Query psy17467
Match_columns 730
No_of_seqs 417 out of 2155
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:17:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_B NCK-associated protein 100.0 9.1E-74 3.1E-78 676.0 17.2 245 386-700 639-887 (1128)
2 4dkx_A RAS-related protein RAB 100.0 8.1E-33 2.8E-37 279.6 17.9 166 6-252 12-177 (216)
3 2hjg_A GTP-binding protein ENG 100.0 2.1E-31 7.3E-36 294.4 6.2 244 6-347 174-434 (436)
4 4dcu_A GTP-binding protein ENG 100.0 3.5E-30 1.2E-34 286.2 9.2 245 5-347 193-454 (456)
5 3tw8_B RAS-related protein RAB 100.0 3.3E-28 1.1E-32 230.3 20.4 173 2-256 4-176 (181)
6 2fu5_C RAS-related protein RAB 100.0 1.4E-28 4.8E-33 235.2 16.5 174 1-255 2-175 (183)
7 2bme_A RAB4A, RAS-related prot 100.0 9.5E-28 3.2E-32 229.6 21.2 172 2-254 5-176 (186)
8 3tkl_A RAS-related protein RAB 100.0 1.6E-27 5.4E-32 229.9 21.6 171 3-254 12-182 (196)
9 2a5j_A RAS-related protein RAB 100.0 1.2E-27 4E-32 232.0 20.5 171 3-254 17-187 (191)
10 2ew1_A RAS-related protein RAB 100.0 1.3E-27 4.4E-32 236.6 20.8 171 1-252 20-190 (201)
11 2bcg_Y Protein YP2, GTP-bindin 100.0 1.2E-27 4.1E-32 234.2 20.2 174 1-255 1-175 (206)
12 1zbd_A Rabphilin-3A; G protein 100.0 2.9E-27 9.9E-32 230.6 22.3 172 3-255 4-175 (203)
13 1z0f_A RAB14, member RAS oncog 100.0 2E-27 6.7E-32 224.6 20.2 167 3-250 11-177 (179)
14 1z08_A RAS-related protein RAB 100.0 1E-27 3.6E-32 225.2 18.2 166 4-250 3-168 (170)
15 2gf9_A RAS-related protein RAB 100.0 2.3E-27 8E-32 229.1 20.4 169 3-252 18-186 (189)
16 1r2q_A RAS-related protein RAB 100.0 2.7E-27 9.2E-32 221.4 19.5 165 4-249 3-167 (170)
17 2o52_A RAS-related protein RAB 100.0 1.9E-27 6.4E-32 233.3 19.2 173 2-255 20-192 (200)
18 1g16_A RAS-related protein SEC 100.0 1.5E-27 5.2E-32 223.6 17.6 164 6-251 2-165 (170)
19 2hup_A RAS-related protein RAB 100.0 3.1E-27 1E-31 232.3 20.4 168 3-251 25-193 (201)
20 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.9E-27 1.3E-31 223.1 20.4 173 1-251 1-174 (177)
21 3bc1_A RAS-related protein RAB 100.0 5.3E-27 1.8E-31 224.2 21.3 173 3-255 7-189 (195)
22 1z0j_A RAB-22, RAS-related pro 100.0 5E-27 1.7E-31 220.1 20.6 165 4-249 3-167 (170)
23 1z2a_A RAS-related protein RAB 100.0 2.5E-27 8.5E-32 221.7 18.4 164 5-250 3-166 (168)
24 2g6b_A RAS-related protein RAB 100.0 3.4E-27 1.2E-31 224.1 19.6 170 2-252 5-175 (180)
25 3q3j_B RHO-related GTP-binding 100.0 2.4E-27 8.2E-32 236.0 19.2 177 5-252 25-204 (214)
26 3t5g_A GTP-binding protein RHE 100.0 1.8E-27 6.1E-32 227.1 17.4 167 5-252 4-170 (181)
27 3kkq_A RAS-related protein M-R 100.0 5.2E-27 1.8E-31 224.3 20.7 167 4-251 15-182 (183)
28 3dz8_A RAS-related protein RAB 100.0 4.1E-28 1.4E-32 235.2 13.2 169 3-252 19-187 (191)
29 3q85_A GTP-binding protein REM 99.9 2.5E-27 8.6E-32 222.8 17.9 165 7-251 2-167 (169)
30 2nzj_A GTP-binding protein REM 99.9 2.9E-27 1E-31 223.1 18.2 167 5-252 2-170 (175)
31 3cbq_A GTP-binding protein REM 99.9 1.5E-27 5.3E-32 234.1 16.8 167 4-250 20-187 (195)
32 3reg_A RHO-like small GTPase; 99.9 3.8E-27 1.3E-31 228.5 19.1 168 2-250 18-187 (194)
33 2fn4_A P23, RAS-related protei 99.9 6.2E-27 2.1E-31 221.6 19.9 169 3-252 5-173 (181)
34 2efe_B Small GTP-binding prote 99.9 5.6E-27 1.9E-31 222.8 19.5 166 4-250 9-174 (181)
35 2oil_A CATX-8, RAS-related pro 99.9 1.1E-26 3.8E-31 224.7 21.3 170 3-253 21-190 (193)
36 2y8e_A RAB-protein 6, GH09086P 99.9 6.2E-27 2.1E-31 221.2 18.8 164 5-249 12-175 (179)
37 1ky3_A GTP-binding protein YPT 99.9 4.1E-27 1.4E-31 223.0 17.3 174 3-252 4-179 (182)
38 1m7b_A RND3/RHOE small GTP-bin 99.9 4.9E-27 1.7E-31 226.3 17.4 176 4-250 4-182 (184)
39 2q3h_A RAS homolog gene family 99.9 1.1E-26 3.9E-31 226.0 19.7 179 4-253 17-197 (201)
40 3c5c_A RAS-like protein 12; GD 99.9 5.8E-27 2E-31 227.5 17.1 166 5-250 19-185 (187)
41 1z06_A RAS-related protein RAB 99.9 1.2E-26 4E-31 224.2 19.0 167 4-250 17-187 (189)
42 1ek0_A Protein (GTP-binding pr 99.9 1.7E-26 5.8E-31 216.0 19.4 165 7-249 3-167 (170)
43 4djt_A GTP-binding nuclear pro 99.9 1.9E-27 6.4E-32 234.8 13.6 212 1-307 5-217 (218)
44 1c1y_A RAS-related protein RAP 99.9 1.9E-26 6.6E-31 215.4 19.7 162 7-249 3-165 (167)
45 2iwr_A Centaurin gamma 1; ANK 99.9 2.3E-26 7.9E-31 218.9 20.4 167 6-255 6-173 (178)
46 3cph_A RAS-related protein SEC 99.9 1.9E-26 6.4E-31 225.6 20.3 170 4-255 17-186 (213)
47 2a9k_A RAS-related protein RAL 99.9 2.4E-26 8.2E-31 218.7 20.4 170 4-254 15-184 (187)
48 4dsu_A GTPase KRAS, isoform 2B 99.9 4E-26 1.4E-30 217.9 22.0 169 6-256 3-171 (189)
49 2fg5_A RAB-22B, RAS-related pr 99.9 2E-26 6.8E-31 223.9 20.2 166 3-249 19-184 (192)
50 2atx_A Small GTP binding prote 99.9 1.3E-26 4.4E-31 224.4 18.7 175 5-250 16-192 (194)
51 2f7s_A C25KG, RAS-related prot 99.9 6.3E-27 2.2E-31 230.9 16.6 173 3-255 21-203 (217)
52 1u8z_A RAS-related protein RAL 99.9 1.9E-26 6.6E-31 214.7 19.0 163 7-250 4-166 (168)
53 2bov_A RAla, RAS-related prote 99.9 4E-26 1.4E-30 221.8 21.9 170 5-255 12-181 (206)
54 3q72_A GTP-binding protein RAD 99.9 8.8E-27 3E-31 218.4 16.7 164 7-252 2-165 (166)
55 1kao_A RAP2A; GTP-binding prot 99.9 1.3E-26 4.6E-31 215.6 17.6 163 7-250 3-165 (167)
56 2il1_A RAB12; G-protein, GDP, 99.9 1.9E-26 6.7E-31 224.3 19.5 168 3-251 22-190 (192)
57 3clv_A RAB5 protein, putative; 99.9 3.4E-26 1.1E-30 219.3 20.7 167 1-252 2-205 (208)
58 2g3y_A GTP-binding protein GEM 99.9 8.8E-27 3E-31 234.3 17.4 167 4-251 34-203 (211)
59 2hxs_A RAB-26, RAS-related pro 99.9 1.2E-26 4E-31 220.0 16.8 168 4-250 3-172 (178)
60 1gwn_A RHO-related GTP-binding 99.9 1.4E-26 4.8E-31 229.5 17.7 178 3-251 24-204 (205)
61 1vg8_A RAS-related protein RAB 99.9 5.1E-26 1.8E-30 221.6 20.6 175 3-255 4-179 (207)
62 2p5s_A RAS and EF-hand domain 99.9 1.8E-26 6.3E-31 225.3 17.4 172 4-250 25-196 (199)
63 1mh1_A RAC1; GTP-binding, GTPa 99.9 4.6E-26 1.6E-30 217.0 19.5 173 6-249 4-178 (186)
64 1x3s_A RAS-related protein RAB 99.9 4.5E-26 1.5E-30 219.1 19.6 165 5-250 13-177 (195)
65 3oes_A GTPase rhebl1; small GT 99.9 1E-26 3.5E-31 227.5 15.1 168 5-253 22-189 (201)
66 3cpj_B GTP-binding protein YPT 99.9 2.1E-26 7.2E-31 229.5 17.2 172 3-255 9-180 (223)
67 3t1o_A Gliding protein MGLA; G 99.9 3.2E-27 1.1E-31 226.7 10.8 168 2-254 9-195 (198)
68 3ihw_A Centg3; RAS, centaurin, 99.9 6.3E-26 2.2E-30 220.3 19.9 164 4-252 17-181 (184)
69 2cjw_A GTP-binding protein GEM 99.9 4.7E-26 1.6E-30 222.9 19.1 167 5-252 4-173 (192)
70 2j1l_A RHO-related GTP-binding 99.9 4.4E-26 1.5E-30 226.2 18.8 176 6-252 33-210 (214)
71 2atv_A RERG, RAS-like estrogen 99.9 7.9E-26 2.7E-30 220.0 20.2 166 5-252 26-192 (196)
72 2j0v_A RAC-like GTP-binding pr 99.9 1.2E-26 4E-31 228.1 14.4 173 5-252 7-181 (212)
73 2gco_A H9, RHO-related GTP-bin 99.9 9.5E-26 3.3E-30 221.0 19.7 175 5-250 23-199 (201)
74 1mky_A Probable GTP-binding pr 99.9 5.3E-27 1.8E-31 259.6 10.9 245 6-347 179-437 (439)
75 2yc2_C IFT27, small RAB-relate 99.9 2.8E-26 9.7E-31 222.7 13.8 175 5-256 18-197 (208)
76 2fv8_A H6, RHO-related GTP-bin 99.9 2.6E-25 8.8E-30 218.9 20.3 174 6-250 24-199 (207)
77 2erx_A GTP-binding protein DI- 99.9 2.6E-25 8.8E-30 208.3 19.2 163 7-249 3-165 (172)
78 2gf0_A GTP-binding protein DI- 99.9 2.8E-25 9.6E-30 214.6 19.3 168 1-249 2-169 (199)
79 4gzl_A RAS-related C3 botulinu 99.9 1.5E-25 5.1E-30 220.8 17.6 174 5-249 28-203 (204)
80 3bwd_D RAC-like GTP-binding pr 99.9 2.4E-26 8.3E-31 218.6 11.2 171 6-249 7-179 (182)
81 2ce2_X GTPase HRAS; signaling 99.9 8.6E-25 2.9E-29 202.7 19.4 162 7-250 3-164 (166)
82 3l0i_B RAS-related protein RAB 99.9 2.1E-27 7.2E-32 232.0 1.6 166 3-249 29-194 (199)
83 3con_A GTPase NRAS; structural 99.9 9.9E-25 3.4E-29 210.1 19.7 165 6-252 20-184 (190)
84 3gj0_A GTP-binding nuclear pro 99.9 9.9E-26 3.4E-30 223.7 11.9 164 3-250 11-174 (221)
85 1r8s_A ADP-ribosylation factor 99.9 1.7E-25 5.8E-30 209.3 9.6 161 8-250 1-161 (164)
86 4bas_A ADP-ribosylation factor 99.9 3.9E-24 1.3E-28 206.6 17.8 177 3-253 13-191 (199)
87 2f9l_A RAB11B, member RAS onco 99.9 1.2E-23 4E-28 205.8 20.9 169 4-253 2-170 (199)
88 1upt_A ARL1, ADP-ribosylation 99.9 1.8E-24 6E-29 203.3 14.4 164 5-250 5-168 (171)
89 2zej_A Dardarin, leucine-rich 99.9 7.4E-25 2.5E-29 211.8 10.2 165 7-250 2-177 (184)
90 1zd9_A ADP-ribosylation factor 99.9 1.1E-24 3.8E-29 210.9 11.3 165 5-250 20-184 (188)
91 1ksh_A ARF-like protein 2; sma 99.9 1E-23 3.5E-28 202.3 17.9 159 5-250 16-179 (186)
92 2h57_A ADP-ribosylation factor 99.9 5.7E-24 2E-28 205.5 16.0 162 5-250 19-186 (190)
93 2wkq_A NPH1-1, RAS-related C3 99.9 1.5E-23 5E-28 219.0 20.1 174 6-250 154-329 (332)
94 1zj6_A ADP-ribosylation factor 99.9 5.3E-24 1.8E-28 205.2 15.5 157 6-249 15-176 (187)
95 3llu_A RAS-related GTP-binding 99.9 7.2E-25 2.5E-29 213.9 9.1 168 3-249 16-195 (196)
96 1m2o_B GTP-binding protein SAR 99.9 7.8E-24 2.7E-28 206.3 16.1 155 6-247 22-188 (190)
97 1fzq_A ADP-ribosylation factor 99.9 5.4E-24 1.9E-28 205.5 14.2 160 5-251 14-178 (181)
98 3th5_A RAS-related C3 botulinu 99.8 5.8E-26 2E-30 222.3 0.0 174 5-249 28-203 (204)
99 1oix_A RAS-related protein RAB 99.9 6E-23 2.1E-27 200.4 20.7 166 3-249 25-190 (191)
100 2b6h_A ADP-ribosylation factor 99.9 1.4E-24 4.8E-29 211.8 8.1 162 6-249 28-189 (192)
101 2h17_A ADP-ribosylation factor 99.9 9.3E-24 3.2E-28 202.8 13.5 157 5-248 19-180 (181)
102 1f6b_A SAR1; gtpases, N-termin 99.9 1.4E-23 4.8E-28 206.1 14.3 156 6-248 24-196 (198)
103 1moz_A ARL1, ADP-ribosylation 99.9 1.3E-23 4.4E-28 200.4 13.4 161 5-252 16-181 (183)
104 2x77_A ADP-ribosylation factor 99.9 2.6E-24 8.8E-29 207.4 8.1 165 5-251 20-184 (189)
105 2fh5_B SR-beta, signal recogni 99.9 1.2E-23 4E-28 207.0 11.4 200 1-248 1-213 (214)
106 2wji_A Ferrous iron transport 99.9 6.7E-23 2.3E-27 194.7 14.3 153 7-249 3-163 (165)
107 3c5h_A Glucocorticoid receptor 99.9 2E-23 6.9E-28 214.5 6.7 164 4-249 16-253 (255)
108 2qu8_A Putative nucleolar GTP- 99.9 2.1E-21 7.1E-26 194.3 18.5 165 6-255 28-209 (228)
109 2wjg_A FEOB, ferrous iron tran 99.9 1.1E-21 3.8E-26 188.1 13.0 155 6-250 6-168 (188)
110 2lkc_A Translation initiation 99.9 1.5E-21 5E-26 184.9 13.2 167 2-251 3-171 (178)
111 3r7w_A Gtpase1, GTP-binding pr 99.9 1.8E-21 6.2E-26 205.7 14.8 166 7-249 3-179 (307)
112 3r7w_B Gtpase2, GTP-binding pr 99.9 2E-22 7E-27 216.2 7.0 168 9-255 1-178 (331)
113 3lvq_E ARF-GAP with SH3 domain 99.9 5.9E-22 2E-26 221.4 10.3 168 5-254 320-487 (497)
114 3o47_A ADP-ribosylation factor 99.9 3.6E-22 1.2E-26 213.3 8.0 163 6-250 164-326 (329)
115 2cxx_A Probable GTP-binding pr 99.8 3.3E-21 1.1E-25 184.4 11.9 164 8-252 2-185 (190)
116 1svi_A GTP-binding protein YSX 99.8 6.3E-21 2.2E-25 183.9 13.7 159 5-249 21-193 (195)
117 2gj8_A MNME, tRNA modification 99.8 6.4E-21 2.2E-25 183.1 12.9 152 7-249 4-164 (172)
118 2dyk_A GTP-binding protein; GT 99.8 2E-20 6.8E-25 173.9 13.8 150 8-249 2-160 (161)
119 3dpu_A RAB family protein; roc 99.8 9.2E-21 3.2E-25 214.4 10.1 161 5-250 39-207 (535)
120 3a1s_A Iron(II) transport prot 99.8 4.8E-20 1.6E-24 190.6 14.4 155 5-249 3-165 (258)
121 3pqc_A Probable GTP-binding pr 99.8 4.2E-20 1.5E-24 177.0 12.7 157 5-250 21-193 (195)
122 3b1v_A Ferrous iron uptake tra 99.8 3.7E-20 1.3E-24 193.4 11.2 153 6-249 2-162 (272)
123 3iby_A Ferrous iron transport 99.8 8.6E-20 3E-24 188.6 8.7 151 8-248 2-164 (256)
124 3k53_A Ferrous iron transport 99.8 5.8E-19 2E-23 182.5 12.9 154 7-249 3-164 (271)
125 4dhe_A Probable GTP-binding pr 99.8 9.3E-19 3.2E-23 172.8 13.5 164 5-251 27-211 (223)
126 1nrj_B SR-beta, signal recogni 99.8 1.2E-19 4.3E-24 178.8 6.1 154 4-237 9-170 (218)
127 3i8s_A Ferrous iron transport 99.8 2.1E-19 7.2E-24 187.0 7.8 153 7-249 3-167 (274)
128 3iev_A GTP-binding protein ERA 99.8 3.2E-18 1.1E-22 181.1 16.8 158 6-249 9-180 (308)
129 2e87_A Hypothetical protein PH 99.8 1.2E-17 4E-22 179.9 18.7 164 6-255 166-340 (357)
130 1mky_A Probable GTP-binding pr 99.8 5.9E-18 2E-22 187.2 15.7 151 9-250 3-165 (439)
131 3gee_A MNME, tRNA modification 99.7 9.2E-18 3.1E-22 188.4 15.0 155 7-249 233-396 (476)
132 1wf3_A GTP-binding protein; GT 99.7 3.1E-17 1.1E-21 173.5 15.1 161 1-249 1-171 (301)
133 1xzp_A Probable tRNA modificat 99.7 1E-17 3.5E-22 188.3 11.9 152 8-251 244-405 (482)
134 3ohm_A Guanine nucleotide-bind 99.7 1E-16 3.4E-21 172.1 15.7 147 37-251 152-318 (327)
135 1lnz_A SPO0B-associated GTP-bi 99.7 1.7E-17 5.8E-22 178.9 9.7 158 8-249 159-328 (342)
136 1cip_A Protein (guanine nucleo 99.7 1.8E-16 6.2E-21 171.6 16.1 139 46-251 185-344 (353)
137 2xtp_A GTPase IMAP family memb 99.7 1E-16 3.5E-21 163.6 13.0 84 6-91 21-117 (260)
138 3qq5_A Small GTP-binding prote 99.7 1.6E-17 5.4E-22 184.0 7.3 156 4-249 31-194 (423)
139 2hjg_A GTP-binding protein ENG 99.7 1.8E-17 6.2E-22 183.1 6.8 150 8-249 4-163 (436)
140 3lxx_A GTPase IMAP family memb 99.7 5.8E-16 2E-20 156.3 16.2 168 5-249 27-212 (239)
141 3geh_A MNME, tRNA modification 99.7 5E-17 1.7E-21 181.8 8.1 150 7-249 224-382 (462)
142 4a9a_A Ribosome-interacting GT 99.7 5.6E-16 1.9E-20 169.1 15.1 247 7-311 72-345 (376)
143 3sjy_A Translation initiation 99.7 2.9E-15 9.8E-20 164.0 20.7 159 4-249 5-190 (403)
144 2xtz_A Guanine nucleotide-bind 99.7 7.7E-16 2.6E-20 166.8 15.2 139 54-253 181-347 (354)
145 4fid_A G protein alpha subunit 99.7 9.8E-16 3.4E-20 165.2 15.8 145 38-251 147-328 (340)
146 2qag_A Septin-2, protein NEDD5 99.6 1.2E-16 4.2E-21 172.9 6.2 162 5-250 35-232 (361)
147 2ged_A SR-beta, signal recogni 99.6 1.3E-16 4.5E-21 153.6 5.4 118 5-158 46-171 (193)
148 1wb1_A Translation elongation 99.6 2E-15 6.8E-20 169.5 14.9 159 6-249 18-187 (482)
149 2qtf_A Protein HFLX, GTP-bindi 99.6 3.8E-15 1.3E-19 161.8 16.4 160 8-250 179-353 (364)
150 3cb4_D GTP-binding protein LEP 99.6 2.9E-15 9.9E-20 172.4 15.9 157 6-249 3-180 (599)
151 3t5d_A Septin-7; GTP-binding p 99.6 2.7E-15 9.2E-20 155.4 14.1 162 4-248 5-201 (274)
152 1s0u_A EIF-2-gamma, translatio 99.6 6.3E-15 2.2E-19 161.5 17.2 164 5-249 6-196 (408)
153 2ywe_A GTP-binding protein LEP 99.6 4.4E-15 1.5E-19 170.8 15.8 159 4-249 3-182 (600)
154 1pui_A ENGB, probable GTP-bind 99.6 3E-15 1E-19 146.3 11.5 155 7-249 26-197 (210)
155 1jny_A EF-1-alpha, elongation 99.6 4.8E-16 1.7E-20 171.9 6.4 162 6-243 5-205 (435)
156 4dcu_A GTP-binding protein ENG 99.6 6.7E-16 2.3E-20 171.6 7.3 114 7-156 23-144 (456)
157 3j2k_7 ERF3, eukaryotic polype 99.6 1.2E-14 4.1E-19 161.3 17.1 88 4-93 14-132 (439)
158 1ega_A Protein (GTP-binding pr 99.6 5.6E-15 1.9E-19 155.9 13.6 155 7-249 8-173 (301)
159 2aka_B Dynamin-1; fusion prote 99.6 9.2E-16 3.1E-20 158.7 7.5 119 5-157 24-206 (299)
160 1kk1_A EIF2gamma; initiation o 99.6 2.1E-14 7.1E-19 157.4 18.3 165 4-249 7-198 (410)
161 3p26_A Elongation factor 1 alp 99.6 4.3E-15 1.5E-19 166.4 12.4 91 5-97 31-152 (483)
162 3izy_P Translation initiation 99.6 1.4E-16 4.7E-21 181.2 0.0 158 7-249 4-166 (537)
163 3lxw_A GTPase IMAP family memb 99.6 9.4E-15 3.2E-19 149.6 13.6 169 5-250 19-207 (247)
164 2c78_A Elongation factor TU-A; 99.6 3.7E-15 1.3E-19 163.0 10.1 101 4-105 8-123 (405)
165 1d2e_A Elongation factor TU (E 99.6 6.3E-15 2.2E-19 161.1 10.0 93 6-98 2-108 (397)
166 1zun_B Sulfate adenylate trans 99.5 1.1E-14 3.8E-19 160.9 11.5 157 5-244 22-217 (434)
167 1jal_A YCHF protein; nucleotid 99.5 2.3E-14 7.8E-19 155.8 12.7 253 8-310 3-318 (363)
168 3tr5_A RF-3, peptide chain rel 99.5 1.2E-14 4E-19 165.2 10.6 115 6-157 12-148 (528)
169 2qnr_A Septin-2, protein NEDD5 99.5 8.5E-15 2.9E-19 154.7 7.6 162 5-249 16-212 (301)
170 1u0l_A Probable GTPase ENGC; p 99.5 5.4E-15 1.8E-19 156.0 5.8 133 22-246 32-168 (301)
171 2elf_A Protein translation elo 99.5 6.8E-14 2.3E-18 152.2 14.1 149 9-252 23-181 (370)
172 1f60_A Elongation factor EEF1A 99.5 6E-15 2E-19 164.5 5.9 90 1-92 1-121 (458)
173 1wxq_A GTP-binding protein; st 99.5 9E-15 3.1E-19 160.6 6.8 264 8-311 1-369 (397)
174 1zo1_I IF2, translation initia 99.5 1.5E-15 5.1E-20 171.4 0.3 87 6-94 3-89 (501)
175 1r5b_A Eukaryotic peptide chai 99.5 1.8E-14 6.2E-19 161.0 8.5 99 5-105 41-173 (467)
176 1zcb_A G alpha I/13; GTP-bindi 99.5 5.8E-14 2E-18 152.5 12.0 161 24-252 166-354 (362)
177 3izq_1 HBS1P, elongation facto 99.5 2.7E-14 9.1E-19 164.8 9.1 86 5-92 165-281 (611)
178 3avx_A Elongation factor TS, e 99.5 5.7E-14 1.9E-18 170.1 11.3 164 4-249 293-484 (1289)
179 2dby_A GTP-binding protein; GD 99.5 6.2E-14 2.1E-18 152.6 10.4 267 8-310 2-323 (368)
180 1azs_C GS-alpha; complex (lyas 99.5 1.7E-13 5.7E-18 150.9 12.7 163 38-254 203-388 (402)
181 3def_A T7I23.11 protein; chlor 99.4 4.7E-13 1.6E-17 137.6 13.7 119 6-156 35-164 (262)
182 1g7s_A Translation initiation 99.4 2.7E-13 9.3E-18 156.0 10.7 86 7-92 5-106 (594)
183 3t34_A Dynamin-related protein 99.4 2.3E-13 7.8E-18 146.4 9.2 159 7-248 34-258 (360)
184 2j69_A Bacterial dynamin-like 99.4 6.3E-13 2.1E-17 155.5 13.2 118 6-157 68-244 (695)
185 3mca_A HBS1, elongation factor 99.4 4.8E-14 1.6E-18 162.1 2.9 88 4-93 174-292 (592)
186 1udx_A The GTP-binding protein 99.4 9.5E-13 3.3E-17 145.5 12.7 159 9-250 159-324 (416)
187 1jwy_B Dynamin A GTPase domain 99.4 1.5E-12 5.2E-17 136.0 13.5 27 6-32 23-49 (315)
188 2qag_C Septin-7; cell cycle, c 99.4 2.7E-13 9.3E-18 149.9 7.1 161 5-248 29-224 (418)
189 2dy1_A Elongation factor G; tr 99.4 2E-12 6.9E-17 150.5 14.5 91 5-97 7-115 (665)
190 1h65_A Chloroplast outer envel 99.4 3.4E-12 1.2E-16 131.7 13.7 120 6-157 38-168 (270)
191 1dar_A EF-G, elongation factor 99.4 3.9E-12 1.3E-16 148.7 15.5 96 4-103 9-124 (691)
192 2hf9_A Probable hydrogenase ni 99.3 1.7E-13 5.7E-18 135.9 2.5 56 195-250 165-223 (226)
193 2h5e_A Peptide chain release f 99.3 3.5E-12 1.2E-16 144.9 13.1 87 6-94 12-120 (529)
194 3p8c_B NCK-associated protein 99.3 3.8E-13 1.3E-17 160.7 5.5 87 253-339 13-103 (1128)
195 2ohf_A Protein OLA1, GTP-bindi 99.3 1.8E-12 6.3E-17 142.3 8.0 260 6-310 21-344 (396)
196 2x2e_A Dynamin-1; nitration, h 99.3 2.1E-13 7.1E-18 146.6 0.5 28 6-33 30-57 (353)
197 2xex_A Elongation factor G; GT 99.3 2.2E-11 7.5E-16 142.4 15.8 96 5-102 8-121 (693)
198 2wsm_A Hydrogenase expression/ 99.3 4.6E-12 1.6E-16 125.0 8.5 41 212-252 173-215 (221)
199 2rdo_7 EF-G, elongation factor 99.3 5.6E-11 1.9E-15 139.2 18.3 98 4-101 7-127 (704)
200 1n0u_A EF-2, elongation factor 99.2 2.3E-11 7.8E-16 145.1 9.4 119 3-156 15-163 (842)
201 3p32_A Probable GTPase RV1496/ 99.2 4E-11 1.4E-15 129.1 9.5 28 224-251 257-284 (355)
202 2qpt_A EH domain-containing pr 99.1 5.7E-11 2E-15 135.5 9.2 119 5-160 63-235 (550)
203 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.6E-10 5.4E-15 126.9 10.8 250 7-310 20-346 (392)
204 2www_A Methylmalonic aciduria 99.0 1.9E-09 6.3E-14 116.2 13.2 27 224-250 252-278 (349)
205 2p67_A LAO/AO transport system 99.0 7.5E-10 2.6E-14 118.6 9.2 36 56-94 149-184 (341)
206 1yrb_A ATP(GTP)binding protein 99.0 2.6E-09 8.9E-14 108.1 11.9 25 225-249 231-255 (262)
207 2yv5_A YJEQ protein; hydrolase 98.9 1.8E-09 6E-14 114.1 9.2 97 66-246 66-164 (302)
208 3zvr_A Dynamin-1; hydrolase, D 98.8 2.1E-09 7.3E-14 126.6 7.2 27 6-32 50-76 (772)
209 3vqt_A RF-3, peptide chain rel 98.8 1.9E-08 6.3E-13 114.8 14.7 95 7-103 31-147 (548)
210 2qm8_A GTPase/ATPase; G protei 98.8 1.9E-09 6.4E-14 115.7 4.1 81 224-309 234-319 (337)
211 3j25_A Tetracycline resistance 98.6 1.3E-08 4.4E-13 118.1 4.1 95 8-102 3-113 (638)
212 4fn5_A EF-G 1, elongation fact 98.5 1.1E-06 3.8E-11 103.0 15.1 100 5-104 11-133 (709)
213 3l82_B F-box only protein 4; T 98.4 2.6E-07 8.8E-12 93.8 5.1 107 64-249 110-221 (227)
214 3l2o_B F-box only protein 4; s 98.2 1.2E-06 4.1E-11 92.7 6.3 109 63-250 194-307 (312)
215 3h2y_A GTPase family protein; 98.1 5.3E-06 1.8E-10 90.0 8.6 96 65-248 55-157 (368)
216 3ec1_A YQEH GTPase; atnos1, at 97.9 2.1E-05 7.2E-10 85.3 8.3 97 65-249 57-160 (369)
217 3ec1_A YQEH GTPase; atnos1, at 97.8 8.5E-06 2.9E-10 88.4 4.2 78 8-90 163-256 (369)
218 2j37_W Signal recognition part 97.8 1E-05 3.5E-10 91.5 4.3 22 7-28 101-122 (504)
219 3h2y_A GTPase family protein; 97.7 2E-05 6.9E-10 85.5 4.7 79 8-89 161-254 (368)
220 3cnl_A YLQF, putative uncharac 97.6 1.7E-05 5.7E-10 82.2 2.8 57 8-68 100-156 (262)
221 1puj_A YLQF, conserved hypothe 97.6 3.5E-05 1.2E-09 80.6 5.1 57 6-67 119-176 (282)
222 1puj_A YLQF, conserved hypothe 97.6 0.00027 9.1E-09 73.9 11.4 101 60-251 3-106 (282)
223 2qag_B Septin-6, protein NEDD5 97.5 0.0005 1.7E-08 76.2 11.8 57 8-66 43-105 (427)
224 1tq4_A IIGP1, interferon-induc 97.4 0.00051 1.7E-08 75.9 10.2 23 8-30 70-92 (413)
225 3sop_A Neuronal-specific septi 97.4 0.00044 1.5E-08 71.8 9.1 24 7-30 2-25 (270)
226 1f5n_A Interferon-induced guan 97.2 0.00019 6.4E-09 82.7 5.1 61 6-68 37-103 (592)
227 3dm5_A SRP54, signal recogniti 96.8 0.0011 3.7E-08 73.9 5.7 21 8-28 101-121 (443)
228 2v3c_C SRP54, signal recogniti 96.7 0.0011 3.8E-08 73.5 5.5 22 8-29 100-121 (432)
229 1bif_A 6-phosphofructo-2-kinas 96.7 8.9E-05 3E-09 82.5 -3.4 100 7-108 39-148 (469)
230 3cnl_A YLQF, putative uncharac 96.5 0.0049 1.7E-07 63.6 7.7 26 72-97 14-39 (262)
231 3kl4_A SRP54, signal recogniti 96.0 0.0025 8.5E-08 70.8 2.5 21 8-28 98-118 (433)
232 1j8m_F SRP54, signal recogniti 95.6 0.015 5.2E-07 61.1 6.7 21 8-28 99-119 (297)
233 3szr_A Interferon-induced GTP- 95.4 0.037 1.3E-06 63.7 9.6 24 9-32 47-70 (608)
234 3q5d_A Atlastin-1; G protein, 95.0 0.017 5.7E-07 64.5 5.0 23 7-29 67-89 (447)
235 1t9h_A YLOQ, probable GTPase E 94.8 0.014 4.8E-07 61.9 3.4 26 71-96 78-103 (307)
236 2rcn_A Probable GTPase ENGC; Y 94.5 0.1 3.6E-06 56.4 9.4 24 221-244 189-212 (358)
237 1ye8_A Protein THEP1, hypothet 93.6 0.034 1.2E-06 53.9 3.2 22 9-30 2-23 (178)
238 1kgd_A CASK, peripheral plasma 93.4 0.036 1.2E-06 53.0 2.9 22 9-30 7-28 (180)
239 1lvg_A Guanylate kinase, GMP k 93.2 0.042 1.4E-06 53.7 2.9 21 9-29 6-26 (198)
240 3tr0_A Guanylate kinase, GMP k 92.9 0.05 1.7E-06 52.2 3.0 22 9-30 9-30 (205)
241 1zp6_A Hypothetical protein AT 92.8 0.065 2.2E-06 50.9 3.6 23 8-30 10-32 (191)
242 3a00_A Guanylate kinase, GMP k 92.6 0.055 1.9E-06 51.9 2.8 21 10-30 4-24 (186)
243 1t9h_A YLOQ, probable GTPase E 92.3 0.034 1.2E-06 58.9 1.1 23 9-31 175-197 (307)
244 1znw_A Guanylate kinase, GMP k 92.3 0.062 2.1E-06 52.5 2.9 22 10-31 23-44 (207)
245 4gp7_A Metallophosphoesterase; 92.3 0.058 2E-06 51.3 2.6 19 10-28 12-30 (171)
246 1s96_A Guanylate kinase, GMP k 92.0 0.073 2.5E-06 53.3 3.0 23 9-31 18-40 (219)
247 1z6g_A Guanylate kinase; struc 91.9 0.072 2.5E-06 52.8 2.9 21 10-30 26-46 (218)
248 3tau_A Guanylate kinase, GMP k 91.8 0.08 2.8E-06 51.9 3.0 22 9-30 10-31 (208)
249 3ney_A 55 kDa erythrocyte memb 91.8 0.08 2.7E-06 52.6 2.9 22 9-30 21-42 (197)
250 1kag_A SKI, shikimate kinase I 91.7 0.097 3.3E-06 48.8 3.3 22 9-30 6-27 (173)
251 3c8u_A Fructokinase; YP_612366 91.5 0.089 3E-06 51.4 2.9 24 7-30 22-45 (208)
252 3lw7_A Adenylate kinase relate 91.5 0.097 3.3E-06 48.0 3.0 19 9-27 3-21 (179)
253 2j41_A Guanylate kinase; GMP, 91.4 0.095 3.2E-06 50.2 2.9 23 9-31 8-30 (207)
254 3kb2_A SPBC2 prophage-derived 91.2 0.1 3.5E-06 48.3 2.8 21 9-29 3-23 (173)
255 1ex7_A Guanylate kinase; subst 91.1 0.11 3.7E-06 51.2 3.1 21 10-30 4-24 (186)
256 2qor_A Guanylate kinase; phosp 91.1 0.11 3.8E-06 50.4 3.2 22 9-30 14-35 (204)
257 2rcn_A Probable GTPase ENGC; Y 91.1 0.1 3.5E-06 56.5 3.2 24 9-32 217-240 (358)
258 3asz_A Uridine kinase; cytidin 90.9 0.13 4.4E-06 49.8 3.4 22 8-29 7-28 (211)
259 1ly1_A Polynucleotide kinase; 90.9 0.12 4.1E-06 48.2 3.1 22 8-29 3-24 (181)
260 2bdt_A BH3686; alpha-beta prot 90.9 0.11 3.8E-06 49.5 2.9 21 9-29 4-24 (189)
261 2bbw_A Adenylate kinase 4, AK4 90.7 0.13 4.5E-06 51.4 3.4 21 8-28 28-48 (246)
262 3tif_A Uncharacterized ABC tra 90.6 0.12 4E-06 52.3 2.8 21 10-30 34-54 (235)
263 4eun_A Thermoresistant glucoki 90.5 0.13 4.4E-06 49.9 3.0 21 9-29 31-51 (200)
264 2pcj_A ABC transporter, lipopr 90.4 0.12 4.2E-06 51.7 2.9 21 10-30 33-53 (224)
265 1htw_A HI0065; nucleotide-bind 90.4 0.13 4.5E-06 48.9 2.9 23 9-31 35-57 (158)
266 1u0l_A Probable GTPase ENGC; p 90.3 0.14 4.9E-06 53.4 3.4 23 9-31 171-193 (301)
267 2ehv_A Hypothetical protein PH 90.2 0.14 4.9E-06 50.3 3.1 20 10-29 33-52 (251)
268 1nks_A Adenylate kinase; therm 90.2 0.16 5.4E-06 47.8 3.2 21 9-29 3-23 (194)
269 3fb4_A Adenylate kinase; psych 90.2 0.15 5.1E-06 49.6 3.1 21 9-29 2-22 (216)
270 2onk_A Molybdate/tungstate ABC 90.1 0.15 5.1E-06 51.9 3.2 22 9-30 26-47 (240)
271 4a74_A DNA repair and recombin 90.1 0.14 4.7E-06 49.7 2.9 21 10-30 28-48 (231)
272 3dl0_A Adenylate kinase; phosp 90.0 0.16 5.4E-06 49.5 3.1 21 9-29 2-22 (216)
273 2if2_A Dephospho-COA kinase; a 89.9 0.16 5.5E-06 48.9 3.1 22 8-29 2-23 (204)
274 2i3b_A HCR-ntpase, human cance 89.9 0.14 4.7E-06 50.2 2.6 21 9-29 3-23 (189)
275 2jaq_A Deoxyguanosine kinase; 89.9 0.17 5.8E-06 48.1 3.2 21 9-29 2-22 (205)
276 3t61_A Gluconokinase; PSI-biol 89.8 0.16 5.4E-06 49.0 2.9 21 9-29 20-40 (202)
277 1b0u_A Histidine permease; ABC 89.8 0.15 5E-06 52.5 2.8 34 10-54 35-68 (262)
278 1knq_A Gluconate kinase; ALFA/ 89.8 0.16 5.6E-06 47.6 2.9 22 8-29 9-30 (175)
279 2cbz_A Multidrug resistance-as 89.7 0.15 5.2E-06 51.5 2.8 22 9-30 33-54 (237)
280 1qhx_A CPT, protein (chloramph 89.6 0.17 5.9E-06 47.4 2.9 21 9-29 5-25 (178)
281 1g6h_A High-affinity branched- 89.6 0.15 5.3E-06 52.0 2.8 22 9-30 35-56 (257)
