------QNIE 69 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------------------------------CCCC
Confidence 567777888999999999999999887 89999999876532 4577
Q ss_pred eEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC
Q psy17467 146 TALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM 225 (730)
Q Consensus 146 VVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~ 225 (730)
+++|+||+||.++. .+..+.++.++ ..|+
T Consensus 70 ~vIV~NK~DL~~~~--------------------------------------------------~~~~~~~~~~~-~~g~ 98 (245)
T TIGR00157 70 PIIVLNKIDLLDDE--------------------------------------------------DMEKEQLDIYR-NIGY 98 (245)
T ss_pred EEEEEECcccCCCH--------------------------------------------------HHHHHHHHHHH-HCCC
Confidence 88888988885321 22223444444 4789
Q ss_pred eEEEEecCCCCChHHHHHHHHH
Q psy17467 226 YYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 226 ~fvEtSAktG~GVeeLFe~Li~ 247 (730)
.++++||++|.||+++|+.+.+
T Consensus 99 ~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 99 QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred eEEEEecCCchhHHHHHhhhcC
Confidence 9999999999999999998764
No 276
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.83 E-value=2.8e-08 Score=110.44 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=107.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCC---------------CCCCCcceeeEEEEEEEe---CCeEEEEEEEeCCCchh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFP---------------PGQGATIGVDFMIKTVEI---NNERIKLQIWDTAGQER 68 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~---------------~~~~pTig~d~~~~~i~v---dg~~v~LqLwDTpG~e~ 68 (730)
.=+..|+-.-.-|||||..|++...-. ..-...+++-.....+.+ +|+.+.++++||||+-+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 346788888899999999999752111 111122333333334444 56889999999999999
Q ss_pred hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEE
Q psy17467 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATAL 148 (730)
Q Consensus 69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVL 148 (730)
|.--....+..|.+.+||.|++..-.-+.+...+..+.+ +.-++-
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----------------------------------~LeIiP 133 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----------------------------------NLEIIP 133 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----------------------------------CcEEEE
Confidence 887777788899999999999998777777766655543 223344
Q ss_pred eccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC---
Q psy17467 149 ASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM--- 225 (730)
Q Consensus 149 VGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~--- 225 (730)
|.||+||. ... ...-.++....+|+
T Consensus 134 ViNKIDLP---------------------------------------------------~Ad-pervk~eIe~~iGid~~ 161 (603)
T COG0481 134 VLNKIDLP---------------------------------------------------AAD-PERVKQEIEDIIGIDAS 161 (603)
T ss_pred eeecccCC---------------------------------------------------CCC-HHHHHHHHHHHhCCCcc
Confidence 44555553 211 12233445555676
Q ss_pred eEEEEecCCCCChHHHHHHHHHHH
Q psy17467 226 YYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 226 ~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
..+.||||+|.||+++++.|++.+
T Consensus 162 dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 162 DAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred hheeEecccCCCHHHHHHHHHhhC
Confidence 389999999999999999999877
No 277
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.81 E-value=6.9e-08 Score=109.53 Aligned_cols=88 Identities=10% Similarity=0.086 Sum_probs=56.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCCc----ceeeEEE-----------EEEEeC-C------------
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVF---PPGQGAT----IGVDFMI-----------KTVEIN-N------------ 53 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f---~~~~~pT----ig~d~~~-----------~~i~vd-g------------ 53 (730)
...++|.++|.-..|||||+..|++..- ...-... +|..... ....+. +
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4568999999999999999999996321 1111111 1111000 000000 0
Q ss_pred ---eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467 54 ---ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 54 ---~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~ 92 (730)
....+.|+|+||+++|..-.......+|++++|+|+++.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 023689999999998876555667789999999999874
No 278
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.81 E-value=8e-08 Score=109.11 Aligned_cols=215 Identities=15% Similarity=0.202 Sum_probs=129.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC--CeEEEEEEEeCCCchhhhhhhHhhhcc----cc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN--NERIKLQIWDTAGQERFRSITQSYYRS----AH 81 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd--g~~v~LqLwDTpG~e~~~sl~~~~~r~----AD 81 (730)
-.|+|+|+.++|||||+.+|.+.+ .+.++.+.+|....+.-+ +....+.+|-+.|...+..+.+..+.. --
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 369999999999999999987543 344666666655544332 334678999998876666666544432 24
Q ss_pred EEEEEeecCCCCch-hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhh---cccccCC-CCCceEEeccCCCcc
Q psy17467 82 ALILVYDISCQPTF-DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAA---GLLCTVD-PALATALASDKTDLD 156 (730)
Q Consensus 82 aIILVyDvtd~eSf-e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~---g~~~~~~-~~~PVVLVGNK~DL~ 156 (730)
+||+|.|.+.|-.+ +.+..|+.-+..+... . -+....-.+..+++.... .-..... +..|..-. +...-.
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~-L---~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~-~~~~~~ 177 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEK-L---KSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRS-PSSSSS 177 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHH-h---hccHHHHHHHHHHHHHHHHHhhhccccccccCccccc-cccccc
Confidence 89999999999876 6888899887776531 0 000000001111222211 1111000 11111000 000000
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC---CC--CCh-------HHHHHHHHhcC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED---RE--IPT-------EVGEDFAKRHD 224 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~---R~--Vs~-------ee~~~lak~lg 224 (730)
+++ ....+....+...+...|++||.+|+|.-. +. ... ...+.+|-.+|
T Consensus 178 ~~~-------------------~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG 238 (472)
T PF05783_consen 178 DDE-------------------SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG 238 (472)
T ss_pred ccc-------------------cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC
Confidence 000 011122334556677899999999999631 11 111 22677888999
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 225 MYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 225 ~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
+.++.||++...|++.++..|.+.+
T Consensus 239 AsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 239 ASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CeEEEeeccccccHHHHHHHHHHHh
Confidence 9999999999999999999988776
No 279
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.80 E-value=1.1e-07 Score=102.99 Aligned_cols=134 Identities=17% Similarity=0.218 Sum_probs=86.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC----------chhhhHHHHHHHHHHhcccceEEEEeccCch
Q psy17467 55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP----------TFDCLTDWLREIEEYASFKVLRVLVGGTSGL 124 (730)
Q Consensus 55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e----------Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl 124 (730)
.+.+.+||++|+...+..|..++.++++||+|+|+++-. .+++....++.+...
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~---------------- 223 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS---------------- 223 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC----------------
Confidence 377899999999999999999999999999999998742 122222223332211
Q ss_pred hhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccc
Q psy17467 125 KIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKI 204 (730)
Q Consensus 125 ~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~ 204 (730)
. .-.+.|++|++||.|+.... +....+..|+|...+.+
T Consensus 224 ---------~-----~~~~~pill~~NK~D~f~~k-----i~~~~l~~~fp~y~g~~----------------------- 261 (317)
T cd00066 224 ---------R-----WFANTSIILFLNKKDLFEEK-----IKKSPLTDYFPDYTGPP----------------------- 261 (317)
T ss_pred ---------c-----cccCCCEEEEccChHHHHHh-----hcCCCccccCCCCCCCC-----------------------
Confidence 1 11578999999999987532 11112344555553220
Q ss_pred cccCCCCChHHHHHHHH----------hcCCeEEEEecCCCCChHHHHHHHHHHHHHH
Q psy17467 205 DREDREIPTEVGEDFAK----------RHDMYYLETSAKASDNVEKLFMQIAAELMEK 252 (730)
Q Consensus 205 DL~~R~Vs~ee~~~lak----------~lg~~fvEtSAktG~GVeeLFe~Li~~l~e~ 252 (730)
-+.+.+..+.. ...+..+.++|..-.++..+|+.+.+.++..
T Consensus 262 ------~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 262 ------NDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred ------CCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 11222222211 1234567789999999999999998888654
No 280
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.78 E-value=4.3e-08 Score=119.77 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe-----------EE-----EEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 18 VGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-----------RI-----KLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 18 VGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~-----------~v-----~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
|+||||+.++.+......-.-.++.......++++.. .. .+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 3599999999987664433233332222333333310 01 2899999999999888888888999
Q ss_pred EEEEEeecCCC
Q psy17467 82 ALILVYDISCQ 92 (730)
Q Consensus 82 aIILVyDvtd~ 92 (730)
++++|+|+++.
T Consensus 552 ivlLVVDa~~G 562 (1049)
T PRK14845 552 LAVLVVDINEG 562 (1049)
T ss_pred EEEEEEECccc
Confidence 99999999873
No 281
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.77 E-value=8.3e-08 Score=102.16 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=62.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh----
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFR---- 70 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~---- 70 (730)
|++||.||||||||+|++++.......+|..+.++....+.+.+. ...++++|+||..+-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998887766788777777777777653 2359999999964321
Q ss_pred hhhH---hhhccccEEEEEeecC
Q psy17467 71 SITQ---SYYRSAHALILVYDIS 90 (730)
Q Consensus 71 sl~~---~~~r~ADaIILVyDvt 90 (730)
.+.. ..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 2222 3367899999999974
No 282
>KOG1145|consensus
Probab=98.77 E-value=6.2e-08 Score=109.21 Aligned_cols=107 Identities=19% Similarity=0.287 Sum_probs=78.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
|-|+|.-.-|||||+..|-+......-.-.++.....-.+.. +| -.+.|.||||+..|..++..-..-+|++|||..
T Consensus 156 VTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA 233 (683)
T KOG1145|consen 156 VTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVVA 233 (683)
T ss_pred EEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence 778999999999999999887664433222222222223333 44 678999999999999999888888999999999
Q ss_pred cCCC---CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 89 ISCQ---PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 89 vtd~---eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
+.|. ++.+.++ .+-+.+.|+|++.||+|..
T Consensus 234 adDGVmpQT~EaIk--------------------------------------hAk~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 234 ADDGVMPQTLEAIK--------------------------------------HAKSANVPIVVAINKIDKP 266 (683)
T ss_pred ccCCccHhHHHHHH--------------------------------------HHHhcCCCEEEEEeccCCC
Confidence 9984 3444433 1234788999999999975
No 283
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.68 E-value=4.5e-07 Score=99.39 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=85.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC----------chhhhHHHHHHHHHHhcccceEEEEeccCchh
Q psy17467 56 IKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP----------TFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125 (730)
Q Consensus 56 v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e----------Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~ 125 (730)
+.+.+||++|+...++.|..++.++++||+|.|+++-. .+++....++.+...
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~----------------- 246 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS----------------- 246 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC-----------------
Confidence 56899999999999999999999999999999999732 222222233333221
Q ss_pred hHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccccc
Q psy17467 126 IVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKID 205 (730)
Q Consensus 126 ~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~D 205 (730)
. .-.+.|++|++||.|+.... +.......++|.+.+.
T Consensus 247 --------~-----~~~~~piil~~NK~D~~~~K-----l~~~~l~~~fp~y~g~------------------------- 283 (342)
T smart00275 247 --------R-----WFANTSIILFLNKIDLFEEK-----IKKVPLVDYFPDYKGP------------------------- 283 (342)
T ss_pred --------c-----cccCCcEEEEEecHHhHHHH-----hCCCchhccCCCCCCC-------------------------
Confidence 1 11578999999999997532 1111223344444221
Q ss_pred ccCCCCChHHHHHHHH-----h------cCCeEEEEecCCCCChHHHHHHHHHHHHHHH
Q psy17467 206 REDREIPTEVGEDFAK-----R------HDMYYLETSAKASDNVEKLFMQIAAELMEKL 253 (730)
Q Consensus 206 L~~R~Vs~ee~~~lak-----~------lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~ 253 (730)
-+.+.+..+.. . ..+-.+.++|..-.++..+|+.+...+....
T Consensus 284 -----~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 284 -----NDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred -----CCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 01222222211 1 2245678889999999999999888886554
No 284
>PRK09866 hypothetical protein; Provisional
Probab=98.67 E-value=4.3e-07 Score=105.31 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPG 35 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~ 35 (730)
+.++++|..|+|||||+|.+++....++
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt 97 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPN 97 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccC
Confidence 6789999999999999999998655443
No 285
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.66 E-value=8.9e-08 Score=100.90 Aligned_cols=174 Identities=17% Similarity=0.252 Sum_probs=104.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEE-EEEeCCeEEEEEEEeCCCchh-------hhhhhHhhhc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIK-TVEINNERIKLQIWDTAGQER-------FRSITQSYYR 78 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~-~i~vdg~~v~LqLwDTpG~e~-------~~sl~~~~~r 78 (730)
.++|+++|..|||||||+|++..+...+...-.+|.+.... ...+++ -.+.|||+||..+ ++.....++.
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~ 116 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYLP 116 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHhh
Confidence 48899999999999999999997655443311222222211 122344 4589999999654 5666677888
Q ss_pred cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
..|.++++.|..|+.==-+ ..++.++.... -+.+++++.|.+|....
T Consensus 117 ~~DLvL~l~~~~draL~~d-~~f~~dVi~~~--------------------------------~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 117 KLDLVLWLIKADDRALGTD-EDFLRDVIILG--------------------------------LDKRVLFVVTQADRAEP 163 (296)
T ss_pred hccEEEEeccCCCccccCC-HHHHHHHHHhc--------------------------------cCceeEEEEehhhhhcc
Confidence 9999999999988642212 23444443322 22567777888886531
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc--CCeEEEEecCCCC
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH--DMYYLETSAKASD 236 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l--g~~fvEtSAktG~ 236 (730)
. ..=..+++...|.+ ++-..+.+..+.+.. --+++..|+..+.
T Consensus 164 ~-------------------------~~W~~~~~~p~~a~----------~qfi~~k~~~~~~~~q~V~pV~~~~~r~~w 208 (296)
T COG3596 164 G-------------------------REWDSAGHQPSPAI----------KQFIEEKAEALGRLFQEVKPVVAVSGRLPW 208 (296)
T ss_pred c-------------------------cccccccCCCCHHH----------HHHHHHHHHHHHHHHhhcCCeEEeccccCc
Confidence 0 00011112222211 111222232222222 1267888899999
Q ss_pred ChHHHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAELM 250 (730)
Q Consensus 237 GVeeLFe~Li~~l~ 250 (730)
|++++...+++.+.
T Consensus 209 gl~~l~~ali~~lp 222 (296)
T COG3596 209 GLKELVRALITALP 222 (296)
T ss_pred cHHHHHHHHHHhCc
Confidence 99999999998874
No 286
>KOG1707|consensus
Probab=98.65 E-value=2.2e-07 Score=105.57 Aligned_cols=158 Identities=19% Similarity=0.309 Sum_probs=115.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+++.++|+.++|||.+++.|+++.+...+..+....+....+...|....+.+-|.+-. ....+.+.- ..||++++
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 4589999999999999999999998887766666665666677777788888889888754 333333333 78999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
+||++++.||+.+...++.-. .....|+++|++|.|+++..+
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~---------------------------------~~~~~Pc~~va~K~dlDe~~Q----- 543 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYF---------------------------------DLYKIPCLMVATKADLDEVPQ----- 543 (625)
T ss_pred ecccCCchHHHHHHHHHHHhh---------------------------------hccCCceEEEeeccccchhhh-----
Confidence 999999999988765443321 125788999999999975321
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-EEEEecCCCCChHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-fvEtSAktG~GVeeLFe~ 244 (730)
..+... .++|+++|++ -+..|.++... .++|..
T Consensus 544 --------------------------------------------~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~k 577 (625)
T KOG1707|consen 544 --------------------------------------------RYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIK 577 (625)
T ss_pred --------------------------------------------ccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence 112222 7889999983 56667664223 889988
Q ss_pred HHHHH
Q psy17467 245 IAAEL 249 (730)
Q Consensus 245 Li~~l 249 (730)
|+...
T Consensus 578 L~~~A 582 (625)
T KOG1707|consen 578 LATMA 582 (625)
T ss_pred HHHhh
Confidence 88766
No 287
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.64 E-value=3.7e-07 Score=98.58 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=55.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH-------hh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ-------SY 76 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~-------~~ 76 (730)
...++|+++|.+||||||++|++++..... ...+..+.........++| ..+.+|||||..+...... .+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 356899999999999999999999875422 1222223233233334455 7899999999765432222 11
Q ss_pred h--ccccEEEEEeecCC
Q psy17467 77 Y--RSAHALILVYDISC 91 (730)
Q Consensus 77 ~--r~ADaIILVyDvtd 91 (730)
+ ...|++++|.+++.
T Consensus 114 l~~~g~DvVLyV~rLD~ 130 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDA 130 (313)
T ss_pred hhcCCCCEEEEEeccCc
Confidence 1 25899999976653
No 288
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.64 E-value=2e-07 Score=87.89 Aligned_cols=136 Identities=22% Similarity=0.172 Sum_probs=91.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh----HhhhccccEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT----QSYYRSAHALI 84 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~----~~~~r~ADaII 84 (730)
|++++|..|+|||||.+.+-+.... |.-| ..++++++ -.+||||..-....| .....++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKT-------QAve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKT-------QAVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hccc-------ceeeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999876532 2122 23344332 146999853222222 23466899999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|-++++++|--.-. + ..--..|+|-|.+|.|+.++.
T Consensus 70 ~v~~and~~s~f~p~------------------------------------f--~~~~~k~vIgvVTK~DLaed~----- 106 (148)
T COG4917 70 YVHAANDPESRFPPG------------------------------------F--LDIGVKKVIGVVTKADLAEDA----- 106 (148)
T ss_pred eeecccCccccCCcc------------------------------------c--ccccccceEEEEecccccchH-----
Confidence 999999987632210 0 011234467777788876432
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM 243 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe 243 (730)
+.+..++|..+-|+ ++|++|+.++.||+++++
T Consensus 107 -----------------------------------------------dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 107 -----------------------------------------------DISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred -----------------------------------------------hHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 23556777777787 699999999999999999
Q ss_pred HHHH
Q psy17467 244 QIAA 247 (730)
Q Consensus 244 ~Li~ 247 (730)
.+..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 8764
No 289
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.60 E-value=6.1e-07 Score=94.31 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=56.2
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh---h------
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS---I------ 72 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s---l------ 72 (730)
+-+..++|+++|.+|||||||+|.+++...... ..+..+..........++ ..+.+|||||..+... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 345679999999999999999999998764322 222222233333444555 6789999999754411 1
Q ss_pred -hHhhhc--cccEEEEEeecCC
Q psy17467 73 -TQSYYR--SAHALILVYDISC 91 (730)
Q Consensus 73 -~~~~~r--~ADaIILVyDvtd 91 (730)
...++. ..|++++|..++.
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCC
Confidence 112332 5688888876654
No 290
>KOG1917|consensus
Probab=98.58 E-value=1.7e-08 Score=117.76 Aligned_cols=87 Identities=64% Similarity=1.043 Sum_probs=63.5
Q ss_pred HHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeeec----cccccchhhHHHhHhhh
Q psy17467 255 EKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVS----GISQIRSDIVKSLSLYY 330 (730)
Q Consensus 255 ~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~----~~~~~~~~~~~~l~~~~ 330 (730)
++.....++|.|+++|+|+.+.+|++.+.+|.++.++...+-++.+++.+|-.+...-+ ..+...+++.|+|.+||
T Consensus 14 ekl~ilndr~~G~~Tr~ynikka~gdsk~kp~~l~dk~~eg~ik~iv~~fp~~d~~~~n~~~~ylqkk~~ei~k~l~lyy 93 (1125)
T KOG1917|consen 14 EKLSILNDRGEGMLTRIYNIKKACGDSKTKPSFLIDKHLEGAIKFIVRKFPVVDMRRLNQILEYLQKKKPEIFKSLSLYY 93 (1125)
T ss_pred ccceeecchhhhhHHHHhChhhhcCCCcCCchhhhccchhhHHHHHHHhhhHHHHHhHHHHHHHHhHhhHHHHhccceee
Confidence 34455678899999999999999999999999999999999999989888877744433 22334445555555555
Q ss_pred hhhhccCCcee
Q psy17467 331 YTFVDLLHFKD 341 (730)
Q Consensus 331 ~~~~~~~~~~~ 341 (730)
.+|+|++++||
T Consensus 94 ~tf~dl~~~kd 104 (1125)
T KOG1917|consen 94 ITFVDLLDLKD 104 (1125)
T ss_pred eechhhhhhhh
Confidence 55555555443
No 291
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=6.5e-07 Score=98.03 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC----------------CeEEEEEEEeCCCchh---
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN----------------NERIKLQIWDTAGQER--- 68 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd----------------g~~v~LqLwDTpG~e~--- 68 (730)
+++-|||.||||||||+|.++........+|..++++....+.+. -....++++|++|.-.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 789999999999999999999988766777988888877776652 1245789999998543
Q ss_pred -hhhhhHhh---hccccEEEEEeecCC
Q psy17467 69 -FRSITQSY---YRSAHALILVYDISC 91 (730)
Q Consensus 69 -~~sl~~~~---~r~ADaIILVyDvtd 91 (730)
-..+..++ +|.+|+|+.|+|+.+
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 33344444 789999999999874
No 292
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=98.56 E-value=8.4e-09 Score=90.44 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=50.4
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCceeeeccccccchhhHHHhHhhhhhhhccCCceeEEEee
Q psy17467 281 AKSKPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLS 346 (730)
Q Consensus 281 ~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (730)
..++||. .++..+..|++|++..||+|+.+|+.++.++++|.|||.+.+|+.+++-|+|+++.++
T Consensus 16 ~~~~pp~-~g~~~Ki~Y~tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~l~~R 80 (80)
T PF14714_consen 16 ERHPPPS-KGKRLKIYYATQVGTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIRLIFR 80 (80)
T ss_dssp CCS--SE-TTCC--EEEEEEEETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--EEEEE
T ss_pred HhCCCCC-CCceeEEEEEEeCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEEEEeC
Confidence 4556665 8899999999999999999999999999999999999999999999999999999885
No 293
>KOG0705|consensus
Probab=98.52 E-value=2.6e-07 Score=104.01 Aligned_cols=164 Identities=21% Similarity=0.364 Sum_probs=123.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+|+-|||..++|||+|+.||+.+.|.....|.-| .+.+.+.+++....+-+.|.+|.. -.+|..++|++||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence 458999999999999999999999999887766655 567777888888999999999843 2467789999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
||.+.+..+|+.+..+...+..+. ....+|.+++|++.-...
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r------------------------------~r~~i~l~lvgtqd~iS~-------- 143 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYR------------------------------NISDLPLILVGTQDHISA-------- 143 (749)
T ss_pred EEEeccccCHHHHHHHHhhccccc------------------------------ccccchHHhhcCcchhhc--------
Confidence 999999999999886665543322 124556666665322210
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCChHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
+ ..+.+...++++++. ...|.+++++|.+|.+++.+|..
T Consensus 144 ---------------------------------------~-~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 144 ---------------------------------------K-RPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQE 183 (749)
T ss_pred ---------------------------------------c-cccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHH
Confidence 1 124455566666554 44689999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 245 IAAELMEKLA 254 (730)
Q Consensus 245 Li~~l~e~~~ 254 (730)
++..+.....
T Consensus 184 ~~~k~i~~~~ 193 (749)
T KOG0705|consen 184 VAQKIVQLRK 193 (749)
T ss_pred HHHHHHHHHh
Confidence 9888766533
No 294
>PRK13768 GTPase; Provisional
Probab=98.48 E-value=5.8e-07 Score=94.43 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.6
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 225 MYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 225 ~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.+++++||+++.|++++.++|.+.+
T Consensus 222 ~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 222 VRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHc
Confidence 5789999999999999999998765
No 295
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.47 E-value=5.7e-07 Score=109.13 Aligned_cols=121 Identities=14% Similarity=0.135 Sum_probs=81.9
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-----------CCCC-----cceeeEEEEEEEe-------------
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-----------GQGA-----TIGVDFMIKTVEI------------- 51 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-----------~~~p-----Tig~d~~~~~i~v------------- 51 (730)
|++.+..-+|+|+|..++|||||+.+|+...-.. ++.+ .++.......+.+
T Consensus 13 ~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 13 MDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred hhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 3455666799999999999999999998532110 0101 1111111122222
Q ss_pred -CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHH
Q psy17467 52 -NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEM 130 (730)
Q Consensus 52 -dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i 130 (730)
++..+.++++||||+.+|..-....++.+|++|+|+|+++....+...-|...+
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~------------------------- 147 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL------------------------- 147 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH-------------------------
Confidence 123578999999999999887788889999999999998866554433332221
Q ss_pred HhhhcccccCCCCCceEEeccCCCcc
Q psy17467 131 ASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 131 ~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
..+.|++++.||+|+.
T Consensus 148 ----------~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 148 ----------GERIRPVLTVNKMDRC 163 (843)
T ss_pred ----------HCCCCEEEEEECCccc
Confidence 2467888899999987
No 296
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.47 E-value=1e-06 Score=89.55 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=24.1
Q ss_pred cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 223 HDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 223 lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.++++++|||++|+|++++|+++.+.+
T Consensus 169 ~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 169 GEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998655
No 297
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=9.3e-07 Score=97.60 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=63.9
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcC--CCCCC---------------------------CCCcceeeEEEEEEEe
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG--VFPPG---------------------------QGATIGVDFMIKTVEI 51 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~---------------------------~~pTig~d~~~~~i~v 51 (730)
|...+.-++++++|...+|||||+-||+.. .++.. ....-|.+.......+
T Consensus 1 ~~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f 80 (428)
T COG5256 1 MASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF 80 (428)
T ss_pred CCCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe
Confidence 344556699999999999999999998742 11110 0011222333333344
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 52 NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 52 dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
.-..+.+.|+|+||+.+|-.-.-.-...||+.|||+|+.+.+
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence 444578999999999888765556677899999999998763
No 298
>PTZ00416 elongation factor 2; Provisional
Probab=98.43 E-value=8.9e-07 Score=107.33 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=64.3
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-----------CCC-----CcceeeEEEEEEEeC--------CeEEEE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-----------GQG-----ATIGVDFMIKTVEIN--------NERIKL 58 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-----------~~~-----pTig~d~~~~~i~vd--------g~~v~L 58 (730)
+.+..-+|+|+|..++|||||+++|+...-.. ++. ..+++......+.++ ++.+.+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i 94 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI 94 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence 34555699999999999999999998632111 000 011111111223333 225789
Q ss_pred EEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467 59 QIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDC 97 (730)
Q Consensus 59 qLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~ 97 (730)
.++||||+.+|..-....++.+|++|+|+|+++.-.-+.
T Consensus 95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t 133 (836)
T PTZ00416 95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT 133 (836)
T ss_pred EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH
Confidence 999999999887777788899999999999987654443
No 299
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.42 E-value=3.3e-06 Score=87.10 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=52.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
...|+++|.+|+|||||++.+.+..-........|. .++ .......+.++||||.. ..+. ...+.+|++++|
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEE
Confidence 356999999999999999999864211111111221 111 11234678999999864 2222 346789999999
Q ss_pred eecCCCCch
Q psy17467 87 YDISCQPTF 95 (730)
Q Consensus 87 yDvtd~eSf 95 (730)
+|.+.....
T Consensus 111 iDa~~~~~~ 119 (225)
T cd01882 111 IDASFGFEM 119 (225)
T ss_pred EecCcCCCH
Confidence 998865443
No 300
>KOG1144|consensus
Probab=98.37 E-value=1.7e-06 Score=100.26 Aligned_cols=183 Identities=18% Similarity=0.217 Sum_probs=108.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC------------Ce----EEEEEEEeCCCchhhhhhh
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN------------NE----RIKLQIWDTAGQERFRSIT 73 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd------------g~----~v~LqLwDTpG~e~~~sl~ 73 (730)
|||+|.-..|||-|+..+.+.........+++.......+... ++ ---+.++||||++.|..++
T Consensus 478 cCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlR 557 (1064)
T KOG1144|consen 478 CCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLR 557 (1064)
T ss_pred EEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhh
Confidence 8999999999999999998765443332333222211122111 11 0127789999999999999
Q ss_pred HhhhccccEEEEEeecCC---CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467 74 QSYYRSAHALILVYDISC---QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS 150 (730)
Q Consensus 74 ~~~~r~ADaIILVyDvtd---~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG 150 (730)
......||.+|+|.|+.. +++.+.+. .+ ...++|+||+.