282 2yv5_A YJEQ protein; hydrolase 89.6 0.16 5.6E-06 53.1 3.1 22 9-31 167-188 (302)
283 1sgw_A Putative ABC transporte 89.6 0.16 5.5E-06 50.8 2.8 21 10-30 38-58 (214)
284 3vaa_A Shikimate kinase, SK; s 89.5 0.19 6.5E-06 48.6 3.2 21 9-29 27-47 (199)
285 1mv5_A LMRA, multidrug resista 89.5 0.17 6E-06 51.1 3.1 22 9-30 30-51 (243)
286 3ec2_A DNA replication protein 89.4 0.14 4.9E-06 48.4 2.3 22 9-30 40-61 (180)
287 1zd8_A GTP:AMP phosphotransfer 89.4 0.18 6.3E-06 49.6 3.1 23 7-29 7-29 (227)
288 3gfo_A Cobalt import ATP-bindi 89.3 0.17 5.6E-06 52.7 2.8 34 10-54 37-70 (275)
289 2pze_A Cystic fibrosis transme 89.3 0.17 5.8E-06 50.8 2.8 22 9-30 36-57 (229)
290 3lnc_A Guanylate kinase, GMP k 89.3 0.13 4.3E-06 51.0 1.8 22 9-30 29-51 (231)
291 2ff7_A Alpha-hemolysin translo 89.3 0.18 6.2E-06 51.3 3.0 22 9-30 37-58 (247)
292 1kht_A Adenylate kinase; phosp 89.3 0.21 7.1E-06 47.0 3.2 22 8-29 4-25 (192)
293 2d2e_A SUFC protein; ABC-ATPas 89.2 0.19 6.4E-06 51.2 3.1 22 9-30 31-52 (250)
294 1ji0_A ABC transporter; ATP bi 89.2 0.17 5.8E-06 51.2 2.8 22 9-30 34-55 (240)
295 4g1u_C Hemin import ATP-bindin 89.2 0.18 6E-06 52.1 2.9 22 10-31 40-61 (266)
296 1cke_A CK, MSSA, protein (cyti 89.1 0.2 6.9E-06 48.8 3.2 22 8-29 6-27 (227)
297 3fvq_A Fe(3+) IONS import ATP- 89.1 0.38 1.3E-05 52.0 5.6 35 10-55 33-67 (359)
298 2zu0_C Probable ATP-dependent 89.1 0.19 6.7E-06 51.7 3.2 22 9-30 48-69 (267)
299 2rhm_A Putative kinase; P-loop 89.1 0.19 6.5E-06 47.5 2.9 22 8-29 6-27 (193)
300 2olj_A Amino acid ABC transpor 89.0 0.18 6.1E-06 52.0 2.8 35 9-54 52-86 (263)
301 1jbk_A CLPB protein; beta barr 89.0 0.21 7E-06 46.1 3.0 21 9-29 45-65 (195)
302 2qi9_C Vitamin B12 import ATP- 89.0 0.18 6.3E-06 51.5 2.8 22 9-30 28-49 (249)
303 3b85_A Phosphate starvation-in 88.9 0.16 5.5E-06 50.5 2.3 22 9-30 24-45 (208)
304 3uie_A Adenylyl-sulfate kinase 88.9 0.2 6.8E-06 48.5 2.9 22 8-29 26-47 (200)
305 1vpl_A ABC transporter, ATP-bi 88.8 0.19 6.5E-06 51.6 2.8 22 9-30 43-64 (256)
306 1jjv_A Dephospho-COA kinase; P 88.8 0.25 8.6E-06 47.6 3.6 22 8-29 3-24 (206)
307 3cm0_A Adenylate kinase; ATP-b 88.8 0.26 8.9E-06 46.5 3.6 22 8-29 5-26 (186)
308 2ixe_A Antigen peptide transpo 88.7 0.19 6.5E-06 51.9 2.8 22 9-30 47-68 (271)
309 1np6_A Molybdopterin-guanine d 88.7 0.21 7.3E-06 48.3 3.0 22 9-30 8-29 (174)
310 2ghi_A Transport protein; mult 88.6 0.21 7.2E-06 51.2 3.0 22 9-30 48-69 (260)
311 2eyu_A Twitching motility prot 88.5 0.21 7.2E-06 51.3 2.9 21 9-29 27-47 (261)
312 3trf_A Shikimate kinase, SK; a 88.5 0.24 8.3E-06 46.7 3.1 22 8-29 6-27 (185)
313 2ihy_A ABC transporter, ATP-bi 88.5 0.22 7.6E-06 51.7 3.1 22 9-30 49-70 (279)
314 2plr_A DTMP kinase, probable t 88.3 0.27 9.1E-06 47.1 3.4 22 8-29 5-26 (213)
315 2nq2_C Hypothetical ABC transp 88.3 0.21 7.2E-06 51.1 2.8 22 9-30 33-54 (253)
316 1e4v_A Adenylate kinase; trans 88.3 0.25 8.6E-06 48.2 3.2 21 9-29 2-22 (214)
317 2v9p_A Replication protein E1; 88.3 0.23 7.7E-06 52.6 3.1 22 9-30 128-149 (305)
318 1lw7_A Transcriptional regulat 88.3 0.19 6.5E-06 53.7 2.5 24 7-30 170-193 (365)
319 2yz2_A Putative ABC transporte 88.3 0.21 7.3E-06 51.3 2.8 22 9-30 35-56 (266)
320 1qf9_A UMP/CMP kinase, protein 87.9 0.37 1.3E-05 45.2 3.9 28 1-29 1-28 (194)
321 1nn5_A Similar to deoxythymidy 87.8 0.3 1E-05 47.0 3.3 22 8-29 10-31 (215)
322 2w0m_A SSO2452; RECA, SSPF, un 87.7 0.26 8.9E-06 47.6 2.9 21 10-30 26-46 (235)
323 3aez_A Pantothenate kinase; tr 87.7 0.25 8.7E-06 52.1 3.0 24 7-30 90-113 (312)
324 1tev_A UMP-CMP kinase; ploop, 87.7 0.31 1.1E-05 45.8 3.4 22 8-29 4-25 (196)
325 4ido_A Atlastin-1; GTPase, GTP 87.6 0.65 2.2E-05 51.9 6.3 62 6-67 66-151 (457)
326 2pjz_A Hypothetical protein ST 87.6 0.27 9.3E-06 50.7 3.1 22 9-30 32-53 (263)
327 2qt1_A Nicotinamide riboside k 87.3 0.43 1.5E-05 46.1 4.2 24 7-30 21-44 (207)
328 2cdn_A Adenylate kinase; phosp 87.3 0.32 1.1E-05 46.8 3.2 23 7-29 20-42 (201)
329 1via_A Shikimate kinase; struc 87.3 0.27 9.4E-06 46.2 2.7 21 9-29 6-26 (175)
330 1aky_A Adenylate kinase; ATP:A 87.2 0.31 1.1E-05 47.6 3.2 22 8-29 5-26 (220)
331 2pt5_A Shikimate kinase, SK; a 87.1 0.35 1.2E-05 44.8 3.2 21 9-29 2-22 (168)
332 2v54_A DTMP kinase, thymidylat 87.0 0.34 1.2E-05 46.3 3.2 23 8-30 5-27 (204)
333 3sr0_A Adenylate kinase; phosp 86.9 0.34 1.2E-05 48.1 3.3 21 9-29 2-22 (206)
334 2jeo_A Uridine-cytidine kinase 86.9 0.3 1E-05 48.9 2.9 22 8-29 26-47 (245)
335 1ixz_A ATP-dependent metallopr 86.9 0.31 1.1E-05 48.7 2.9 21 10-30 52-72 (254)
336 2c95_A Adenylate kinase 1; tra 86.8 0.32 1.1E-05 46.0 2.9 22 8-29 10-31 (196)
337 2bbs_A Cystic fibrosis transme 86.8 0.31 1.1E-05 51.0 3.0 22 9-30 66-87 (290)
338 3iij_A Coilin-interacting nucl 86.8 0.32 1.1E-05 45.8 2.9 21 9-29 13-33 (180)
339 2z0h_A DTMP kinase, thymidylat 86.8 0.32 1.1E-05 46.0 2.9 21 9-29 2-22 (197)
340 2f1r_A Molybdopterin-guanine d 86.8 0.18 6.1E-06 48.7 1.1 22 9-30 4-25 (171)
341 2xb4_A Adenylate kinase; ATP-b 86.7 0.35 1.2E-05 47.7 3.2 21 9-29 2-22 (223)
342 1gtv_A TMK, thymidylate kinase 86.6 0.16 5.5E-06 49.0 0.7 21 9-29 2-22 (214)
343 3tlx_A Adenylate kinase 2; str 86.6 0.39 1.3E-05 48.3 3.5 23 7-29 29-51 (243)
344 2pbr_A DTMP kinase, thymidylat 86.6 0.37 1.3E-05 45.4 3.2 21 9-29 2-22 (195)
345 1y63_A LMAJ004144AAA protein; 86.5 0.37 1.3E-05 46.0 3.1 23 8-30 11-33 (184)
346 2bwj_A Adenylate kinase 5; pho 86.4 0.38 1.3E-05 45.6 3.2 22 8-29 13-34 (199)
347 2wwf_A Thymidilate kinase, put 86.3 0.35 1.2E-05 46.5 2.9 22 8-29 11-32 (212)
348 1rj9_A FTSY, signal recognitio 86.3 0.33 1.1E-05 51.1 2.9 22 9-30 104-125 (304)
349 2p65_A Hypothetical protein PF 86.2 0.3 1E-05 45.1 2.3 22 8-29 44-65 (187)
350 2yvu_A Probable adenylyl-sulfa 86.2 0.37 1.3E-05 45.8 2.9 22 8-29 14-35 (186)
351 1z47_A CYSA, putative ABC-tran 86.1 0.36 1.2E-05 52.2 3.1 34 10-54 44-77 (355)
352 2yyz_A Sugar ABC transporter, 86.0 0.36 1.2E-05 52.1 3.1 34 10-54 32-65 (359)
353 1zak_A Adenylate kinase; ATP:A 86.0 0.36 1.2E-05 47.2 2.9 22 8-29 6-27 (222)
354 2x8a_A Nuclear valosin-contain 86.0 0.36 1.2E-05 49.7 2.9 21 10-30 47-67 (274)
355 3kta_A Chromosome segregation 86.0 0.4 1.4E-05 45.1 3.1 20 10-29 29-48 (182)
356 2kjq_A DNAA-related protein; s 85.9 0.29 1E-05 45.8 2.1 22 9-30 38-59 (149)
357 2it1_A 362AA long hypothetical 85.9 0.38 1.3E-05 52.1 3.2 34 10-54 32-65 (362)
358 3b9q_A Chloroplast SRP recepto 85.8 0.37 1.3E-05 50.6 3.0 22 9-30 102-123 (302)
359 1cr0_A DNA primase/helicase; R 85.8 0.36 1.2E-05 49.5 2.9 21 10-30 38-58 (296)
360 1rz3_A Hypothetical protein rb 85.7 0.39 1.3E-05 46.6 2.9 22 8-29 23-44 (201)
361 1zcb_A G alpha I/13; GTP-bindi 85.7 0.42 1.4E-05 51.6 3.4 23 5-27 31-53 (362)
362 3nh6_A ATP-binding cassette SU 85.7 0.25 8.7E-06 52.2 1.7 35 9-54 82-116 (306)
363 1e6c_A Shikimate kinase; phosp 85.7 0.41 1.4E-05 44.4 2.9 21 9-29 4-24 (173)
364 3be4_A Adenylate kinase; malar 85.6 0.42 1.4E-05 46.8 3.1 22 8-29 6-27 (217)
365 1gvn_B Zeta; postsegregational 85.6 0.37 1.3E-05 50.0 2.8 22 8-29 34-55 (287)
366 1g29_1 MALK, maltose transport 85.6 0.39 1.3E-05 52.1 3.1 35 10-55 32-66 (372)
367 3tui_C Methionine import ATP-b 85.6 0.4 1.4E-05 52.1 3.2 34 10-54 57-90 (366)
368 2cvh_A DNA repair and recombin 85.5 0.4 1.4E-05 46.1 2.9 20 10-29 23-42 (220)
369 3bos_A Putative DNA replicatio 85.5 0.4 1.4E-05 46.3 2.9 22 8-29 53-74 (242)
370 3rlf_A Maltose/maltodextrin im 85.4 0.41 1.4E-05 52.3 3.2 35 10-55 32-66 (381)
371 1v43_A Sugar-binding transport 85.4 0.41 1.4E-05 52.0 3.2 34 10-54 40-73 (372)
372 1n0w_A DNA repair protein RAD5 85.4 0.41 1.4E-05 46.8 2.9 21 10-30 27-47 (243)
373 1ukz_A Uridylate kinase; trans 85.3 0.5 1.7E-05 45.3 3.5 22 8-29 16-37 (203)
374 1sq5_A Pantothenate kinase; P- 85.3 0.39 1.3E-05 50.1 2.9 22 8-29 81-102 (308)
375 3e70_C DPA, signal recognition 85.3 0.4 1.4E-05 51.1 2.9 23 8-30 130-152 (328)
376 1vht_A Dephospho-COA kinase; s 85.2 0.57 1.9E-05 45.6 3.8 22 8-29 5-26 (218)
377 3a4m_A L-seryl-tRNA(SEC) kinas 85.2 0.42 1.4E-05 48.5 2.9 22 8-29 5-26 (260)
378 1njg_A DNA polymerase III subu 85.1 0.44 1.5E-05 45.4 2.9 21 9-29 47-67 (250)
379 2vli_A Antibiotic resistance p 85.0 0.33 1.1E-05 45.5 2.0 22 8-29 6-27 (183)
380 1iy2_A ATP-dependent metallopr 84.9 0.44 1.5E-05 48.5 2.9 21 10-30 76-96 (278)
381 3jvv_A Twitching mobility prot 84.8 0.43 1.5E-05 51.4 2.9 21 9-29 125-145 (356)
382 1uf9_A TT1252 protein; P-loop, 84.7 0.57 1.9E-05 44.6 3.5 24 7-30 8-31 (203)
383 2gza_A Type IV secretion syste 84.7 0.45 1.5E-05 51.0 3.1 22 9-30 177-198 (361)
384 2iyv_A Shikimate kinase, SK; t 84.7 0.47 1.6E-05 44.7 2.9 21 9-29 4-24 (184)
385 2pez_A Bifunctional 3'-phospho 84.6 0.49 1.7E-05 44.6 2.9 22 8-29 6-27 (179)
386 2vp4_A Deoxynucleoside kinase; 84.6 0.35 1.2E-05 48.0 2.0 23 8-30 21-43 (230)
387 2ze6_A Isopentenyl transferase 84.6 0.46 1.6E-05 48.2 2.9 21 9-29 3-23 (253)
388 2chg_A Replication factor C sm 84.5 0.48 1.7E-05 44.7 2.9 20 10-29 41-60 (226)
389 1in4_A RUVB, holliday junction 84.3 0.46 1.6E-05 50.0 2.9 22 9-30 53-74 (334)
390 4e22_A Cytidylate kinase; P-lo 84.3 0.55 1.9E-05 47.4 3.3 21 8-28 28-48 (252)
391 1ak2_A Adenylate kinase isoenz 84.2 0.54 1.8E-05 46.6 3.2 22 8-29 17-38 (233)
392 2ewv_A Twitching motility prot 84.1 0.46 1.6E-05 51.3 2.8 21 9-29 138-158 (372)
393 3d31_A Sulfate/molybdate ABC t 84.1 0.35 1.2E-05 52.1 1.8 34 10-54 29-62 (348)
394 3gd7_A Fusion complex of cysti 84.0 0.5 1.7E-05 51.6 3.1 22 9-30 49-70 (390)
395 2pt7_A CAG-ALFA; ATPase, prote 83.9 0.45 1.5E-05 50.5 2.6 22 9-30 173-194 (330)
396 1xjc_A MOBB protein homolog; s 83.5 0.6 2.1E-05 45.2 3.1 21 9-29 6-26 (169)
397 1lv7_A FTSH; alpha/beta domain 83.5 0.56 1.9E-05 46.9 3.0 21 9-29 47-67 (257)
398 4eaq_A DTMP kinase, thymidylat 83.5 0.56 1.9E-05 46.9 3.0 22 8-29 27-48 (229)
399 1m7g_A Adenylylsulfate kinase; 83.4 0.56 1.9E-05 45.6 2.9 22 8-29 26-47 (211)
400 2obl_A ESCN; ATPase, hydrolase 83.4 0.57 2E-05 50.2 3.2 23 9-31 73-95 (347)
401 3umf_A Adenylate kinase; rossm 83.1 0.64 2.2E-05 46.7 3.2 20 10-29 32-51 (217)
402 2og2_A Putative signal recogni 83.0 0.57 1.9E-05 50.6 3.0 22 9-30 159-180 (359)
403 3tqc_A Pantothenate kinase; bi 83.0 0.57 2E-05 49.8 2.9 23 7-29 92-114 (321)
404 2w58_A DNAI, primosome compone 83.0 0.6 2.1E-05 44.7 2.9 22 8-29 55-76 (202)
405 1zuh_A Shikimate kinase; alpha 82.8 0.7 2.4E-05 42.9 3.2 22 8-29 8-29 (168)
406 1nij_A Hypothetical protein YJ 82.8 0.49 1.7E-05 49.7 2.3 22 10-31 7-28 (318)
407 1odf_A YGR205W, hypothetical 3 82.7 0.75 2.6E-05 48.0 3.7 24 6-29 30-53 (290)
408 1oxx_K GLCV, glucose, ABC tran 82.7 0.34 1.2E-05 52.2 1.1 35 10-55 34-68 (353)
409 2p5t_B PEZT; postsegregational 82.5 0.49 1.7E-05 47.7 2.2 23 7-29 32-54 (253)
410 2dr3_A UPF0273 protein PH0284; 82.3 0.69 2.4E-05 45.2 3.1 20 10-29 26-45 (247)
411 1f2t_A RAD50 ABC-ATPase; DNA d 82.2 0.75 2.6E-05 43.0 3.1 19 10-28 26-44 (149)
412 2npi_A Protein CLP1; CLP1-PCF1 82.1 0.61 2.1E-05 52.0 2.9 22 9-30 140-161 (460)
413 1ltq_A Polynucleotide kinase; 82.0 0.71 2.4E-05 47.2 3.1 22 8-29 3-24 (301)
414 2yhs_A FTSY, cell division pro 81.9 0.64 2.2E-05 52.5 2.9 21 9-29 295-315 (503)
415 2qby_A CDC6 homolog 1, cell di 81.8 0.67 2.3E-05 48.1 2.9 21 9-29 47-67 (386)
416 1p9r_A General secretion pathw 81.7 0.67 2.3E-05 51.0 2.9 22 9-30 169-190 (418)
417 1nlf_A Regulatory protein REPA 81.5 0.7 2.4E-05 47.0 2.9 20 10-29 33-52 (279)
418 3co5_A Putative two-component 81.1 2.4 8.4E-05 38.7 6.2 23 8-30 28-50 (143)
419 2dpy_A FLII, flagellum-specifi 80.8 0.79 2.7E-05 50.7 3.2 23 9-31 159-181 (438)
420 3h4m_A Proteasome-activating n 80.7 0.77 2.6E-05 46.3 2.8 23 8-30 52-74 (285)
421 3syl_A Protein CBBX; photosynt 80.7 1 3.5E-05 45.9 3.8 23 7-29 67-89 (309)
422 1yqt_A RNAse L inhibitor; ATP- 80.6 0.85 2.9E-05 51.7 3.4 23 9-31 49-71 (538)
423 3b9p_A CG5977-PA, isoform A; A 80.6 0.78 2.7E-05 46.7 2.9 23 8-30 55-77 (297)
424 2qz4_A Paraplegin; AAA+, SPG7, 80.5 0.83 2.8E-05 45.2 2.9 21 9-29 41-61 (262)
425 2oap_1 GSPE-2, type II secreti 80.3 0.78 2.7E-05 51.8 3.0 22 9-30 262-283 (511)
426 2qen_A Walker-type ATPase; unk 80.3 0.83 2.8E-05 46.8 2.9 22 9-30 33-54 (350)
427 3b60_A Lipid A export ATP-bind 80.2 0.81 2.8E-05 52.1 3.1 22 9-30 371-392 (582)
428 3nwj_A ATSK2; P loop, shikimat 79.9 0.88 3E-05 46.5 2.9 21 9-29 50-70 (250)
429 3b5x_A Lipid A export ATP-bind 79.8 0.9 3.1E-05 51.7 3.3 22 9-30 371-392 (582)
430 1fnn_A CDC6P, cell division co 79.7 0.88 3E-05 47.6 2.9 22 9-30 46-67 (389)
431 2fna_A Conserved hypothetical 79.6 0.88 3E-05 46.7 2.9 22 9-30 32-53 (357)
432 1uj2_A Uridine-cytidine kinase 79.4 1.1 3.6E-05 45.1 3.3 23 7-29 22-44 (252)
433 2f6r_A COA synthase, bifunctio 79.2 1.1 3.7E-05 46.2 3.4 22 7-28 75-96 (281)
434 1azs_C GS-alpha; complex (lyas 79.1 1.2 4.1E-05 48.9 3.8 24 5-28 38-61 (402)
435 3euj_A Chromosome partition pr 79.1 0.91 3.1E-05 51.0 2.9 22 9-30 31-52 (483)
436 1l8q_A Chromosomal replication 79.0 0.92 3.2E-05 47.0 2.8 21 9-29 39-59 (324)
437 1ofh_A ATP-dependent HSL prote 79.0 0.98 3.3E-05 45.7 2.9 21 9-29 52-72 (310)
438 1svm_A Large T antigen; AAA+ f 78.9 0.93 3.2E-05 49.2 2.9 21 9-29 171-191 (377)
439 3ozx_A RNAse L inhibitor; ATP 78.8 0.9 3.1E-05 51.6 2.8 22 10-31 28-49 (538)
440 3r20_A Cytidylate kinase; stru 78.7 1.1 3.7E-05 45.5 3.2 22 8-29 10-31 (233)
441 3n70_A Transport activator; si 78.6 1.1 3.7E-05 41.1 2.9 23 8-30 25-47 (145)
442 2px0_A Flagellar biosynthesis 78.6 0.98 3.3E-05 47.2 2.9 21 9-29 107-127 (296)
443 2yl4_A ATP-binding cassette SU 78.1 0.83 2.8E-05 52.1 2.3 34 9-53 372-405 (595)
444 1sxj_E Activator 1 40 kDa subu 77.9 0.91 3.1E-05 47.2 2.4 20 10-29 39-58 (354)
445 3t15_A Ribulose bisphosphate c 77.9 1.1 3.7E-05 46.3 3.0 22 8-29 37-58 (293)
446 3qf7_A RAD50; ABC-ATPase, ATPa 77.9 1.1 3.8E-05 48.0 3.1 19 10-28 26-44 (365)
447 1q3t_A Cytidylate kinase; nucl 77.8 1.2 4.2E-05 44.0 3.2 24 6-29 15-38 (236)
448 3j16_B RLI1P; ribosome recycli 77.7 1.1 3.8E-05 51.7 3.2 23 9-31 105-127 (608)
449 3cf0_A Transitional endoplasmi 77.2 1.1 3.9E-05 46.2 2.8 22 9-30 51-72 (301)
450 3ake_A Cytidylate kinase; CMP 77.2 1.2 4.2E-05 42.3 2.9 21 9-29 4-24 (208)
451 3qf4_B Uncharacterized ABC tra 77.1 0.95 3.3E-05 51.8 2.4 35 9-54 383-417 (598)
452 1yqt_A RNAse L inhibitor; ATP- 77.1 1.3 4.3E-05 50.3 3.4 23 9-31 314-336 (538)
453 3zvl_A Bifunctional polynucleo 77.0 1.1 3.8E-05 48.8 2.9 21 9-29 260-280 (416)
454 4fcw_A Chaperone protein CLPB; 77.0 1.2 4.1E-05 45.4 2.9 23 8-30 48-70 (311)
455 2v1u_A Cell division control p 76.9 1 3.5E-05 46.8 2.4 21 9-29 46-66 (387)
456 1vma_A Cell division protein F 76.5 1.2 4.3E-05 46.8 2.9 21 9-29 106-126 (306)
457 3qks_A DNA double-strand break 76.4 1.4 4.8E-05 43.1 3.1 19 10-28 26-44 (203)
458 1d2n_A N-ethylmaleimide-sensit 76.4 1.3 4.4E-05 44.7 2.9 24 7-30 64-87 (272)
459 1sxj_D Activator 1 41 kDa subu 76.4 1.3 4.3E-05 45.9 2.9 21 10-30 61-81 (353)
460 3ozx_A RNAse L inhibitor; ATP 75.9 1.2 4.2E-05 50.5 2.8 23 9-31 296-318 (538)
461 3bk7_A ABC transporter ATP-bin 75.9 1.3 4.5E-05 51.0 3.2 23 9-31 384-406 (607)
462 3bk7_A ABC transporter ATP-bin 75.8 1.3 4.5E-05 51.0 3.1 23 9-31 119-141 (607)
463 1sxj_C Activator 1 40 kDa subu 75.8 1.3 4.4E-05 46.3 2.8 21 10-30 49-69 (340)
464 3uk6_A RUVB-like 2; hexameric 75.5 1.3 4.6E-05 46.2 2.9 21 9-29 72-92 (368)
465 4a82_A Cystic fibrosis transme 75.5 0.86 3E-05 51.9 1.5 35 9-54 369-403 (578)
466 2qby_B CDC6 homolog 3, cell di 75.0 1.4 4.9E-05 46.1 2.9 21 9-29 47-67 (384)
467 2grj_A Dephospho-COA kinase; T 75.0 1.7 5.9E-05 42.4 3.3 24 6-29 11-34 (192)
468 1pzn_A RAD51, DNA repair and r 74.8 1.4 4.8E-05 47.0 2.9 21 10-30 134-154 (349)
469 3qf4_A ABC transporter, ATP-bi 74.5 1.1 3.7E-05 51.3 1.9 22 9-30 371-392 (587)
470 4f4c_A Multidrug resistance pr 74.4 1.4 4.9E-05 55.1 3.1 34 9-53 1107-1140(1321)
471 1tf7_A KAIC; homohexamer, hexa 74.2 1.5 5.2E-05 49.2 3.0 19 10-28 42-60 (525)
472 3pxg_A Negative regulator of g 73.9 1.5 5.2E-05 48.5 2.9 21 9-29 203-223 (468)
473 2qmh_A HPR kinase/phosphorylas 73.5 1.7 5.9E-05 43.5 2.9 24 8-31 35-58 (205)
474 3pfi_A Holliday junction ATP-d 73.5 1.6 5.6E-05 45.1 2.9 22 9-30 57-78 (338)
475 1xwi_A SKD1 protein; VPS4B, AA 73.4 1.6 5.6E-05 45.7 2.9 22 9-30 47-68 (322)
476 3uc9_A Increased recombination 73.4 4.7 0.00016 41.1 6.1 83 9-99 29-122 (233)
477 2ocp_A DGK, deoxyguanosine kin 73.4 1.8 6.2E-05 42.9 3.1 22 8-29 3-24 (241)
478 2zts_A Putative uncharacterize 73.3 1.9 6.4E-05 42.1 3.1 19 10-28 33-51 (251)
479 3j16_B RLI1P; ribosome recycli 73.2 1.7 5.8E-05 50.1 3.2 22 10-31 381-402 (608)
480 3foz_A TRNA delta(2)-isopenten 73.1 2.2 7.5E-05 45.4 3.8 22 9-30 12-33 (316)
481 1p5z_B DCK, deoxycytidine kina 73.1 1.1 3.8E-05 45.1 1.4 23 7-29 24-46 (263)
482 2r62_A Cell division protease 73.1 0.87 3E-05 45.6 0.7 20 10-29 47-66 (268)
483 1tue_A Replication protein E1; 72.9 1.4 4.8E-05 44.4 2.1 21 9-29 60-80 (212)
484 3eie_A Vacuolar protein sortin 72.8 1.7 5.9E-05 45.2 2.9 23 8-30 52-74 (322)
485 2iw3_A Elongation factor 3A; a 72.6 1.9 6.5E-05 52.5 3.5 24 9-32 463-486 (986)
486 4edh_A DTMP kinase, thymidylat 72.4 1.9 6.4E-05 42.9 2.9 22 8-29 7-28 (213)
487 2bjv_A PSP operon transcriptio 72.0 2 6.8E-05 43.0 3.0 23 8-30 30-52 (265)
488 2qgz_A Helicase loader, putati 71.8 2 7E-05 44.8 3.1 22 8-29 153-174 (308)
489 3d3q_A TRNA delta(2)-isopenten 71.6 2.3 7.7E-05 45.7 3.5 22 8-29 8-29 (340)
490 3crm_A TRNA delta(2)-isopenten 71.5 2 6.8E-05 45.8 3.0 22 8-29 6-27 (323)
491 1um8_A ATP-dependent CLP prote 71.4 2 6.7E-05 45.6 2.9 23 8-30 73-95 (376)
492 3gmt_A Adenylate kinase; ssgci 71.3 2.4 8.1E-05 43.1 3.4 24 6-29 7-30 (230)
493 4f4c_A Multidrug resistance pr 71.2 3.4 0.00012 51.8 5.4 34 9-53 446-479 (1321)
494 3v9p_A DTMP kinase, thymidylat 71.2 1.6 5.5E-05 44.0 2.1 22 8-29 26-47 (227)
495 3lda_A DNA repair protein RAD5 71.1 2 6.9E-05 46.9 3.0 19 10-28 181-199 (400)
496 3qkt_A DNA double-strand break 71.0 2.1 7.3E-05 45.1 3.1 19 10-28 26-44 (339)
497 3m6a_A ATP-dependent protease 70.9 1.9 6.4E-05 48.8 2.8 21 9-29 110-130 (543)
498 2orw_A Thymidine kinase; TMTK, 70.6 2.3 8E-05 41.0 3.0 19 10-28 6-24 (184)
499 1hqc_A RUVB; extended AAA-ATPa 70.3 1.6 5.5E-05 44.6 1.9 22 8-29 39-60 (324)
500 2eki_A DRG 1, developmentally- 70.3 1.9 6.6E-05 38.0 2.1 43 267-309 10-54 (93)
No 1
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=100.00 E-value=9.1e-74 Score=676.02 Aligned_cols=245 Identities=53% Similarity=0.872 Sum_probs=222.6
Q ss_pred HHHHHhhhccCCccccccccCCCCcccccchhhhcchHHHHHHHHHHHHhhcccceeEEEeeeechHHHHHHhHHHHHHH
Q psy17467 386 QIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSR 465 (730)
Q Consensus 386 ~~~~kkkk~~k~kK~~~~~~~pg~es~~~~~~~~~~~d~~~~~l~~lc~~~~~~~~i~v~~~~f~p~eyl~~~l~~~f~~ 465 (730)
++.++|+||+|+||+.+++.+||+||+|+||+++|+|||+|++|||||+|||++++|+||||+|+|||||++|||+||++
T Consensus 639 ~~~~~k~kk~~~~k~~~~~~~PG~ES~r~~r~~~t~~dkl~~~LteLc~aln~~~~i~V~dh~f~PrEyL~~~Le~~f~~ 718 (1128)
T 3p8c_B 639 QAVNKKSKKQTGKKGEPEREKPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTK 718 (1128)
T ss_dssp HHTTC--------------CCTTGGGCCSCTTSCCHHHHHHHHHHHHHHHHTSCSCEEETTEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccCccCCCCCCCCCccccccChHHHhhHHHHHHHHHHHHHHhccCCCeeEEeeeeccHHHHHHHHHHHHHH
Confidence 45666778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCCCcccCcHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHh
Q psy17467 466 ALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLR 545 (730)
Q Consensus 466 ~~~~~~~~~~~~~~~~rps~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~ll~~tq~~d~~~~~~~~~~~~~~~~~~~~~ 545 (730)
+|++|++||++|++|+||||||++|||||++||++||||+||+|++||+|||||||++|++|++
T Consensus 719 ~l~~~~~~~~~~~~i~RPSell~~l~a~m~vlq~~e~~v~iDvt~~i~~vLLqqtq~~D~~G~~---------------- 782 (1128)
T 3p8c_B 719 SIVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSHGEP---------------- 782 (1128)
T ss_dssp HHHHHTTCBTTTTBCCCHHHHHHHHHHHHHHHHHGGGTSSCCHHHHHHHHHHHTTSSBCTTSCB----------------
T ss_pred HHHHHhccCCCccccCChHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCccccCCCc----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcccchhheeeeccceeccchhhhhhhhhhhhhcccccCccchhhHHHHHHHHHHHhccCCCceEeecccc
Q psy17467 546 RVSETQVKSLNLLNFLRVYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSAGNICFSLNQR 625 (730)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~y~~wy~e~l~~~~~~~~~~~s~~~~ 625 (730)
|||++||+||+|+|+|+||+|||||||+++
T Consensus 783 --------------------------------------------------tit~~yt~WYle~llr~~s~~~iv~sp~~~ 812 (1128)
T 3p8c_B 783 --------------------------------------------------TITSLYTNWYLETLLRQVSNGHIAYFPAMK 812 (1128)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHTHHHHHHTTSEEEETTTT
T ss_pred --------------------------------------------------cHHHHHHHHHHHHHHHhccCCceEEccHHH
Confidence 899999999999999999999999999999
Q ss_pred cccccCCCCCccccccccCCHHHHHHHHHhHcchhhHHHHHHHHH----HhhchhhhhhcCCCCccccccceeeccccc
Q psy17467 626 AFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLK----AFNAAHEMVHNQSDVNFPRLGQMIMDYEVP 700 (730)
Q Consensus 626 ~f~s~~~~~~~~~~ae~~~d~~el~al~~l~gpyg~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (730)
||||.+++|+++|+||+|||++||||||+||||||||+|||+||| ..+|+.+++..|.|++..-.+. |+.|
T Consensus 813 ~Fvs~~~~g~~~f~AE~~tD~~ELrAL~eLiGPYG~k~l~~~L~~hi~~~v~elk~~v~~N~~~L~~lr~~----~~~~ 887 (1128)
T 3p8c_B 813 AFVNLPTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVLTQMRTS----FDKP 887 (1128)
T ss_dssp EEEECSSSCCCCSCTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHC----TTCH
T ss_pred HhhcCCCCCCCCcCHHhcCCHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh----cCCH
Confidence 999999999999999999999999999999999999999999999 8999999999999987765553 5666
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.1e-33 Score=279.60 Aligned_cols=166 Identities=41% Similarity=0.665 Sum_probs=141.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+|||++|||||||++||+++.|...+.||+|.++..+.+.+++..+.++||||+|+++|..++..|++++|++|+
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.||+++..|+..+..... +++|++|||||+|+.+
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~-------------------------------~~~piilVgNK~Dl~~-------- 132 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERG-------------------------------SDVIIMLVGNKTDLAD-------- 132 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHT-------------------------------TSSEEEEEEECTTCGG--------
T ss_pred EeecchhHHHHHHHHHHHHHHHhcC-------------------------------CCCeEEEEeeccchHh--------
Confidence 9999999999999999999877542 5677788888888752
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
.|.|+.++++++|+.+|+.|+||||++|.||+++|+.|
T Consensus 133 ------------------------------------------~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 133 ------------------------------------------KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp ------------------------------------------GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred ------------------------------------------cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 36899999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy17467 246 AAELMEK 252 (730)
Q Consensus 246 i~~l~e~ 252 (730)
++.+...
T Consensus 171 ~~~i~~~ 177 (216)
T 4dkx_A 171 AAALPGM 177 (216)
T ss_dssp HHHC---
T ss_pred HHHHHhh
Confidence 9887543
No 3
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.96 E-value=2.1e-31 Score=294.44 Aligned_cols=244 Identities=15% Similarity=0.045 Sum_probs=187.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc----------hhhhhhhH
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ----------ERFRSITQ 74 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~----------e~~~sl~~ 74 (730)
..+||+++|++|||||||+|+|++..+. ....++++.+.....+.+++. .+.||||||+ +.|..++.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4689999999999999999999988764 444566666666677788884 5899999998 45554444
Q ss_pred -hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 75 -SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 75 -~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
.+++.||++|+|+|++++.++++. .|+..+.. .+.|+++|+||+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----------------------------------~~~~iiiv~NK~ 296 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----------------------------------AGKAVVIVVNKW 296 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----------------------------------TTCEEEEEEECG
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----------------------------------cCCcEEEEEECc
Confidence 478999999999999999998886 46665532 467888899999
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH-----HHHHHHhcCCeEE
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV-----GEDFAKRHDMYYL 228 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee-----~~~lak~lg~~fv 228 (730)
|+.+. +.++.++ .+.++...+++++
T Consensus 297 Dl~~~--------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 297 DAVDK--------------------------------------------------DESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp GGSCC--------------------------------------------------CTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred cCCCc--------------------------------------------------chHHHHHHHHHHHHhcccCCCCCEE
Confidence 98631 1111122 2333334578999
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCc
Q psy17467 229 ETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNID 308 (730)
Q Consensus 229 EtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~ 308 (730)
+|||++|.||+++|+.+.+.+..+..+..+...+++...+ ...++||...++..+..|++|....||.|
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~-----------~~~~~pp~~~~~~~~i~y~~q~~~~pp~~ 395 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDA-----------VAMNPTPTHNGSRLKIYYATQVSVKPPSF 395 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHH-----------HHHSCCCEETTEECCEEEEEEEETTTTEE
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-----------HHhCCCCccCCcceeEEeEecCCCCCCEE
Confidence 9999999999999999999887665555555555544444 23456777888899999999999999999
Q ss_pred eeeeccccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467 309 IKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG 347 (730)
Q Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (730)
+.+++.++.++.+|.|||+|.+|+.|++.|+|+++.+++
T Consensus 396 ~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~ 434 (436)
T 2hjg_A 396 VVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARA 434 (436)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHHHHCCTTSCCEEEEEE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCceeEEEEEec
Confidence 999999999999999999999999999999999999986
No 4
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.96 E-value=3.5e-30 Score=286.23 Aligned_cols=245 Identities=15% Similarity=0.047 Sum_probs=188.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhhhh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAG----------QERFRSIT 73 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG----------~e~~~sl~ 73 (730)
+..+||+++|++|||||||+++|++... .....++++.+.....+.+++ ..+.|||||| ++.+..++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3568999999999999999999997653 344456666666666777787 4789999999 67777665
Q ss_pred H-hhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467 74 Q-SYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK 152 (730)
Q Consensus 74 ~-~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK 152 (730)
. .+++.||++|+|+|+++..+.++ ..|+..+.. .+.|+++|+||
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~----------------------------------~~~~~ilv~NK 315 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE----------------------------------AGKAVVIVVNK 315 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----------------------------------TTCEEEEEEEC
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH----------------------------------cCCCEEEEEEC
Confidence 5 47899999999999998654333 334444432 45788888899
Q ss_pred CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-----CCeE
Q psy17467 153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-----DMYY 227 (730)
Q Consensus 153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-----g~~f 227 (730)
+|+.+ .+.++.+++.+.++.. ++++
T Consensus 316 ~Dl~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 316 WDAVD--------------------------------------------------KDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp GGGSC--------------------------------------------------CCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred hhcCC--------------------------------------------------CchHHHHHHHHHHHHhcccCCCCCE
Confidence 99853 1234445555555543 5799
Q ss_pred EEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCC
Q psy17467 228 LETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNI 307 (730)
Q Consensus 228 vEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~ 307 (730)
++|||++|.||+++|+.+.+.+..+..+..+...+++...+ ...++||...+++.+..|++|.+..||.
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~-----------~~~~~pp~~~~~~~ki~y~~q~~~~pp~ 414 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDA-----------VAMNPTPTHNGSRLKIYYATQVSVKPPS 414 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHH-----------HHHSCCCEETTEECCEEEEEEEETTTTE
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH-----------HHhCCCCCCCCceeeEEEEecCCCCCCE
Confidence 99999999999999999999887776655555555544443 2345677778888999999999999999
Q ss_pred ceeeeccccccchhhHHHhHhhhhhhhccCCceeEEEeec
Q psy17467 308 DIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVYLSG 347 (730)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (730)
|+.+++.++.++.+|.|||+|.+|+.|++.|+|+++.+++
T Consensus 415 ~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~ 454 (456)
T 4dcu_A 415 FVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARA 454 (456)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHCCTTCCCEEEEEC
T ss_pred EEEEecCcccCCHHHHHHHHHHHHHhCCCCceeEEEEEec
Confidence 9999999999999999999999999999999999999997
No 5
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=230.35 Aligned_cols=173 Identities=43% Similarity=0.730 Sum_probs=152.0
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
++++..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 46778899999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++|+|||++++.+|+.+..|+..+.... ++.|+++|+||+|+.+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~---- 127 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNC--------------------------------DDVCRILVGNKNDDPE---- 127 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHC--------------------------------TTSEEEEEEECTTCGG----
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECCCCch----
Confidence 9999999999999999999999986643 4678888889988753
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.+.+..+++..++...++++++|||++|.||+++
T Consensus 128 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 128 ----------------------------------------------RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp ----------------------------------------------GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred ----------------------------------------------hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 2456778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17467 242 FMQIAAELMEKLAEK 256 (730)
Q Consensus 242 Fe~Li~~l~e~~~~~ 256 (730)
|++|.+.+.+...+.
T Consensus 162 ~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 162 FNCITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999997766554
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=1.4e-28 Score=235.17 Aligned_cols=174 Identities=44% Similarity=0.829 Sum_probs=125.3
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA 80 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A 80 (730)
-+++++.+||+|+|++|||||||+++|+++.+...+.|+++.++....+.+++..+.+++|||||++++..++..+++++
T Consensus 2 ~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 81 (183)
T 2fu5_C 2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 81 (183)
T ss_dssp -CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcC
Confidence 04578899999999999999999999999998888889999888888899999999999999999999999999999999
Q ss_pred cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
|++|+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~nK~Dl~~--- 127 (183)
T 2fu5_C 82 MGIMLVYDITNEKSFDNIRNWIRNIEEHA-------------------------------SADVEKMILGNKCDVND--- 127 (183)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEEC--CCS---
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECccCCc---
Confidence 99999999999999999999999987643 14677788888888742
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee 240 (730)
.+.++.++++++++.+++++++|||++|.||++
T Consensus 128 -----------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 128 -----------------------------------------------KRQVSKERGEKLALDYGIKFMETSAKANINVEN 160 (183)
T ss_dssp -----------------------------------------------CCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred -----------------------------------------------cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 246778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17467 241 LFMQIAAELMEKLAE 255 (730)
Q Consensus 241 LFe~Li~~l~e~~~~ 255 (730)
+|++|.+.+.++..+
T Consensus 161 l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 161 AFFTLARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998776554
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=9.5e-28 Score=229.57 Aligned_cols=172 Identities=44% Similarity=0.803 Sum_probs=153.0
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
++++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++...+..+++++|
T Consensus 5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 84 (186)
T 2bme_A 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 84 (186)
T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence 35678899999999999999999999999998888899998998899999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++|+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~piilv~nK~Dl~~---- 129 (186)
T 2bme_A 85 GALLVYDITSRETYNALTNWLTDARMLA-------------------------------SQNIVIILCGNKKDLDA---- 129 (186)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGG----
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccccc----
Confidence 9999999999999999999999886543 14677888888888842
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.+.++.++++++++..++++++|||++|.||+++
T Consensus 130 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 130 ----------------------------------------------DREVTFLEASRFAQENELMFLETSALTGENVEEA 163 (186)
T ss_dssp ----------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred ----------------------------------------------ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 2456778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 242 FMQIAAELMEKLA 254 (730)
Q Consensus 242 Fe~Li~~l~e~~~ 254 (730)
|+++++.+.+...
T Consensus 164 ~~~l~~~~~~~~~ 176 (186)
T 2bme_A 164 FVQCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876543
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=229.86 Aligned_cols=171 Identities=46% Similarity=0.856 Sum_probs=152.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+++..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 45678999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~p~ilv~nK~Dl~~----- 135 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYAS-------------------------------ENVNKLLVGNKCDLTT----- 135 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECTTCTT-----
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-------------------------------CCCCEEEEEECccccc-----
Confidence 9999999999999999999999876542 4677788888888752
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.+..+++++++..+++++++|||++|.||+++|
T Consensus 136 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 170 (196)
T 3tkl_A 136 ---------------------------------------------KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170 (196)
T ss_dssp ---------------------------------------------TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Confidence 24677789999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 243 MQIAAELMEKLA 254 (730)
Q Consensus 243 e~Li~~l~e~~~ 254 (730)
++|++.+.++..
T Consensus 171 ~~l~~~i~~~~~ 182 (196)
T 3tkl_A 171 MTMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhc
Confidence 999999866533
No 9
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=1.2e-27 Score=232.00 Aligned_cols=171 Identities=45% Similarity=0.806 Sum_probs=148.2
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+.++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+++|||+|++++..++..+++++|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 45678999999999999999999999999988888999988988899999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~-------------------------------~~~~piilv~nK~Dl~~----- 140 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHS-------------------------------SSNMVIMLIGNKSDLES----- 140 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG-----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECcccCC-----
Confidence 999999999999999999999987643 24678888888888852
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.+..++++++++..++.+++|||++|.||+++|
T Consensus 141 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 141 ---------------------------------------------RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 24577889999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 243 MQIAAELMEKLA 254 (730)
Q Consensus 243 e~Li~~l~e~~~ 254 (730)
++|++.+.++..
T Consensus 176 ~~l~~~i~~~~~ 187 (191)
T 2a5j_A 176 INTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 10
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.3e-27 Score=236.62 Aligned_cols=171 Identities=72% Similarity=1.201 Sum_probs=152.3
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA 80 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A 80 (730)
|+++++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+++|||+|++++..++..+++++
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 56788899999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
|++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilv~NK~Dl~~--- 145 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYAS-------------------------------NKVITVLVGNKIDLAE--- 145 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECGGGGG---
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-------------------------------CCCCEEEEEECCCCcc---
Confidence 999999999999999999999999876431 4567788888888742
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee 240 (730)
.+.+..++++++++..+++|++|||++|.||++
T Consensus 146 -----------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 146 -----------------------------------------------RREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp -----------------------------------------------GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred -----------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 245778889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 241 LFMQIAAELMEK 252 (730)
Q Consensus 241 LFe~Li~~l~e~ 252 (730)
+|+++++.+.++
T Consensus 179 l~~~l~~~i~~~ 190 (201)
T 2ew1_A 179 LFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 11
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=1.2e-27 Score=234.23 Aligned_cols=174 Identities=47% Similarity=0.858 Sum_probs=153.8
Q ss_pred CC-CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcc
Q psy17467 1 ME-DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS 79 (730)
Q Consensus 1 m~-~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ 79 (730)
|+ ++++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++..++..++++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 65 67889999999999999999999999999988888999999988999999999999999999999999999999999
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e 159 (730)
+|++|+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~nK~Dl~~-- 127 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYA-------------------------------TSTVLKLLVGNKCDLKD-- 127 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCTT--
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECCCCcc--
Confidence 999999999999999999999999987643 14677888888888852
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChH
Q psy17467 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE 239 (730)
Q Consensus 160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVe 239 (730)
.+.+..++++.++...++++++|||++|.||+
T Consensus 128 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 128 ------------------------------------------------KRVVEYDVAKEFADANKMPFLETSALDSTNVE 159 (206)
T ss_dssp ------------------------------------------------TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred ------------------------------------------------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 24577888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17467 240 KLFMQIAAELMEKLAE 255 (730)
Q Consensus 240 eLFe~Li~~l~e~~~~ 255 (730)
++|++|.+.+.+....
T Consensus 160 ~l~~~l~~~i~~~~~~ 175 (206)
T 2bcg_Y 160 DAFLTMARQIKESMSQ 175 (206)
T ss_dssp HHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998765433
No 12
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=2.9e-27 Score=230.55 Aligned_cols=172 Identities=38% Similarity=0.735 Sum_probs=152.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
++++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||.+++..++..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 56788999999999999999999999999988888999988988899999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~nK~Dl~~----- 127 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYS-------------------------------WDNAQVLLVGNKCDMED----- 127 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CSSCEEEEEEECTTCTT-----
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECcccCc-----
Confidence 999999999999999999999986643 14677888888888742
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.+..++++++++.+++++++|||++|.||+++|
T Consensus 128 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 128 ---------------------------------------------ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp ---------------------------------------------SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 24577889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 243 MQIAAELMEKLAE 255 (730)
Q Consensus 243 e~Li~~l~e~~~~ 255 (730)
++|++.+.++..+
T Consensus 163 ~~l~~~i~~~~~~ 175 (203)
T 1zbd_A 163 ERLVDVICEKMSE 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999988765433
No 13
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=2e-27 Score=224.65 Aligned_cols=167 Identities=40% Similarity=0.813 Sum_probs=149.3
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+.+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++++...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 35678999999999999999999999999988888999988888899999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+++.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~piilv~nK~Dl~~----- 134 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLT-------------------------------NPNTVIILIGNKADLEA----- 134 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG-----
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccccc-----
Confidence 999999999999999999999987643 24678888888888852
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.+..++++++++.+++++++|||++|.||+++|
T Consensus 135 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 135 ---------------------------------------------QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 24567789999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy17467 243 MQIAAELM 250 (730)
Q Consensus 243 e~Li~~l~ 250 (730)
+++++.+.
T Consensus 170 ~~l~~~i~ 177 (179)
T 1z0f_A 170 LEAAKKIY 177 (179)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99998774
No 14
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=1e-27 Score=225.16 Aligned_cols=166 Identities=34% Similarity=0.664 Sum_probs=141.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
+++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 56789999999999999999999999999888889999888888899999999999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.+|+.+..|+..+..... ++.|+++|+||+|+.+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~piilv~nK~Dl~~------ 125 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLG-------------------------------NEICLCIVGNKIDLEK------ 125 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHG-------------------------------GGSEEEEEEECGGGGG------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-------------------------------CCCeEEEEEECccccc------
Confidence 999999999999999999999866532 3567777888888752
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+.++.++++++++..++++++|||++|.||+++|+
T Consensus 126 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 126 --------------------------------------------ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp --------------------------------------------GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred --------------------------------------------ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 245778899999999999999999999999999999
Q ss_pred HHHHHHH
Q psy17467 244 QIAAELM 250 (730)
Q Consensus 244 ~Li~~l~ 250 (730)
++++.+.
T Consensus 162 ~l~~~~~ 168 (170)
T 1z08_A 162 DLCKRMI 168 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998774
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=2.3e-27 Score=229.12 Aligned_cols=169 Identities=40% Similarity=0.742 Sum_probs=150.7
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
..++.+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||+|++++..++..+++++|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 45678999999999999999999999999988888999988888888889989999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~nK~Dl~~----- 141 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYS-------------------------------WDNAQVILVGNKCDLED----- 141 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG-----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECccccc-----
Confidence 999999999999999999999987643 14678888888888852
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.+..++++++++.+++++++|||++|.||+++|
T Consensus 142 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 176 (189)
T 2gf9_A 142 ---------------------------------------------ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176 (189)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred ---------------------------------------------ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 24567788999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 243 MQIAAELMEK 252 (730)
Q Consensus 243 e~Li~~l~e~ 252 (730)
++|++.+.++
T Consensus 177 ~~l~~~i~~~ 186 (189)
T 2gf9_A 177 ERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 16
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=2.7e-27 Score=221.41 Aligned_cols=165 Identities=41% Similarity=0.728 Sum_probs=146.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
....+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++++...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34579999999999999999999999999888889999888888999999899999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~iilv~nK~Dl~~------ 125 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-------------------------------SPNIVIALSGNKADLAN------ 125 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGG------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccCcc------
Confidence 99999999999999999999887643 15677888888888852
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+.++.+++++++...++++++|||++|.||+++|+
T Consensus 126 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (170)
T 1r2q_A 126 --------------------------------------------KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161 (170)
T ss_dssp --------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred --------------------------------------------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 245677889999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 244 QIAAEL 249 (730)
Q Consensus 244 ~Li~~l 249 (730)
+|.+.+
T Consensus 162 ~i~~~~ 167 (170)
T 1r2q_A 162 AIAKKL 167 (170)
T ss_dssp HHHHTS
T ss_pred HHHHHH
Confidence 998754
No 17
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=233.30 Aligned_cols=173 Identities=42% Similarity=0.766 Sum_probs=141.7
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
++++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.||||+|++++..++..+++++|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 45678899999999999999999999999998888899998898899999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++|+|||++++.+|+.+..|+..+..... ++.|+++|+||+|+.+
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~piilv~nK~Dl~~---- 144 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLAS-------------------------------PNIVVILCGNKKDLDP---- 144 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTC-------------------------------TTCEEEEEEECGGGGG----
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcC-------------------------------CCCcEEEEEECCCccc----
Confidence 99999999999999999999998876431 4677888888888742
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.+.++.+++.++++..++.|++|||++|.||+++
T Consensus 145 ----------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 145 ----------------------------------------------EREVTFLEASRFAQENELMFLETSALTGENVEEA 178 (200)
T ss_dssp ----------------------------------------------GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred ----------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 2456778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy17467 242 FMQIAAELMEKLAE 255 (730)
Q Consensus 242 Fe~Li~~l~e~~~~ 255 (730)
|++|++.+.++...