T Consensus 558 srgsslC~~aIlvvdImhGlepqtiESi~----lL----------------------------------R~rktpFivAL 599 (1064)
T KOG1144|consen 558 SRGSSLCDLAILVVDIMHGLEPQTIESIN----LL----------------------------------RMRKTPFIVAL 599 (1064)
T ss_pred hccccccceEEEEeehhccCCcchhHHHH----HH----------------------------------HhcCCCeEEee
Confidence 999999999999999975 44444432 11 12578889999
Q ss_pred cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-c------
Q psy17467 151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-H------ 223 (730)
Q Consensus 151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-l------ 223 (730)
||+|..-+ |..++...+...+-.... .+ .|- ...|. ..-.-+|+.+ +
T Consensus 600 NKiDRLYg------------------wk~~p~~~i~~~lkkQ~k--~v--~~E--F~~R~--~~ii~efaEQgLN~~Lyy 653 (1064)
T KOG1144|consen 600 NKIDRLYG------------------WKSCPNAPIVEALKKQKK--DV--QNE--FKERL--NNIIVEFAEQGLNAELYY 653 (1064)
T ss_pred hhhhhhcc------------------cccCCCchHHHHHHHhhH--HH--HHH--HHHHH--HHHHHHHHHcccchhhee
Confidence 99997532 222222222222211000 00 000 00000 0001111111 0
Q ss_pred -------CCeEEEEecCCCCChHHHHHHHHHHHHHHHHHH
Q psy17467 224 -------DMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256 (730)
Q Consensus 224 -------g~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~ 256 (730)
-++++++||.+|+||.+|+-+|+.........+
T Consensus 654 kNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 654 KNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred ecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 146899999999999999999998876655553
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.37 E-value=2.5e-06 Score=86.58 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=39.8
Q ss_pred CCccccccccccccCC-CCChHHHHHHHHhc--CCeEEEEecCCCCChHHHHHHHHHH
Q psy17467 194 NNIHCMARNKIDREDR-EIPTEVGEDFAKRH--DMYYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 194 ~~~~ivVgNK~DL~~R-~Vs~ee~~~lak~l--g~~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
..+.+++.||+|+... ....++..+..+.. +++++++||++|.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567889999998532 22233444444444 3789999999999999999999764
No 302
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.33 E-value=2e-06 Score=102.91 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=65.3
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-----------CCCC-----cceeeEEEEEE--EeCCeEEEEEEEe
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-----------GQGA-----TIGVDFMIKTV--EINNERIKLQIWD 62 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-----------~~~p-----Tig~d~~~~~i--~vdg~~v~LqLwD 62 (730)
|.+.+..-+|+|+|..++|||||+.+++...-.. ++.+ .++.......+ .+++..+.+.|+|
T Consensus 14 ~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD 93 (731)
T PRK07560 14 MKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (731)
T ss_pred hhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence 3445555689999999999999999997521110 0000 01111111122 2355568899999
Q ss_pred CCCchhhhhhhHhhhccccEEEEEeecCCCCchh
Q psy17467 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFD 96 (730)
Q Consensus 63 TpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe 96 (730)
|||+.+|.......++.+|++|+|+|+.....-+
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~ 127 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ 127 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc
Confidence 9999988877788899999999999988764443
No 303
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.24 E-value=2.3e-05 Score=91.55 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=63.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCC-CCCCCC-CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-------hhh-
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGV-FPPGQG-ATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-------SIT- 73 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~-f~~~~~-pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-------sl~- 73 (730)
-++.++|+++|.+||||||++|.+++.. +..... +.++ ........+++ ..+.|+||||..+.. .+.
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence 3466899999999999999999999875 333322 2222 22222334455 679999999965421 111
Q ss_pred --Hhhhc--cccEEEEEeecCCCCchhhhHHHHHHHHHHh
Q psy17467 74 --QSYYR--SAHALILVYDISCQPTFDCLTDWLREIEEYA 109 (730)
Q Consensus 74 --~~~~r--~ADaIILVyDvtd~eSfe~L~~wleeI~~~~ 109 (730)
..++. .+|++|+|..++.......-..++..|....
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lF 231 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVL 231 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHh
Confidence 12333 4799999998864433222224555554444
No 304
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.20 E-value=9.5e-06 Score=88.76 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=23.2
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 224 DMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 224 g~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
..+++.+||++|.||+++++.+.+.+
T Consensus 234 ~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 234 QPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998765
No 305
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.18 E-value=1.8e-05 Score=80.81 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--------hhhH---
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQ--GATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--------SITQ--- 74 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~--~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--------sl~~--- 74 (730)
++|+++|..|+||||++|.+++....... ...++.........++| ..+.++||||-.+.. .+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987653322 12223344445557788 668999999942211 1111
Q ss_pred hhhccccEEEEEeecC
Q psy17467 75 SYYRSAHALILVYDIS 90 (730)
Q Consensus 75 ~~~r~ADaIILVyDvt 90 (730)
....+.|+||||+.++
T Consensus 79 ~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG 94 (212)
T ss_dssp HTTT-ESEEEEEEETT
T ss_pred hccCCCeEEEEEEecC
Confidence 2245689999999988
No 306
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.15 E-value=2.9e-05 Score=86.69 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=60.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC----CCC------------CCCCCc---ceeeEEE---EEEEe---CCeEEEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG----VFP------------PGQGAT---IGVDFMI---KTVEI---NNERIKLQIW 61 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~----~f~------------~~~~pT---ig~d~~~---~~i~v---dg~~v~LqLw 61 (730)
.+-|.|+|+.++|||||+|+|.+. ... +...+. .+.++.. +.+++ ++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 467999999999999999999987 322 111121 2223333 23333 4556788999
Q ss_pred eCCCchhhhhh-----------------------------hHhhhc-cccEEEEEe-ecC--C--CCchhhh-HHHHHHH
Q psy17467 62 DTAGQERFRSI-----------------------------TQSYYR-SAHALILVY-DIS--C--QPTFDCL-TDWLREI 105 (730)
Q Consensus 62 DTpG~e~~~sl-----------------------------~~~~~r-~ADaIILVy-Dvt--d--~eSfe~L-~~wleeI 105 (730)
||+|-..-..+ .+..+. .+|+.|+|. |.+ + ++.+... .+|++++
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99984321111 123355 789988888 653 2 3344443 3466666
Q ss_pred HH
Q psy17467 106 EE 107 (730)
Q Consensus 106 ~~ 107 (730)
+.
T Consensus 177 k~ 178 (492)
T TIGR02836 177 KE 178 (492)
T ss_pred Hh
Confidence 54
No 307
>KOG0082|consensus
Probab=98.13 E-value=5.4e-05 Score=83.11 Aligned_cols=146 Identities=17% Similarity=0.255 Sum_probs=89.3
Q ss_pred EEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCc--hhhh--HHHHHHHHHHhcccceEEEEeccCc
Q psy17467 48 TVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPT--FDCL--TDWLREIEEYASFKVLRVLVGGTSG 123 (730)
Q Consensus 48 ~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eS--fe~L--~~wleeI~~~~~~~~piVLVg~k~d 123 (730)
.+.+.+ ..+.++|++||...+.-|-.++.++++||||.++++-.. +++- .+..+.+
T Consensus 189 ~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~------------------ 248 (354)
T KOG0082|consen 189 EFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESL------------------ 248 (354)
T ss_pred EEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHH------------------
Confidence 334444 678999999999989999999999999999999986332 2221 1111111
Q ss_pred hhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccc
Q psy17467 124 LKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNK 203 (730)
Q Consensus 124 l~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK 203 (730)
.-...|.+...+ .+++++|..||.||.+.. +-......|+|.+.+.
T Consensus 249 -~LF~sI~n~~~F-----~~tsiiLFLNK~DLFeEK-----i~~~~~~~~Fpdy~G~----------------------- 294 (354)
T KOG0082|consen 249 -KLFESICNNKWF-----ANTSIILFLNKKDLFEEK-----IKKVPLTDCFPDYKGV----------------------- 294 (354)
T ss_pred -HHHHHHhcCccc-----ccCcEEEEeecHHHHHHH-----hccCchhhhCcCCCCC-----------------------
Confidence 001112222222 578999999999998643 1122234455554222
Q ss_pred ccccCCCCChHHHHHHHH--------h--cCCeEEEEecCCCCChHHHHHHHHHHHHHHHH
Q psy17467 204 IDREDREIPTEVGEDFAK--------R--HDMYYLETSAKASDNVEKLFMQIAAELMEKLA 254 (730)
Q Consensus 204 ~DL~~R~Vs~ee~~~lak--------~--lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~ 254 (730)
-..+++..+.+ . ..+-...+.|..-.+|+.+|..+.+.+....-
T Consensus 295 -------~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 295 -------NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred -------CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 11122222211 1 13446777888889999999999998866543
No 308
>KOG0410|consensus
Probab=98.12 E-value=7.8e-06 Score=87.97 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=56.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEe-CCeEEEEEEEeCCCchhh--hhhhH------hhhccc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI-NNERIKLQIWDTAGQERF--RSITQ------SYYRSA 80 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~~--~sl~~------~~~r~A 80 (730)
|++||-.|+|||||+++|+.....+...-..+.|........ +| -.+-+.||-|--.- ..+.. .-+..|
T Consensus 181 iavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg--~~vlltDTvGFisdLP~~LvaAF~ATLeeVaea 258 (410)
T KOG0410|consen 181 IAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG--NFVLLTDTVGFISDLPIQLVAAFQATLEEVAEA 258 (410)
T ss_pred EEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC--cEEEEeechhhhhhCcHHHHHHHHHHHHHHhhc
Confidence 899999999999999999976555444444444444444443 33 34678899883211 11111 225689
Q ss_pred cEEEEEeecCCCCchh
Q psy17467 81 HALILVYDISCQPTFD 96 (730)
Q Consensus 81 DaIILVyDvtd~eSfe 96 (730)
|.++-|.|++.|.--+
T Consensus 259 dlllHvvDiShP~ae~ 274 (410)
T KOG0410|consen 259 DLLLHVVDISHPNAEE 274 (410)
T ss_pred ceEEEEeecCCccHHH
Confidence 9999999999986443
No 309
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.12 E-value=1.1e-05 Score=77.79 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=35.3
Q ss_pred EEEEeCCCchh----hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHH
Q psy17467 58 LQIWDTAGQER----FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105 (730)
Q Consensus 58 LqLwDTpG~e~----~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI 105 (730)
+.|+||||... ...+...++..+|++|+|.+.+...+-.+...|.+..
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~ 154 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML 154 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh
Confidence 78999999743 3356778889999999999998865555544444444
No 310
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.07 E-value=2.5e-06 Score=89.17 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=18.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHH
Q psy17467 226 YYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 226 ~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.|+.+|+++++|+++++..+-+.+
T Consensus 213 ~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 213 RFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp --EE-BTTTTTTHHHHHHHHHHHH
T ss_pred eEEEEECCChHHHHHHHHHHHHHh
Confidence 699999999999999999887654
No 311
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.06 E-value=3e-05 Score=83.43 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.5
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 225 MYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 225 ~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.++++|||++|.|++++++++.+..
T Consensus 213 ~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 213 PPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 312
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.05 E-value=2.8e-05 Score=74.83 Aligned_cols=29 Identities=17% Similarity=0.011 Sum_probs=24.9
Q ss_pred HhcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 221 KRHDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 221 k~lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
...+.+++++||++|.|++++++.+.+.+
T Consensus 67 ~~~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 67 ESEGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred HhCCCcEEEEEccccccHHHHHHHHHHHH
Confidence 34567899999999999999999998766
No 313
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.04 E-value=2e-05 Score=78.40 Aligned_cols=24 Identities=29% Similarity=0.120 Sum_probs=22.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHH
Q psy17467 226 YYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 226 ~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.++++||++|.|++++++.+.+.+
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998776
No 314
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.01 E-value=9.5e-06 Score=77.26 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=39.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
+++++|.+|||||||+|++++...... ....|.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 799999999999999999998776432 23333344455555554 4799999995
No 315
>KOG0461|consensus
Probab=97.99 E-value=8.9e-05 Score=80.42 Aligned_cols=95 Identities=19% Similarity=0.308 Sum_probs=60.8
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcC----CCCCC---CCCcceeeEEEEEEEe-------CCeEEEEEEEeCCCc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG----VFPPG---QGATIGVDFMIKTVEI-------NNERIKLQIWDTAGQ 66 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~----~f~~~---~~pTig~d~~~~~i~v-------dg~~v~LqLwDTpG~ 66 (730)
|...-..+++-++|.-.+|||+|.+++..- -|... ....++.|.....+.+ .++..++.++|+||+
T Consensus 1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH 80 (522)
T KOG0461|consen 1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH 80 (522)
T ss_pred CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence 344445689999999999999999999642 22222 1122333333333332 366788899999998
Q ss_pred hhhhhhhHhhhcc---ccEEEEEeecCCCCchhhh
Q psy17467 67 ERFRSITQSYYRS---AHALILVYDISCQPTFDCL 98 (730)
Q Consensus 67 e~~~sl~~~~~r~---ADaIILVyDvtd~eSfe~L 98 (730)
.. +.+..+-. .|..++|+|++....-+.+
T Consensus 81 as---LIRtiiggaqiiDlm~lviDv~kG~QtQtA 112 (522)
T KOG0461|consen 81 AS---LIRTIIGGAQIIDLMILVIDVQKGKQTQTA 112 (522)
T ss_pred HH---HHHHHHhhhheeeeeeEEEehhcccccccc
Confidence 54 44444443 4888999999875444433
No 316
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.98 E-value=4.1e-05 Score=85.66 Aligned_cols=84 Identities=20% Similarity=0.339 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCCCC------------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG--VFPPG------------QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT 73 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~--~f~~~------------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~ 73 (730)
=+|+|+-.-.-|||||+..++.+ .|... ....-|++.-.+.-.++.+.+.++|+||||+.+|..-.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 37999999999999999999863 22211 11223334444443344444899999999999999988
Q ss_pred HhhhccccEEEEEeecCC
Q psy17467 74 QSYYRSAHALILVYDISC 91 (730)
Q Consensus 74 ~~~~r~ADaIILVyDvtd 91 (730)
+..+.-.|+++|+.|+.+
T Consensus 86 ERvl~MVDgvlLlVDA~E 103 (603)
T COG1217 86 ERVLSMVDGVLLLVDASE 103 (603)
T ss_pred hhhhhhcceEEEEEEccc
Confidence 899999999999999987
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.97 E-value=6.4e-05 Score=78.86 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVF 32 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f 32 (730)
-.|+++|+.|+||||+++.+.+..+
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCc
Confidence 4799999999999999999998653
No 318
>PRK12289 GTPase RsgA; Reviewed
Probab=97.96 E-value=2.8e-05 Score=85.76 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=64.3
Q ss_pred hhhHhhhccccEEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEe
Q psy17467 71 SITQSYYRSAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALA 149 (730)
Q Consensus 71 sl~~~~~r~ADaIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLV 149 (730)
.+.+..+.++|++++|+|++++. ++..+..|+..+.. .+.|++||
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----------------------------------~~ip~ILV 126 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----------------------------------TGLEIVLC 126 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------------------------------CCCCEEEE
Confidence 34456688999999999999875 44456667665421 46778888
Q ss_pred ccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEE
Q psy17467 150 SDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLE 229 (730)
Q Consensus 150 GNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvE 229 (730)
+||+||.+.+. .+...+....+|+.+++
T Consensus 127 lNK~DLv~~~~----------------------------------------------------~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 127 LNKADLVSPTE----------------------------------------------------QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred EEchhcCChHH----------------------------------------------------HHHHHHHHHhcCCeEEE
Confidence 88888853211 01112223467889999
Q ss_pred EecCCCCChHHHHHHHHH
Q psy17467 230 TSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 230 tSAktG~GVeeLFe~Li~ 247 (730)
+||++|.|++++++.+..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999998864
No 319
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.94 E-value=4.3e-05 Score=83.16 Aligned_cols=156 Identities=22% Similarity=0.239 Sum_probs=96.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCC------------CC----C---------------CCcceeeEEEEEEEeC
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFP------------PG----Q---------------GATIGVDFMIKTVEIN 52 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~------------~~----~---------------~pTig~d~~~~~i~vd 52 (730)
.+.++|++-+|.-.=|||||+-||+...-. .. . ....|++...-...+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 345799999999999999999999853110 00 0 0112222222222223
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHh
Q psy17467 53 NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMAS 132 (730)
Q Consensus 53 g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~ 132 (730)
-.+-++.+-||||++.|.+-.-.-...||+.|+++|+... .+++-+++. .|..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--------vl~QTrRHs-------------------~I~s 135 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--------VLEQTRRHS-------------------FIAS 135 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--------hHHHhHHHH-------------------HHHH
Confidence 3345688999999998876544455679999999998421 223333322 1222
Q ss_pred hhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCC
Q psy17467 133 AAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIP 212 (730)
Q Consensus 133 ~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs 212 (730)
-.|+ .-++++.||+||.+-.+. .+ .. -
T Consensus 136 LLGI-------rhvvvAVNKmDLvdy~e~--~F-------------------------------------------~~-I 162 (431)
T COG2895 136 LLGI-------RHVVVAVNKMDLVDYSEE--VF-------------------------------------------EA-I 162 (431)
T ss_pred HhCC-------cEEEEEEeeecccccCHH--HH-------------------------------------------HH-H
Confidence 2233 347888999999753211 00 00 1
Q ss_pred hHHHHHHHHhcCC---eEEEEecCCCCChH
Q psy17467 213 TEVGEDFAKRHDM---YYLETSAKASDNVE 239 (730)
Q Consensus 213 ~ee~~~lak~lg~---~fvEtSAktG~GVe 239 (730)
.++-..|+..+|+ .++++||..|.||-
T Consensus 163 ~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 163 VADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 2455678888876 59999999999984
No 320
>KOG3886|consensus
Probab=97.93 E-value=1.1e-05 Score=83.29 Aligned_cols=118 Identities=22% Similarity=0.352 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-----hhHhhhcccc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS-----ITQSYYRSAH 81 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-----l~~~~~r~AD 81 (730)
=||+++|..|+||||+=.-+..+.. .....++.++|.....+.+-|. ..+++||.+|++.+-. .....+++.+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4899999999999998655442221 1122244444565666666553 5699999999985422 2245688999
Q ss_pred EEEEEeecCCCCchhhhH---HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 82 ALILVYDISCQPTFDCLT---DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~---~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
++++|||+...+--.++. .-++.+. ..+|...+.....|.||...
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll--------------------------------~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALL--------------------------------QNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHH--------------------------------hcCCcceEEEEEeechhccc
Confidence 999999998765433443 2333332 34577777888899998753
No 321
>PRK00098 GTPase RsgA; Reviewed
Probab=97.92 E-value=3.1e-05 Score=83.41 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=61.9
Q ss_pred hhccccEEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 76 YYRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 76 ~~r~ADaIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
...++|++++|+|++++.++..+ ..|+..+.. .+.|+++|+||+|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----------------------------------~~ip~iIVlNK~D 122 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----------------------------------NGIKPIIVLNKID 122 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----------------------------------CCCCEEEEEEhHH
Confidence 35899999999999998776554 567666532 3567788888888
Q ss_pred cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC
Q psy17467 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA 234 (730)
Q Consensus 155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt 234 (730)
+.++.. ..++..+..+..|.+++++||++
T Consensus 123 L~~~~~---------------------------------------------------~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 123 LLDDLE---------------------------------------------------EARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred cCCCHH---------------------------------------------------HHHHHHHHHHHCCCeEEEEeCCC
Confidence 852110 01223344556788999999999
Q ss_pred CCChHHHHHHHH
Q psy17467 235 SDNVEKLFMQIA 246 (730)
Q Consensus 235 G~GVeeLFe~Li 246 (730)
|.|++++++.+.
T Consensus 152 g~gi~~L~~~l~ 163 (298)
T PRK00098 152 GEGLDELKPLLA 163 (298)
T ss_pred CccHHHHHhhcc
Confidence 999999998763
No 322
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.92 E-value=3.8e-05 Score=82.28 Aligned_cols=87 Identities=20% Similarity=0.186 Sum_probs=64.6
Q ss_pred hhhccccEEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 75 SYYRSAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 75 ~~~r~ADaIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
..+.++|++++|+|++++. ++..+.+|+..+.. .+.|+++|.||+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----------------------------------~~ip~iIVlNK~ 119 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----------------------------------AGIEPVIVLTKA 119 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----------------------------------cCCCEEEEEEHH
Confidence 3488999999999999988 88888888877643 346777888888
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK 233 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk 233 (730)
||.++.. ...........|.+++++||+
T Consensus 120 DL~~~~~----------------------------------------------------~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 120 DLLDDEE----------------------------------------------------EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred HCCChHH----------------------------------------------------HHHHHHHHHhCCCeEEEEECC
Confidence 8853210 011223344578899999999
Q ss_pred CCCChHHHHHHHHH
Q psy17467 234 ASDNVEKLFMQIAA 247 (730)
Q Consensus 234 tG~GVeeLFe~Li~ 247 (730)
+|.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999887753
No 323
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.91 E-value=2.5e-05 Score=75.52 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=38.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
.++|+++|.||||||||+|++.+....... ++.|.+.....+..++ .+.++||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 468999999999999999999986553322 3333333333444332 2679999983
No 324
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.91 E-value=3.1e-05 Score=85.74 Aligned_cols=84 Identities=17% Similarity=0.037 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhhh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFRS 71 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~s 71 (730)
+++.|+|.||||||||++.+++... ....+|..+.+.....+.+.+. ...+++.|+||...-.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999887 6666677767777777777553 24689999999654322
Q ss_pred -------hhHhhhccccEEEEEeecCC
Q psy17467 72 -------ITQSYYRSAHALILVYDISC 91 (730)
Q Consensus 72 -------l~~~~~r~ADaIILVyDvtd 91 (730)
-.-..++++|+++.|.|..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 22345889999999999854
No 325
>KOG0458|consensus
Probab=97.91 E-value=7.6e-05 Score=85.48 Aligned_cols=86 Identities=21% Similarity=0.238 Sum_probs=61.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcC--------------------CCCCC---------CCCcceeeEEEEEEEeCCeEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQG--------------------VFPPG---------QGATIGVDFMIKTVEINNERI 56 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~--------------------~f~~~---------~~pTig~d~~~~~i~vdg~~v 56 (730)
..+.++++|.-++|||||+-+++.. +..-. ....-|++...++..++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 4588999999999999999988641 11100 012233444455555666668
Q ss_pred EEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC
Q psy17467 57 KLQIWDTAGQERFRSITQSYYRSAHALILVYDISC 91 (730)
Q Consensus 57 ~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd 91 (730)
.+.|.|.||+.+|-.-.-.-...||+.|||.|++-
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 89999999998887655566778999999999864
No 326
>KOG0468|consensus
Probab=97.90 E-value=3.3e-05 Score=89.11 Aligned_cols=97 Identities=24% Similarity=0.295 Sum_probs=70.7
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC---------Cc------ceeeEE--EEEEE---eCCeEEEEEE
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQG---------AT------IGVDFM--IKTVE---INNERIKLQI 60 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~---------pT------ig~d~~--~~~i~---vdg~~v~LqL 60 (730)
|...+...+|.++|.-+.|||+|+..|.....+.... .+ -|.... ..++- .+++.+.+++
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 4566778899999999999999999998654332211 10 011111 11111 2577889999
Q ss_pred EeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDC 97 (730)
Q Consensus 61 wDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~ 97 (730)
.||||+-.|..-....++-+|++++|+|+.+.-.+..
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt 238 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT 238 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH
Confidence 9999999888877888999999999999998877754
No 327
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.87 E-value=2.8e-05 Score=77.40 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=39.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
.++|+++|.||||||||+|++++... .....|.+ +.....+.++. .+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~--T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGV--TKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCe--EcceEEEEeCC---CEEEEECcCC
Confidence 47999999999999999999998654 33333433 34444444443 4889999983
No 328
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.86 E-value=3.3e-05 Score=74.33 Aligned_cols=57 Identities=25% Similarity=0.261 Sum_probs=40.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
...+++++|.+|||||||+|++.+... ..+.++.|.+.....+..++ .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 357899999999999999999996553 33445666544333333333 5899999983
No 329
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.86 E-value=1.8e-05 Score=87.62 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=42.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcc---eeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhh-----h
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATI---GVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSY-----Y 77 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTi---g~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~-----~ 77 (730)
..++|+|+|.+|+|||||||.|.+-.-.......+ +.+.......... .-.+.+||+||...-.-....| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 45899999999999999999997632221111111 1111111111111 1138999999964332223333 5
Q ss_pred ccccEEEEEee
Q psy17467 78 RSAHALILVYD 88 (730)
Q Consensus 78 r~ADaIILVyD 88 (730)
...|.+|++.+
T Consensus 113 ~~yD~fiii~s 123 (376)
T PF05049_consen 113 YRYDFFIIISS 123 (376)
T ss_dssp GG-SEEEEEES
T ss_pred cccCEEEEEeC
Confidence 57899888877
No 330
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.85 E-value=3.1e-05 Score=76.07 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=41.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
..++++++|.+|||||||+|++++..+... .+..+.+.....+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 347899999999999999999998776422 2333334444555554 34789999994
No 331
>KOG1532|consensus
Probab=97.85 E-value=5.8e-05 Score=79.90 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=26.7
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHHHH
Q psy17467 224 DMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255 (730)
Q Consensus 224 g~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~ 255 (730)
++..+-|||.+|.|.+++|..+-..+.+....
T Consensus 238 ~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 238 SLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE 269 (366)
T ss_pred hCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998877665443
No 332
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00017 Score=77.82 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=97.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCCcceeeEE----------------EEEE----EeC----CeEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQG---VFPPGQGATIGVDFM----------------IKTV----EIN----NERIKL 58 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~---~f~~~~~pTig~d~~----------------~~~i----~vd----g~~v~L 58 (730)
..++|-++|.-.-|||||...+.+- .+.......+++... .... ..- .-...+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 5799999999999999999999862 111110000000000 0000 000 112458
Q ss_pred EEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccc
Q psy17467 59 QIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLC 138 (730)
Q Consensus 59 qLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~ 138 (730)
.|+|.||++-.-.---.-..-.|+.+||++.+.+.---.-++.+..+... |+
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--------------------------gi-- 140 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--------------------------GI-- 140 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--------------------------cc--
Confidence 89999999754332111122349999999998754333333333232211 11
Q ss_pred cCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH
Q psy17467 139 TVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED 218 (730)
Q Consensus 139 ~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~ 218 (730)
.-+++|-||.||.+.+..+ ...++..+
T Consensus 141 -----k~iiIvQNKIDlV~~E~Al------------------------------------------------E~y~qIk~ 167 (415)
T COG5257 141 -----KNIIIVQNKIDLVSRERAL------------------------------------------------ENYEQIKE 167 (415)
T ss_pred -----ceEEEEecccceecHHHHH------------------------------------------------HHHHHHHH
Confidence 2357778888887655432 23456666
Q ss_pred HHHh---cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 219 FAKR---HDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 219 lak~---lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
|.+- -+++++.+||..+.||+.+++.|.+.+
T Consensus 168 FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 168 FVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 6653 367999999999999999999998877
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=97.78 E-value=8.2e-05 Score=81.99 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=64.7
Q ss_pred hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
..++|.+++|++++...++..+..|+..+.. .++|+++|+||+||.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----------------------------------~~i~~VIVlNK~DL~ 163 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----------------------------------LGIEPLIVLNKIDLL 163 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----------------------------------cCCCEEEEEECccCC
Confidence 4679999999999989999999999765421 456778888999986
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD 236 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~ 236 (730)
+.... . ..++..+..+..|++++++||++|.
T Consensus 164 ~~~~~------------------------------------------------~-~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 164 DDEGR------------------------------------------------A-FVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred CcHHH------------------------------------------------H-HHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 42210 0 0112223345678899999999999
Q ss_pred ChHHHHHHHHH
Q psy17467 237 NVEKLFMQIAA 247 (730)
Q Consensus 237 GVeeLFe~Li~ 247 (730)
|++++++.+..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 334
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.0002 Score=79.88 Aligned_cols=109 Identities=14% Similarity=0.175 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--C--------------CCCCCCC----CcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ--G--------------VFPPGQG----ATIGVDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~--~--------------~f~~~~~----pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
..+|+-.|.+|||||..+++- + .+..+.+ -.-|+...+..++++-....++|.||||+++
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 468999999999999999762 1 1111111 1123344444555555558899999999999
Q ss_pred hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEecc
Q psy17467 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121 (730)
Q Consensus 69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k 121 (730)
|+.-....+.-+|.+|.|+|+...-.-+.++ +++-++ -.+.||+.+.||
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-LfeVcr---lR~iPI~TFiNK 142 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFEVCR---LRDIPIFTFINK 142 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccCccHHHHH-HHHHHh---hcCCceEEEeec
Confidence 9887777888999999999988754443332 333322 124566665555
No 335
>KOG1491|consensus
Probab=97.74 E-value=6e-05 Score=81.73 Aligned_cols=85 Identities=21% Similarity=0.187 Sum_probs=67.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC---------------CeEEEEEEEeCCCchhhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN---------------NERIKLQIWDTAGQERFRS 71 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd---------------g~~v~LqLwDTpG~e~~~s 71 (730)
.+++-|||.||||||||+|.+++........|..++++....+.+. .....|+++|++|.-+-.+
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 4799999999999999999999998888888999888877776653 2356799999998644332
Q ss_pred ----hhHh---hhccccEEEEEeecCC
Q psy17467 72 ----ITQS---YYRSAHALILVYDISC 91 (730)
Q Consensus 72 ----l~~~---~~r~ADaIILVyDvtd 91 (730)
+... -+|.+|+++-|.++.+
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecC
Confidence 3333 3788999999988765
No 336
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.73 E-value=0.00011 Score=81.36 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=67.4
Q ss_pred chhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc
Q psy17467 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA 145 (730)
Q Consensus 66 ~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P 145 (730)
.++|..+...+++.++++++|+|+.+.. ..|.+++.+.. .+.|
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--------------------------------~~~p 92 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--------------------------------GGNP 92 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--------------------------------CCCC
Confidence 4678888888999999999999987643 34556654432 2457
Q ss_pred eEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHH----HHHH
Q psy17467 146 TALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGE----DFAK 221 (730)
Q Consensus 146 VVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~----~lak 221 (730)
+++|+||+|+.+ +.+..++.. ++++
T Consensus 93 iilV~NK~DLl~---------------------------------------------------k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 93 VLLVGNKIDLLP---------------------------------------------------KSVNLSKIKEWMKKRAK 121 (360)
T ss_pred EEEEEEchhhCC---------------------------------------------------CCCCHHHHHHHHHHHHH
Confidence 788888888742 122223333 3466
Q ss_pred hcCC---eEEEEecCCCCChHHHHHHHHHH
Q psy17467 222 RHDM---YYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 222 ~lg~---~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
..|+ .++++||++|.|++++|+.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6776 48999999999999999988653
No 337
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.71 E-value=0.00024 Score=72.17 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=33.6
Q ss_pred cccccccccC-CCCChHHHHHHHHhc--CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 199 MARNKIDRED-REIPTEVGEDFAKRH--DMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 199 vVgNK~DL~~-R~Vs~ee~~~lak~l--g~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
+|.||.|+.. -..+-+...+-+++. +++|+++|+++|+|++++++++....