T Consensus 179 ~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 179 FLKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998765443
No 18
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=1.5e-27 Score=223.55 Aligned_cols=164 Identities=45% Similarity=0.816 Sum_probs=139.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++...+..+++++|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 56999999999999999999999999988888999988888889999888999999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.+|+.+..|+..+..... ++.|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilv~nK~Dl~--------- 121 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHAN-------------------------------DEAQLLLVGNKSDME--------- 121 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECTTCT---------
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-------------------------------CCCcEEEEEECccCC---------
Confidence 9999999999999999999876532 456777777777762
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
.+.+..++++++++.+++++++|||++|.||+++|+.+
T Consensus 122 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 122 ------------------------------------------TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp ------------------------------------------TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred ------------------------------------------cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 24567788999999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 246 AAELME 251 (730)
Q Consensus 246 i~~l~e 251 (730)
.+.+.+
T Consensus 160 ~~~~~~ 165 (170)
T 1g16_A 160 AKLIQE 165 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998854
No 19
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=232.33 Aligned_cols=168 Identities=52% Similarity=0.887 Sum_probs=141.6
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
++++.+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+++|||+|++++..++..+++++|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 45778999999999999999999999999988888999988888999999988999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~NK~Dl~~----- 148 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYA-------------------------------GSNIVQLLIGNKSDLSE----- 148 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG-----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECCcccc-----
Confidence 999999999999999999999987643 24677888888888852
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKL 241 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeL 241 (730)
.+.++.++++++++..++ .+++|||++|.||+++
T Consensus 149 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 149 ---------------------------------------------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence 246778899999999999 9999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 242 FMQIAAELME 251 (730)
Q Consensus 242 Fe~Li~~l~e 251 (730)
|++|++.+.+
T Consensus 184 ~~~l~~~i~~ 193 (201)
T 2hup_A 184 FLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 20
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=3.9e-27 Score=223.10 Aligned_cols=173 Identities=34% Similarity=0.633 Sum_probs=146.7
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA 80 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A 80 (730)
|..++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++
T Consensus 1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (177)
T 1wms_A 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS 80 (177)
T ss_dssp -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred CCCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence 67788899999999999999999999999999888889999889889999999999999999999999999999999999
Q ss_pred cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
|++|+|||++++.+++.+..|+..+..... .....+.|+++|+||+|+.
T Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---------------------------~~~~~~~p~i~v~nK~Dl~---- 129 (177)
T 1wms_A 81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYAD---------------------------VKEPESFPFVILGNKIDIS---- 129 (177)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHT---------------------------CSCTTTSCEEEEEECTTCS----
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHcc---------------------------ccccCCCcEEEEEECCccc----
Confidence 999999999999999999999999876542 0112456777777777763
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCChH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNVE 239 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GVe 239 (730)
.+.+..++++++++ ..++++++|||++|.||+
T Consensus 130 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 130 -----------------------------------------------ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp -----------------------------------------------SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred -----------------------------------------------ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 34677888999988 567899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 240 KLFMQIAAELME 251 (730)
Q Consensus 240 eLFe~Li~~l~e 251 (730)
++|+++++.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 21
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=5.3e-27 Score=224.16 Aligned_cols=173 Identities=32% Similarity=0.628 Sum_probs=151.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEE-EEEEEeCCe---------EEEEEEEeCCCchhhhhh
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFM-IKTVEINNE---------RIKLQIWDTAGQERFRSI 72 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~-~~~i~vdg~---------~v~LqLwDTpG~e~~~sl 72 (730)
+++..+||+|+|++|||||||+++|+++.+...+.++++.++. ...+.+++. .+.+.+|||||++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 5678899999999999999999999999998888899998887 667777765 789999999999999999
Q ss_pred hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467 73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK 152 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK 152 (730)
+..+++++|++|+|||++++.+++.+..|+..+..... .++.|+++|+||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~nK 136 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY------------------------------SENPDIVLCGNK 136 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS------------------------------SSSCCEEEEEEC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEEEC
Confidence 99999999999999999999999999999999876531 256788888888
Q ss_pred CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467 153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA 232 (730)
Q Consensus 153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA 232 (730)
+|+.+ .+.+..+++++++...++++++|||
T Consensus 137 ~Dl~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 137 SDLED--------------------------------------------------QRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp TTCGG--------------------------------------------------GCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred ccccc--------------------------------------------------ccccCHHHHHHHHHHcCCCEEEEEC
Confidence 88852 2456778899999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHH
Q psy17467 233 KASDNVEKLFMQIAAELMEKLAE 255 (730)
Q Consensus 233 ktG~GVeeLFe~Li~~l~e~~~~ 255 (730)
++|.||+++|+.|.+.+.++..+
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998765443
No 22
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=5e-27 Score=220.05 Aligned_cols=165 Identities=41% Similarity=0.712 Sum_probs=148.3
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
++..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||.+++...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999999888889999888888999999999999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.+++.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------------------~~~~~iilv~nK~Dl~~------ 125 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHG-------------------------------PPSIVVAIAGNKCDLTD------ 125 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTSEEEEEEECTTCGG------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-------------------------------CCCCcEEEEEECCcccc------
Confidence 99999999999999999999987643 25678888889998853
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+.+..++++.+++..++++++|||++|.||+++|+
T Consensus 126 --------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 126 --------------------------------------------VREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp --------------------------------------------GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred --------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 145677889999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 244 QIAAEL 249 (730)
Q Consensus 244 ~Li~~l 249 (730)
.|.+.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998765
No 23
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=2.5e-27 Score=221.70 Aligned_cols=164 Identities=36% Similarity=0.675 Sum_probs=147.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999998888899998998999999998999999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~------- 123 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--------------------------------GDIPTALVQNKIDLLD------- 123 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--------------------------------CSCCEEEEEECGGGGG-------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECcccCc-------
Confidence 9999999999999999999886643 4567888888888752
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+.+..++++++++..++++++|||++|.||+++|++
T Consensus 124 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 124 -------------------------------------------DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp -------------------------------------------GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred -------------------------------------------ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 2456778899999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 245 IAAELM 250 (730)
Q Consensus 245 Li~~l~ 250 (730)
|.+.+.
T Consensus 161 l~~~~~ 166 (168)
T 1z2a_A 161 LAEKHL 166 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998774
No 24
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.4e-27 Score=224.11 Aligned_cols=170 Identities=46% Similarity=0.795 Sum_probs=141.4
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA 80 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A 80 (730)
+.++..+||+++|++|||||||+++|+++.+. ..+.++++.++....+.+++..+.+.+|||||++++..++..+++++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 35677899999999999999999999999885 46778999888888888999999999999999999999999999999
Q ss_pred cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilv~nK~Dl~~--- 130 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQ-------------------------------HDVALMLLGNKVDSAH--- 130 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECCSTTS---
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-------------------------------CCCcEEEEEECcccCc---
Confidence 999999999999999999999999876431 4677888888888752
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee 240 (730)
.+.+..++++++++..++++++|||++|.||++
T Consensus 131 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 131 -----------------------------------------------ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp -----------------------------------------------CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred -----------------------------------------------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 245777889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 241 LFMQIAAELMEK 252 (730)
Q Consensus 241 LFe~Li~~l~e~ 252 (730)
+|+++.+.+.++
T Consensus 164 l~~~l~~~~~~~ 175 (180)
T 2g6b_A 164 AFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999888543
No 25
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=2.4e-27 Score=235.97 Aligned_cols=177 Identities=29% Similarity=0.476 Sum_probs=148.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+...+.||++.++ ...+.+++..+.++||||+|++++..++..+++++|++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 3569999999999999999999999999998889998665 567778888899999999999999999999999999999
Q ss_pred EEeecCCCCchhh-hHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 85 LVYDISCQPTFDC-LTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 85 LVyDvtd~eSfe~-L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
+|||++++.||+. +..|+..+.... ++.|+++||||+|+.++.....
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~ 151 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC--------------------------------PSTRVLLIGCKTDLRTDLSTLM 151 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC--------------------------------TTSEEEEEEECGGGGGCHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhhccchhhhh
Confidence 9999999999998 688999987643 5788999999999975422110
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC-hHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN-VEKL 241 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G-VeeL 241 (730)
...+...+.++.+++.++++.+++ .|+||||++|.| |+++
T Consensus 152 --------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~l 193 (214)
T 3q3j_B 152 --------------------------------------ELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193 (214)
T ss_dssp --------------------------------------HHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHH
T ss_pred --------------------------------------hhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHH
Confidence 001113467899999999999999 999999999998 9999
Q ss_pred HHHHHHHHHHH
Q psy17467 242 FMQIAAELMEK 252 (730)
Q Consensus 242 Fe~Li~~l~e~ 252 (730)
|+.+++.+.+.
T Consensus 194 f~~l~~~~~~~ 204 (214)
T 3q3j_B 194 FRTASMLCLNK 204 (214)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999988544
No 26
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.95 E-value=1.8e-27 Score=227.14 Aligned_cols=167 Identities=27% Similarity=0.421 Sum_probs=146.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+++|||||++++..++..+++++|++|
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3469999999999999999999999999888889998666 778889999999999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+.++.... ..++.|+++|+||+|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~nK~Dl~~------- 125 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMV------------------------------GKVQIPIMLVGNKKDLHM------- 125 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----------------------------------CCEEEEEECTTCTT-------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccchh-------
Confidence 9999999999999999999986643 124678888888888742
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+.++.++++++++.++++|++|||++|.||+++|+.
T Consensus 126 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 126 -------------------------------------------ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp -------------------------------------------TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred -------------------------------------------cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 3568889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy17467 245 IAAELMEK 252 (730)
Q Consensus 245 Li~~l~e~ 252 (730)
+++.+.+.
T Consensus 163 l~~~~~~~ 170 (181)
T 3t5g_A 163 IILEAEKM 170 (181)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99988543
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.95 E-value=5.2e-27 Score=224.30 Aligned_cols=167 Identities=29% Similarity=0.509 Sum_probs=148.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
....+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+++|||+|++++..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34679999999999999999999999999888889988666 77888899999999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.||+.+..|+..+.... ...+.|+++|+||+|+.+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~nK~Dl~~------ 137 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVK------------------------------DRESFPMILVANKVDLMH------ 137 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH------------------------------TSSCCCEEEEEECTTCST------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCcEEEEEECCCchh------
Confidence 99999999999999999999986643 125678888888888752
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecC-CCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAK-ASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAk-tG~GVeeLF 242 (730)
.+.++.++++++++.++++|++|||+ +|.||+++|
T Consensus 138 --------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 138 --------------------------------------------LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp --------------------------------------------TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred --------------------------------------------ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHH
Confidence 35688899999999999999999999 999999999
Q ss_pred HHHHHHHHH
Q psy17467 243 MQIAAELME 251 (730)
Q Consensus 243 e~Li~~l~e 251 (730)
+.|++.+.+
T Consensus 174 ~~l~~~i~~ 182 (183)
T 3kkq_A 174 HDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988753
No 28
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.1e-28 Score=235.17 Aligned_cols=169 Identities=38% Similarity=0.755 Sum_probs=151.7
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
++++.+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 46788999999999999999999999999988888899888988899888888999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~nK~Dl~~----- 142 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYS-------------------------------WDNAQVILVGNKCDMEE----- 142 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG-----
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECCCCcc-----
Confidence 999999999999999999999987643 14677888888888852
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.+..++++.+++.+++++++|||++|.||+++|
T Consensus 143 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (191)
T 3dz8_A 143 ---------------------------------------------ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177 (191)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 24677889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 243 MQIAAELMEK 252 (730)
Q Consensus 243 e~Li~~l~e~ 252 (730)
+.|++.+.++
T Consensus 178 ~~l~~~i~~~ 187 (191)
T 3dz8_A 178 ERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 29
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=2.5e-27 Score=222.80 Aligned_cols=165 Identities=23% Similarity=0.342 Sum_probs=130.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-hhHhhhccccEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS-ITQSYYRSAHALIL 85 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-l~~~~~r~ADaIIL 85 (730)
.+||+++|++|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||+|++++.. ++..+++++|++|+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998887777667777788888999999999999999999998876 77888999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++++|+.+..|+.++..... ..+.|+++|+||+|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~~p~ilv~nK~Dl~~-------- 123 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRP------------------------------HHDLPVILVGNKSDLAR-------- 123 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHST------------------------------TSCCCEEEEEECTTCGG--------
T ss_pred EEECCChHHHHHHHHHHHHHHhccc------------------------------CCCCCEEEEeeCcchhh--------
Confidence 9999999999999999999876531 24678888888888852
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
.+.++.++++++++..+++|++|||++|.||+++|+.+
T Consensus 124 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 124 ------------------------------------------SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp ------------------------------------------GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred ------------------------------------------cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 25678899999999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 246 AAELME 251 (730)
Q Consensus 246 i~~l~e 251 (730)
++.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 30
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=223.13 Aligned_cols=167 Identities=27% Similarity=0.381 Sum_probs=133.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--hhhhhHhhhccccE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--FRSITQSYYRSAHA 82 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--~~sl~~~~~r~ADa 82 (730)
+..+||+|+|++|||||||+++|+++.+...+ ++.|.++....+.+++..+.+.+|||+|++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35689999999999999999999998876654 5677788888889999999999999999987 56677888999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... ..++.|+++|+||+|+.+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~------------------------------~~~~~piilv~NK~Dl~~----- 125 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTH------------------------------QADHVPIILVGNKADLAR----- 125 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----------------------------------CCEEEEEECTTCTT-----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhh------------------------------ccCCCCEEEEEEChhhcc-----
Confidence 999999999999999999998876532 124678888888888852
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.++.++++.++..+++++++|||++|.||+++|
T Consensus 126 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 126 ---------------------------------------------CREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp ---------------------------------------------TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 24577788899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 243 MQIAAELMEK 252 (730)
Q Consensus 243 e~Li~~l~e~ 252 (730)
++|++.+.+.
T Consensus 161 ~~l~~~~~~~ 170 (175)
T 2nzj_A 161 EGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988554
No 31
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=234.06 Aligned_cols=167 Identities=23% Similarity=0.329 Sum_probs=142.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-hhHhhhccccE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS-ITQSYYRSAHA 82 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-l~~~~~r~ADa 82 (730)
.+..+||+|+|++|||||||+++|++..+...+.|+.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++++|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 45679999999999999999999986655545556777778888889999999999999999987765 78889999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.||+.+..|+.++.... ...+.|+++||||+|+.+
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~----- 144 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGR------------------------------PHHDLPVILVGNKSDLAR----- 144 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS------------------------------TTSCCCEEEEEECTTCTT-----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEeechhccc-----
Confidence 999999999999999999999886543 114678888888888752
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.++.++++++++.+++.|+||||++|.||+++|
T Consensus 145 ---------------------------------------------~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 145 ---------------------------------------------SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179 (195)
T ss_dssp ---------------------------------------------TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred ---------------------------------------------cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence 25678889999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy17467 243 MQIAAELM 250 (730)
Q Consensus 243 e~Li~~l~ 250 (730)
+.+++.+.
T Consensus 180 ~~l~~~i~ 187 (195)
T 3cbq_A 180 EGAVRQIR 187 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 32
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.95 E-value=3.8e-27 Score=228.51 Aligned_cols=168 Identities=29% Similarity=0.555 Sum_probs=145.7
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
+.....+||+++|++|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+++|||+|++++..++..+++++|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 4556789999999999999999999999999888889998655 457788999999999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 82 ALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
++|+|||++++.+|+.+ ..|+..+.... ++.|+++||||+|+.+.
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~~-- 142 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI--------------------------------DTAKTVLVGLKVDLRKD-- 142 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTSEEEEEEECGGGCCT--
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhhccC--
Confidence 99999999999999997 66888876542 46788888899888531
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-EEEEecCCCCChH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-YLETSAKASDNVE 239 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-fvEtSAktG~GVe 239 (730)
..+.+..++++++++.+++. |++|||++|.||+
T Consensus 143 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 143 ----------------------------------------------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp ----------------------------------------------TTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred ----------------------------------------------CCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 13568889999999999998 9999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 240 KLFMQIAAELM 250 (730)
Q Consensus 240 eLFe~Li~~l~ 250 (730)
++|+.+++.+.
T Consensus 177 ~l~~~l~~~i~ 187 (194)
T 3reg_A 177 EVFEKSVDCIF 187 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 33
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.95 E-value=6.2e-27 Score=221.58 Aligned_cols=169 Identities=29% Similarity=0.482 Sum_probs=147.0
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
.....+||+|+|++|||||||+++|+++.+...+.++++..+. ..+.+++..+.+.+|||||++++..++..+++++|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 4456799999999999999999999999998888888886654 778889988999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.+.. ...+.|+++|+||+|+.+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~----- 128 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVK------------------------------DRDDFPVVLVGNKADLES----- 128 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH------------------------------TSSCCCEEEEEECGGGGG-----
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccccc-----
Confidence 999999999999999999999885543 124678888888888752
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.++.++++.++...++.+++|||++|.||+++|
T Consensus 129 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 129 ---------------------------------------------QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 24577888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 243 MQIAAELMEK 252 (730)
Q Consensus 243 e~Li~~l~e~ 252 (730)
++|.+.+.+.
T Consensus 164 ~~l~~~~~~~ 173 (181)
T 2fn4_A 164 EQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988543
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=5.6e-27 Score=222.80 Aligned_cols=166 Identities=38% Similarity=0.712 Sum_probs=148.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
....+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++...+..+++++|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999999888889999889888999999899999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~p~i~v~nK~Dl~~------ 131 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQG-------------------------------NPNMVMALAGNKSDLLD------ 131 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCTT------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECCcccc------
Confidence 99999999999999999999987653 14677888888888842
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+.+..++++++++..++++++|||++|.||+++|+
T Consensus 132 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 132 --------------------------------------------ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp --------------------------------------------TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred --------------------------------------------cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 245678899999999999999999999999999999
Q ss_pred HHHHHHH
Q psy17467 244 QIAAELM 250 (730)
Q Consensus 244 ~Li~~l~ 250 (730)
+|++.+.
T Consensus 168 ~l~~~~~ 174 (181)
T 2efe_B 168 EIARRLP 174 (181)
T ss_dssp HHHHTCC
T ss_pred HHHHHHH
Confidence 9988764
No 35
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=224.66 Aligned_cols=170 Identities=44% Similarity=0.769 Sum_probs=151.3
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||+|.+++..++..+++++|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 56778999999999999999999999999988888999988988899999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~-------------------------------~~~~piilv~nK~Dl~~----- 144 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHA-------------------------------EATIVVMLVGNKSDLSQ----- 144 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTS-------------------------------CTTCEEEEEEECGGGGG-----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------CCCCeEEEEEECCCccc-----
Confidence 999999999999999999998886432 25678888888888852
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.+..++++.++...++.+++|||++|.||+++|
T Consensus 145 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 145 ---------------------------------------------AREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 14567788999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 243 MQIAAELMEKL 253 (730)
Q Consensus 243 e~Li~~l~e~~ 253 (730)
++|++.+.++.
T Consensus 180 ~~l~~~i~~~~ 190 (193)
T 2oil_A 180 ETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 36
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=6.2e-27 Score=221.20 Aligned_cols=164 Identities=41% Similarity=0.690 Sum_probs=146.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++++...+..+++++|++|
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999999998888899998999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilv~nK~Dl~~------- 133 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERG-------------------------------SDVIIMLVGNKTDLSD------- 133 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT-------------------------------TSSEEEEEEECGGGGG-------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-------------------------------CCCcEEEEEECCcccc-------
Confidence 99999999999999999999876532 4577788888888752
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+.+..++++.+++..++++++|||++|.||+++|+.
T Consensus 134 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 134 -------------------------------------------KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp -------------------------------------------GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred -------------------------------------------cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 2456778899999999999999999999999999999
Q ss_pred HHHHH
Q psy17467 245 IAAEL 249 (730)
Q Consensus 245 Li~~l 249 (730)
|.+.+
T Consensus 171 l~~~~ 175 (179)
T 2y8e_A 171 VAAAL 175 (179)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98765
No 37
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=4.1e-27 Score=223.04 Aligned_cols=174 Identities=32% Similarity=0.588 Sum_probs=136.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
.++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.++ +..+.+.+|||||++.+...+..+++++|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45678999999999999999999999999988888999888888888887 66789999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++|+|||++++.+|+.+..|+..+..... .....+.|+++|+||+|+.+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---------------------------~~~~~~~p~ilv~nK~Dl~~---- 132 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHAN---------------------------VNSPETFPFVILGNKIDAEE---- 132 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHC---------------------------CSCTTTCCEEEEEECTTSCG----
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhc---------------------------ccCcCCCcEEEEEECCcccc----
Confidence 99999999999999999999999876541 11225678888899999853
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCChHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GVee 240 (730)
..+.+..++++++++ ..++++++|||++|.||++
T Consensus 133 ---------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (182)
T 1ky3_A 133 ---------------------------------------------SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT 167 (182)
T ss_dssp ---------------------------------------------GGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred ---------------------------------------------ccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHH
Confidence 124567788899988 5678999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 241 LFMQIAAELMEK 252 (730)
Q Consensus 241 LFe~Li~~l~e~ 252 (730)
+|++|.+.+.++
T Consensus 168 l~~~l~~~~~~~ 179 (182)
T 1ky3_A 168 AFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 38
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=4.9e-27 Score=226.32 Aligned_cols=176 Identities=28% Similarity=0.512 Sum_probs=146.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
.+..+||+|+|++|||||||+++|+++.+...+.|+++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999999888889988555 56678888889999999999999999999999999999
Q ss_pred EEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 84 ILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 84 ILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
|+|||++++.||+.+ ..|+..+.... ++.|+++||||+|+.++....
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~ 130 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC--------------------------------PNTKMLLVGCKSDLRTDVSTL 130 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTCEEEEEEECGGGGGCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--------------------------------CCCCEEEEEEcchhhcchhhH
Confidence 999999999999998 67988886542 568899999999997532211
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecC-CCCChHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAK-ASDNVEK 240 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAk-tG~GVee 240 (730)
..+ .+...+.++.++++++++.++ ++|++|||+ +|.||++
T Consensus 131 ~~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~ 172 (184)
T 1m7b_A 131 VEL--------------------------------------SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRD 172 (184)
T ss_dssp HHH--------------------------------------HTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHH
T ss_pred hhh--------------------------------------hhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHH
Confidence 000 011236788899999999988 699999999 6899999
Q ss_pred HHHHHHHHHH
Q psy17467 241 LFMQIAAELM 250 (730)
Q Consensus 241 LFe~Li~~l~ 250 (730)
+|+.+++.++
T Consensus 173 l~~~i~~~~l 182 (184)
T 1m7b_A 173 IFHVATLACV 182 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 39
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=225.99 Aligned_cols=179 Identities=26% Similarity=0.415 Sum_probs=141.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
....+||+|+|++|||||||+++|+++.+...+.||++. .....+.+++..+.+++|||+|++++..++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD-NFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSE-EEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc-eeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 456799999999999999999999999988888888874 4466788899889999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 84 ILVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
|+|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+.....
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~~~~~~ 143 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--------------------------------PKAPIILVGTQSDLREDVKVL 143 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------SSSCEEEEEECGGGGGCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECHhhhhchhhh
Confidence 9999999999999997 6998886543 478899999999997532211
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKL 241 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeL 241 (730)
..+ + +...+.++.+++..+++.+++ +|++|||++|.||+++
T Consensus 144 ~~~------------------------------------~--~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 185 (201)
T 2q3h_A 144 IEL------------------------------------D--KCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV 185 (201)
T ss_dssp HHH------------------------------------H--TTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred hhh------------------------------------c--ccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHH
Confidence 000 0 012367888999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 242 FMQIAAELMEKL 253 (730)
Q Consensus 242 Fe~Li~~l~e~~ 253 (730)
|+++++.+.+..
T Consensus 186 ~~~l~~~~~~~~ 197 (201)
T 2q3h_A 186 FDAAIVAGIQYS 197 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 999999887654
No 40
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=5.8e-27 Score=227.46 Aligned_cols=166 Identities=21% Similarity=0.387 Sum_probs=139.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+++|||+|++++..+ ..+++++|++|
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 4579999999999999999999999999888889998555 566778999999999999999988775 67999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.||+.+..|+..+...... ..++.|+++||||+|+.+
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~----------------------------~~~~~piilv~nK~Dl~~------- 141 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKE----------------------------TQRSIPALLLGNKLDMAQ------- 141 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHH----------------------------HCCCCCEEEEEECGGGGG-------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhc----------------------------cCCCCCEEEEEECcchhh-------
Confidence 999999999999999999998765310 114677888888888742
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec-CCCCChHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA-KASDNVEKLFM 243 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA-ktG~GVeeLFe 243 (730)
.+.++.++++++++.+++.|++||| ++|.||+++|+
T Consensus 142 -------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~ 178 (187)
T 3c5c_A 142 -------------------------------------------YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFH 178 (187)
T ss_dssp -------------------------------------------GCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHH
T ss_pred -------------------------------------------cCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHH
Confidence 2567889999999999999999999 89999999999
Q ss_pred HHHHHHH
Q psy17467 244 QIAAELM 250 (730)
Q Consensus 244 ~Li~~l~ 250 (730)
.|++.+.
T Consensus 179 ~l~~~i~ 185 (187)
T 3c5c_A 179 EAVREAR 185 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998774
No 41
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=1.2e-26 Score=224.19 Aligned_cols=167 Identities=44% Similarity=0.812 Sum_probs=145.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh-hhhHhhhccccE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR-SITQSYYRSAHA 82 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~-sl~~~~~r~ADa 82 (730)
.+..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||+|++++. .++..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3457999999999999999999999999988888999989989999999989999999999999998 889999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.||+.+..|+.++.... ...+.|+++|+||+|+.+
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~----- 141 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHL------------------------------LANDIPRILVGNKCDLRS----- 141 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC------------------------------CCSCCCEEEEEECTTCGG-----
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccccc-----
Confidence 999999999999999999999987653 125678888888888852
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC---CChH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS---DNVE 239 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG---~GVe 239 (730)
.+.++.++++++++..+++|++|||++| .||+
T Consensus 142 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 142 ---------------------------------------------AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred ---------------------------------------------cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 2457788899999999999999999999 9999
Q ss_pred HHHHHHHHHHH
Q psy17467 240 KLFMQIAAELM 250 (730)
Q Consensus 240 eLFe~Li~~l~ 250 (730)
++|++|++.+.
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 42
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.7e-26 Score=215.99 Aligned_cols=165 Identities=38% Similarity=0.695 Sum_probs=147.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++|+++.+...+.|+.+.++....+.+++..+.+.+|||||++++...+..+++++|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 58999999999999999999999999888889999888888999999999999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.+++.+..|+..+.... .++.|+++|+||+|+.+..
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~piilv~nK~Dl~~~~------- 124 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQA-------------------------------SKDIIIALVGNKIDXLQEG------- 124 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGGSS-------
T ss_pred EecCChHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECCCccccc-------
Confidence 99999999999999999987643 2567888889999986311
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
..+.+..++++++++..++++++|||++|.||+++|+++.
T Consensus 125 ----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1ek0_A 125 ----------------------------------------GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164 (170)
T ss_dssp ----------------------------------------CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ----------------------------------------cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 1256788899999999999999999999999999999998
Q ss_pred HHH
Q psy17467 247 AEL 249 (730)
Q Consensus 247 ~~l 249 (730)
+.+
T Consensus 165 ~~i 167 (170)
T 1ek0_A 165 EKI 167 (170)
T ss_dssp TTS
T ss_pred HHH
Confidence 654
No 43
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=1.9e-27 Score=234.80 Aligned_cols=212 Identities=24% Similarity=0.355 Sum_probs=148.2
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhhhhhHhhhcc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFRSITQSYYRS 79 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~sl~~~~~r~ 79 (730)
|+..+..+||+|+|++|||||||+++|+++.+...+.++.+.+......... +..+.+.+|||+|++.+..++..++++
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG 84 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence 4566778999999999999999999999999888888888877766666554 444889999999999999999999999
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e 159 (730)
+|++|+|||++++.+|+++..|+..+..... .+.|+++|+||+|+.+
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------~~~piilv~nK~Dl~~-- 131 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLARWVKEFQAVVG-------------------------------NEAPIVVCANKIDIKN-- 131 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-------------------------------SSSCEEEEEECTTCC---
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-------------------------------CCCCEEEEEECCCCcc--
Confidence 9999999999999999999999999876542 3467888888888753
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChH
Q psy17467 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVE 239 (730)
Q Consensus 160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVe 239 (730)
.+.+..+++..++...++++++|||++|.||+
T Consensus 132 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 132 ------------------------------------------------RQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp ---------------------------------------------------CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred ------------------------------------------------ccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 23567788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCC
Q psy17467 240 KLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNI 307 (730)
Q Consensus 240 eLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~ 307 (730)
++|++|.+.+.+..........+.....+ ....+|+...+ ...|++|....||+
T Consensus 164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~---~~~y~~q~~~~pp~ 217 (218)
T 4djt_A 164 LPFLHLARIFTGRPDLIFVSNVNLEPTEV-----------NYDYHSPEESK---YIDYMEQASKMAPE 217 (218)
T ss_dssp HHHHHHHHHHHCCTTCCBCSCCCCCBCCC-----------CCCCCCC---------------------
T ss_pred HHHHHHHHHHhcccccccccccCcCCCcc-----------ccCccCchhhh---hHHHHHHHhccCCC
Confidence 99999999885443332222222222111 12223332222 45688888777775
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.94 E-value=1.9e-26 Score=215.44 Aligned_cols=162 Identities=32% Similarity=0.573 Sum_probs=142.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999999888888888544 56777888889999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.+|+.+..|+..+.... ..++.|+++|+||+|+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~--------- 122 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVK------------------------------DTEDVPMILVGNKCDLED--------- 122 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH------------------------------CCSCCCEEEEEECTTCGG---------
T ss_pred EECCCHHHHHHHHHHHHHHHHhh------------------------------CcCCCcEEEEEECccccc---------
Confidence 99999999999999999887643 125678888899998853
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeLFe~L 245 (730)
.+.++.++++.+++.+ ++++++|||++|.||+++|++|
T Consensus 123 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 123 -----------------------------------------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp -----------------------------------------GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred -----------------------------------------cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 2456778899999988 7899999999999999999999
Q ss_pred HHHH
Q psy17467 246 AAEL 249 (730)
Q Consensus 246 i~~l 249 (730)
.+.+
T Consensus 162 ~~~i 165 (167)
T 1c1y_A 162 VRQI 165 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 45
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.94 E-value=2.3e-26 Score=218.87 Aligned_cols=167 Identities=19% Similarity=0.295 Sum_probs=140.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+++|++|||||||+++|+++.+.. +.||++ +.+...+.+++..+.+++|||+|+++ ..+++++|++|+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 46999999999999999999999999887 778887 44577888899999999999999876 467889999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.||+.+..|++.+..... ...++.|+++||||+|+.+.
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~----------------------------~~~~~~piilv~nK~Dl~~~------- 123 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRG----------------------------EGRGGLALALVGTQDRISAS------- 123 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHC----------------------------SSSCCCEEEEEEECTTCBTT-------
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHh----------------------------cCCCCCCEEEEEECcccccc-------
Confidence 9999999999999998887765431 01256788888999988421
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeLFe~ 244 (730)
..+.++.++++++++.. +++|++|||++|.||+++|+.
T Consensus 124 -----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~ 162 (178)
T 2iwr_A 124 -----------------------------------------SPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQE 162 (178)
T ss_dssp -----------------------------------------BCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHH
T ss_pred -----------------------------------------ccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHH
Confidence 23578889999999886 689999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 245 IAAELMEKLAE 255 (730)
Q Consensus 245 Li~~l~e~~~~ 255 (730)
+++.+.+....
T Consensus 163 l~~~~~~~~~~ 173 (178)
T 2iwr_A 163 VAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99998766544
No 46
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.9e-26 Score=225.62 Aligned_cols=170 Identities=43% Similarity=0.811 Sum_probs=148.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
.+..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45579999999999999999999999999888889999899888999999889999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilv~nK~Dl~------- 138 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHAN-------------------------------DEAQLLLVGNKSDME------- 138 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTT-------------------------------TCSEEEEEEECTTCS-------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-------------------------------CCCCEEEEEECCCCc-------
Confidence 999999999999999999999876532 356677777777762
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+.+..++++++++.+++++++|||++|.||+++|+
T Consensus 139 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 139 --------------------------------------------TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp --------------------------------------------SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred --------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 345677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 244 QIAAELMEKLAE 255 (730)
Q Consensus 244 ~Li~~l~e~~~~ 255 (730)
+|.+.+.+....
T Consensus 175 ~l~~~~~~~~~~ 186 (213)
T 3cph_A 175 TLAKLIQEKIDS 186 (213)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999988765543
No 47
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=2.4e-26 Score=218.67 Aligned_cols=170 Identities=30% Similarity=0.521 Sum_probs=146.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34569999999999999999999999998888888887444 56678888889999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.+|+.+..|+..+..... ..+.|+++|+||+|+.+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~nK~Dl~~------ 137 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKE------------------------------DENVPFLLVGNKSDLED------ 137 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHC------------------------------CTTCCEEEEEECGGGGG------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC------------------------------CCCCCEEEEEECccccc------
Confidence 999999999999999999999876541 24678888888888752
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+.+..++++++++.+++++++|||++|.||+++|+
T Consensus 138 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 138 --------------------------------------------KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp --------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred --------------------------------------------cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 245677889999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 244 QIAAELMEKLA 254 (730)
Q Consensus 244 ~Li~~l~e~~~ 254 (730)
+|++.+.+++.
T Consensus 174 ~l~~~i~~~~~ 184 (187)
T 2a9k_A 174 DLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999866543
No 48
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.94 E-value=4e-26 Score=217.94 Aligned_cols=169 Identities=28% Similarity=0.462 Sum_probs=144.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+|+|++|||||||+++|+++.+...+.++.+ +.....+.+++..+.+++|||||++++..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999998888877775 5666788889999999999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.+|+.+..|+..+.... ..++.|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~i~v~nK~Dl~--------- 122 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVK------------------------------DSEDVPMVLVGNKCDLP--------- 122 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHT------------------------------TCSCCCEEEEEECTTSS---------
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCcEEEEEECccCc---------
Confidence 999999999999999999987643 12466777777777764
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
.+.+..++++.+++.+++++++|||++|.||+++|+++
T Consensus 123 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 123 ------------------------------------------SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp ------------------------------------------SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred ------------------------------------------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 34577889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 246 AAELMEKLAEK 256 (730)
Q Consensus 246 i~~l~e~~~~~ 256 (730)
++.+.+.....
T Consensus 161 ~~~~~~~~~~~ 171 (189)
T 4dsu_A 161 VREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhc
Confidence 99997765554
No 49
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2e-26 Score=223.91 Aligned_cols=166 Identities=41% Similarity=0.658 Sum_probs=147.6
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
.++..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++++...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 56778999999999999999999999999888888999988888888888888999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piiiv~NK~Dl~~----- 142 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHG-------------------------------PENIVMAIAGNKCDLSD----- 142 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGG-----
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCcEEEEEECccccc-----
Confidence 999999999999999999999987643 14677888888888742
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.++.++++++++..++++++|||++|.||+++|
T Consensus 143 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 143 ---------------------------------------------IREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177 (192)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 24577889999999999999999999999999999
Q ss_pred HHHHHHH
Q psy17467 243 MQIAAEL 249 (730)
Q Consensus 243 e~Li~~l 249 (730)
+.|.+.+
T Consensus 178 ~~l~~~i 184 (192)
T 2fg5_A 178 QGISRQI 184 (192)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 9998766
No 50
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.3e-26 Score=224.40 Aligned_cols=175 Identities=27% Similarity=0.526 Sum_probs=148.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+..+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+++|||+|++++..++..+++++|++|
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4679999999999999999999999999888888887554 567788888899999999999999999999999999999
Q ss_pred EEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 85 LVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 85 LVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
+|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+......
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~ 142 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYA--------------------------------PNVPFLLIGTQIDLRDDPKTLA 142 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--------------------------------TTCCEEEEEECTTSTTCHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhhcccccchh
Confidence 999999999999997 6988886542 4688999999999975432110
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF 242 (730)
.+ .+...+.++.+++.++++.+++ .|++|||++|.||+++|
T Consensus 143 ~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 184 (194)
T 2atx_A 143 RL--------------------------------------NDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184 (194)
T ss_dssp HH--------------------------------------TTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHH
T ss_pred hc--------------------------------------ccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHH
Confidence 00 0113467888999999999998 89999999999999999
Q ss_pred HHHHHHHH
Q psy17467 243 MQIAAELM 250 (730)
Q Consensus 243 e~Li~~l~ 250 (730)
++|++.++
T Consensus 185 ~~l~~~i~ 192 (194)
T 2atx_A 185 DEAIIAIL 192 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 51
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=6.3e-27 Score=230.87 Aligned_cols=173 Identities=35% Similarity=0.663 Sum_probs=149.8
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe----------EEEEEEEeCCCchhhhhh
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE----------RIKLQIWDTAGQERFRSI 72 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~----------~v~LqLwDTpG~e~~~sl 72 (730)
++++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++. .+.+.||||+|++++...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 5678899999999999999999999999998888899998888888888776 789999999999999999
Q ss_pred hHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467 73 TQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK 152 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK 152 (730)
+..+++++|++|+|||++++.+|+.+..|+..+.... ...+.|+++|+||
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~------------------------------~~~~~piilV~NK 150 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA------------------------------YCENPDIVLIGNK 150 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC------------------------------TTTCCEEEEEEEC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------------------------CcCCCCEEEEEEC
Confidence 9999999999999999999999999998987753211 1256788888888
Q ss_pred CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467 153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA 232 (730)
Q Consensus 153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA 232 (730)
+|+.+ .+.++.++++++++.+++++++|||
T Consensus 151 ~Dl~~--------------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 151 ADLPD--------------------------------------------------QREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp TTCGG--------------------------------------------------GCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred Ccccc--------------------------------------------------ccccCHHHHHHHHHHCCCcEEEEEC
Confidence 88852 2456788999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHH
Q psy17467 233 KASDNVEKLFMQIAAELMEKLAE 255 (730)
Q Consensus 233 ktG~GVeeLFe~Li~~l~e~~~~ 255 (730)
++|.||+++|++|++.+.++...
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998765444
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.94 E-value=1.9e-26 Score=214.68 Aligned_cols=163 Identities=31% Similarity=0.555 Sum_probs=140.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999998888878887444 56678889889999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.+|+.+..|+..+..... ..+.|+++|+||+|+.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~nK~Dl~~--------- 123 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKE------------------------------DENVPFLLVGNKSDLED--------- 123 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHC------------------------------CTTSCEEEEEECGGGGG---------
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCcEEEEEECccccc---------
Confidence 999999999999999999876541 24678888888888852
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.++++++++..++++++|||++|.||+++|++++
T Consensus 124 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 124 -----------------------------------------KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp -----------------------------------------GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred -----------------------------------------cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence 245678899999999999999999999999999999999
Q ss_pred HHHH
Q psy17467 247 AELM 250 (730)
Q Consensus 247 ~~l~ 250 (730)
+.+.
T Consensus 163 ~~i~ 166 (168)
T 1u8z_A 163 REIR 166 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 53
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.94 E-value=4e-26 Score=221.76 Aligned_cols=170 Identities=31% Similarity=0.527 Sum_probs=148.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++|
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 3568999999999999999999999998888888887444 567788998899999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+..+.... ...+.|+++|+||+|+.+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~------- 133 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVK------------------------------EDENVPFLLVGNKSDLED------- 133 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHT------------------------------TCSCCCEEEEEECTTCGG-------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEeccCccc-------
Confidence 9999999999999999999987653 124678888889888853
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+.++.++++.+++.+++++++|||++|.||+++|++
T Consensus 134 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 134 -------------------------------------------KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp -------------------------------------------GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred -------------------------------------------cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 2457788999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 245 IAAELMEKLAE 255 (730)
Q Consensus 245 Li~~l~e~~~~ 255 (730)
|++.+.+....
T Consensus 171 l~~~i~~~~~~ 181 (206)
T 2bov_A 171 LMREIRARKME 181 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHcccc
Confidence 99999765443
No 54
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.94 E-value=8.8e-27 Score=218.44 Aligned_cols=164 Identities=24% Similarity=0.391 Sum_probs=120.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++|++..+... .++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997765433 35666444 56778899999999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.+|+.+..|+..+.... ..++.|+++|+||+|+.+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~nK~Dl~~--------- 120 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRAR------------------------------QTDDVPIILVGNKSDLVR--------- 120 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---------------------------------CCCEEEEEECTTCCS---------
T ss_pred EECCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEecccccc---------
Confidence 99999999999999999886532 125678888888888752
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.++.++++.++...++++++|||++|.||+++|++++
T Consensus 121 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 121 -----------------------------------------SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp -----------------------------------------SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred -----------------------------------------ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 256788999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 247 AELMEK 252 (730)
Q Consensus 247 ~~l~e~ 252 (730)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988553
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.94 E-value=1.3e-26 Score=215.59 Aligned_cols=163 Identities=32% Similarity=0.533 Sum_probs=143.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.+|||||++++..++..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999998888888887 44577888899899999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.+++.+..|+..+.... ...+.|+++|+||+|+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~--------- 122 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVK------------------------------RYEKVPVILVGNKVDLES--------- 122 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHT------------------------------TTSCCCEEEEEECGGGGG---------
T ss_pred EeCCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECCcccc---------
Confidence 99999999999999999886643 124678888888888742
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.+..++++++++.+++++++|||++|.||+++|++++
T Consensus 123 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 123 -----------------------------------------EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp -----------------------------------------GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred -----------------------------------------cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 245677889999999999999999999999999999999
Q ss_pred HHHH
Q psy17467 247 AELM 250 (730)
Q Consensus 247 ~~l~ 250 (730)
+.+.
T Consensus 162 ~~~~ 165 (167)
T 1kao_A 162 RQMN 165 (167)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8774
No 56
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=224.33 Aligned_cols=168 Identities=46% Similarity=0.805 Sum_probs=141.8
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+.+..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 45678999999999999999999999999888888999989999999999989999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~-------------------------------~~~piilV~NK~Dl~~----- 145 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYAS-------------------------------EDAELLLVGNKLDCET----- 145 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-------------------------------TTCEEEEEEECGGGGG-----
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-------------------------------CCCcEEEEEECccccc-----
Confidence 9999999999999999999888865431 4677888888888752
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc-CCeEEEEecCCCCChHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKL 241 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l-g~~fvEtSAktG~GVeeL 241 (730)
.+.++.++++++++.+ ++.+++|||++|.||+++
T Consensus 146 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 146 ---------------------------------------------DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 2457778899999885 889999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 242 FMQIAAELME 251 (730)
Q Consensus 242 Fe~Li~~l~e 251 (730)
|++|++.+.+
T Consensus 181 ~~~l~~~i~~ 190 (192)
T 2il1_A 181 FLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=3.4e-26 Score=219.33 Aligned_cols=167 Identities=34% Similarity=0.600 Sum_probs=145.1
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE-------------------------
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER------------------------- 55 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~------------------------- 55 (730)
|+ ++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..
T Consensus 2 m~-~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T 3clv_A 2 ME-KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIIT 80 (208)
T ss_dssp CC-CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC---------------------------
T ss_pred CC-CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccc
Confidence 54 4567999999999999999999999999988888999988888888887765
Q ss_pred ------------EEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCc
Q psy17467 56 ------------IKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123 (730)
Q Consensus 56 ------------v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~d 123 (730)
+.+.||||||++.+..++..+++.+|++|+|||++++.+++.+..|+..+....
T Consensus 81 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-------------- 146 (208)
T 3clv_A 81 NQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-------------- 146 (208)
T ss_dssp ----CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--------------
T ss_pred cccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--------------
Confidence 889999999999999999999999999999999999999999999999986643
Q ss_pred hhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccc
Q psy17467 124 LKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNK 203 (730)
Q Consensus 124 l~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK 203 (730)
+.|+++|+||+|+
T Consensus 147 -------------------~~piilv~NK~D~------------------------------------------------ 159 (208)
T 3clv_A 147 -------------------NYIIILVANKIDK------------------------------------------------ 159 (208)
T ss_dssp -------------------CCEEEEEEECTTC------------------------------------------------
T ss_pred -------------------CCcEEEEEECCCc------------------------------------------------
Confidence 2567777777773
Q ss_pred ccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHHHH
Q psy17467 204 IDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252 (730)
Q Consensus 204 ~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e~ 252 (730)
..+.+..++++++++..++++++|||++|.||+++|++|.+.+.++
T Consensus 160 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 160 ---NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp ---C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ---ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 2356778899999999999999999999999999999999888654
No 58
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=8.8e-27 Score=234.25 Aligned_cols=167 Identities=23% Similarity=0.330 Sum_probs=137.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh-hhhhhHhhhccc
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVF--PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER-FRSITQSYYRSA 80 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f--~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~-~~sl~~~~~r~A 80 (730)
++..+||+|||++|||||||+++|++... ... .+++|.+++.+.+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 45679999999999999999999997543 333 35677788888899999999999999999876 556777889999
Q ss_pred cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
|++|+|||++++.||+.+..|+..+.... ..++.|++|||||+|+.+
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~------------------------------~~~~~piilVgNK~DL~~--- 159 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRAR------------------------------QTEDIPIILVGNKSDLVR--- 159 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSG------------------------------GGTTSCEEEEEECTTCGG---
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHh------------------------------CCCCCcEEEEEEChHHhc---
Confidence 99999999999999999999988875421 114678888888888852
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee 240 (730)
.+.+..++++.++..++++|+||||++|.||++
T Consensus 160 -----------------------------------------------~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 160 -----------------------------------------------CREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp -----------------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred -----------------------------------------------CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 256778889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 241 LFMQIAAELME 251 (730)
Q Consensus 241 LFe~Li~~l~e 251 (730)
+|+.+++.+..
T Consensus 193 lf~~l~~~i~~ 203 (211)
T 2g3y_A 193 LFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988743
No 59
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.94 E-value=1.2e-26 Score=220.03 Aligned_cols=168 Identities=30% Similarity=0.483 Sum_probs=144.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC-eEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN-ERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg-~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
.+..+||+|+|++|||||||+++|+++.+...+.||++.++....+.+++ ..+.+++|||||++.+..++..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34579999999999999999999999988877778998888888898876 67899999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc-eEEeccCCCcchhhHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA-TALASDKTDLDEDEHV 161 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P-VVLVGNK~DL~~~e~~ 161 (730)
+|+|||++++.+|+.+..|+..+...... ..+.| +++|+||+|+.+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-----------------------------~~~~~~iilv~nK~Dl~~---- 129 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEE-----------------------------SETQPLVALVGNKIDLEH---- 129 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHH-----------------------------HTCCCEEEEEEECGGGGG----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcc-----------------------------cCCCCeEEEEEEcccccc----
Confidence 99999999999999999999998764310 01233 677778777742
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.+.++.++++++++.+++++++|||++|.||+++
T Consensus 130 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 130 ----------------------------------------------MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp ----------------------------------------------GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred ----------------------------------------------ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 2457788999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy17467 242 FMQIAAELM 250 (730)
Q Consensus 242 Fe~Li~~l~ 250 (730)
|++|++.+.
T Consensus 164 ~~~l~~~~~ 172 (178)
T 2hxs_A 164 FQKVAAEIL 172 (178)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998773
No 60
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=1.4e-26 Score=229.53 Aligned_cols=178 Identities=28% Similarity=0.512 Sum_probs=147.3
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
.++..+||+|+|++|||||||+++|+++.+...+.||++.++ ...+.+++..+.++||||+|++.+..++..+++++|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 346779999999999999999999999999888889998655 5667788888999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 83 LILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 83 IILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
+|+|||++++.+|+++ ..|+..+.... ++.|+++||||+|+.++...
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~--------------------------------~~~piilv~nK~Dl~~~~~~ 150 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC--------------------------------PNTKMLLVGCKSDLRTDVST 150 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTCEEEEEEECGGGGGCHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC--------------------------------CCCCEEEEEechhhccchhh
Confidence 9999999999999998 67998886542 46789999999999753221
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecC-CCCChH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAK-ASDNVE 239 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAk-tG~GVe 239 (730)
...+ .+...+.++.++++++++.++ +.|++|||+ +|.||+
T Consensus 151 ~~~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~ 192 (205)
T 1gwn_A 151 LVEL--------------------------------------SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR 192 (205)
T ss_dssp HHHH--------------------------------------HTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHH
T ss_pred hhhh--------------------------------------cccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHH
Confidence 1000 011236788899999999988 699999999 689999
Q ss_pred HHHHHHHHHHHH
Q psy17467 240 KLFMQIAAELME 251 (730)
Q Consensus 240 eLFe~Li~~l~e 251 (730)
++|+.|++.++.
T Consensus 193 ~lf~~l~~~~l~ 204 (205)
T 1gwn_A 193 DIFHVATLACVN 204 (205)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
No 61
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=5.1e-26 Score=221.55 Aligned_cols=175 Identities=36% Similarity=0.623 Sum_probs=148.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
.++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45678999999999999999999999999988888999999999999999988999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+...... ....+.|+++|+||+|+.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---------------------------~~~~~~piilv~nK~Dl~------ 130 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASP---------------------------RDPENFPFVVLGNKIDLE------ 130 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCC---------------------------SSGGGSCEEEEEECTTSS------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccc---------------------------ccCCCCcEEEEEECCCCc------
Confidence 99999999999999999999988765310 011456777777777763
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-hcCCeEEEEecCCCCChHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-RHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-~lg~~fvEtSAktG~GVeeL 241 (730)
.+.+..+++..++. ..++++++|||++|.||+++
T Consensus 131 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 165 (207)
T 1vg8_A 131 ---------------------------------------------NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165 (207)
T ss_dssp ---------------------------------------------CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 34567788888888 67889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy17467 242 FMQIAAELMEKLAE 255 (730)
Q Consensus 242 Fe~Li~~l~e~~~~ 255 (730)
|++|++.+.+....
T Consensus 166 ~~~l~~~~~~~~~~ 179 (207)
T 1vg8_A 166 FQTIARNALKQETE 179 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 99999998776544
No 62
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=225.35 Aligned_cols=172 Identities=36% Similarity=0.668 Sum_probs=139.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
.+..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.++||||||++++..++..+++++|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 34569999999999999999999999998888889999888888999999999999999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+....
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~piilv~NK~Dl~~~~~~-- 151 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAA-------------------------------HETVPIMLVGNKADIRDTAAT-- 151 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC----------------------------------CCEEEEEECGGGHHHHHH--
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhc-------------------------------CCCCCEEEEEECccccccccc--
Confidence 99999999999999999999886543 146788999999999643210
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
...+.+..++++++++..+++|++|||++|.||+++|+
T Consensus 152 ------------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~ 189 (199)
T 2p5s_A 152 ------------------------------------------EGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVL 189 (199)
T ss_dssp ------------------------------------------TTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred ------------------------------------------ccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence 02356788999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy17467 244 QIAAELM 250 (730)
Q Consensus 244 ~Li~~l~ 250 (730)
+|++.+.
T Consensus 190 ~l~~~i~ 196 (199)
T 2p5s_A 190 HLAREVK 196 (199)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998774
No 63
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=4.6e-26 Score=216.96 Aligned_cols=173 Identities=25% Similarity=0.444 Sum_probs=145.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+++|++|||||||+++|+++.+...+.++++. .....+.+++..+.+++|||||++++..++..+++++|++|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc-eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 3589999999999999999999999998888888874 446677889999999999999999999999999999999999
Q ss_pred EeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 86 VYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 86 VyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+.......
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~~ 130 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--------------------------------PNTPIILVGTKLDLRDDKDTIEK 130 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--------------------------------TTSCEEEEEECHHHHTCHHHHHH
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEeEcccccccchhhhh
Confidence 99999999999997 6888886542 46789999999999753321100
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM 243 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe 243 (730)
+ .+...+.++.+++..+++.+++ ++++|||++|.||+++|+
T Consensus 131 ~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 172 (186)
T 1mh1_A 131 L--------------------------------------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 172 (186)
T ss_dssp H--------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred h--------------------------------------cccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHH
Confidence 0 0112367888999999999997 999999999999999999
Q ss_pred HHHHHH
Q psy17467 244 QIAAEL 249 (730)
Q Consensus 244 ~Li~~l 249 (730)
.+++.+
T Consensus 173 ~l~~~~ 178 (186)
T 1mh1_A 173 EAIRAV 178 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999877
No 64
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.5e-26 Score=219.09 Aligned_cols=165 Identities=42% Similarity=0.797 Sum_probs=146.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35699999999999999999999999998888899998998899999999999999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+++.+..|+..+.... ...+.|+++|+||+|+.
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~p~ilv~nK~Dl~-------- 134 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYC------------------------------TRNDIVNMLVGNKIDKE-------- 134 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCC------------------------------SCSCCEEEEEEECTTSS--------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc------------------------------CcCCCcEEEEEECCcCc--------
Confidence 9999999999999999998875432 12456777777777763
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+.+..+++.++++..++.|++|||++|.||+++|++
T Consensus 135 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 135 -------------------------------------------NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp -------------------------------------------SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred -------------------------------------------ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 3456778899999999999999999999999999999
Q ss_pred HHHHHH
Q psy17467 245 IAAELM 250 (730)
Q Consensus 245 Li~~l~ 250 (730)
|.+.+.
T Consensus 172 l~~~~~ 177 (195)
T 1x3s_A 172 LVEKII 177 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 65
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=227.53 Aligned_cols=168 Identities=25% Similarity=0.459 Sum_probs=142.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 3569999999999999999999999999988889988665 677777788899999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+..+.... ...+.|+++|+||+|+.+
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~------- 143 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGH------------------------------GKTRVPVVLVGNKADLSP------- 143 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----------------------------------CCCEEEEEECTTCGG-------
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECccCcc-------
Confidence 9999999999999999999986532 124678888889888852
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
.+.++.++++.+++.++++|++|||++|.||+++|+.
T Consensus 144 -------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 144 -------------------------------------------EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp -------------------------------------------GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred -------------------------------------------ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 2467888999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy17467 245 IAAELMEKL 253 (730)
Q Consensus 245 Li~~l~e~~ 253 (730)
|++.+.+..
T Consensus 181 l~~~i~~~~ 189 (201)
T 3oes_A 181 VIQEIARVE 189 (201)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhh
Confidence 999886543
No 66
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.1e-26 Score=229.54 Aligned_cols=172 Identities=45% Similarity=0.790 Sum_probs=142.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
.+++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.||||||++++..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 35678999999999999999999999999988888999989988899999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... ..+.|++||+||+|+.+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~-------------------------------~~~~piilv~nK~Dl~~----- 132 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENA-------------------------------DDNVAVGLIGNKSDLAH----- 132 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHC-------------------------------C--CEEEEEECCGGGGG-----
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-------------------------------CCCCeEEEEEECccccc-----
Confidence 999999999999999999999986643 14667888888888752
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.++.+++..+++..+++|++|||++|.||+++|
T Consensus 133 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 133 ---------------------------------------------LRAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167 (223)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 24577888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 243 MQIAAELMEKLAE 255 (730)
Q Consensus 243 e~Li~~l~e~~~~ 255 (730)
++|++.+.++...
T Consensus 168 ~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 168 EELINTIYQKVSK 180 (223)
T ss_dssp HHHHHHHTTCC--
T ss_pred HHHHHHHHHHhhh
Confidence 9999988654433
No 67
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=3.2e-27 Score=226.66 Aligned_cols=168 Identities=18% Similarity=0.293 Sum_probs=135.6
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCC-----------CCCcceeeEEEEEE-EeCCeEEEEEEEeCCCchhh
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG-----------QGATIGVDFMIKTV-EINNERIKLQIWDTAGQERF 69 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-----------~~pTig~d~~~~~i-~vdg~~v~LqLwDTpG~e~~ 69 (730)
..++..+||+|+|++|||||||++.+. +.+... +.||++.++....+ .+++..+.+++|||||++++
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 356678999999999999999996554 555544 33566666655555 66788899999999999999
Q ss_pred hhhhHhhhccccEEEEEeecC------CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCC
Q psy17467 70 RSITQSYYRSAHALILVYDIS------CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPA 143 (730)
Q Consensus 70 ~sl~~~~~r~ADaIILVyDvt------d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~ 143 (730)
..++..+++++|++|+|||++ +.++|+.+..|+.++.. ..++
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--------------------------------~~~~ 135 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--------------------------------TLDD 135 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--------------------------------CTTS
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--------------------------------ccCC
Confidence 999999999999999999999 45666666667766521 1257
Q ss_pred CceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc
Q psy17467 144 LATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH 223 (730)
Q Consensus 144 ~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l 223 (730)
.|+++|+||+|+.+ .++.++++++++..
T Consensus 136 ~piilv~NK~Dl~~----------------------------------------------------~~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 136 VPIVIQVNKRDLPD----------------------------------------------------ALPVEMVRAVVDPE 163 (198)
T ss_dssp SCEEEEEECTTSTT----------------------------------------------------CCCHHHHHHHHCTT
T ss_pred CCEEEEEEchhccc----------------------------------------------------ccCHHHHHHHHHhc
Confidence 78888888888742 36778999999999
Q ss_pred CC-eEEEEecCCCCChHHHHHHHHHHHHHHHH
Q psy17467 224 DM-YYLETSAKASDNVEKLFMQIAAELMEKLA 254 (730)
Q Consensus 224 g~-~fvEtSAktG~GVeeLFe~Li~~l~e~~~ 254 (730)
++ ++++|||++|.||+++|++|++.+.++..
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 99 99999999999999999999999876543
No 68
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=6.3e-26 Score=220.30 Aligned_cols=164 Identities=20% Similarity=0.341 Sum_probs=141.2
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
....+||+|+|++|||||||+++|+++.+...+.|+.+ .+...+.+++..+.+++|||+|++.+. +++++|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 34579999999999999999999999999888878743 345888899999999999999998776 78899999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.||+.+..|+..+.... ..++.|+++||||+|+.+.
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------~~~~~piilv~nK~Dl~~~----- 134 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFR------------------------------NASEVPMVLVGTQDAISAA----- 134 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTS------------------------------CGGGSCEEEEEECTTCBTT-----
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc------------------------------CCCCCCEEEEEECcccccc-----
Confidence 99999999999999999999986542 1146788888999998521
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fvEtSAktG~GVeeLF 242 (730)
..+.++.++++++++.++ +.|++|||++|.||+++|
T Consensus 135 -------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf 171 (184)
T 3ihw_A 135 -------------------------------------------NPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF 171 (184)
T ss_dssp -------------------------------------------BCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHH
T ss_pred -------------------------------------------cccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHH
Confidence 236788899999999997 899999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 243 MQIAAELMEK 252 (730)
Q Consensus 243 e~Li~~l~e~ 252 (730)
+++++.+.++
T Consensus 172 ~~l~~~i~~~ 181 (184)
T 3ihw_A 172 QDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 69
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=4.7e-26 Score=222.94 Aligned_cols=167 Identities=23% Similarity=0.360 Sum_probs=136.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh-hhhhhHhhhcccc
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGV--FPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER-FRSITQSYYRSAH 81 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~--f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~-~~sl~~~~~r~AD 81 (730)
+..+||+++|++|||||||+++|++.. +... .+++|.++..+.+.+++..+.+.+|||+|... +..++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456999999999999999999999643 3333 35677788888889999999999999999876 5567788899999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++|+|||++++.||+.+..|+..+.... ..++.|+++||||+|+.+
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~------------------------------~~~~~piilV~NK~Dl~~---- 128 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRAR------------------------------QTEDIPIILVGNKSDLVR---- 128 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHT------------------------------TTSCCCEEEEEECTTCGG----
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhh------------------------------CCCCCeEEEEEechhhhc----
Confidence 9999999999999999999988876542 124678888888888842
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
.+.+..++++.++..++++|+||||++|.||+++
T Consensus 129 ----------------------------------------------~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 129 ----------------------------------------------XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp ----------------------------------------------GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred ----------------------------------------------cccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 2457778888999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 242 FMQIAAELMEK 252 (730)
Q Consensus 242 Fe~Li~~l~e~ 252 (730)
|+.+++.+...
T Consensus 163 f~~l~~~~~~~ 173 (192)
T 2cjw_A 163 FEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988543
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=4.4e-26 Score=226.16 Aligned_cols=176 Identities=29% Similarity=0.537 Sum_probs=128.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+|+|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+.+|||+|++++..++..+++++|++|+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 469999999999999999999999998888888886 4446677889999999999999999999999999999999999
Q ss_pred EeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 86 VYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 86 VyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+.......
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~~ 159 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC--------------------------------KKVPIIVVGCKTDLRKDKSLVNK 159 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--------------------------------SSCCEEEEEECGGGGSCHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEChhhhccchhhhh
Confidence 99999999999996 6988886542 56789999999999754321100
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM 243 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe 243 (730)
+ .++..+.++.++++++++.+++ .|++|||++|.||+++|+
T Consensus 160 ~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~ 201 (214)
T 2j1l_A 160 L--------------------------------------RRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201 (214)
T ss_dssp H--------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred h--------------------------------------cccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH
Confidence 0 0112357888999999999998 999999999999999999
Q ss_pred HHHHHHHHH
Q psy17467 244 QIAAELMEK 252 (730)
Q Consensus 244 ~Li~~l~e~ 252 (730)
.|++.+.+.