T Consensus 147 lVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 147 LVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 4556666642 122224444444443 57999999999999999998886543
No 338
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.71 E-value=8.6e-05 Score=79.44 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=41.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e 67 (730)
..++|+++|.||||||||+|++++... .....|.+ +.....+.+++ .+.++||||.-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~--T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGV--TKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCe--EEEEEEEEeCC---cEEEEECCCcC
Confidence 458999999999999999999998765 33333433 44444555543 47899999973
No 339
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.70 E-value=7.5e-05 Score=79.43 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=41.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
..++|+++|.||||||||+|++.+....... +..|.+.....+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 3588999999999999999999986643321 3334444455555543 4789999997
No 340
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00028 Score=83.95 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=76.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcC--CCCC----C----C--------CCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQG--VFPP----G----Q--------GATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~----~----~--------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
+..-+|.|+|.-.+|||||..+++-. .... . . ...+++.....++.+.+ .+.++++||||+
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 34568999999999999999998742 1110 0 0 11223233333444553 588999999999
Q ss_pred hhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEecc
Q psy17467 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121 (730)
Q Consensus 67 e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k 121 (730)
-+|..-....++-+|++|+|+|+...-..+.-.-|....+ .+.|.+++.||
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNK 137 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNK 137 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEEC
Confidence 9999988999999999999999988766665555554432 23444444444
No 341
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.59 E-value=9.9e-05 Score=73.49 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---------CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVF---------PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f---------~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
.+++++|.+|||||||+|.+.+... .....| |.+.....+.++. .+.|+||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIP--GTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCC--CeeeeeEEEecCC---CCEEEeCcCC
Confidence 5799999999999999999997542 222333 3344444555543 4799999983
No 342
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00034 Score=78.29 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=55.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCC---CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFP---PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~---~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
|.-.|.-.-|||||+..+++..-. ....-.++.|.........+ ..+.|+|+||++++-+-.-.-+...|..+||
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 566777888999999999875432 22222333333333333333 5799999999998766555556688999999
Q ss_pred eecCCCC
Q psy17467 87 YDISCQP 93 (730)
Q Consensus 87 yDvtd~e 93 (730)
+|.++.-
T Consensus 81 V~~deGl 87 (447)
T COG3276 81 VAADEGL 87 (447)
T ss_pred EeCccCc
Confidence 9997643
No 343
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.49 E-value=0.00035 Score=74.94 Aligned_cols=60 Identities=27% Similarity=0.480 Sum_probs=41.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC----------CCcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ----------GATIGVDFMIKTVEINNERIKLQIWDTAG 65 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~----------~pTig~d~~~~~i~vdg~~v~LqLwDTpG 65 (730)
..++|+|+|.+|+|||||+|.|++....... .++.........+.-++..+.+.++||||
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 4689999999999999999999986543321 12333334444555578889999999998
No 344
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.48 E-value=0.00018 Score=78.52 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=43.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e 67 (730)
..+++.|+|-||||||||||+|.+..... ..+..|.+.....+..+.. +.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 35789999999999999999999876532 2244465666666666553 8999999963
No 345
>KOG4273|consensus
Probab=97.47 E-value=0.00055 Score=71.65 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=60.8
Q ss_pred EEEEEcCCCC--CHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 9 KVVLVGNAGV--GKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 9 KIvVLG~pnV--GKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
-++|+|.+|| ||-+|+.|+....|.....+.-..++...++.-.-....+.+.=.+-.+++.-..........++++|
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmv 85 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMV 85 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEE
Confidence 3689999999 99999999999888766544444455555543222111222222221122111111222345799999
Q ss_pred eecCCCCchhhhHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLRE 104 (730)
Q Consensus 87 yDvtd~eSfe~L~~wlee 104 (730)
||++....+..++.|+..
T Consensus 86 fdlse~s~l~alqdwl~h 103 (418)
T KOG4273|consen 86 FDLSEKSGLDALQDWLPH 103 (418)
T ss_pred EeccchhhhHHHHhhccc
Confidence 999999999999999875
No 346
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.47 E-value=0.0013 Score=70.77 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=38.1
Q ss_pred CCccccccccccccCC-CCChHHHHHHHHhc--CCeEEEEecCCCCChHHHHHHHHHH
Q psy17467 194 NNIHCMARNKIDREDR-EIPTEVGEDFAKRH--DMYYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 194 ~~~~ivVgNK~DL~~R-~Vs~ee~~~lak~l--g~~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
...-++|.||+|+... ....+...+..+.. +++++++||++|+|++++.++|...
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4456789999998531 11223333333333 5789999999999999999998763
No 347
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.43 E-value=0.00033 Score=67.73 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=38.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
...+++++|.+|||||||+|.+++... .....+..+... ..+..+ ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCCC
Confidence 347899999999999999999998653 333334443333 233333 24899999983
No 348
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.34 E-value=0.0016 Score=68.95 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.6
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 225 MYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 225 ~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
-+++.|||.+|.||+++++.|.+..
T Consensus 205 ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 205 PPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999887644
No 349
>KOG2486|consensus
Probab=97.18 E-value=0.00089 Score=71.31 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=38.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GATIGVDFMIKTVEINNERIKLQIWDTAG 65 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-~pTig~d~~~~~i~vdg~~v~LqLwDTpG 65 (730)
+....++++|..|||||||+|.++........ .+..|.+.......++ -.+.++|.||
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG 192 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPG 192 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCC
Confidence 45578999999999999999999875543322 2233422222222223 3577899999
No 350
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.15 E-value=0.0012 Score=68.37 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=53.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC--CCCCCCC---CcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhh------hhH
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG--VFPPGQG---ATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRS------ITQ 74 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~~~---pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~s------l~~ 74 (730)
..-|+|+|++++|||+|+|++++. .|..... .|.|+ ......+. +....+.++||+|...... ...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi--~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGI--WMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccce--EEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 345899999999999999999998 7654322 23332 22222221 2346799999999753322 112
Q ss_pred hhhcc--ccEEEEEeecCCCC
Q psy17467 75 SYYRS--AHALILVYDISCQP 93 (730)
Q Consensus 75 ~~~r~--ADaIILVyDvtd~e 93 (730)
..+.. +|++|+..+.+...
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 22333 78888887765443
No 351
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.13 E-value=0.0019 Score=61.53 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=19.2
Q ss_pred HhhhccccEEEEEeecCCCCchh
Q psy17467 74 QSYYRSAHALILVYDISCQPTFD 96 (730)
Q Consensus 74 ~~~~r~ADaIILVyDvtd~eSfe 96 (730)
...+.++|++++|+|++++.+.+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~ 28 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFR 28 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccC
Confidence 35678999999999999887655
No 352
>KOG1954|consensus
Probab=97.09 E-value=0.0054 Score=67.58 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=92.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCcceeeEEEEEEEe------CCeE--------------------------
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPG-QGATIGVDFMIKTVEI------NNER-------------------------- 55 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pTig~d~~~~~i~v------dg~~-------------------------- 55 (730)
-|+++|.-..||||+++.++.++|+.. ..|..+.++....+.= .|..
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs 139 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS 139 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHh
Confidence 489999999999999999999988743 2233333444433311 1110
Q ss_pred -------EEEEEEeCCCch-----------hhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEE
Q psy17467 56 -------IKLQIWDTAGQE-----------RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVL 117 (730)
Q Consensus 56 -------v~LqLwDTpG~e-----------~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVL 117 (730)
-.+.|+||||.- +|......+...+|.|||+||.-...--+...+.+..+ .+..-.+-+
T Consensus 140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~EdkiRV 216 (532)
T KOG1954|consen 140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGHEDKIRV 216 (532)
T ss_pred cCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCCcceeEE
Confidence 148899999842 34445567788999999999976432222222233333 333344556
Q ss_pred EeccCchhhHHHHHhhhccc------ccCCCCCceEEeccCCCcchh
Q psy17467 118 VGGTSGLKIVNEMASAAGLL------CTVDPALATALASDKTDLDED 158 (730)
Q Consensus 118 Vg~k~dl~~~~~i~~~~g~~------~~~~~~~PVVLVGNK~DL~~~ 158 (730)
|.||.|.=..++++.-+|-. -...|..+-|.+|.=||..-.
T Consensus 217 VLNKADqVdtqqLmRVyGALmWslgkv~nTpev~rvYigSfw~hPl~ 263 (532)
T KOG1954|consen 217 VLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSRVYIGSFWDHPLQ 263 (532)
T ss_pred EeccccccCHHHHHHHHHHHHHhhhhhcCCCcceeEEeeccccCccc
Confidence 66887766666665555532 235677888888888886543
No 353
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.005 Score=66.17 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=60.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcC----------CCCC-CCC---CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQG----------VFPP-GQG---ATIGVDFMIKTVEINNERIKLQIWDTAGQERFR 70 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~----------~f~~-~~~---pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~ 70 (730)
+.-++|..+|.-+-|||||...++.. .|.. ... ..-|++.....+.++-....+-.+|+||+.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 45689999999999999999887641 1110 001 123444555566665444667889999998876
Q ss_pred hhhHhhhccccEEEEEeecCCC
Q psy17467 71 SITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 71 sl~~~~~r~ADaIILVyDvtd~ 92 (730)
.---.-..+.|+.|||.+++|.
T Consensus 90 KNMItgAaqmDgAILVVsA~dG 111 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDG 111 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCC
Confidence 5333344578999999999983
No 354
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.02 E-value=0.0034 Score=61.74 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 224 DMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 224 g~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
+..++.+||+++.|++++.+.+...+
T Consensus 75 ~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 45689999999999999999988765
No 355
>PRK12288 GTPase RsgA; Reviewed
Probab=97.00 E-value=0.0011 Score=73.05 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=35.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCC-CCCCc---ce--eeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPP-GQGAT---IG--VDFMIKTVEINNERIKLQIWDTAGQERFR 70 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~-~~~pT---ig--~d~~~~~i~vdg~~v~LqLwDTpG~e~~~ 70 (730)
++|+|.+|||||||+|+|++..... ...+. .| ++.....+.+.+. ..|+||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 7899999999999999999754321 11111 01 1222333444322 2489999987653
No 356
>KOG1143|consensus
Probab=96.98 E-value=0.0038 Score=68.73 Aligned_cols=181 Identities=18% Similarity=0.193 Sum_probs=100.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-----------------------CCcceeeEEEEEEEeC--------
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-----------------------GATIGVDFMIKTVEIN-------- 52 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-----------------------~pTig~d~~~~~i~vd-------- 52 (730)
+...++++++|...+|||||+--++.+...... ...+|.+..-+.+.|.
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 446789999999999999999877765433221 1122222222222221
Q ss_pred --CeEEEEEEEeCCCchhhhhhhHhhhc--cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHH
Q psy17467 53 --NERIKLQIWDTAGQERFRSITQSYYR--SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVN 128 (730)
Q Consensus 53 --g~~v~LqLwDTpG~e~~~sl~~~~~r--~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~ 128 (730)
...-.+.++|.+|+.+|....-.-+. ..|..++|.++........ ++.+-.+
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~----------------------- 299 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLI----------------------- 299 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHH-----------------------
Confidence 11235889999999887654332222 3578888888765433311 2222222
Q ss_pred HHHhhhcccccCCCCCceEEeccCCCcchhhHHH---HHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccccc
Q psy17467 129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVL---ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKID 205 (730)
Q Consensus 129 ~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~---~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~D 205 (730)
..-++|.+++.+|.|+.+..... ..+.. .....-......+|-||.|
T Consensus 300 -----------~AL~iPfFvlvtK~Dl~~~~~~~~tv~~l~n-------------------ll~~~Gc~kvp~~Vt~~dd 349 (591)
T KOG1143|consen 300 -----------AALNIPFFVLVTKMDLVDRQGLKKTVKDLSN-------------------LLAKAGCTKVPKRVTTKDD 349 (591)
T ss_pred -----------HHhCCCeEEEEEeeccccchhHHHHHHHHHH-------------------HHhhcCccccceEeechHH
Confidence 12468899999999998652211 10000 0001112223334445443
Q ss_pred ccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 206 REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 206 L~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
- | ..+++++...-.+++-+|+.+|+|++-+-..
T Consensus 350 A----v--~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 350 A----V--KAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred H----H--HHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 2 1 2234444444458999999999998866443
No 357
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.97 E-value=0.0013 Score=72.74 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVF------PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f------~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
.+|+++|.+|||||||+|++++... .....|.. +.....+.+++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgt--T~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGT--TLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCe--EeeEEEEEeCC---CCEEEECCCCCC
Confidence 4799999999999999999997432 22233433 33344555533 257999999753
No 358
>PRK13796 GTPase YqeH; Provisional
Probab=96.95 E-value=0.0011 Score=73.53 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=37.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC----CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVF----PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f----~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e 67 (730)
.++.++|.+|||||||+|+++.... ..+..+..|++.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999985321 1111122233344455555442 4799999974
No 359
>PRK12289 GTPase RsgA; Reviewed
Probab=96.94 E-value=0.0011 Score=73.30 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=35.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCC-CCCc---ce--eeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPG-QGAT---IG--VDFMIKTVEINNERIKLQIWDTAGQERF 69 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~-~~pT---ig--~d~~~~~i~vdg~~v~LqLwDTpG~e~~ 69 (730)
++|+|.+|||||||+|+|++.....+ ..+. -| ++.....+...+.. .|+||||...+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 79999999999999999997543221 1121 00 12233444443222 68999997543
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.94 E-value=0.0042 Score=60.03 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=24.2
Q ss_pred hcCCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467 222 RHDMYYLETSAKASDNVEKLFMQIAAELM 250 (730)
Q Consensus 222 ~lg~~fvEtSAktG~GVeeLFe~Li~~l~ 250 (730)
..+..++.+||++|.|++++.+.+.+...
T Consensus 57 ~~~~~ii~vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 57 SYPTIPFKISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred hCCceEEEEeccCCcChhhHHHHHHHHhH
Confidence 34567899999999999999999987654
No 361
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.88 E-value=0.0032 Score=79.52 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=67.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCC------CCcceeeEEEEEEEeCCeEEEEEEEeCCCch--------hhhhhhHh
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQ------GATIGVDFMIKTVEINNERIKLQIWDTAGQE--------RFRSITQS 75 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e--------~~~sl~~~ 75 (730)
.+|+|++|+||||++++- +-.|+... ...++.+..+. .-+.+ .-.++||+|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~-wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCD-WWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccc-eEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 489999999999999987 44554321 11122122111 11222 24589999832 12234444
Q ss_pred hh---------ccccEEEEEeecCCCCch--hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCC
Q psy17467 76 YY---------RSAHALILVYDISCQPTF--DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPAL 144 (730)
Q Consensus 76 ~~---------r~ADaIILVyDvtd~eSf--e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~ 144 (730)
++ +..|+||+|+|+.+.-+- +........++.. +.++....| ...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~r------------------l~el~~~lg------~~~ 244 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQR------------------LQELREQLG------ARF 244 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHH------------------HHHHHHHhC------CCC
Confidence 32 347999999999874322 2222222222221 122333333 478
Q ss_pred ceEEeccCCCcchh
Q psy17467 145 ATALASDKTDLDED 158 (730)
Q Consensus 145 PVVLVGNK~DL~~~ 158 (730)
||.|+.+|+|+...