T Consensus 202 ~l~~~~~~~ 210 (214)
T 2j1l_A 202 EAAEVALSS 210 (214)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999988654
No 71
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=7.9e-26 Score=219.99 Aligned_cols=166 Identities=28% Similarity=0.445 Sum_probs=143.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||+|+++ ...+..+++++|++|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 3569999999999999999999999999888888888544 56678888899999999999987 778889999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+..+..... .++.|+++|+||+|+.+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~piilv~NK~Dl~~------- 146 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKK------------------------------PKNVTLILVGNKADLDH------- 146 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT------------------------------TSCCCEEEEEECGGGGG-------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhC------------------------------CCCCcEEEEEECccccc-------
Confidence 99999999999999999998876431 24678888888888852
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC-ChHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD-NVEKLFM 243 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~-GVeeLFe 243 (730)
.+.++.++++++++.++++|++|||++|. ||+++|+
T Consensus 147 -------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 147 -------------------------------------------SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp -------------------------------------------GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred -------------------------------------------ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 24677889999999999999999999999 9999999
Q ss_pred HHHHHHHHH
Q psy17467 244 QIAAELMEK 252 (730)
Q Consensus 244 ~Li~~l~e~ 252 (730)
+|++.+.++
T Consensus 184 ~l~~~i~~~ 192 (196)
T 2atv_A 184 ELCREVRRR 192 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988653
No 72
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=1.2e-26 Score=228.13 Aligned_cols=173 Identities=28% Similarity=0.547 Sum_probs=145.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+...+.||++..+ ...+.+++..+.+++|||||++++..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3569999999999999999999999999888888888444 567778888899999999999999999999999999999
Q ss_pred EEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 85 LVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 85 LVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
+|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+.....
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~- 132 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--------------------------------PNVPIVLVGTKLDLRDDKGYL- 132 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTCCEEEEEECHHHHTCHHHH-
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEeCHHhhhCcccc-
Confidence 999999999999997 7998886542 467899999999986532110
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF 242 (730)
++ ..+.++.++++++++.+++ +|++|||++|.||+++|
T Consensus 133 --------------------------------------~~---~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 171 (212)
T 2j0v_A 133 --------------------------------------AD---HTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171 (212)
T ss_dssp --------------------------------------HT---CSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHH
T ss_pred --------------------------------------cc---ccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHH
Confidence 00 1235778899999999996 99999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 243 MQIAAELMEK 252 (730)
Q Consensus 243 e~Li~~l~e~ 252 (730)
+++++.+.+.
T Consensus 172 ~~l~~~~~~~ 181 (212)
T 2j0v_A 172 DTAIKVVLQP 181 (212)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhhh
Confidence 9999988653
No 73
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=9.5e-26 Score=220.99 Aligned_cols=175 Identities=27% Similarity=0.549 Sum_probs=147.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+...+.|+++.++. ..+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45689999999999999999999999998888888886654 45778888899999999999999999999999999999
Q ss_pred EEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 85 LVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 85 LVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+......
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~ 149 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC--------------------------------PNVPIILVGNKKDLRQDEHTRR 149 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--------------------------------TTCCEEEEEECGGGTTCHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEecHHhhcCccchh
Confidence 99999999999998 56888876532 4688999999999975432111
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF 242 (730)
.+ .+...+.++.+++.++++.+++ .|++|||++|.||+++|
T Consensus 150 ~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 191 (201)
T 2gco_A 150 EL--------------------------------------AKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191 (201)
T ss_dssp HH--------------------------------------HTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred hh--------------------------------------cccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHH
Confidence 00 0112356888999999999998 89999999999999999
Q ss_pred HHHHHHHH
Q psy17467 243 MQIAAELM 250 (730)
Q Consensus 243 e~Li~~l~ 250 (730)
+.|++.+.
T Consensus 192 ~~i~~~~l 199 (201)
T 2gco_A 192 EMATRAGL 199 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 74
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.94 E-value=5.3e-27 Score=259.55 Aligned_cols=245 Identities=16% Similarity=0.064 Sum_probs=174.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh-----------
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT----------- 73 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~----------- 73 (730)
..+||+++|++|||||||+|++++..+. ....|+++.+.....+.++|. .+.+|||+|..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999987652 334456666666778888885 57899999985433221
Q ss_pred -HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccC
Q psy17467 74 -QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDK 152 (730)
Q Consensus 74 -~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK 152 (730)
..+++.+|++++|+|+++..++++.. +...+.. .+.|+++|+||
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~~----------------------------------~~~~~ilv~NK 301 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQR-MAGLMER----------------------------------RGRASVVVFNK 301 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH----------------------------------TTCEEEEEEEC
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----------------------------------cCCCEEEEEEC
Confidence 24678899999999999887776531 2222211 45788899999
Q ss_pred CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEec
Q psy17467 153 TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA 232 (730)
Q Consensus 153 ~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSA 232 (730)
+|+.+.... ....+..+..+.++...++++++|||
T Consensus 302 ~Dl~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~SA 336 (439)
T 1mky_A 302 WDLVVHREK---------------------------------------------RYDEFTKLFREKLYFIDYSPLIFTSA 336 (439)
T ss_dssp GGGSTTGGG---------------------------------------------CHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred ccCCCchhh---------------------------------------------HHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 998632100 00001111223344445689999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceeee
Q psy17467 233 KASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKSV 312 (730)
Q Consensus 233 ktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~~ 312 (730)
++|.||+++|+.+.+.+.++..+..+...+++.+.. ...++|| ++.+..|++|....||.|+.++
T Consensus 337 ~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~-----------~~~~~~~----~~~ki~y~~q~~~~p~~~~~~~ 401 (439)
T 1mky_A 337 DKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKV-----------LAFTNLP----RGLKIFFGVQVDIKPPTFLFFV 401 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-----------HTTCCCS----TTCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHH-----------HHcCCCC----CCcEEEEEEecCCCCCEEEEEE
Confidence 999999999999998886665544555555554444 2234455 5566678999999999999999
Q ss_pred ccccccchhhHHHhHhhhhh-hhccCCceeEEEeec
Q psy17467 313 SGISQIRSDIVKSLSLYYYT-FVDLLHFKDCVYLSG 347 (730)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 347 (730)
+.++.++.+|.|||++.+|+ .|++.|+|+++.+++
T Consensus 402 n~~~~~~~~y~r~l~~~~r~~~~~~~~~pi~~~~~~ 437 (439)
T 1mky_A 402 NSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKR 437 (439)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEEEE
T ss_pred cCcccCCHHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 99999999999999999999 999999999999986
No 75
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.93 E-value=2.8e-26 Score=222.67 Aligned_cols=175 Identities=25% Similarity=0.478 Sum_probs=112.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCcceeeEEEEEEEeCCe--EEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQG--VFPPGQGATIGVDFMIKTVEINNE--RIKLQIWDTAGQERFRSITQSYYRSA 80 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~~~pTig~d~~~~~i~vdg~--~v~LqLwDTpG~e~~~sl~~~~~r~A 80 (730)
...+||+|+|++|||||||+++|+++ .+...+.+|++.++....+.+++. .+.+.+|||||++++..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 788788889988888888999887 89999999999999999999999999
Q ss_pred cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
|++|+|||++++.+|+.+..|+..+...... ...+.|+++|+||+|+.+.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----------------------------~~~~~piilv~nK~Dl~~~-- 147 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPD----------------------------RERPLRAVLVANKTDLPPQ-- 147 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSC----------------------------TTSCCEEEEEEECC-------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcc----------------------------cccCCcEEEEEECcccchh--
Confidence 9999999999999999999999998765410 0146778888888888520
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC-CCChH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA-SDNVE 239 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt-G~GVe 239 (730)
.+.++.++++++++.+++++++|||++ |.||+
T Consensus 148 -----------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~ 180 (208)
T 2yc2_C 148 -----------------------------------------------RHQVRLDMAQDWATTNTLDFFDVSANPPGKDAD 180 (208)
T ss_dssp -------------------------------------------------CCCHHHHHHHHHHTTCEEEECCC-------C
T ss_pred -----------------------------------------------hccCCHHHHHHHHHHcCCEEEEeccCCCCcCHH
Confidence 246778899999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17467 240 KLFMQIAAELMEKLAEK 256 (730)
Q Consensus 240 eLFe~Li~~l~e~~~~~ 256 (730)
++|++|++.+.+.....
T Consensus 181 ~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 181 APFLSIATTFYRNYEDK 197 (208)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999887665443
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.6e-25 Score=218.88 Aligned_cols=174 Identities=27% Similarity=0.554 Sum_probs=140.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+|+|++|||||||+++|+++.+...+.|+++.++. ..+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 4589999999999999999999999998888888875554 457788888999999999999999999999999999999
Q ss_pred EeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 86 VYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 86 VyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+.......
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~~ 150 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFC--------------------------------PNVPIILVANKKDLRSDEHVRTE 150 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--------------------------------TTCCEEEEEECGGGGGCHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEEchhhhccccchhh
Confidence 9999999999998 56888876532 56889999999999754321110
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM 243 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe 243 (730)
+ .++..+.++.+++..++...++ .|++|||++|.||+++|+
T Consensus 151 ~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 151 L--------------------------------------ARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp H--------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred h--------------------------------------hhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHH
Confidence 0 0112356888999999999998 899999999999999999
Q ss_pred HHHHHHH
Q psy17467 244 QIAAELM 250 (730)
Q Consensus 244 ~Li~~l~ 250 (730)
+|++.+.
T Consensus 193 ~l~~~i~ 199 (207)
T 2fv8_A 193 TATRAAL 199 (207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.6e-25 Score=208.33 Aligned_cols=163 Identities=28% Similarity=0.440 Sum_probs=139.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++++..++..+++.+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 58999999999999999999999998888888887544 45667788889999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.+++.+..|+..+..... ..++.|+++|+||+|+.+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~-----------------------------~~~~~pii~v~nK~Dl~~--------- 123 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKG-----------------------------DVESIPIMLVGNKCDESP--------- 123 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC--------------------------------CCCEEEEEECGGGGG---------
T ss_pred EECcCHHHHHHHHHHHHHHHHHhC-----------------------------CCCCCCEEEEEEcccccc---------
Confidence 999999999999999988876431 114678888888888853
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.+..++++.++...++++++|||++|.||+++|++|.
T Consensus 124 -----------------------------------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (172)
T 2erx_A 124 -----------------------------------------SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162 (172)
T ss_dssp -----------------------------------------GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred -----------------------------------------ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHH
Confidence 235667888899999999999999999999999999998
Q ss_pred HHH
Q psy17467 247 AEL 249 (730)
Q Consensus 247 ~~l 249 (730)
+.+
T Consensus 163 ~~~ 165 (172)
T 2erx_A 163 NLE 165 (172)
T ss_dssp HTC
T ss_pred HHH
Confidence 755
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.8e-25 Score=214.63 Aligned_cols=168 Identities=27% Similarity=0.413 Sum_probs=141.9
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSA 80 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~A 80 (730)
|++....+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+|||||++++..++..+++.+
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 80 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence 56667789999999999999999999999999888888887444 45667788889999999999999999999999999
Q ss_pred cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 81 HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 81 DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
|++|+|||++++.+|+.+..|+..+..... ..++.|+++|+||+|+.
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------------------------~~~~~piilv~nK~Dl~---- 127 (199)
T 2gf0_A 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKG-----------------------------SVEDIPVMLVGNKCDET---- 127 (199)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHHS-----------------------------CGGGSCEEEEEECTTCS----
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhc-----------------------------CCCCCCEEEEEECccCC----
Confidence 999999999999999999999888765431 01456777777777774
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHH
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVee 240 (730)
.+.+..+++..++..+++.+++|||++|.||++
T Consensus 128 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 128 -----------------------------------------------QREVDTREAQAVAQEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp -----------------------------------------------SCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred -----------------------------------------------ccccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Confidence 245677888999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy17467 241 LFMQIAAEL 249 (730)
Q Consensus 241 LFe~Li~~l 249 (730)
+|++|++.+
T Consensus 161 l~~~l~~~~ 169 (199)
T 2gf0_A 161 LFQELLTLE 169 (199)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998866
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.93 E-value=1.5e-25 Score=220.77 Aligned_cols=174 Identities=25% Similarity=0.453 Sum_probs=143.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+++|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4569999999999999999999999999888888886 566777888998999999999999999999999999999999
Q ss_pred EEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 85 LVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 85 LVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
+|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+......
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~ 154 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--------------------------------PNTPIILVGTKLDLRDDKDTIE 154 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------SSCCEEEEEECHHHHTCHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEechhhccchhhhh
Confidence 999999999999997 6888886542 5788999999999975432110
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF 242 (730)
.. .+...+.++.+++..+++..++ +|++|||++|.||+++|
T Consensus 155 ~~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 196 (204)
T 4gzl_A 155 KL--------------------------------------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196 (204)
T ss_dssp HH--------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred hh--------------------------------------hccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHH
Confidence 00 0112356888999999999997 59999999999999999
Q ss_pred HHHHHHH
Q psy17467 243 MQIAAEL 249 (730)
Q Consensus 243 e~Li~~l 249 (730)
+++++.+
T Consensus 197 ~~l~~~~ 203 (204)
T 4gzl_A 197 DEAIRAV 203 (204)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9998754
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=2.4e-26 Score=218.62 Aligned_cols=171 Identities=30% Similarity=0.567 Sum_probs=128.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+++|++|||||||+++|+++.+...+.||++..+ ...+.+++..+.+++|||||++++..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 458999999999999999999999998888888887433 3345567777889999999999999999999999999999
Q ss_pred EeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 86 VYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 86 VyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+......
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~~~~- 132 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--------------------------------PGVPIVLVGTKLDLRDDKQFFI- 132 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTCCEEEEEECHHHHTCHHHHH-
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEechhhhcCccccc-
Confidence 99999999999997 6988886542 4678999999999865322100
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM 243 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe 243 (730)
. ....+.++.++++++++.+++ +|++|||++|.||+++|+
T Consensus 133 --------------------------------------~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (182)
T 3bwd_D 133 --------------------------------------D-HPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFD 173 (182)
T ss_dssp --------------------------------------H-C--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHH
T ss_pred --------------------------------------c-cccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHH
Confidence 0 011246788899999999997 999999999999999999
Q ss_pred HHHHHH
Q psy17467 244 QIAAEL 249 (730)
Q Consensus 244 ~Li~~l 249 (730)
.+++.+
T Consensus 174 ~l~~~i 179 (182)
T 3bwd_D 174 AAIRVV 179 (182)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 81
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.93 E-value=8.6e-25 Score=202.69 Aligned_cols=162 Identities=30% Similarity=0.502 Sum_probs=140.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
.+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47999999999999999999999988877778776 44466778888889999999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
||++++.+++.+..|+..+..... ..+.|+++|+||+|+.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~------------------------------~~~~p~iiv~nK~Dl~---------- 121 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKD------------------------------SDDVPMVLVGNKSDLA---------- 121 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHT------------------------------CSCCCEEEEEECTTCS----------
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC------------------------------CCCCcEEEEEEchhhh----------
Confidence 999999999999999998876531 1356777777777774
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+.+..++++++++.+++++++|||++|.|++++|+++.
T Consensus 122 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 122 -----------------------------------------ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp -----------------------------------------CCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred -----------------------------------------hcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 245667889999999999999999999999999999999
Q ss_pred HHHH
Q psy17467 247 AELM 250 (730)
Q Consensus 247 ~~l~ 250 (730)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.93 E-value=2.1e-27 Score=232.05 Aligned_cols=166 Identities=47% Similarity=0.866 Sum_probs=138.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
+++..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 35678999999999999999999999999988888999989999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------~~~~p~ilv~nK~Dl~~----- 152 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYA-------------------------------SENVNKLLVGNKCDLTT----- 152 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC--------------------------------CCSEEEEC-CCSSCC------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------cCCCCEEEEEECccCCc-----
Confidence 999999999999999999999985432 24678888889998853
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.+..+++++++..+++++++|||++|.||+++|
T Consensus 153 ---------------------------------------------~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 153 ---------------------------------------------KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp ----------------------------------------------CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred ---------------------------------------------cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 23455667788999999999999999999999999
Q ss_pred HHHHHHH
Q psy17467 243 MQIAAEL 249 (730)
Q Consensus 243 e~Li~~l 249 (730)
++|++.+
T Consensus 188 ~~l~~~l 194 (199)
T 3l0i_B 188 MTMAAEI 194 (199)
T ss_dssp HHHTTTT
T ss_pred HHHHHHH
Confidence 9998766
No 83
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.93 E-value=9.9e-25 Score=210.09 Aligned_cols=165 Identities=30% Similarity=0.463 Sum_probs=132.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+++|++|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.+|||+|++++..++..+++.+|++|+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 458999999999999999999999988877777776 4445678888988999999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.+|+.+..|+..+..... ..+.|+++|+||+|+.
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~------------------------------~~~~p~ilv~nK~Dl~--------- 139 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKD------------------------------SDDVPMVLVGNKCDLP--------- 139 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHT------------------------------CSCCCEEEEEECTTCS---------
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC------------------------------CCCCeEEEEEECCcCC---------
Confidence 9999999999999999998866431 1356777777777774
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
.+.+..++++++++.+++++++|||++|.|++++|++|
T Consensus 140 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 140 ------------------------------------------TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp ------------------------------------------CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred ------------------------------------------cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 24567788999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy17467 246 AAELMEK 252 (730)
Q Consensus 246 i~~l~e~ 252 (730)
++.+.+.
T Consensus 178 ~~~~~~~ 184 (190)
T 3con_A 178 VREIRQY 184 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 84
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.92 E-value=9.9e-26 Score=223.68 Aligned_cols=164 Identities=32% Similarity=0.610 Sum_probs=143.2
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
.....+||+|+|++|||||||+++|+.+.+...+.++.|.++....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 34567999999999999999999988888888888999989999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++.+|+.+..|+..+.... ++.|+++|+||+|+.+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~----- 133 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--------------------------------ENIPIVLCGNKVDIKD----- 133 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--------------------------------TTCCEEEEEECTTSSS-----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--------------------------------CCCCEEEEEECCcccc-----
Confidence 999999999999999999999987643 4678888888888853
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
+.+. +++..+++..++.|++|||++|.||+++|
T Consensus 134 ----------------------------------------------~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 134 ----------------------------------------------RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp ----------------------------------------------CSSC-GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred ----------------------------------------------cccc-HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 1111 24456777889999999999999999999
Q ss_pred HHHHHHHH
Q psy17467 243 MQIAAELM 250 (730)
Q Consensus 243 e~Li~~l~ 250 (730)
++|.+.+.
T Consensus 167 ~~l~~~l~ 174 (221)
T 3gj0_A 167 LWLARKLI 174 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998873
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.92 E-value=1.7e-25 Score=209.27 Aligned_cols=161 Identities=23% Similarity=0.385 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEe
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVy 87 (730)
+||+++|++|||||||+++|+++.+.. +.||++ +....+..++ +.+++|||||++++..++..+++++|++|+||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 567877 3344555554 78999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHH
Q psy17467 88 DISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLM 167 (730)
Q Consensus 88 Dvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~ 167 (730)
|++++.||+.+..|+..+.... ..++.|+++|+||+|+.+....
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~~~~------ 119 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAED------------------------------ELRDAVLLVFANKQDLPNAMNA------ 119 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCCCH------
T ss_pred ECCCHHHHHHHHHHHHHHHhch------------------------------hhcCCeEEEEEECcCCcCCCCH------
Confidence 9999999999998988875421 1256788999999998532100
Q ss_pred hhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHH
Q psy17467 168 VFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247 (730)
Q Consensus 168 ~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~ 247 (730)
+.+..+.+...++..++++++|||++|.||+++|+++++
T Consensus 120 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (164)
T 1r8s_A 120 -----------------------------------------AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158 (164)
T ss_dssp -----------------------------------------HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred -----------------------------------------HHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHH
Confidence 000011111122234568999999999999999999998
Q ss_pred HHH
Q psy17467 248 ELM 250 (730)
Q Consensus 248 ~l~ 250 (730)
.+.
T Consensus 159 ~i~ 161 (164)
T 1r8s_A 159 QLR 161 (164)
T ss_dssp HC-
T ss_pred HHh
Confidence 764
No 86
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=3.9e-24 Score=206.58 Aligned_cols=177 Identities=16% Similarity=0.231 Sum_probs=130.9
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
......||+|+|++|||||||+++|+++.+.. .+.||++... ..+...+ +.+.+|||+|++++..++..+++++|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 34567899999999999999999999999988 7788888433 3444444 88999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++|+|||++++.||+.+..|+..+..... ..-.+...++.|+++|+||+|+.+....
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~piilv~NK~Dl~~~~~~ 145 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHED-----------------------IRRELPGGGRVPFLFFANKMDAAGAKTA 145 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHH-----------------------HHSBCTTSCBCCEEEEEECTTSTTCCCH
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChh-----------------------hhhcccccCCCCEEEEEECcCCCCCCCH
Confidence 99999999999999999999988765321 0000111247889999999998642100
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHH-HHHHHHhcCCeEEEEecCCCCChHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV-GEDFAKRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee-~~~lak~lg~~fvEtSAktG~GVee 240 (730)
+.+.... ...+++..++.|++|||++|.||++
T Consensus 146 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (199)
T 4bas_A 146 -----------------------------------------------AELVEILDLTTLMGDHPFVIFASNGLKGTGVHE 178 (199)
T ss_dssp -----------------------------------------------HHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHH
T ss_pred -----------------------------------------------HHHHHHhcchhhccCCeeEEEEeeCCCccCHHH
Confidence 0011111 1222355788999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 241 LFMQIAAELMEKL 253 (730)
Q Consensus 241 LFe~Li~~l~e~~ 253 (730)
+|++|++.+.+..
T Consensus 179 l~~~l~~~~~~~~ 191 (199)
T 4bas_A 179 GFSWLQETASRQS 191 (199)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999886543
No 87
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.91 E-value=1.2e-23 Score=205.80 Aligned_cols=169 Identities=43% Similarity=0.780 Sum_probs=145.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
+++.+||+++|++|||||||++++++..+...+.|++|.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 46679999999999999999999999999888889999899899999999999999999999999988899999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
++|||+++..+|+++..|+..+.... ..+.|+++++||+|+.+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~i~~v~nK~Dl~~------ 124 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHA-------------------------------DSNIVIMLVGNKSDLRH------ 124 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECTTCGG------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCeEEEEEECccccc------
Confidence 99999999999999988988875432 13567788888888853
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe 243 (730)
.+.++.++++.++...++.+++|||+++.|++++|+
T Consensus 125 --------------------------------------------~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 125 --------------------------------------------LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp --------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred --------------------------------------------ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 134566789999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 244 QIAAELMEKL 253 (730)
Q Consensus 244 ~Li~~l~e~~ 253 (730)
.+.+.+.+..
T Consensus 161 ~l~~~~~~~~ 170 (199)
T 2f9l_A 161 NILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999886543
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.91 E-value=1.8e-24 Score=203.32 Aligned_cols=164 Identities=22% Similarity=0.321 Sum_probs=127.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+..+||+++|++|||||||+++|+++.+.. +.||++. ....+.+++ +.+.+|||||++.+...+..+++++|++|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 345899999999999999999999988754 5577763 345666665 78999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+..+.... ..++.|+++|+||+|+.+....
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~~~~--- 126 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEE------------------------------ELRKAILVVFANKQDMEQAMTS--- 126 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCCCH---
T ss_pred EEEECCCHHHHHHHHHHHHHHHhch------------------------------hhCCCEEEEEEECCCCcCCCCH---
Confidence 9999999999999988888775432 1156788899999998642100
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
+.+....+...+...++++++|||++|.||+++|++
T Consensus 127 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 127 --------------------------------------------SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp --------------------------------------------HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHH
T ss_pred --------------------------------------------HHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHH
Confidence 001111111223345678999999999999999999
Q ss_pred HHHHHH
Q psy17467 245 IAAELM 250 (730)
Q Consensus 245 Li~~l~ 250 (730)
+++.+.
T Consensus 163 l~~~i~ 168 (171)
T 1upt_A 163 LVETLK 168 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998773
No 89
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=7.4e-25 Score=211.75 Aligned_cols=165 Identities=24% Similarity=0.408 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCcceeeEEEEEEEe---CCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG--VFPPGQGATIGVDFMIKTVEI---NNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~~~pTig~d~~~~~i~v---dg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
.+||+|+|++|||||||+++|++. .+...+.+|+|.++....+.+ ++..+.+++|||+|++++..++..+++++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999985 455667789988887766654 345688999999999999999999999999
Q ss_pred EEEEEeecCCC-CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 82 ALILVYDISCQ-PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 82 aIILVyDvtd~-eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
++++|||++++ .+|+.+..|+.++.... ++.|+++||||+|+.+...
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--------------------------------~~~piilv~nK~Dl~~~~~ 129 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--------------------------------SSSPVILVGTHLDVSDEKQ 129 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--------------------------------TTCEEEEEEECGGGCCHHH
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--------------------------------CCCcEEEEEECCCcccchh
Confidence 99999999998 58999999999886532 4678889999999864321
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe----EEEEecCCCC
Q psy17467 161 VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY----YLETSAKASD 236 (730)
Q Consensus 161 ~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~----fvEtSAktG~ 236 (730)
.. .+..+.++.+++.++++ |++|||++|.
T Consensus 130 ~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
T 2zej_A 130 RK-----------------------------------------------ACMSKITKELLNKRGFPAIRDYHFVNATEES 162 (184)
T ss_dssp HH-----------------------------------------------HHHHHHHHHTTTCTTSCEEEEEEECCTTSCC
T ss_pred hH-----------------------------------------------HHHHHHHHHHHHhcCCcchhheEEEecccCc
Confidence 00 01134566777778886 9999999996
Q ss_pred -ChHHHHHHHHHHHH
Q psy17467 237 -NVEKLFMQIAAELM 250 (730)
Q Consensus 237 -GVeeLFe~Li~~l~ 250 (730)
|++++++.|.+.+.
T Consensus 163 ~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 163 DALAKLRKTIINESL 177 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 99999999988774
No 90
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=1.1e-24 Score=210.87 Aligned_cols=165 Identities=21% Similarity=0.339 Sum_probs=128.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+..+||+|+|++|||||||+++|+++.+...+.||++.++. .+..++ +.+.+|||+|++++..++..+++++|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 45699999999999999999999999998888899886654 344444 88999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+..+.... ...+.|+++|+||+|+.+....
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~~~~--- 142 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKP------------------------------QLQGIPVLVLGNKRDLPGALDE--- 142 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCCEEEEEECTTSTTCCCH---
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCc------------------------------ccCCCCEEEEEECCCCccCCCH---
Confidence 9999999999999999988875421 1156788999999998631100
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
+.+........+...++.+++|||++|.||+++|++
T Consensus 143 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 143 --------------------------------------------KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp --------------------------------------------HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred --------------------------------------------HHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 000000001111234568999999999999999999
Q ss_pred HHHHHH
Q psy17467 245 IAAELM 250 (730)
Q Consensus 245 Li~~l~ 250 (730)
|++.+.
T Consensus 179 l~~~~~ 184 (188)
T 1zd9_A 179 LIQHSK 184 (188)
T ss_dssp HHHTCC
T ss_pred HHHHHH
Confidence 988764
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=1e-23 Score=202.29 Aligned_cols=159 Identities=21% Similarity=0.283 Sum_probs=127.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+..+||+++|++|||||||+++++++. ...+.||++. ....+.+++ +.+++|||||++++...+..+++++|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999888 6667788874 345666665 78999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.||+.+..|+..+.... ..++.|+++|+||+|+.+..
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~~----- 135 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEE------------------------------RLAGATLLIFANKQDLPGAL----- 135 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCC-----
T ss_pred EEEECcCHHHHHHHHHHHHHHHhCh------------------------------hcCCCcEEEEEeCccCCCCC-----
Confidence 9999999999999999988875432 12567888899999985311
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVE 239 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVe 239 (730)
..++..+. +...++++++|||++|.||+
T Consensus 136 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 136 -----------------------------------------------SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp -----------------------------------------------CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred -----------------------------------------------CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 11121111 12346789999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 240 KLFMQIAAELM 250 (730)
Q Consensus 240 eLFe~Li~~l~ 250 (730)
++|+++.+.+.
T Consensus 169 ~l~~~l~~~i~ 179 (186)
T 1ksh_A 169 PGIDWLLDDIS 179 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.91 E-value=5.7e-24 Score=205.50 Aligned_cols=162 Identities=17% Similarity=0.265 Sum_probs=129.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGV-FPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~-f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaI 83 (730)
...+||+|+|++|||||||+++|+++. +...+.+|++ +....+.+++ +.+.+|||+|++++..++..+++++|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 356899999999999999999999887 5666778887 4556677776 7899999999999999999999999999
Q ss_pred EEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 84 ILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 84 ILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
|+|||++++.+|+.+..|+..+..... ....+.|+++|+||+|+.+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~----------------------------~~~~~~piilv~nK~Dl~~------ 140 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPD----------------------------IKHRRIPILFFANKMDLRD------ 140 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTT----------------------------TTTSCCCEEEEEECTTSTT------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChh----------------------------hccCCCeEEEEEeCcCccc------
Confidence 999999999999999999988765321 0114678888888888853
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-----hcCCeEEEEecCCCCCh
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-----RHDMYYLETSAKASDNV 238 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-----~lg~~fvEtSAktG~GV 238 (730)
.+..++..+.+. ..++.+++|||++|.||
T Consensus 141 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 141 ----------------------------------------------AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174 (190)
T ss_dssp ----------------------------------------------CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred ----------------------------------------------CCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence 123344444432 23678999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 239 EKLFMQIAAELM 250 (730)
Q Consensus 239 eeLFe~Li~~l~ 250 (730)
+++|++|.+.+.
T Consensus 175 ~~l~~~l~~~i~ 186 (190)
T 2h57_A 175 QEGVDWLQDQIQ 186 (190)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 93
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.91 E-value=1.5e-23 Score=219.00 Aligned_cols=174 Identities=26% Similarity=0.465 Sum_probs=146.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+++|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+++|||+|++.+..++..+++++|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999999888888887 4446677889999999999999999999999999999999999
Q ss_pred EeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 86 VYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 86 VyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
|||++++.+|+++. .|+..+.... ++.|+++|+||+|+.+.......
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------~~~p~ilv~nK~Dl~~~~~~~~~ 280 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--------------------------------PNTPIILVGTKLDLRDDKDTIEK 280 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--------------------------------TTSCEEEEEECHHHHTCHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--------------------------------CCCcEEEEEEchhcccccchhhh
Confidence 99999999999987 6888886543 36789999999998643221100
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLFM 243 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLFe 243 (730)
+ .+...+.++.+++.++++..++ +|++|||++|.||+++|+
T Consensus 281 ~--------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 322 (332)
T 2wkq_A 281 L--------------------------------------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322 (332)
T ss_dssp H--------------------------------------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred c--------------------------------------cccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHH
Confidence 0 0112367889999999999998 999999999999999999
Q ss_pred HHHHHHH
Q psy17467 244 QIAAELM 250 (730)
Q Consensus 244 ~Li~~l~ 250 (730)
.|++.+.
T Consensus 323 ~l~~~~~ 329 (332)
T 2wkq_A 323 EAIRAVL 329 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998774
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=5.3e-24 Score=205.22 Aligned_cols=157 Identities=22% Similarity=0.317 Sum_probs=122.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+++|++|||||||+++|+++.+. .+.||++.. ...+.+++ +.+++|||+|++++..++..+++++|++|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4689999999999999999999998887 566777743 34556666 889999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.||+.+..|+..+.... ...+.|+++|+||+|+.+.
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~------- 132 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHE------------------------------DLRKAGLLIFANKQDVKEC------- 132 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSG------------------------------GGTTCEEEEEEECTTSTTC-------
T ss_pred EEeCCCHHHHHHHHHHHHHHHhch------------------------------hhCCCeEEEEEECCCCcCC-------
Confidence 999999999999999998876532 1146788888899988531
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHH-----HhcCCeEEEEecCCCCChHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFA-----KRHDMYYLETSAKASDNVEK 240 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la-----k~lg~~fvEtSAktG~GVee 240 (730)
...++..+.. +..++.+++|||++|.||++
T Consensus 133 ---------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 133 ---------------------------------------------MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp ---------------------------------------------CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred ---------------------------------------------CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence 1222222221 23467899999999999999
Q ss_pred HHHHHHHHH
Q psy17467 241 LFMQIAAEL 249 (730)
Q Consensus 241 LFe~Li~~l 249 (730)
+|++|++.+
T Consensus 168 l~~~l~~~~ 176 (187)
T 1zj6_A 168 GLEWMMSRL 176 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999877
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.91 E-value=7.2e-25 Score=213.91 Aligned_cols=168 Identities=22% Similarity=0.309 Sum_probs=124.8
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEE--e-CCeEEEEEEEeCCCchhhhhhh---Hhh
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVE--I-NNERIKLQIWDTAGQERFRSIT---QSY 76 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~--v-dg~~v~LqLwDTpG~e~~~sl~---~~~ 76 (730)
..+..+||+++|++|||||||++++.+. +... ++.+.++....+. + ++..+.+++|||+|++++.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3456799999999999999999988764 3333 4444444333333 3 2566889999999999987766 899
Q ss_pred hccccEEEEEeecCCC--CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 77 YRSAHALILVYDISCQ--PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 77 ~r~ADaIILVyDvtd~--eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
++++|++|+|||++++ ++++.+..|+.++... .++.|+++||||+|
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--------------------------------~~~~piilv~nK~D 140 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--------------------------------NPDMNFEVFIHKVD 140 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--------------------------------CTTCEEEEEEECGG
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--------------------------------CCCCcEEEEEeccc
Confidence 9999999999999998 4455555566655332 25789999999999
Q ss_pred cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH----hcCCeEEEE
Q psy17467 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK----RHDMYYLET 230 (730)
Q Consensus 155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak----~lg~~fvEt 230 (730)
+.+++.... ..+.+..++++++++ ..++.|++|
T Consensus 141 l~~~~~~~~-------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~e~ 177 (196)
T 3llu_A 141 GLSDDHKIE-------------------------------------------TQRDIHQRANDDLADAGLEKLHLSFYLT 177 (196)
T ss_dssp GSCHHHHHH-------------------------------------------HHHHHHHHHHHHHHHTTCTTSCEEEEEE
T ss_pred cCchhhhhH-------------------------------------------HHhHHHHHHHHHHHHhhhhcCCcceEEE
Confidence 876432110 124566678888888 778999999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q psy17467 231 SAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 231 SAktG~GVeeLFe~Li~~l 249 (730)
||++ .||+++|+.+++.+
T Consensus 178 Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 178 SIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CTTS-THHHHHHHHHHHHT
T ss_pred Eech-hhHHHHHHHHHHHh
Confidence 9999 99999999998764
No 96
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.91 E-value=7.8e-24 Score=206.25 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=124.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+++|++|||||||+++|.++.+. .+.||++. ....+.+++ +.+++|||||++++..++..+++++|++|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999998875 45577774 356777787 889999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.||+.+..|+..+.+.. ...+.|+++|+||+|+.+.
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~------- 139 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIA------------------------------ELKDVPFVILGNKIDAPNA------- 139 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCCEEEEEECTTSTTC-------
T ss_pred EEECCChHHHHHHHHHHHHHHcch------------------------------hhcCCCEEEEEECCCCcCC-------
Confidence 999999999999999998875432 1256788899999998531
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH------------HHhcCCeEEEEecC
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF------------AKRHDMYYLETSAK 233 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l------------ak~lg~~fvEtSAk 233 (730)
++.+++.+. +...+++|++|||+
T Consensus 140 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 140 ---------------------------------------------VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp ---------------------------------------------CCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred ---------------------------------------------CCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 122222222 23346789999999
Q ss_pred CCCChHHHHHHHHH
Q psy17467 234 ASDNVEKLFMQIAA 247 (730)
Q Consensus 234 tG~GVeeLFe~Li~ 247 (730)
+|.||+++|++|.+
T Consensus 175 ~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQ 188 (190)
T ss_dssp TTBSHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHh
Confidence 99999999999875
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.91 E-value=5.4e-24 Score=205.49 Aligned_cols=160 Identities=22% Similarity=0.298 Sum_probs=124.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+..+||+++|++|||||||+++|.++.+. .+.||+|. ....+.+++ +.+++|||+|++.+...+..+++++|++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999999987653 45577773 345666665 78999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+.++.... ...+.|+++|+||+|+.+..
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~~----- 133 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEE------------------------------KLSCVPVLIFANKQDLLTAA----- 133 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCG------------------------------GGTTCCEEEEEECTTSTTCC-----
T ss_pred EEEECcCHHHHHHHHHHHHHHHhCh------------------------------hhcCCCEEEEEECcCcccCC-----
Confidence 9999999999999998888764321 12567888999999985311
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVE 239 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVe 239 (730)
..++..+. +...++.+++|||++|.||+
T Consensus 134 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 134 -----------------------------------------------PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp -----------------------------------------------CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred -----------------------------------------------CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 11111111 12345689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 240 KLFMQIAAELME 251 (730)
Q Consensus 240 eLFe~Li~~l~e 251 (730)
++|+++++.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987743
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.84 E-value=5.8e-26 Score=222.30 Aligned_cols=174 Identities=25% Similarity=0.457 Sum_probs=141.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+++|||||++++..++..+++++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 3569999999999999999999999988887778876 444566777888889999999999999999999999999999
Q ss_pred EEeecCCCCchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHH
Q psy17467 85 LVYDISCQPTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLA 163 (730)
Q Consensus 85 LVyDvtd~eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~ 163 (730)
+|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+.+......
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~--------------------------------~~~piilv~NK~Dl~~~~~~~~ 154 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--------------------------------PNTPIILVGTKLDLRDDKDTIE 154 (204)
Confidence 999999999999987 6877765432 3678999999999964321000
Q ss_pred HHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCChHHHH
Q psy17467 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNVEKLF 242 (730)
Q Consensus 164 ~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GVeeLF 242 (730)
...+...+.+..+++.++++..++ ++++|||++|.||+++|
T Consensus 155 --------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~ 196 (204)
T 3th5_A 155 --------------------------------------KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196 (204)
Confidence 000111245677888999999998 89999999999999999
Q ss_pred HHHHHHH
Q psy17467 243 MQIAAEL 249 (730)
Q Consensus 243 e~Li~~l 249 (730)
+.|++.+
T Consensus 197 ~~l~~~i 203 (204)
T 3th5_A 197 DEAIRAV 203 (204)
Confidence 9998765
No 99
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=6e-23 Score=200.45 Aligned_cols=166 Identities=43% Similarity=0.786 Sum_probs=145.8
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccE
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHA 82 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADa 82 (730)
++++.+||+|+|++|||||||++++.+..+...+.||++.++....+.+++..+.+++||++|.+++..++..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 45678999999999999999999999999988889999999999999999999999999999999998899999999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+++|||+++..+|+++..|+..+.... ..+.|+++++||+|+.+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------~~~~~i~~v~nK~Dl~~----- 148 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHA-------------------------------DSNIVIMLVGNKSDLRH----- 148 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------CTTCEEEEEEECGGGGG-----
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-------------------------------CCCCcEEEEEECccccc-----
Confidence 999999999999999988988775432 13567778888888752
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHH
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLF 242 (730)
.+.+..++++.++...++.+++|||+++.|++++|
T Consensus 149 ---------------------------------------------~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~ 183 (191)
T 1oix_A 149 ---------------------------------------------LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183 (191)
T ss_dssp ---------------------------------------------GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred ---------------------------------------------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 13456788999999999999999999999999999
Q ss_pred HHHHHHH
Q psy17467 243 MQIAAEL 249 (730)
Q Consensus 243 e~Li~~l 249 (730)
+.+.+.+
T Consensus 184 ~~l~~~i 190 (191)
T 1oix_A 184 QTILTEI 190 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 100
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.90 E-value=1.4e-24 Score=211.83 Aligned_cols=162 Identities=23% Similarity=0.369 Sum_probs=120.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+|+|++|||||||+++|+++.+.. +.||++ +....+..++ +.+.+|||||++++..++..+++++|++|+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888763 457776 4445566665 889999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.+|+.+..|+..+.... ..++.|+++|+||+|+.+....
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~~~~---- 148 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQED------------------------------ELRDAVLLVFANKQDMPNAMPV---- 148 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCCCH----
T ss_pred EEECCCHHHHHHHHHHHHHHhccc------------------------------ccCCCeEEEEEECCCCCCCCCH----
Confidence 999999999999999988875422 1146788899999998532100
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
+.+..+.+...+...++++++|||++|.||+++|++|
T Consensus 149 -------------------------------------------~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 149 -------------------------------------------SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 185 (192)
T ss_dssp -------------------------------------------HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHH
Confidence 0011111111222345689999999999999999999
Q ss_pred HHHH
Q psy17467 246 AAEL 249 (730)
Q Consensus 246 i~~l 249 (730)
++.+
T Consensus 186 ~~~i 189 (192)
T 2b6h_A 186 SHEL 189 (192)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8876
No 101
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.90 E-value=9.3e-24 Score=202.85 Aligned_cols=157 Identities=22% Similarity=0.303 Sum_probs=123.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+ ..+.++++... ..+.+++ +.+.+|||+|++++..++..+++++|++|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999988 45567777443 4556666 88999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+..+.... ...+.|+++|+||+|+.+.
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~~------ 137 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHE------------------------------DLRKAGLLIFANKQDVKEC------ 137 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTC------
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCh------------------------------hhCCCeEEEEEECCCcccC------
Confidence 9999999999999999988875431 1256788888999998531
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH-----HHhcCCeEEEEecCCCCChH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF-----AKRHDMYYLETSAKASDNVE 239 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l-----ak~lg~~fvEtSAktG~GVe 239 (730)
...++..+. +...++.+++|||++|.||+
T Consensus 138 ----------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 171 (181)
T 2h17_A 138 ----------------------------------------------MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 171 (181)
T ss_dssp ----------------------------------------------CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred ----------------------------------------------CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 111222211 12346689999999999999
Q ss_pred HHHHHHHHH
Q psy17467 240 KLFMQIAAE 248 (730)
Q Consensus 240 eLFe~Li~~ 248 (730)
++|++|++.
T Consensus 172 ~l~~~l~~~ 180 (181)
T 2h17_A 172 QGLEWMMSR 180 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999998753
No 102
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.90 E-value=1.4e-23 Score=206.06 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=117.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+++|++|||||||+++|.++.+. .+.||++.+ ...+.+++ +.+++|||||++++..++..+++++|++|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999988875 455777654 35667777 889999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.+|+.+..|+.++.+.. ...+.|+++||||+|+.+
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~NK~Dl~~-------- 140 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDE------------------------------TIANVPILILGNKIDRPE-------- 140 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCG------------------------------GGTTSCEEEEEECTTSTT--------
T ss_pred EEECCCHHHHHHHHHHHHHHHhCc------------------------------ccCCCcEEEEEECCCccc--------
Confidence 999999999999999998876432 114678888889888853
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-----------------hcCCeEE
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK-----------------RHDMYYL 228 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak-----------------~lg~~fv 228 (730)
.++.+++++++. ..++.++
T Consensus 141 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 141 --------------------------------------------AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp --------------------------------------------CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred --------------------------------------------cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 122333333332 1356899
Q ss_pred EEecCCCCChHHHHHHHHHH
Q psy17467 229 ETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 229 EtSAktG~GVeeLFe~Li~~ 248 (730)
+|||++|.||+++|++|.+.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999754
No 103
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.3e-23 Score=200.37 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=123.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+..+||+++|++|||||||+++++++.+ ..+.||++.. ...+.+++ +.+.+|||||++++...+..+++++|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4569999999999999999999998877 4566787743 45566666 88999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+..+.... ...+.|+++|+||+|+.+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~------ 134 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEE------------------------------ELQDAALLVFANKQDQPGA------ 134 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSS------------------------------TTSSCEEEEEEECTTSTTC------
T ss_pred EEEECCCHHHHHHHHHHHHHHHcCh------------------------------hhCCCeEEEEEECCCCCCC------
Confidence 9999999999999999988875421 1257888999999998531
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHH-----HhcCCeEEEEecCCCCChH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFA-----KRHDMYYLETSAKASDNVE 239 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la-----k~lg~~fvEtSAktG~GVe 239 (730)
...++..+.. ...++++++|||++|.||+
T Consensus 135 ----------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 135 ----------------------------------------------LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp ----------------------------------------------CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred ----------------------------------------------CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 1112221111 1235689999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17467 240 KLFMQIAAELMEK 252 (730)
Q Consensus 240 eLFe~Li~~l~e~ 252 (730)
++|+++.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988543
No 104
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.90 E-value=2.6e-24 Score=207.40 Aligned_cols=165 Identities=21% Similarity=0.311 Sum_probs=126.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
+..+||+++|++|||||||+++|+++.+.. +.||++. ....+.+++ +.+.+|||||++++...+..+++++|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 456999999999999999999999888754 5577773 344566665 78999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+..+.... ..++.|+++|+||+|+.+....
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilv~nK~Dl~~~~~~--- 141 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDED------------------------------ELRKSLLLIFANKQDLPDAASE--- 141 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCS------------------------------TTTTCEEEEEEECTTSTTCCCH---
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh------------------------------hcCCCeEEEEEECCCCcCCCCH---
Confidence 9999999999999988888775421 1256789999999998642100
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
+.+....+...+...++++++|||++|.||+++|++
T Consensus 142 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (189)
T 2x77_A 142 --------------------------------------------AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDW 177 (189)
T ss_dssp --------------------------------------------HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred --------------------------------------------HHHHHHhChhhccCCceEEEEccCCCccCHHHHHHH
Confidence 000111111122344678999999999999999999
Q ss_pred HHHHHHH
Q psy17467 245 IAAELME 251 (730)
Q Consensus 245 Li~~l~e 251 (730)
+.+.+.+
T Consensus 178 l~~~i~~ 184 (189)
T 2x77_A 178 LVERLRE 184 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988743
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.89 E-value=1.2e-23 Score=207.01 Aligned_cols=200 Identities=20% Similarity=0.225 Sum_probs=122.6
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe-EEEEEEEeCCCchhhhh-hhHhhhc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-RIKLQIWDTAGQERFRS-ITQSYYR 78 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~-~v~LqLwDTpG~e~~~s-l~~~~~r 78 (730)
|......+||+++|++|||||||+++|+++.+...+.+ ++.++.. +.+++. .+.+++|||||++++.. ++..+++
T Consensus 1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 77 (214)
T 2fh5_B 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS 77 (214)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGG
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHh
Confidence 55566779999999999999999999999998877744 4434433 666644 58899999999999988 8889999
Q ss_pred cccEEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 79 SAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 79 ~ADaIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
++|++|+|||+++.. ++..+..|+..+.... ....++.|+++|+||+|+.+
T Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDS----------------------------MALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH----------------------------HTSTTCCEEEEEEECTTSTT
T ss_pred hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhh----------------------------hhcccCCCEEEEEECCCCCC
Confidence 999999999999843 4555555444433221 01235789999999999975
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccc-ccccCCCCChHHHHHHHHhc---CCeEEEEecC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNK-IDREDREIPTEVGEDFAKRH---DMYYLETSAK 233 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK-~DL~~R~Vs~ee~~~lak~l---g~~fvEtSAk 233 (730)
........... ...++.... .+...+..+ .+...+.+..++++.++... ++.|+||||+
T Consensus 130 ~~~~~~~~~~l--~~~l~~~~~---------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk 192 (214)
T 2fh5_B 130 AKSAKLIQQQL--EKELNTLRV---------------TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAK 192 (214)
T ss_dssp CCCHHHHHHHH--HHHHHHHHH---------------HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC
T ss_pred cccHHHHHHHH--HHHHHHHhc---------------cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeecc
Confidence 42110000000 000000000 000000000 00011334444555566543 7789999999
Q ss_pred CC------CChHHHHHHHHHH
Q psy17467 234 AS------DNVEKLFMQIAAE 248 (730)
Q Consensus 234 tG------~GVeeLFe~Li~~ 248 (730)
+| .||+++|++|.+.
T Consensus 193 ~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 193 GGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -------CCBCHHHHHHHHHH
T ss_pred CCCccccccChHHHHHHHHHh
Confidence 99 9999999999864
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.89 E-value=6.7e-23 Score=194.68 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=116.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh------hhhHhhhc--
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR------SITQSYYR-- 78 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~------sl~~~~~r-- 78 (730)
.++|+++|++|||||||+++|++..+...+.|+.+.+.....+.+++ ..+++|||||+.++. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999999887766667777677677777777 679999999998764 34466665
Q ss_pred cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
++|++++|+|+++ ++....|+.++.. .+.|+++|+||+|+.+.
T Consensus 81 ~~~~~i~v~D~~~---~~~~~~~~~~~~~----------------------------------~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 81 KPDLVVNIVDATA---LERNLYLTLQLME----------------------------------MGANLLLALNKMDLAKS 123 (165)
T ss_dssp CCSEEEEEEETTC---HHHHHHHHHHHHH----------------------------------TTCCEEEEEECHHHHHH
T ss_pred CCCEEEEEecCCc---hhHhHHHHHHHHh----------------------------------cCCCEEEEEEchHhccc
Confidence 8999999999987 3444557666532 24678888888887531
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCCh
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV 238 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GV 238 (730)
+.+.. +++++++.+++++++|||++|.||
T Consensus 124 --------------------------------------------------~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 124 --------------------------------------------------LGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp --------------------------------------------------TTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred --------------------------------------------------cChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 12222 467888888999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 239 EKLFMQIAAEL 249 (730)
Q Consensus 239 eeLFe~Li~~l 249 (730)
+++|+++.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 107
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.88 E-value=2e-23 Score=214.52 Aligned_cols=164 Identities=22% Similarity=0.344 Sum_probs=124.1
Q ss_pred CcceeEEEEEcCC---------CCCHHHHHHHHHc---CCCCCCCCCcc-eeeEEEEEEE--------------eCCeEE
Q psy17467 4 YKFLFKVVLVGNA---------GVGKTCLVRRFTQ---GVFPPGQGATI-GVDFMIKTVE--------------INNERI 56 (730)
Q Consensus 4 ~~~~iKIvVLG~p---------nVGKSSLLnrLl~---~~f~~~~~pTi-g~d~~~~~i~--------------vdg~~v 56 (730)
.+..+||+|+|++ |||||||+++|++ ..+...+.|++ +.++..+.+. +++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567999999999 9999999999999 56766676765 4444333222 466778
Q ss_pred EEEEEe-----------------------CCCchhhhhhhHhhhc---------------------cccEEEEEeecCCC
Q psy17467 57 KLQIWD-----------------------TAGQERFRSITQSYYR---------------------SAHALILVYDISCQ 92 (730)
Q Consensus 57 ~LqLwD-----------------------TpG~e~~~sl~~~~~r---------------------~ADaIILVyDvtd~ 92 (730)
.++||| ++|++++..++..+++ +||++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 6677777777777777 89999999999998
Q ss_pred --CchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhh
Q psy17467 93 --PTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFV 170 (730)
Q Consensus 93 --eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~ 170 (730)
.||+.+..|+.++..... .++.|+++||||+|+.+.
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~------------------------------~~~~piilV~NK~Dl~~~------------ 213 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLA------------------------------KTKKPIVVVLTKCDEGVE------------ 213 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHH------------------------------HTTCCEEEEEECGGGBCH------------
T ss_pred chhhHHHHHHHHHHHHHHhc------------------------------cCCCCEEEEEEccccccc------------
Confidence 999999999999876420 145788888888888532
Q ss_pred hhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh-cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 171 AVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 171 a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~-lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
+.+ ++++++++. .+++|++|||++|.||+++|++|++.+
T Consensus 214 --------------------------------------~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 214 --------------------------------------RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp --------------------------------------HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------------------------HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 112 467778876 488999999999999999999998876
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=2.1e-21 Score=194.33 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=118.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCc------hh----hhhhhHh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ------ER----FRSITQS 75 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~------e~----~~sl~~~ 75 (730)
..+||+|+|++|||||||+++|+++.+.....+..+.+.....+.+++ +.+.||||||. +. +.. ...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHH
Confidence 468999999999999999999999887644444444445555555565 77999999998 32 222 234
Q ss_pred hhccccEEEEEeecCCCCchhhh--HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 76 YYRSAHALILVYDISCQPTFDCL--TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 76 ~~r~ADaIILVyDvtd~eSfe~L--~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
++..+|++|+|||++++.+|+.. ..|+..+... .++.|+++|+||+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--------------------------------~~~~piilv~nK~ 152 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--------------------------------FSNKSIVIGFNKI 152 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--------------------------------C-CCCEEEEEECG
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--------------------------------hcCCcEEEEEeCc
Confidence 57889999999999999998732 2344444321 1467888888988
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChH---HHHHHHHhcC--CeEE
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTE---VGEDFAKRHD--MYYL 228 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~e---e~~~lak~lg--~~fv 228 (730)
|+.+. +.+..+ .++.++...+ +.++
T Consensus 153 Dl~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 153 DKCNM--------------------------------------------------DSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp GGCC----------------------------------------------------CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred ccCCc--------------------------------------------------hhhHHHHHHHHHHHHHhcCCCceEE
Confidence 88531 223332 5667777777 8999
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHHHH
Q psy17467 229 ETSAKASDNVEKLFMQIAAELMEKLAE 255 (730)
Q Consensus 229 EtSAktG~GVeeLFe~Li~~l~e~~~~ 255 (730)
+|||++|.||+++|++|++.+.+....
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998766544
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=1.1e-21 Score=188.08 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=124.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh------hhhHhhhc-
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR------SITQSYYR- 78 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~------sl~~~~~r- 78 (730)
..+||+++|++|||||||+++|++..+...+.|+++.+.....+.+++ ..+.+|||||++.+. .++..+++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 458999999999999999999999877666667777777788888877 789999999998764 45666665
Q ss_pred -cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 79 -SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 79 -~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+..
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~----------------------------------~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME----------------------------------MGANLLLALNKMDLAK 126 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT----------------------------------TTCCEEEEEECHHHHH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh----------------------------------cCCCEEEEEEhhhccc
Confidence 4999999999875 6666677766532 3567888888888753
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
. +.+. ++++++++.+++++++|||++|.|
T Consensus 127 ~--------------------------------------------------~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 127 S--------------------------------------------------LGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp H--------------------------------------------------TTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred c--------------------------------------------------ccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 1 1122 356788888899999999999999
Q ss_pred hHHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAELM 250 (730)
Q Consensus 238 VeeLFe~Li~~l~ 250 (730)
|+++|+.+++.+.
T Consensus 156 v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 156 IEELKKAISIAVK 168 (188)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=1.5e-21 Score=184.93 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=121.6
Q ss_pred CCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcccc
Q psy17467 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAH 81 (730)
Q Consensus 2 ~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~AD 81 (730)
...+..++|+++|++|||||||+++|+++.+...+.++++.++....+.+++ ..+.+|||||++++..++..++..+|
T Consensus 3 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 80 (178)
T 2lkc_A 3 HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTD 80 (178)
T ss_dssp TTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCC
T ss_pred CcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCC
Confidence 3445678999999999999999999999998887777777677677778888 45789999999999999989999999
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
++|+|||++++...+ +++.+.... ..+.|+++|+||+|+.+....
T Consensus 81 ~~i~v~d~~~~~~~~----~~~~l~~~~-------------------------------~~~~p~ilv~nK~Dl~~~~~~ 125 (178)
T 2lkc_A 81 IVILVVAADDGVMPQ----TVEAINHAK-------------------------------AANVPIIVAINKMDKPEANPD 125 (178)
T ss_dssp EEEEEEETTCCCCHH----HHHHHHHHG-------------------------------GGSCCEEEEEETTTSSCSCHH
T ss_pred EEEEEEECCCCCcHH----HHHHHHHHH-------------------------------hCCCCEEEEEECccCCcCCHH
Confidence 999999999864332 223332211 146788999999998642100
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCCCChH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKASDNVE 239 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG~GVe 239 (730)
. . . .. + ++...++..++ +++++|||++|.||+
T Consensus 126 ~--~--------------------~---------------~~--~-------~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 159 (178)
T 2lkc_A 126 R--V--------------------M---------------QE--L-------MEYNLVPEEWGGDTIFCKLSAKTKEGLD 159 (178)
T ss_dssp H--H--------------------H---------------HH--H-------TTTTCCBTTTTSSEEEEECCSSSSHHHH
T ss_pred H--H--------------------H---------------HH--H-------HhcCcChhHcCCcccEEEEecCCCCCHH
Confidence 0 0 0 00 0 00001122233 689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17467 240 KLFMQIAAELME 251 (730)
Q Consensus 240 eLFe~Li~~l~e 251 (730)
++|++|++.+..
T Consensus 160 ~l~~~l~~~~~~ 171 (178)
T 2lkc_A 160 HLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 999999987743
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.86 E-value=1.8e-21 Score=205.69 Aligned_cols=166 Identities=19% Similarity=0.286 Sum_probs=129.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh-----hhhhHhhhc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFP---PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF-----RSITQSYYR 78 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~---~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~-----~sl~~~~~r 78 (730)
.+||+++|++|||||||+++|+++... ..+.+|++.++. .+.+++ .+.+++|||||++++ ..++..+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 589999999999999999999987332 235566665444 455544 588999999999988 678889999
Q ss_pred cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
++|++|+|||++++.+|+++..|...+..... ..++.|+++||||+|+.+.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~-----------------------------~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRK-----------------------------YSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH-----------------------------HCTTCEEEEEEECGGGSCH
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHH-----------------------------hCCCCeEEEEEecccccch
Confidence 99999999999999999999888776654321 1267899999999999753
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC---CeEEEEecCCC
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD---MYYLETSAKAS 235 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg---~~fvEtSAktG 235 (730)
+..... ..+..++++++++.+| ++|++|||++
T Consensus 131 ~~r~~~--------------------------------------------~~v~~~~~~~~~~~~g~~~~~~~~tSa~~- 165 (307)
T 3r7w_A 131 DKREEL--------------------------------------------FQIMMKNLSETSSEFGFPNLIGFPTSIWD- 165 (307)
T ss_dssp HHHHHH--------------------------------------------HHHHHHHHHHHHHTTTCCSCEEEECCTTS-
T ss_pred hhhhHH--------------------------------------------HHHHHHHHHHHHHHcCCCCeEEEEeeecC-
Confidence 221000 0145678899999998 7999999999
Q ss_pred CChHHHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAAEL 249 (730)
Q Consensus 236 ~GVeeLFe~Li~~l 249 (730)
.|+.++|..+++.+
T Consensus 166 ~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 166 ESLYKAWSQIVCSL 179 (307)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHH
Confidence 89999999988754
No 112
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.86 E-value=2e-22 Score=216.19 Aligned_cols=168 Identities=20% Similarity=0.269 Sum_probs=124.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh---hhHhhhccccE
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPP---GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS---ITQSYYRSAHA 82 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~---~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s---l~~~~~r~ADa 82 (730)
||+++|+.|||||||++++.++.++. .+.||+|.++.. + + ..+.++||||+|+++|.. .+..|+++|++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 69999999999999999988664432 356888877643 2 2 348899999999999964 46899999999
Q ss_pred EEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHH
Q psy17467 83 LILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVL 162 (730)
Q Consensus 83 IILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~ 162 (730)
+|+|||++++ .++.+..|.+.+.... ...+++|++++|||+|+.+++...
T Consensus 76 ~IlV~Ditd~-~~~~~~~l~~~l~~~~-----------------------------~~~~~ipillvgNK~DL~~~~~R~ 125 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAITNLAMIIEYAY-----------------------------KVNPSINIEVLIHKVDGLSEDFKV 125 (331)
T ss_dssp EEEECCCSSC-TTHHHHHHHHHHHHHH-----------------------------HHCTTCEEEEECCCCCSSCSHHHH
T ss_pred EEEEEECCch-HHHHHHHHHHHHHHHh-----------------------------hcCCCCcEEEEEECcccCchhhhh
Confidence 9999999998 3333333322222111 012678999999999997533210
Q ss_pred HHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHh----cCCeEEEEecCCCCCh
Q psy17467 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR----HDMYYLETSAKASDNV 238 (730)
Q Consensus 163 ~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~----lg~~fvEtSAktG~GV 238 (730)
. ..|+|+.++++++|+. +++.|+||||++ .||
T Consensus 126 ~-------------------------------------------~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV 161 (331)
T 3r7w_B 126 D-------------------------------------------AQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSI 161 (331)
T ss_dssp H-------------------------------------------HHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHH
T ss_pred h-------------------------------------------HHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcH
Confidence 0 1256777888999986 689999999998 599
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17467 239 EKLFMQIAAELMEKLAE 255 (730)
Q Consensus 239 eeLFe~Li~~l~e~~~~ 255 (730)
.++|..+++.+......
T Consensus 162 ~eAFs~iv~~li~~~~~ 178 (331)
T 3r7w_B 162 YEAFSRIVQKLIPELSF 178 (331)
T ss_dssp HHHHHHHHTTSSTTHHH
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 99999999887654433
No 113
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=5.9e-22 Score=221.38 Aligned_cols=168 Identities=22% Similarity=0.363 Sum_probs=125.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaII 84 (730)
...+||+|+|++|||||||+++|+++.+.. +.||++.++ ..+.+++ +.+.||||+|++.+..++..+++++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 356999999999999999999999988654 557887444 3455555 78999999999999999999999999999
Q ss_pred EEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHH
Q psy17467 85 LVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLAC 164 (730)
Q Consensus 85 LVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~ 164 (730)
+|||++++.+|+.+..|+.++.+.. ...+.|++||+||+|+.+....
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~p~ilv~NK~Dl~~~~~~--- 441 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDR------------------------------EMRDAIILIFANKQDLPDAMKP--- 441 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSG------------------------------GGTTCEEEEEEECCSSSSCCCH---
T ss_pred EEEECcchhHHHHHHHHHHHHhhhh------------------------------hcCCCcEEEEEECCCCCcCCCH---
Confidence 9999999999999999988875432 1146788889999998531100
Q ss_pred HHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHH
Q psy17467 165 LLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 165 l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
+.+....+...+...++++++|||++|.||+++|++
T Consensus 442 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 477 (497)
T 3lvq_E 442 --------------------------------------------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 477 (497)
T ss_dssp --------------------------------------------HHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred --------------------------------------------HHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHH
Confidence 000000001111234567999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17467 245 IAAELMEKLA 254 (730)
Q Consensus 245 Li~~l~e~~~ 254 (730)
|.+.+.++..