T Consensus 245 PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 245 PVYLVLTKADLLAG 258 (1169)
T ss_pred CEEEEEecchhhcC
Confidence 99999999998753
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0075 Score=65.09 Aligned_cols=188 Identities=16% Similarity=0.132 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh----HhhhccccEE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT----QSYYRSAHAL 83 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~----~~~~r~ADaI 83 (730)
..|-|-|.||||||||+..|...-.. .|..+-+--+|.+....-.++. +..-..+|-=
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~------------------~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~ 113 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRE------------------RGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPG 113 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHH------------------CCcEEEEEEECCCCCCCCccccccHhhHHhhccCCC
Confidence 46889999999999999998743211 1223444455544221111111 1111122444
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHh-cccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~-~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+=++.++.+.--+..--.++...+ ..+.-+|+|-+-+=..+. +-|.+-.|.
T Consensus 114 vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse-------------------v~I~~~aDt------- 167 (323)
T COG1703 114 VFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE-------------------VDIANMADT------- 167 (323)
T ss_pred eEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch-------------------hHHhhhcce-------
Confidence 55666667777666544222222222 234444444322111100 001111111
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH---HHHHH------hcCCeEEEEecC
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG---EDFAK------RHDMYYLETSAK 233 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~---~~lak------~lg~~fvEtSAk 233 (730)
++.+.+|..+-..+...... -..--++|.||.|+........+. ..+.. .+.-+++.|||.
T Consensus 168 ------~~~v~~pg~GD~~Q~iK~Gi----mEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~ 237 (323)
T COG1703 168 ------FLVVMIPGAGDDLQGIKAGI----MEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSAL 237 (323)
T ss_pred ------EEEEecCCCCcHHHHHHhhh----hhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeec
Confidence 12334454443333333322 233457788999964321111111 11111 112369999999
Q ss_pred CCCChHHHHHHHHHHH
Q psy17467 234 ASDNVEKLFMQIAAEL 249 (730)
Q Consensus 234 tG~GVeeLFe~Li~~l 249 (730)
+|+||+++++.+.+-.
T Consensus 238 ~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 238 EGEGIDELWDAIEDHR 253 (323)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999987655
No 363
>KOG1547|consensus
Probab=96.84 E-value=0.032 Score=58.67 Aligned_cols=61 Identities=25% Similarity=0.461 Sum_probs=41.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCC---------CCCCcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP---------GQGATIGVDFMIKTVEINNERIKLQIWDTAG 65 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~---------~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG 65 (730)
-+.++|.|||.+|.|||||+|.+....... .+..|+++-.....+.-++...++.++||||
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPG 113 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG 113 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence 356899999999999999999987543221 1122333333333444467777888999998
No 364
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.82 E-value=0.0045 Score=59.83 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=19.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHH
Q psy17467 226 YYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 226 ~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
..+.+||+++.|++++.+.+....
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHH
Confidence 357899999999999998886543
No 365
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.79 E-value=0.0012 Score=65.45 Aligned_cols=58 Identities=24% Similarity=0.314 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC-C-----CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPG-Q-----GATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~-~-----~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~ 69 (730)
-++++|.+|||||||+|.+.+.....+ . ......+.....+..++. -.++||||-..+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 479999999999999999997632111 0 000001112334444322 368999997654
No 366
>PRK13796 GTPase YqeH; Provisional
Probab=96.77 E-value=0.0065 Score=67.50 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHhcCC---eEEEEecCCCCChHHHHHHHHHH
Q psy17467 218 DFAKRHDM---YYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 218 ~lak~lg~---~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
.+++..|+ .++++||++|.|++++++.+.+.
T Consensus 124 ~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 124 QEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34566676 58999999999999999998653
No 367
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.73 E-value=0.0023 Score=67.26 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC-CCCc-----ceeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPG-QGAT-----IGVDFMIKTVEINNERIKLQIWDTAGQERF 69 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~-~~pT-----ig~d~~~~~i~vdg~~v~LqLwDTpG~e~~ 69 (730)
.++++|.+|||||||+|++++.....+ ..+. ..++.....+..++ -.|+||||...+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence 579999999999999999997533211 1111 00122233344433 269999997654
No 368
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.71 E-value=0.0037 Score=68.88 Aligned_cols=62 Identities=21% Similarity=0.385 Sum_probs=46.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCC----------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG----------QGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~----------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
...+.|.++|..|.|||||+|.|++...... ..+++........+.-+|..+.|.++||||-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 4678999999999999999999997622211 2355555555556666788889999999983
No 369
>KOG2655|consensus
Probab=96.68 E-value=0.0037 Score=69.10 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=45.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCC---------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG---------QGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~---------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
...+.+.++|++|.|||||+|.|+...+... ...++........+.-+|..+.|.++||||-
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 3568999999999999999999886643321 2234455555555555788889999999984
No 370
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.65 E-value=0.029 Score=62.37 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=70.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc--------------ceeeEEEEEEEeCCeE---------------
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGAT--------------IGVDFMIKTVEINNER--------------- 55 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pT--------------ig~d~~~~~i~vdg~~--------------- 55 (730)
...+.|.+.|.-+.|||||+-.|+.+......-.+ .+.+.....+.+++..
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 34578999999999999999988877654432111 1112222333332211
Q ss_pred ------EEEEEEeCCCchhhhh--hhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhH
Q psy17467 56 ------IKLQIWDTAGQERFRS--ITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127 (730)
Q Consensus 56 ------v~LqLwDTpG~e~~~s--l~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~ 127 (730)
--+.++||.|++.|-+ ++-.+-...|-.+||..++|..+--. ++.
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEH-------------------------- 247 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEH-------------------------- 247 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHh--------------------------
Confidence 2356677777776643 22333445677777777766443211 000
Q ss_pred HHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 128 ~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
.| -+..-..|+++|.+|+|+.+++.
T Consensus 248 ------Lg--i~~a~~lPviVvvTK~D~~~ddr 272 (527)
T COG5258 248 ------LG--IALAMELPVIVVVTKIDMVPDDR 272 (527)
T ss_pred ------hh--hhhhhcCCEEEEEEecccCcHHH
Confidence 00 11225789999999999987754
No 371
>KOG1424|consensus
Probab=96.50 E-value=0.0028 Score=72.20 Aligned_cols=58 Identities=19% Similarity=0.191 Sum_probs=43.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e 67 (730)
..+.|-+||-|||||||+||.|.+.+..... .|.|-+....++.+.. .+.|.|+||.-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 3688999999999999999999998765432 5555555555665554 37899999963
No 372
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.49 E-value=0.02 Score=61.06 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=23.8
Q ss_pred cCCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467 223 HDMYYLETSAKASDNVEKLFMQIAAELM 250 (730)
Q Consensus 223 lg~~fvEtSAktG~GVeeLFe~Li~~l~ 250 (730)
.+..++.+||+++.|++++.+.+.+.+.
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4567899999999999999988877663
No 373
>KOG0448|consensus
Probab=96.34 E-value=0.032 Score=65.73 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=24.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPG 35 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~ 35 (730)
...||+|.|+.+.||||++|.++..+..+.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~ 137 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPS 137 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcc
Confidence 347999999999999999999987655443
No 374
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.29 E-value=0.032 Score=59.83 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=24.5
Q ss_pred hcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467 222 RHDMYYLETSAKASDNVEKLFMQIAAELME 251 (730)
Q Consensus 222 ~lg~~fvEtSAktG~GVeeLFe~Li~~l~e 251 (730)
..+..++.+||+++.|++++.+.+...+.+
T Consensus 78 ~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 78 EQGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 336678999999999999999888776643
No 375
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.24 E-value=0.008 Score=64.56 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=36.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC-CC-----cceeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GA-----TIGVDFMIKTVEINNERIKLQIWDTAGQERF 69 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~-~p-----Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~~ 69 (730)
.++++|.+|||||||+|.+++....... .+ ....+.....+...+. ..++||||..++
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 5899999999999999999975432211 11 1111222334444322 258999998654
No 376
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.21 E-value=0.038 Score=61.65 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=37.3
Q ss_pred EEEEEe-CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC
Q psy17467 46 IKTVEI-NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC 91 (730)
Q Consensus 46 ~~~i~v-dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd 91 (730)
...+.+ .+ ..+.++|++|+...+.-|..++.++++||+|.|+++
T Consensus 227 e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ 271 (389)
T PF00503_consen 227 EIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSE 271 (389)
T ss_dssp EEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGG
T ss_pred EEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccc
Confidence 334445 44 778999999999889999999999999999999875
No 377
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.20 E-value=0.0063 Score=65.84 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=46.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC------CCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGV------FPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~------f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
.+++|.+|||||||+|++..+. ........--++.....+.+++.. .|+||||-.++.
T Consensus 167 svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~------------- 230 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG------------- 230 (301)
T ss_pred EEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC-------------
Confidence 6899999999999999998631 111111111112345566663222 589999976543
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEY 108 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~ 108 (730)
+ ...+.+++...+.++...
T Consensus 231 -----l-~~~~~e~l~~~F~ef~~~ 249 (301)
T COG1162 231 -----L-AHLEPEDLVQAFPEFAEL 249 (301)
T ss_pred -----c-ccCCHHHHHHHhHHHHHH
Confidence 2 223456666666666554
No 378
>PRK00098 GTPase RsgA; Reviewed
Probab=96.19 E-value=0.0076 Score=65.05 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=34.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCc---ce--eeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GAT---IG--VDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~-~pT---ig--~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
.++++|.+|||||||+|.+++....... .+. -| .+.....+..++. ..++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 4899999999999999999875432211 110 00 1122233334332 36899999754
No 379
>KOG0463|consensus
Probab=96.03 E-value=0.009 Score=65.83 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=52.7
Q ss_pred cCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH
Q psy17467 139 TVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED 218 (730)
Q Consensus 139 ~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~ 218 (730)
+..-+.||++|.+|+|.+.-. ++ -.+--.......+.-+....++|-++.|.-.. +-.
T Consensus 269 ALaL~VPVfvVVTKIDMCPAN-------iL---------qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~------A~N 326 (641)
T KOG0463|consen 269 ALALHVPVFVVVTKIDMCPAN-------IL---------QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHA------AVN 326 (641)
T ss_pred hhhhcCcEEEEEEeeccCcHH-------HH---------HHHHHHHHHHhcCCCcccCcEEEecccceEEe------ecc
Confidence 445688999999999987421 10 01111223333444566677888898886422 223
Q ss_pred HHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 219 FAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 219 lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
+..+.-|++|.+|-.+|.|++-+..
T Consensus 327 F~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 327 FPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred CccccccceEEeccccCCChHHHHH
Confidence 3344558999999999999986643
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.92 E-value=0.015 Score=62.21 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl 28 (730)
--|+++|.+||||||.+..+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 357889999999999988775
No 381
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.85 E-value=0.023 Score=55.56 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999999865
No 382
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.042 Score=63.33 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=51.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+=|+|+|+||+|||||++.+...--..+. ..+ ....+ .+.|+...+.++.+|. +..++. ...+-||.++|.
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti-~~i---~GPiT-vvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLl 140 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTI-DEI---RGPIT-VVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLL 140 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhh-hcc---CCceE-EeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEE
Confidence 356889999999999999877642111111 111 11222 2456778899999983 233322 334568999999
Q ss_pred eecCCCCchh
Q psy17467 87 YDISCQPTFD 96 (730)
Q Consensus 87 yDvtd~eSfe 96 (730)
+|.+-.-..+
T Consensus 141 IdgnfGfEME 150 (1077)
T COG5192 141 IDGNFGFEME 150 (1077)
T ss_pred eccccCceeh
Confidence 9987644333
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.031 Score=55.68 Aligned_cols=56 Identities=32% Similarity=0.547 Sum_probs=40.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTA 64 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTp 64 (730)
..+||.|-|.|||||||++.++.+.-.... -.++ -+.+..+.-+|+.+-+.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvg-Gf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVG-GFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceee-eEEeeeeecCCeEeeeEEEEcc
Confidence 358999999999999999998864211111 1222 3556666778888889999987
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.69 E-value=0.058 Score=61.38 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl 28 (730)
--|+++|.+||||||++.++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999998885
No 385
>KOG2484|consensus
Probab=95.68 E-value=0.008 Score=66.86 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=43.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
...+++-|+|-|||||||+||+|......... ++.|++.....+..+. .|.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence 34689999999999999999999987664332 3444445555555554 4899999985
No 386
>KOG3887|consensus
Probab=95.41 E-value=0.063 Score=56.57 Aligned_cols=219 Identities=20% Similarity=0.289 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEE--EEEEeCCeEEEEEEEeCCCchhh-hh--hhHhhhccccE
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMI--KTVEINNERIKLQIWDTAGQERF-RS--ITQSYYRSAHA 82 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~--~~i~vdg~~v~LqLwDTpG~e~~-~s--l~~~~~r~ADa 82 (730)
=+|++.|...+||||+-.-....- .+. .|.-.+... ..-.+.+.-+.+++||.||+-.+ .. -....++.+-+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkM-sPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeecc-CCC--ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 359999999999999865443321 111 111111111 01112234577999999998543 22 22466889999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
.|+|+|..+. -.+.+..+...+.+. ...+|++-+-+..-|.|...++...
T Consensus 105 LifvIDaQdd-y~eala~L~~~v~ra-----------------------------ykvNp~in~EVfiHKvDGLsdd~ki 154 (347)
T KOG3887|consen 105 LIFVIDAQDD-YMEALARLHMTVERA-----------------------------YKVNPNINFEVFIHKVDGLSDDFKI 154 (347)
T ss_pred EEEEEechHH-HHHHHHHHHHHhhhe-----------------------------eecCCCceEEEEEEeccCCchhhhh
Confidence 9999997652 122223222222211 1134777777788899987655321
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH----hcCCeEEEEecCCCCCh
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK----RHDMYYLETSAKASDNV 238 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak----~lg~~fvEtSAktG~GV 238 (730)
-++-| +......+++. ...+.|+-+|-- ...|
T Consensus 155 --------------------------------------etqrd-----I~qr~~d~l~d~gle~v~vsf~LTSIy-DHSI 190 (347)
T KOG3887|consen 155 --------------------------------------ETQRD-----IHQRTNDELADAGLEKVQVSFYLTSIY-DHSI 190 (347)
T ss_pred --------------------------------------hhHHH-----HHHHhhHHHHhhhhccceEEEEEeeec-chHH
Confidence 11222 22222233332 233467777644 4678
Q ss_pred HHHHHHHHHHHHHHHHHHh----------hhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCc
Q psy17467 239 EKLFMQIAAELMEKLAEKL----------TIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNID 308 (730)
Q Consensus 239 eeLFe~Li~~l~e~~~~~~----------~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~ 308 (730)
-+.|..++..+.......+ .....-....+++||- ...+.|.-+..+.+..++....-+...++
T Consensus 191 fEAFSkvVQkLipqLptLEnlLnif~s~S~ieKafLFDv~SKIYi------aTDS~PVdmq~YElC~d~IDV~iDl~~iY 264 (347)
T KOG3887|consen 191 FEAFSKVVQKLIPQLPTLENLLNIFISNSKIEKAFLFDVLSKIYI------ATDSSPVDMQSYELCCDMIDVTIDLSSIY 264 (347)
T ss_pred HHHHHHHHHHHhhhchhHHHHHHHHhhccchhhhhhhhhhheeEE------ecCCCcchhHHHHHHHhhhheeeehHHhh
Confidence 8888888777644322111 1111112233455554 34566777777766666655444443333
Q ss_pred e
Q psy17467 309 I 309 (730)
Q Consensus 309 ~ 309 (730)
.
T Consensus 265 g 265 (347)
T KOG3887|consen 265 G 265 (347)
T ss_pred C
Confidence 3
No 387
>PRK01889 GTPase RsgA; Reviewed
Probab=95.39 E-value=0.044 Score=60.76 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.0
Q ss_pred hcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 222 RHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 222 ~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
..|.+++.+||++|.|++++...+-
T Consensus 169 ~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 169 APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCCcEEEEECCCCccHHHHHHHhh
Confidence 4577889999999999999888763
No 388
>KOG0467|consensus
Probab=95.34 E-value=0.044 Score=65.12 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=66.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCC------------CCCC--CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGV------------FPPG--QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR 70 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~------------f~~~--~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~ 70 (730)
+..=++++|-.-.-|||||...+.-.. |... ...+-|++..+..+..-.+.+.++++|+||+-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 344578999999999999999887421 1111 11233444444455554556899999999999999
Q ss_pred hhhHhhhccccEEEEEeecCCCCc
Q psy17467 71 SITQSYYRSAHALILVYDISCQPT 94 (730)
Q Consensus 71 sl~~~~~r~ADaIILVyDvtd~eS 94 (730)
+......+-+|++++.+|+...-.
T Consensus 87 sevssas~l~d~alvlvdvvegv~ 110 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVC 110 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccc
Confidence 998889999999999999877543
No 389
>KOG0464|consensus
Probab=95.11 E-value=0.02 Score=63.82 Aligned_cols=96 Identities=21% Similarity=0.338 Sum_probs=74.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--------CCCCCCC--------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ--------GVFPPGQ--------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI 72 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~--------~~f~~~~--------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl 72 (730)
+|-|+..-.+||||...|++. +...... ...-|++.++..+.++++.+.++++||||+-+|+--
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 567778889999999999763 1111111 123455667777888888899999999999999888
Q ss_pred hHhhhccccEEEEEeecCCCCchhhhHHHHHH
Q psy17467 73 TQSYYRSAHALILVYDISCQPTFDCLTDWLRE 104 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wlee 104 (730)
.+.+++--|+++.|||.+-...-+.+.-|.+.
T Consensus 119 verclrvldgavav~dasagve~qtltvwrqa 150 (753)
T KOG0464|consen 119 VERCLRVLDGAVAVFDASAGVEAQTLTVWRQA 150 (753)
T ss_pred HHHHHHHhcCeEEEEeccCCcccceeeeehhc
Confidence 89999999999999999987777777777554
No 390
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.09 E-value=0.2 Score=50.29 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=40.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEE--eCC-CchhhhhhhHhhhccccEEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW--DTA-GQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLw--DTp-G~e~~~sl~~~~~r~ADaIIL 85 (730)
.++++|++|+|||||++.+.+-.. |+.| .+.+++..+.+..- +.+ |+.+.-.+......+.+++++
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLI-----PNGD------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC-----CCCc------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 489999999999999999887532 3333 33344433222111 134 334444566677777776655
No 391
>PRK14974 cell division protein FtsY; Provisional
Probab=94.75 E-value=0.083 Score=58.33 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=27.1
Q ss_pred cccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 197 HCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 197 ~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
..++.+|.|...+. -.+..++...+.++.+++ +|++++++...
T Consensus 282 ~giIlTKlD~~~~~---G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 282 DGVILTKVDADAKG---GAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred CEEEEeeecCCCCc---cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 34455666654322 234455556788888887 79999877543
No 392
>PRK13695 putative NTPase; Provisional
Probab=94.70 E-value=0.34 Score=47.65 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.||+++|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998754
No 393
>KOG2485|consensus
Probab=94.50 E-value=0.055 Score=58.83 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=37.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCC------CCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGV------FPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~------f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
..+.+.|+|-||||||||+|.+.... ......|.++.... ..+.+.+.. .+.+.||||.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~-~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS-ERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh-hheEeccCC-ceEEecCCCc
Confidence 45789999999999999999876421 12233444442222 223343322 3789999995
No 394
>KOG3859|consensus
Probab=94.46 E-value=0.068 Score=57.30 Aligned_cols=62 Identities=27% Similarity=0.435 Sum_probs=46.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC----CCcceeeEEEEEEEeCCeEEEEEEEeCCC
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ----GATIGVDFMIKTVEINNERIKLQIWDTAG 65 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~----~pTig~d~~~~~i~vdg~~v~LqLwDTpG 65 (730)
.-+.++|+.||..|.|||||+..+.+..|.... .|++........+.-.+..+.+.++||.|
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 346799999999999999999999998886543 34454333333344456678889999997
No 395
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.32 E-value=0.55 Score=54.93 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+|+|+.||||||++..|..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 396
>KOG0466|consensus
Probab=94.31 E-value=0.19 Score=54.59 Aligned_cols=111 Identities=16% Similarity=0.151 Sum_probs=63.5
Q ss_pred HHHHHHHHh---cCCeEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhc-ccccCCCCCCCCCccc
Q psy17467 214 EVGEDFAKR---HDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYN-IKKACGDAKSKPSFLS 289 (730)
Q Consensus 214 ee~~~lak~---lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~-~~~~~~~~~s~P~~l~ 289 (730)
++.++|.+. -|++++.+||.-+.||+-+.+.|++.+....+. ......--.+|.+. .+|++....-+ -.+.
T Consensus 202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd----f~s~prlIVIRSFDVNkPG~ev~~lk-Ggva 276 (466)
T KOG0466|consen 202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD----FTSPPRLIVIRSFDVNKPGSEVDDLK-GGVA 276 (466)
T ss_pred HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc----cCCCCcEEEEEeeccCCCCchhhccc-Cccc
Confidence 455555553 367999999999999999999999877322111 11112222333332 22333322222 2233
Q ss_pred cchhhH---HHHHHhhcCCCCceeeeccccccchhhHHHhHhh
Q psy17467 290 DKSLES---CIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLY 329 (730)
Q Consensus 290 ~~~~~~---~~~~~~k~~p~~~~~~~~~~~~~~~~~~~~l~~~ 329 (730)
+++... ++-+...-+|.+-.++.+|-.+-+.=|-|..+++
T Consensus 277 ggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~ 319 (466)
T KOG0466|consen 277 GGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLF 319 (466)
T ss_pred cchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHH
Confidence 444333 3334467788888888887666666565655544
No 397
>KOG0460|consensus
Probab=94.19 E-value=0.19 Score=55.45 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=57.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcC-------CC---CC-CCC---CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQG-------VF---PP-GQG---ATIGVDFMIKTVEINNERIKLQIWDTAGQERFR 70 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~-------~f---~~-~~~---pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~ 70 (730)
+.-++|--+|.-.-|||||...++.- ++ .. +.. -.-|++...-.+.|.-....+-=.|+||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 45578889999999999999887641 11 11 011 122444555566665444455668999998775
Q ss_pred hhhHhhhccccEEEEEeecCCC
Q psy17467 71 SITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 71 sl~~~~~r~ADaIILVyDvtd~ 92 (730)
.---.-....|+.|||+..+|.
T Consensus 132 KNMItGaaqMDGaILVVaatDG 153 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDG 153 (449)
T ss_pred HHhhcCccccCceEEEEEcCCC
Confidence 4322233456999999999994
No 398
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.06 E-value=0.064 Score=53.39 Aligned_cols=52 Identities=29% Similarity=0.438 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDT 63 (730)
||++.|+||+|||||+.+++..-.. ...+..| +++..+.-++..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc-cCCccce--EEeecccCCCceEEEEEEEC
Confidence 6899999999999999998743211 1113333 45555555676777788887
No 399
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.96 E-value=0.046 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.|+|.|.+||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 400
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.82 E-value=0.99 Score=49.55 Aligned_cols=45 Identities=11% Similarity=0.063 Sum_probs=31.8
Q ss_pred CccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 195 NIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 195 ~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+..+|.||.|...+ .-.+..++...++++.+++ +|++++++-..
T Consensus 260 ~~~giIlTKlD~t~~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 260 GLTGIILTKLDGTAK---GGVVFAIADELGIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred CCCEEEEECCCCCCC---ccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence 355678899996533 2345566677799999998 78998877443
No 401
>KOG0447|consensus
Probab=93.75 E-value=0.4 Score=55.46 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=23.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.+++-+|+|||+..+||||.+..+...
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHh
Confidence 456779999999999999999887654
No 402
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=0.12 Score=65.08 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHhHHHHHHHHHhhhhccCCCCCcccCcHHHHHHHHHHHHHH
Q psy17467 453 EYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVL 497 (730)
Q Consensus 453 eyl~~~l~~~f~~~~~~~~~~~~~~~~~~rps~~l~~~~~~~~~~ 497 (730)
.=.++.|+..|--.++.++. ++.....+.|-+.+..+|+|.+--
T Consensus 541 ~~Y~~~L~~~~lp~l~~~~e-~~L~~~~~d~e~~y~aLk~YlML~ 584 (1188)
T COG3523 541 DTYRRLLEQVLLPRLVNRLE-NALNAAPADSEELYDALKAYLMLG 584 (1188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhcccchHHHHHHHHHHHHhc
Confidence 34456677777666655442 222347778889999999998753
No 403
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=93.65 E-value=0.21 Score=44.65 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=51.6
Q ss_pred EEEEc-CCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 10 VVLVG-NAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 10 IvVLG-~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
|++.| ..|+||||+...+...-.. ...+.. .+..+.. +.+.++|+|+.... .....+..+|.+|++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl-------~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVL-------LIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEE-------EEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56777 6799999987766432111 111222 1222221 56889999986432 23367788999999998
Q ss_pred cCCCCchhhhHHHHHH
Q psy17467 89 ISCQPTFDCLTDWLRE 104 (730)
Q Consensus 89 vtd~eSfe~L~~wlee 104 (730)
. +..++..+.++++.
T Consensus 71 ~-~~~s~~~~~~~~~~ 85 (104)
T cd02042 71 P-SPLDLDGLEKLLET 85 (104)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 6 45567777666653
No 404
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.33 E-value=0.065 Score=50.19 Aligned_cols=20 Identities=35% Similarity=0.803 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
|+++|.|||||||++.++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 405
>KOG0085|consensus
Probab=93.26 E-value=0.26 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHH
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRF 27 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrL 27 (730)
..+|++++|...+||||++.++
T Consensus 38 relkllllgtgesgkstfikqm 59 (359)
T KOG0085|consen 38 RELKLLLLGTGESGKSTFIKQM 59 (359)
T ss_pred hhheeeeecCCCcchhhHHHHH
Confidence 5689999999999999999865
No 406
>PF13173 AAA_14: AAA domain
Probab=93.25 E-value=0.16 Score=47.63 Aligned_cols=23 Identities=35% Similarity=0.798 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVF 32 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f 32 (730)
+++.|+.+||||||+.++.....
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999986543
No 407
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=93.15 E-value=0.65 Score=53.41 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=42.0
Q ss_pred hhhhHhhhccccEEEEEee-cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcc
Q psy17467 70 RSITQSYYRSAHALILVYD-ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGL 136 (730)
Q Consensus 70 ~sl~~~~~r~ADaIILVyD-vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~ 136 (730)
-.+.+..|++++.+|| | -|.--+.+.+.+++.-+++....+..+++|- --++++.++.+...+
T Consensus 149 VEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~IT--HKL~Ev~~iaDrvTV 212 (501)
T COG3845 149 VEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFIT--HKLKEVMAIADRVTV 212 (501)
T ss_pred HHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe--ccHHHHHHhhCeeEE
Confidence 3344566888887654 5 3444456788888888888888888888876 335555555555544
No 408
>PRK08118 topology modulation protein; Reviewed
Probab=93.14 E-value=0.071 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.798 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
||+|+|++|||||||..++...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 409
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.08 E-value=0.39 Score=43.46 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
--+++.|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998654
No 410
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.00 E-value=0.055 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
No 411
>KOG0465|consensus
Probab=92.94 E-value=0.26 Score=57.67 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=68.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC------C----------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPG------Q----------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI 72 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~------~----------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl 72 (730)
+|-+.-.-.+||||+-.|.+...-... . ...-|++..+......+..+.++++||||+-+|.--
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 345555667899999998763210000 0 011122223333333344689999999999998887
Q ss_pred hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEecc
Q psy17467 73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k 121 (730)
.+..++--|+.|+|+|......-+...-|.+.-+ -+.|.+...||
T Consensus 121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNK 165 (721)
T KOG0465|consen 121 VERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINK 165 (721)
T ss_pred ehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEeh
Confidence 7888999999999999876655555555655432 24566666555
No 412
>PRK07261 topology modulation protein; Provisional
Probab=92.88 E-value=0.081 Score=52.44 Aligned_cols=21 Identities=38% Similarity=0.836 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
||+|+|.+|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 413
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.074 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.730 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
||+|+|+||+||||+..++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.83 E-value=0.26 Score=56.14 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl 28 (730)
.-++++|.+||||||++..+.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 458999999999999976654
No 415
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.79 E-value=0.41 Score=46.00 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=39.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEE-EeCCC-chhhhhhhHhhhccccEEEE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI-WDTAG-QERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqL-wDTpG-~e~~~sl~~~~~r~ADaIIL 85 (730)
.++|+|++|+|||||++.+.+... |+.| .+.+++.. .+-+ ...++ +.+.-.+......+.+++|+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~-----~~~G------~i~~~~~~-~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELE-----PDEG------IVTWGSTV-KIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC-----CCce------EEEECCeE-EEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 378999999999999999987532 3333 33444421 1222 22443 33334456677777775554
No 416
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.48 E-value=0.1 Score=48.70 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 4899999999999999988764
No 417
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=92.47 E-value=0.37 Score=43.99 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=52.8
Q ss_pred EEEE-cCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 10 VVLV-GNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 10 IvVL-G~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
|+++ +..|+||||+...+...-.......+.-.|..... + ..+.++|+|+.... .....+..||.+|+|.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~----~--~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF----G--DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC----C--CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 3444 47899999987666422111101122211111110 1 15789999986432 33456788999999987
Q ss_pred cCCCCchhhhHHHHHHHHHHh
Q psy17467 89 ISCQPTFDCLTDWLREIEEYA 109 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~ 109 (730)
. +..++..+..+++.+.+..
T Consensus 74 ~-~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 74 Q-DLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred C-ChHHHHHHHHHHHHHHHcC
Confidence 5 4566777777777766543
No 418
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.46 E-value=0.12 Score=52.70 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.....-|+|+|++|||||||++++...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 344566899999999999999999754
No 419
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.38 E-value=0.12 Score=46.09 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFP 33 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~ 33 (730)
.++++|++|+|||+++..+...-..
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCC
Confidence 6899999999999999999865443
No 420
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.99 E-value=0.12 Score=52.14 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
|+|+|++|||||||+++++..
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999864
No 421
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.90 E-value=0.88 Score=38.65 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=46.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh-hHhhhccccEEEEEee
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI-TQSYYRSAHALILVYD 88 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl-~~~~~r~ADaIILVyD 88 (730)
+++.|.+|+|||++...+...-....+ +.+.++ .+.++|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999887643211111 112222 4789999986433221 1455668899999998
Q ss_pred cCCCCchhhhHH
Q psy17467 89 ISCQPTFDCLTD 100 (730)
Q Consensus 89 vtd~eSfe~L~~ 100 (730)
.+. .+......
T Consensus 68 ~~~-~~~~~~~~ 78 (99)
T cd01983 68 PEA-LAVLGARR 78 (99)
T ss_pred Cch-hhHHHHHH
Confidence 654 33444433
No 422
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=91.69 E-value=2.9 Score=46.10 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.+|-|.=|+|||||+++++.+.
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhcc
Confidence 3677899999999999998653
No 423
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.68 E-value=0.14 Score=46.77 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
|++.|+||+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999864
No 424
>KOG0099|consensus
Probab=91.66 E-value=1.5 Score=47.09 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=36.9
Q ss_pred EEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC
Q psy17467 46 IKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC 91 (730)
Q Consensus 46 ~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd 91 (730)
...+.++. +.++.+|++|+.+.+.-|-+.+.+..+||+|...++
T Consensus 194 et~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs 237 (379)
T KOG0099|consen 194 ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS 237 (379)
T ss_pred eEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence 33444444 779999999999999999999999999999998775
No 425
>PRK01889 GTPase RsgA; Reviewed
Probab=91.58 E-value=0.17 Score=56.26 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
+++++|.+|||||||+|.+++..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 68999999999999999998643
No 426
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.58 E-value=0.14 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~ 31 (730)
|+|||++|||||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998744
No 427
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.38 E-value=1 Score=50.54 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-++++|++||||||++.++..
T Consensus 139 ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 428
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.36 E-value=2.2 Score=41.06 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 429
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.18 E-value=0.16 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999998764
No 430
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.17 E-value=0.17 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998753
No 431
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.11 E-value=0.63 Score=44.95 Aligned_cols=22 Identities=50% Similarity=0.755 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3889999999999999999865
No 432
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.08 E-value=0.21 Score=42.16 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
.+|.|+.|+|||||+..+..
T Consensus 26 tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998764
No 433
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=90.97 E-value=0.37 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999999998754
No 434
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.97 E-value=0.18 Score=49.39 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-|+|+|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 3899999999999999999874
No 435
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.90 E-value=0.18 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.|+|+|++|+|||||++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 436
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.89 E-value=0.21 Score=42.19 Aligned_cols=21 Identities=19% Similarity=0.653 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998754
No 437
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.82 E-value=0.13 Score=52.37 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
=+++.|++|||||||+++++...
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 37999999999999999999765
No 438
>PRK06217 hypothetical protein; Validated
Probab=90.75 E-value=0.2 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.+|+|+|.+|+|||||..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.67 E-value=0.24 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++++-+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 38999999999999999987544
No 440
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=90.67 E-value=0.19 Score=53.66 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++|+|++|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999863
No 441
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.65 E-value=0.21 Score=47.84 Aligned_cols=21 Identities=43% Similarity=0.824 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
|+|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 442
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.51 E-value=0.21 Score=49.01 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-|+|+|.|||||||+++++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999974
No 443
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.49 E-value=2 Score=47.01 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
=.++++|++|.|||+++++|....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHC
Confidence 458999999999999999999754
No 444
>COG1162 Predicted GTPases [General function prediction only]
Probab=90.48 E-value=1 Score=49.18 Aligned_cols=35 Identities=23% Similarity=0.048 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467 214 EVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 214 ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
++.......+|...+.+|++++.|++++.+.+...
T Consensus 131 ~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 131 KELLREYEDIGYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred HHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCC
Confidence 34566677889999999999999999998877543
No 445
>KOG0780|consensus
Probab=90.39 E-value=0.47 Score=53.19 Aligned_cols=88 Identities=24% Similarity=0.348 Sum_probs=50.2
Q ss_pred EEEEcCCCCCHHHHHHHHHc----C----------CCCCCC-------CCcceeeEEEEEEEe-------------CCeE
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ----G----------VFPPGQ-------GATIGVDFMIKTVEI-------------NNER 55 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~----~----------~f~~~~-------~pTig~d~~~~~i~v-------------dg~~ 55 (730)
|.+||..|+||||.+.+|.. . .|...- ....++.++-...+. ..+.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~ 183 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKEN 183 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcC
Confidence 78999999999998877643 1 111100 011122222221111 1345
Q ss_pred EEEEEEeCCCchh-hhhhhHhh-----hccccEEEEEeecCCCCchhh
Q psy17467 56 IKLQIWDTAGQER-FRSITQSY-----YRSAHALILVYDISCQPTFDC 97 (730)
Q Consensus 56 v~LqLwDTpG~e~-~~sl~~~~-----~r~ADaIILVyDvtd~eSfe~ 97 (730)
+.+.|+||+|... ..++.... .-+.|-+|+|.|.+-.+.-+.
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 7899999999532 22333322 235799999999886555433
No 446
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=90.32 E-value=0.4 Score=54.04 Aligned_cols=84 Identities=18% Similarity=0.328 Sum_probs=59.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeec
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDI 89 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDv 89 (730)
|.++|.+|||||||+.-+++-. .|..| .+-+||+.+ |--..++|+.+....+.+.+.+==.+..
T Consensus 352 vFliG~NGsGKST~~~LLtGL~-----~PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGLY-----QPQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred EEEECCCCCcHHHHHHHHhccc-----CCCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 7899999999999999888653 24444 555676443 4455678988888887766554444445
Q ss_pred CCCCchhhhHHHHHHHHHHh
Q psy17467 90 SCQPTFDCLTDWLREIEEYA 109 (730)
Q Consensus 90 td~eSfe~L~~wleeI~~~~ 109 (730)
....|-+.+..|++.+.-.+
T Consensus 416 e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 416 EGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred ccCCChHHHHHHHHHHHHhh
Confidence 55577888899999876443
No 447
>KOG0066|consensus
Probab=90.30 E-value=1.6 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
..-+|+|||+.|||||||+.-+++.
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcC
Confidence 3458999999999999999988863
No 448
>PRK03839 putative kinase; Provisional
Probab=90.27 E-value=0.23 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
+|+|+|.||+||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 449
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.26 E-value=0.27 Score=48.31 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=23.9
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
|+....-.-|++.|.+|+||||+.+.+..
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 55555556799999999999999988764
No 450
>PRK14530 adenylate kinase; Provisional
Probab=90.25 E-value=0.24 Score=50.61 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
+|+|+|.|||||||+.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 451
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=90.15 E-value=0.22 Score=48.36 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=16.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-++|.|.+|+|||+|++++..
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998874
No 452
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=90.09 E-value=0.28 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~ 31 (730)
|+|+|++|||||||+|-+-+-.
T Consensus 34 vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 8999999999999999987644
No 453
>PF05729 NACHT: NACHT domain
Probab=90.02 E-value=0.24 Score=46.84 Aligned_cols=20 Identities=35% Similarity=0.728 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
++|.|++|+|||+++.++..
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 78999999999999999875
No 454
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.94 E-value=0.27 Score=46.14 Aligned_cols=21 Identities=48% Similarity=0.762 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+++|++|+|||+|+..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998864
No 455
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=89.84 E-value=0.78 Score=38.31 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=26.8
Q ss_pred ccEEEEEeecCCCCch--hhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 80 AHALILVYDISCQPTF--DCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 80 ADaIILVyDvtd~eSf--e~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
+++|++++|.+....+ ++=...+++++..- ++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--------------------------------~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--------------------------------PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--------------------------------TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--------------------------------CCCCEEEEEeccC
Confidence 6899999999976555 33344667776543 5789999999998
No 456
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=89.82 E-value=0.26 Score=45.26 Aligned_cols=21 Identities=38% Similarity=0.762 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++|.|++|+|||++++++...
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 457
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=89.79 E-value=0.25 Score=47.71 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.|+|+|..|+|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 458
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.75 E-value=0.6 Score=48.73 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999998654
No 459
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=89.68 E-value=0.28 Score=49.71 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4799999999999999999864
No 460
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=89.57 E-value=0.62 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++-+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999998754
No 461
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=89.55 E-value=1.2 Score=42.51 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=50.3
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC
Q psy17467 11 VLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS 90 (730)
Q Consensus 11 vVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt 90 (730)
+.-|.+|+|||++...+...-. .....+.-.+... ......+.+.++|+++.. .......+..+|.+++|.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 4557899999999766542110 0011111111110 000111668899999753 233456788999999999975
Q ss_pred CCCchhhhHHHHHHHHH
Q psy17467 91 CQPTFDCLTDWLREIEE 107 (730)
Q Consensus 91 d~eSfe~L~~wleeI~~ 107 (730)
..++..+...++.+.+
T Consensus 78 -~~s~~~~~~~l~~l~~ 93 (139)
T cd02038 78 -PTSITDAYALIKKLAK 93 (139)
T ss_pred -hhHHHHHHHHHHHHHH
Confidence 4555555555555543
No 462
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.54 E-value=0.57 Score=48.78 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 37899999999999999998753
No 463
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.52 E-value=0.64 Score=48.33 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47999999999999999998653
No 464
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=89.47 E-value=0.3 Score=48.98 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy17467 9 KVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl 28 (730)
.++++|++|+|||||++.++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999875
No 465
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.45 E-value=0.59 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+..
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999998654
No 466
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=89.37 E-value=0.31 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
No 467
>PRK14532 adenylate kinase; Provisional
Probab=89.37 E-value=0.29 Score=48.56 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
+|+++|+||+||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
No 468
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=89.33 E-value=0.61 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+..
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37999999999999999998754
No 469
>PRK00300 gmk guanylate kinase; Provisional
Probab=89.29 E-value=0.29 Score=49.11 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-|+|+|++|+|||||++.+.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 470
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=89.23 E-value=0.3 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988643
No 471
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.23 E-value=0.66 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
No 472
>PRK08233 hypothetical protein; Provisional
Probab=89.23 E-value=0.3 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
+-|+|.|.+|+|||||.+++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 45888999999999999999853
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.15 E-value=0.29 Score=49.01 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
|.|+|++|||||||.+.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998754
No 474
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=89.12 E-value=0.31 Score=49.20 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998653
No 475
>PRK13949 shikimate kinase; Provisional
Probab=89.11 E-value=0.32 Score=48.22 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
+|+|+|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 476
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=89.10 E-value=0.65 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 37999999999999999998753
No 477
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=89.10 E-value=0.34 Score=48.65 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 478
>KOG0469|consensus
Probab=89.07 E-value=0.94 Score=52.19 Aligned_cols=91 Identities=15% Similarity=0.268 Sum_probs=62.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcC------------CCCCCCC--CcceeeEEEEEEEe----------------CCe
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQG------------VFPPGQG--ATIGVDFMIKTVEI----------------NNE 54 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~------------~f~~~~~--pTig~d~~~~~i~v----------------dg~ 54 (730)
...=++.++..-.-|||||...|... .|..+.. ..-+++..+..+.. ++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 33346788888899999999988641 2222211 11222233322221 355
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCch
Q psy17467 55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTF 95 (730)
Q Consensus 55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSf 95 (730)
.+.++++|.||+-+|.+-....++-.|+.+.|.|.-+..-.
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV 137 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV 137 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe
Confidence 78899999999999999888999999999999997765433
No 479
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.07 E-value=0.39 Score=48.73 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.-|+|+|++|+|||||++.+.+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 55999999999999999999753
No 480
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.07 E-value=0.33 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999864
No 481
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=89.04 E-value=0.33 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 482
>PRK02496 adk adenylate kinase; Provisional
Probab=88.98 E-value=0.35 Score=47.90 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.||+|+|.||+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 483
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=88.97 E-value=0.3 Score=54.04 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~ 31 (730)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998754
No 484
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.96 E-value=0.32 Score=49.15 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 485
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.93 E-value=0.68 Score=48.50 Aligned_cols=23 Identities=17% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+..
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 38999999999999999998653
No 486
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=88.91 E-value=0.3 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
+|+|+|.||+||||+...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 487
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=88.87 E-value=0.35 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998864
No 488
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=88.85 E-value=0.36 Score=48.77 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 489
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.83 E-value=0.36 Score=49.21 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999864
No 490
>KOG2423|consensus
Probab=88.82 E-value=0.17 Score=56.60 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=48.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh--hhhHhhhccccEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR--SITQSYYRSAHAL 83 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~--sl~~~~~r~ADaI 83 (730)
..|-|-+||-|||||||+||.|-..+....- |-.|-+ +..+|=--.-.|-|+|+||.-.-. +.....+ .++
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGET---KVWQYItLmkrIfLIDcPGvVyps~dset~ivL---kGv 378 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGET---KVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL---KGV 378 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcc---hHHHHHHHHhceeEecCCCccCCCCCchHHHHh---hce
Confidence 4588999999999999999999876654322 323311 111110001247889999963221 1222223 256
Q ss_pred EEEeecCCCCc
Q psy17467 84 ILVYDISCQPT 94 (730)
Q Consensus 84 ILVyDvtd~eS 94 (730)
|=|=.+++++.
T Consensus 379 VRVenv~~pe~ 389 (572)
T KOG2423|consen 379 VRVENVKNPED 389 (572)
T ss_pred eeeeecCCHHH
Confidence 66777777653
No 491
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.78 E-value=0.36 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999753
No 492
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=88.76 E-value=0.37 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998743
No 493
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=88.74 E-value=0.36 Score=49.44 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 494
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.74 E-value=0.77 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++-+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47999999999999999998754
No 495
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=88.73 E-value=0.37 Score=48.78 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999998864
No 496
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=88.70 E-value=0.34 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
No 497
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=88.70 E-value=0.36 Score=49.06 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999887643
No 498
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.68 E-value=0.37 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 499
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=88.66 E-value=0.73 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3799999999999999999874
No 500
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=88.62 E-value=0.76 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+..
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999999753
Done!