T Consensus 478 l~~~~~~~~~ 487 (497)
T 3lvq_E 478 LTSNYKSKLA 487 (497)
T ss_dssp HHHHCC----
T ss_pred HHHHHHhcCC
Confidence 9987744433
No 114
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.6e-22 Score=213.33 Aligned_cols=163 Identities=22% Similarity=0.359 Sum_probs=119.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
..+||+|+|++|||||||+++|+++.+...+ ||++..+ ..+..++ +.++||||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3479999999999999999999998876543 6776443 4455555 789999999999999999999999999999
Q ss_pred EeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHH
Q psy17467 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACL 165 (730)
Q Consensus 86 VyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l 165 (730)
|||++++.+|+.+..|+..+.... ..++.|++||+||+|+.+....
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~------------------------------~~~~~piilV~NK~Dl~~~~~~---- 284 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAED------------------------------ELRDAVLLVFANKQDLPNAMNA---- 284 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCG------------------------------GGTTCEEEEEEECTTSTTCCCH----
T ss_pred EEECCchHHHHHHHHHHHHHHhhh------------------------------ccCCCeEEEEEECccCCcccCH----
Confidence 999999999999988887765422 1257888999999998642100
Q ss_pred HHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHH
Q psy17467 166 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245 (730)
Q Consensus 166 ~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~L 245 (730)
..+..+.+...+...+++|++|||++|.||+++|+.|
T Consensus 285 -------------------------------------------~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 285 -------------------------------------------AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp -------------------------------------------HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 0000111111122345689999999999999999999
Q ss_pred HHHHH
Q psy17467 246 AAELM 250 (730)
Q Consensus 246 i~~l~ 250 (730)
++.+.
T Consensus 322 ~~~l~ 326 (329)
T 3o47_A 322 SNQLR 326 (329)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98774
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.85 E-value=3.3e-21 Score=184.37 Aligned_cols=164 Identities=22% Similarity=0.290 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC-----------chhhhhhhHhh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG-----------QERFRSITQSY 76 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG-----------~e~~~sl~~~~ 76 (730)
+||+++|++|||||||+++|+++.+...+.|+++... ..+.++ .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999998887777665433 333344 489999999 67788888888
Q ss_pred hcc-ccEEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 77 YRS-AHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 77 ~r~-ADaIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
++. ++++++|||+.|..+|+++ ..|...-. .+...++.... ...+.|+++|+||+|
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~-----------------~~~~~~~~~~~-----~~~~~piilv~nK~D 133 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGE-----------------IPIDVEFYQFL-----RELDIPTIVAVNKLD 133 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTC-----------------CCHHHHHHHHH-----HHTTCCEEEEEECGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCc-----------------cHHHHHHHHHH-----HhcCCceEEEeehHh
Confidence 988 9999999999999999887 56765300 00000000000 014567777888777
Q ss_pred cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCe-------E
Q psy17467 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMY-------Y 227 (730)
Q Consensus 155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~-------f 227 (730)
+.+. + .++++++++.++++ +
T Consensus 134 l~~~--------------------------------------------------~---~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2cxx_A 134 KIKN--------------------------------------------------V---QEVINFLAEKFEVPLSEIDKVF 160 (190)
T ss_dssp GCSC--------------------------------------------------H---HHHHHHHHHHHTCCGGGHHHHE
T ss_pred ccCc--------------------------------------------------H---HHHHHHHHHHhhhhhhccCCcE
Confidence 7421 1 45677888888864 7
Q ss_pred EEEecCCCCChHHHHHHHHHHHHHH
Q psy17467 228 LETSAKASDNVEKLFMQIAAELMEK 252 (730)
Q Consensus 228 vEtSAktG~GVeeLFe~Li~~l~e~ 252 (730)
++|||++|.||+++|+++++.+.+.
T Consensus 161 ~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 161 IPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHhcchh
Confidence 9999999999999999999988553
No 116
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=6.3e-21 Score=183.85 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=109.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhhhhH
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG----------QERFRSITQ 74 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG----------~e~~~sl~~ 74 (730)
+..+||+|+|++|||||||+++|+++.+...+.++.+.+.......+++ .+.+||||| ++.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 3468999999999999999999999887666666666555445555554 589999999 777888888
Q ss_pred hhhccc---cEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467 75 SYYRSA---HALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD 151 (730)
Q Consensus 75 ~~~r~A---DaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN 151 (730)
.+++.+ |++++|+|++++.++.+.. ++..+.. .+.|+++|+|
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----------------------------------~~~p~i~v~n 142 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----------------------------------YGIPVIVIAT 142 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----------------------------------TTCCEEEEEE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----------------------------------cCCCEEEEEE
Confidence 888887 9999999999988887642 2222211 3568888899
Q ss_pred CCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHH-HHHhcCCeEEEE
Q psy17467 152 KTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED-FAKRHDMYYLET 230 (730)
Q Consensus 152 K~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~-lak~lg~~fvEt 230 (730)
|+|+.+..... ...+++++ ++...++++++|
T Consensus 143 K~Dl~~~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 174 (195)
T 1svi_A 143 KADKIPKGKWD------------------------------------------------KHAKVVRQTLNIDPEDELILF 174 (195)
T ss_dssp CGGGSCGGGHH------------------------------------------------HHHHHHHHHHTCCTTSEEEEC
T ss_pred CcccCChHHHH------------------------------------------------HHHHHHHHHHcccCCCceEEE
Confidence 99986422100 00123332 444457899999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q psy17467 231 SAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 231 SAktG~GVeeLFe~Li~~l 249 (730)
||++|.||+++|++|.+.+
T Consensus 175 Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 175 SSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred EccCCCCHHHHHHHHHHHh
Confidence 9999999999999998765
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=6.4e-21 Score=183.06 Aligned_cols=152 Identities=18% Similarity=0.259 Sum_probs=114.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh------h--hHhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS------I--TQSYY 77 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s------l--~~~~~ 77 (730)
.+||+++|++|||||||+++|++..+. ....++.+.++....+.+++ ..+.+|||||+.++.. + ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 479999999999999999999987653 33445666677778888888 4589999999864321 1 12468
Q ss_pred ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
+++|++|+|||++++.+++. ..|++.+.... ..+.|+++|+||+|+.+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-------------------------------~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-------------------------------PAKLPITVVRNKADITG 129 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-------------------------------CTTCCEEEEEECHHHHC
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-------------------------------ccCCCEEEEEECccCCc
Confidence 99999999999999999874 46877775432 14678888889888742
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
.. . .++...++++++|||++|.|
T Consensus 130 ~~---------------------------------------------------~------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 130 ET---------------------------------------------------L------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp CC---------------------------------------------------C------EEEEETTEEEEECCTTTCTT
T ss_pred ch---------------------------------------------------h------hhhhccCCceEEEeCCCCCC
Confidence 00 0 01122467899999999999
Q ss_pred hHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAEL 249 (730)
Q Consensus 238 VeeLFe~Li~~l 249 (730)
|+++|+.|.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998766
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=2e-20 Score=173.90 Aligned_cols=150 Identities=20% Similarity=0.165 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh-------hhhhhHhhhcc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER-------FRSITQSYYRS 79 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~-------~~sl~~~~~r~ 79 (730)
.||+++|++|||||||+++|.+..+. ....++.+.+.....+.+++ ..+.+|||||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999988754 33345555566677777777 4789999999876 34456678899
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhh
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e 159 (730)
+|++|+|||++++.+... .|+..+... .+.|+++|+||+|+.+..
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~---------------------------------~~~p~ilv~nK~Dl~~~~ 124 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR---------------------------------KGKPVILVATKVDDPKHE 124 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH---------------------------------HTCCEEEEEECCCSGGGG
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh---------------------------------cCCCEEEEEECcccccch
Confidence 999999999998755432 333332211 356788889999986311
Q ss_pred HHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCCh
Q psy17467 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDNV 238 (730)
Q Consensus 160 ~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~GV 238 (730)
+++++++ .+++ ++++|||++|.||
T Consensus 125 ------------------------------------------------------~~~~~~~-~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 125 ------------------------------------------------------LYLGPLY-GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp ------------------------------------------------------GGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred ------------------------------------------------------HhHHHHH-hCCCCCeEEEecccCCCh
Confidence 1223344 5676 7999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 239 EKLFMQIAAEL 249 (730)
Q Consensus 239 eeLFe~Li~~l 249 (730)
+++|+++++.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.82 E-value=9.2e-21 Score=214.44 Aligned_cols=161 Identities=22% Similarity=0.342 Sum_probs=121.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEE------EEe--CCeEEEEEEEeCCCchhhhhhhHhh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKT------VEI--NNERIKLQIWDTAGQERFRSITQSY 76 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~------i~v--dg~~v~LqLwDTpG~e~~~sl~~~~ 76 (730)
...+||+++|++|||||||+++++++.+...+.||+|.++.... +.+ ++..+.+.+|||||++.+..+...+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 45699999999999999999999999998888899987776552 222 3346889999999999999999999
Q ss_pred hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
++.+|++|+|||+++ ++.+..|+.++.... ++.|+++|+||+|+.
T Consensus 119 l~~~d~ii~V~D~s~---~~~~~~~~~~l~~~~--------------------------------~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRT---DSNKHYWLRHIEKYG--------------------------------GKSPVIVVMNKIDEN 163 (535)
T ss_dssp HHSSEEEEEEECGGG---GGGHHHHHHHHHHHS--------------------------------SSCCEEEEECCTTTC
T ss_pred ccCCcEEEEEEeCCC---chhHHHHHHHHHHhC--------------------------------CCCCEEEEEECCCcc
Confidence 999999999999975 477788999887653 467888888888885
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD 236 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~ 236 (730)
+ .+.+..+++++++...++++++|||++|.
T Consensus 164 ~--------------------------------------------------~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 164 P--------------------------------------------------SYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp T--------------------------------------------------TCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred c--------------------------------------------------ccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 2 24566788889999999999999999999
Q ss_pred ChHHHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAELM 250 (730)
Q Consensus 237 GVeeLFe~Li~~l~ 250 (730)
||+++|+.+.+.+.
T Consensus 194 gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 194 GVESIAKSLKSAVL 207 (535)
T ss_dssp -CTTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998773
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.82 E-value=4.8e-20 Score=190.58 Aligned_cols=155 Identities=21% Similarity=0.166 Sum_probs=120.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh------hhHhhh-
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS------ITQSYY- 77 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s------l~~~~~- 77 (730)
...+||+++|++|||||||+|+|++..+.....|.++.+.....+..++ ..+.+|||||...+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3468999999999999999999999887666667777677666776666 7899999999987654 335565
Q ss_pred -ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 78 -RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 78 -r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
..+|++|+|+|+++.++. ..|...+.. .+.|+++|+||+|+.
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----------------------------------~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE----------------------------------MEKKVILAMTAIDEA 123 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT----------------------------------TTCCEEEEEECHHHH
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh----------------------------------cCCCEEEEEECcCCC
Confidence 589999999999986443 335554432 357888888888885
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASD 236 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~ 236 (730)
+. +.+. .++.++++.+|+++++|||++|.
T Consensus 124 ~~--------------------------------------------------~~i~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 124 KK--------------------------------------------------TGMK-IDRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HH--------------------------------------------------TTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred Cc--------------------------------------------------cchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence 31 1222 24678889999999999999999
Q ss_pred ChHHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAEL 249 (730)
Q Consensus 237 GVeeLFe~Li~~l 249 (730)
||+++|+.+.+.+
T Consensus 153 gi~el~~~i~~~~ 165 (258)
T 3a1s_A 153 GLEELKEKIVEYA 165 (258)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=4.2e-20 Score=176.99 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=114.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC----------chhhhhhhH
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG----------QERFRSITQ 74 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG----------~e~~~sl~~ 74 (730)
...+||+|+|++|||||||+++|+++.+. .+.++.+.+........+. .+.+||||| ++.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 45689999999999999999999988743 3335555444343333333 478999999 677778888
Q ss_pred hhhccc---cEEEEEeecCCCCchhhh--HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEe
Q psy17467 75 SYYRSA---HALILVYDISCQPTFDCL--TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALA 149 (730)
Q Consensus 75 ~~~r~A---DaIILVyDvtd~eSfe~L--~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLV 149 (730)
.+++.+ |++++|+|+++..+.... ..|+.. .+.|+++|
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------------------------------------~~~p~i~v 139 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------------------------------------LNIPFTIV 139 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------------------------------------TTCCEEEE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------------------------------------cCCCEEEE
Confidence 888876 999999999886554432 223322 25688889
Q ss_pred ccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC-CeEE
Q psy17467 150 SDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYL 228 (730)
Q Consensus 150 GNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg-~~fv 228 (730)
+||+|+.+... +.+..+++++++...+ ++++
T Consensus 140 ~nK~Dl~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 140 LTKMDKVKMSE------------------------------------------------RAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp EECGGGSCGGG------------------------------------------------HHHHHHHHHHHHHSSCCSCEE
T ss_pred EEChhcCChHH------------------------------------------------HHHHHHHHHHHHhhcCCCceE
Confidence 99999864221 1223456677777644 7899
Q ss_pred EEecCCCCChHHHHHHHHHHHH
Q psy17467 229 ETSAKASDNVEKLFMQIAAELM 250 (730)
Q Consensus 229 EtSAktG~GVeeLFe~Li~~l~ 250 (730)
+|||++|.||+++|+++.+.+.
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999998773
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.81 E-value=3.7e-20 Score=193.37 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=114.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh------hhhHhhhc-
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR------SITQSYYR- 78 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~------sl~~~~~r- 78 (730)
..+||+++|++|||||||+|+|++........|.++.+.... .++. .+.+++|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 358999999999999999999999876666667655444333 3444 4679999999998775 45667776
Q ss_pred -cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 79 -SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 79 -~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
.+|++|+|+|+++.++ ...|..++.. .+.|+++|+||+|+.+
T Consensus 79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~----------------------------------~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 79 QRADSILNVVDATNLER---NLYLTTQLIE----------------------------------TGIPVTIALNMIDVLD 121 (272)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHH----------------------------------TCSCEEEEEECHHHHH
T ss_pred CCCCEEEEEecCCchHh---HHHHHHHHHh----------------------------------cCCCEEEEEEChhhCC
Confidence 6999999999987533 3445555432 3567888888888753
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
. +.+. .++..+++.+|+++++|||++|.|
T Consensus 122 ~--------------------------------------------------~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 122 G--------------------------------------------------QGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp H--------------------------------------------------TTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred c--------------------------------------------------CCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 1 1222 356788889999999999999999
Q ss_pred hHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAEL 249 (730)
Q Consensus 238 VeeLFe~Li~~l 249 (730)
|+++|+.+++.+
T Consensus 151 i~el~~~i~~~~ 162 (272)
T 3b1v_A 151 VDQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH
Confidence 999999997643
No 123
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.79 E-value=8.6e-20 Score=188.60 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----------hhHhhh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----------ITQSYY 77 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----------l~~~~~ 77 (730)
.+|+++|.+|||||||+|+|++..+.....|+++.+.....+.+++ ..+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 3799999999999999999999887777778888888888888888 4799999999877653 456677
Q ss_pred --ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467 78 --RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL 155 (730)
Q Consensus 78 --r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL 155 (730)
+++|++|+|+|+++.+++..+..|+.+ .+.|+++|+||+|+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~-------------------------------------~~~pvilv~NK~Dl 122 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFE-------------------------------------LGKPVVVALNMMDI 122 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTT-------------------------------------SCSCEEEEEECHHH
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHH-------------------------------------cCCCEEEEEEChhc
Confidence 899999999999985444333222111 35788888899888
Q ss_pred chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC
Q psy17467 156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS 235 (730)
Q Consensus 156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG 235 (730)
.+.. .+ ......+++.+|+++++|||++|
T Consensus 123 ~~~~--------------------------------------------------~~-~~~~~~l~~~lg~~vi~~SA~~g 151 (256)
T 3iby_A 123 AEHR--------------------------------------------------GI-SIDTEKLESLLGCSVIPIQAHKN 151 (256)
T ss_dssp HHHT--------------------------------------------------TC-EECHHHHHHHHCSCEEECBGGGT
T ss_pred CCcC--------------------------------------------------Cc-HHHHHHHHHHcCCCEEEEECCCC
Confidence 5311 11 12345678888999999999999
Q ss_pred CChHHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAAE 248 (730)
Q Consensus 236 ~GVeeLFe~Li~~ 248 (730)
.||+++|+.+.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998753
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.78 E-value=5.8e-19 Score=182.48 Aligned_cols=154 Identities=23% Similarity=0.198 Sum_probs=120.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh------hhHhhh--c
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS------ITQSYY--R 78 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s------l~~~~~--r 78 (730)
.+||+++|++|||||||+++|++..+.....|+++.+.....+.+++ ..+.+|||||...+.. +...++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 57999999999999999999999888777778888888888888888 4599999999887665 556666 6
Q ss_pred cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
++|++|+|+|+++. +....|...+... ...|+++|+||+|+.+.
T Consensus 81 ~~d~vi~v~D~~~~---~~~~~~~~~~~~~---------------------------------~~~p~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 81 NADVIVDIVDSTCL---MRNLFLTLELFEM---------------------------------EVKNIILVLNKFDLLKK 124 (271)
T ss_dssp CCSEEEEEEEGGGH---HHHHHHHHHHHHT---------------------------------TCCSEEEEEECHHHHHH
T ss_pred CCcEEEEEecCCcc---hhhHHHHHHHHhc---------------------------------CCCCEEEEEEChhcCcc
Confidence 89999999999874 2223333333221 12688888899988542
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCCh
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV 238 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GV 238 (730)
. .+.. +...+++.+|+++++|||++|.|+
T Consensus 125 ~--------------------------------------------------~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 125 K--------------------------------------------------GAKI-DIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp H--------------------------------------------------TCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred c--------------------------------------------------ccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence 1 1111 267788889999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 239 EKLFMQIAAEL 249 (730)
Q Consensus 239 eeLFe~Li~~l 249 (730)
+++|+.+.+.+
T Consensus 154 ~~l~~~i~~~~ 164 (271)
T 3k53_A 154 EELKRMIALMA 164 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 125
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.78 E-value=9.3e-19 Score=172.79 Aligned_cols=164 Identities=12% Similarity=0.081 Sum_probs=108.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeC-CeEEEEEEEeCCC----------chhhhhhh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIWDTAG----------QERFRSIT 73 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG----------~e~~~sl~ 73 (730)
...+||+|+|.+|||||||+++|++..+.....++.+.+.......+. .....+.|||||| ++.+..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 346899999999999999999999887322222222222223333333 3336789999999 44556666
Q ss_pred Hhhhcc---ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467 74 QSYYRS---AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS 150 (730)
Q Consensus 74 ~~~~r~---ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG 150 (730)
..+++. +|++|+|+|+++..+... ..|+..+.. .+.|+++|+
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~----------------------------------~~~p~i~v~ 151 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP----------------------------------TGKPIHSLL 151 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG----------------------------------GCCCEEEEE
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh----------------------------------cCCCEEEEE
Confidence 777776 788999999998654322 234444321 356888999
Q ss_pred cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HHHHH------hc
Q psy17467 151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDFAK------RH 223 (730)
Q Consensus 151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~lak------~l 223 (730)
||+|+.+...... ..++. +.+.. ..
T Consensus 152 nK~Dl~~~~~~~~------------------------------------------------~~~~~~~~l~~~~~~~~~~ 183 (223)
T 4dhe_A 152 TKCDKLTRQESIN------------------------------------------------ALRATQKSLDAYRDAGYAG 183 (223)
T ss_dssp ECGGGSCHHHHHH------------------------------------------------HHHHHHHHHHHHHHHTCCS
T ss_pred eccccCChhhHHH------------------------------------------------HHHHHHHHHHhhhhcccCC
Confidence 9999865332100 00111 22222 25
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467 224 DMYYLETSAKASDNVEKLFMQIAAELME 251 (730)
Q Consensus 224 g~~fvEtSAktG~GVeeLFe~Li~~l~e 251 (730)
++++++|||++|.||+++|+.|.+.+..
T Consensus 184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 184 KLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 6789999999999999999999988743
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=1.2e-19 Score=178.76 Aligned_cols=154 Identities=16% Similarity=0.257 Sum_probs=108.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcc-
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP---GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS- 79 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~---~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~- 79 (730)
....++|+++|++|||||||+++|++..+.. .+.|+++.++ ..+.+.+|||||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 3456899999999999999999999988765 3445554332 33679999999999998888888887
Q ss_pred ---ccEEEEEeecC-CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467 80 ---AHALILVYDIS-CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL 155 (730)
Q Consensus 80 ---ADaIILVyDvt-d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL 155 (730)
+|++|+|||++ ++.+|+.+..|+.++..... .....+.|+++|+||+|+
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE---------------------------SSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHH---------------------------HHSTTCCCEEEEEECTTS
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhccc---------------------------ccccCCCCEEEEEEchHh
Confidence 99999999999 89999999999888765421 001257889999999998
Q ss_pred chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC
Q psy17467 156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS 235 (730)
Q Consensus 156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG 235 (730)
.+...... -.....+++..++...++.|+++||++|
T Consensus 133 ~~~~~~~~--------------------------------------------~~~~l~~~~~~~~~~~~~~~~~~Sa~~~ 168 (218)
T 1nrj_B 133 FTARPPSK--------------------------------------------IKDALESEIQKVIERRKKSLNEVERKIN 168 (218)
T ss_dssp TTCCCHHH--------------------------------------------HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cccCCHHH--------------------------------------------HHHHHHHHHHHHHHHHhccccccccccc
Confidence 64211000 0001135667777777888999999987
Q ss_pred CC
Q psy17467 236 DN 237 (730)
Q Consensus 236 ~G 237 (730)
.+
T Consensus 169 ~~ 170 (218)
T 1nrj_B 169 EE 170 (218)
T ss_dssp --
T ss_pred cc
Confidence 65
No 127
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.77 E-value=2.1e-19 Score=186.99 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=116.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----------hhHhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----------ITQSY 76 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----------l~~~~ 76 (730)
.++|+++|.+|||||||+|+|++..+.....|+++.+.....+.+++ ..+.+|||||..++.. +...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 48999999999999999999999887777778888788888888777 4678999999877652 23333
Q ss_pred h--ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 77 Y--RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 77 ~--r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
+ +.+|++|+|+|+++.++.. .|...+.. .+.|+++|+||+|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~----------------------------------~~~p~ivv~NK~D 123 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE----------------------------------LGIPCIVALNMLD 123 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHH---HHHHHHHH----------------------------------HTCCEEEEEECHH
T ss_pred HhhcCCCEEEEEecCCChHHHH---HHHHHHHh----------------------------------cCCCEEEEEECcc
Confidence 3 7999999999999844333 33333322 1467888888888
Q ss_pred cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC
Q psy17467 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA 234 (730)
Q Consensus 155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt 234 (730)
+.+.. .+ ......+++.+|+++++|||++
T Consensus 124 l~~~~--------------------------------------------------~~-~~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 124 IAEKQ--------------------------------------------------NI-RIEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHT--------------------------------------------------TE-EECHHHHHHHHTSCEEECCCGG
T ss_pred chhhh--------------------------------------------------hH-HHHHHHHHHhcCCCEEEEEcCC
Confidence 75311 11 1235677888899999999999
Q ss_pred CCChHHHHHHHHHHH
Q psy17467 235 SDNVEKLFMQIAAEL 249 (730)
Q Consensus 235 G~GVeeLFe~Li~~l 249 (730)
|.||+++|+.+.+.+
T Consensus 153 g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 153 GRGIEALKLAIDRYK 167 (274)
T ss_dssp GHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887544
No 128
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.77 E-value=3.2e-18 Score=181.08 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=120.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeC-CeEEEEEEEeCCCchhhh----------hhh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEIN-NERIKLQIWDTAGQERFR----------SIT 73 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vd-g~~v~LqLwDTpG~e~~~----------sl~ 73 (730)
..-.|+++|.+|||||||+|+|++..+.. ...+..+..........+ + ..+.||||||..+.. ...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHHHH
Confidence 45689999999999999999999988753 333444444444455555 5 789999999985433 556
Q ss_pred HhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCC
Q psy17467 74 QSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKT 153 (730)
Q Consensus 74 ~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~ 153 (730)
..+++.+|++|+|+|+++..++++...|++.+.. .+.|+++|+||+
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----------------------------------~~~pvilV~NK~ 132 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----------------------------------LNKPVIVVINKI 132 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----------------------------------GCCCEEEEEECG
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----------------------------------cCCCEEEEEECc
Confidence 6788999999999999999999887777776532 356788888888
Q ss_pred CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEe
Q psy17467 154 DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETS 231 (730)
Q Consensus 154 DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtS 231 (730)
|+.. .+....+....+++.++ +.+++||
T Consensus 133 Dl~~--------------------------------------------------~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 133 DKIG--------------------------------------------------PAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp GGSS--------------------------------------------------SGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred cCCC--------------------------------------------------CHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 8752 11233456677777776 7899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17467 232 AKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 232 AktG~GVeeLFe~Li~~l 249 (730)
|++|.||+++|+.+.+.+
T Consensus 163 A~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 163 ALKGANLDELVKTILKYL 180 (308)
T ss_dssp TTTTBSHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999998766
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.76 E-value=1.2e-17 Score=179.91 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=121.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh---------hhhHhh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFR---------SITQSY 76 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~---------sl~~~~ 76 (730)
..++|+++|.+|||||||+++|++..+.....+..+.+.....+..++ ..+.+|||||..... .....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 457999999999999999999998875443334444445455555555 679999999975421 111234
Q ss_pred hccccEEEEEeecCCCC--chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 77 YRSAHALILVYDISCQP--TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 77 ~r~ADaIILVyDvtd~e--Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
...+|++++|+|++++. +++....|+..+.... .+.|+++|+||.|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--------------------------------~~~piilV~NK~D 291 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--------------------------------KDLPFLVVINKID 291 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--------------------------------TTSCEEEEECCTT
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--------------------------------CCCCEEEEEECcc
Confidence 55799999999999987 6777788888876532 2578888899999
Q ss_pred cchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCC
Q psy17467 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKA 234 (730)
Q Consensus 155 L~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAkt 234 (730)
+.+... .+++.+++...++++++|||++
T Consensus 292 l~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 292 VADEEN----------------------------------------------------IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp TCCHHH----------------------------------------------------HHHHHHHHHHTTCCCEECBTTT
T ss_pred cCChHH----------------------------------------------------HHHHHHHHHhcCCCeEEEeCCC
Confidence 864221 1345566667888999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHH
Q psy17467 235 SDNVEKLFMQIAAELMEKLAE 255 (730)
Q Consensus 235 G~GVeeLFe~Li~~l~e~~~~ 255 (730)
|+||+++|+++.+.+......
T Consensus 320 g~gi~~l~~~i~~~l~~~~~~ 340 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLAEK 340 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhh
Confidence 999999999999988654333
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=5.9e-18 Score=187.18 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh---------hhhhhHhhhc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER---------FRSITQSYYR 78 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~---------~~sl~~~~~r 78 (730)
+|+|||+||||||||+|+|++.... ....|.++.++....+.+++. .+++|||||.+. +...+..+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 7999999999999999999988753 445577777777888888884 579999999764 3445667899
Q ss_pred cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
+||++|+|+|+++..+..+ .|+..+.+. .+.|+++|+||+|+.+.
T Consensus 81 ~ad~il~V~D~~~~~~~~d--~~i~~~l~~---------------------------------~~~p~ilv~NK~D~~~~ 125 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKED--ESLADFLRK---------------------------------STVDTILVANKAENLRE 125 (439)
T ss_dssp TCSEEEEEEETTTCCCHHH--HHHHHHHHH---------------------------------HTCCEEEEEESCCSHHH
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---------------------------------cCCCEEEEEeCCCCccc
Confidence 9999999999998766543 222222211 24678888899887531
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH-HHHHHhcCC-eEEEEecCCCC
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDFAKRHDM-YYLETSAKASD 236 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~-~~lak~lg~-~fvEtSAktG~ 236 (730)
. ..++ .+++ .+|+ .++++||++|.
T Consensus 126 ~-----------------------------------------------------~~~~~~~~~-~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 126 F-----------------------------------------------------EREVKPELY-SLGFGEPIPVSAEHNI 151 (439)
T ss_dssp H-----------------------------------------------------HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred c-----------------------------------------------------HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence 0 0112 3343 4566 68999999999
Q ss_pred ChHHHHHHHHHHHH
Q psy17467 237 NVEKLFMQIAAELM 250 (730)
Q Consensus 237 GVeeLFe~Li~~l~ 250 (730)
|++++|+.+.+.+.
T Consensus 152 gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 152 NLDTMLETIIKKLE 165 (439)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999988773
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.74 E-value=9.2e-18 Score=188.37 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=97.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh--------Hhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT--------QSYY 77 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~--------~~~~ 77 (730)
.+||+|+|.+|||||||+|+|++... .....++++.+.....+.+++ +.+.+|||||..++...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 47999999999999999999998754 345556677777777888888 679999999987765443 3368
Q ss_pred ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
+.||++|+|+|++++.+++.+..+...+... .+.|+++|+||+|+.+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---------------------------------~~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAH---------------------------------PAAKFLTVANKLDRAA 357 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---------------------------------TTSEEEEEEECTTSCT
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhc---------------------------------CCCCEEEEEECcCCCC
Confidence 8999999999999999998654443333211 2568888889988853
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
... .+.+++++...+++++|||++|.|
T Consensus 358 ~~~-----------------------------------------------------~~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 358 NAD-----------------------------------------------------ALIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp TTH-----------------------------------------------------HHHHHHHHHHTSCEEECBTTTTBS
T ss_pred ccc-----------------------------------------------------hhHHHHHhcCCCceEEEEECCCCC
Confidence 211 111334443236899999999999
Q ss_pred hHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAEL 249 (730)
Q Consensus 238 VeeLFe~Li~~l 249 (730)
|+++|++|.+.+
T Consensus 385 I~eL~~~i~~~~ 396 (476)
T 3gee_A 385 IDTLKQHMGDLV 396 (476)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 132
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.72 E-value=3.1e-17 Score=173.49 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=109.8
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--------hhh
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--------FRS 71 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--------~~s 71 (730)
|.+.-...+|+++|.+|||||||+|+|++..+.. ...|..+.+.....+..++ .++.||||||..+ +..
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~ 78 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQ 78 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHH
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHH
Confidence 5555566789999999999999999999988753 3344443333333444444 7899999999865 445
Q ss_pred hhHhhhccccEEEEEeecCCCCchhhhHHHH-HHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEec
Q psy17467 72 ITQSYYRSAHALILVYDISCQPTFDCLTDWL-REIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALAS 150 (730)
Q Consensus 72 l~~~~~r~ADaIILVyDvtd~eSfe~L~~wl-eeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVG 150 (730)
....+++++|++|+|+|++++.+.. ..|+ +.+... .++.|+++|+
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~--------------------------------~~~~p~ilV~ 124 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL--------------------------------VGKVPILLVG 124 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG--------------------------------TTTSCEEEEE
T ss_pred HHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh--------------------------------cCCCCEEEEE
Confidence 5667899999999999999876544 3444 333211 1467888888
Q ss_pred cCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEE
Q psy17467 151 DKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLET 230 (730)
Q Consensus 151 NK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEt 230 (730)
||+|+.+.... + .+.++++ .....+++|
T Consensus 125 NK~Dl~~~~~~-------------------------------------------------~-~~~~~~~--~~~~~~~~i 152 (301)
T 1wf3_A 125 NKLDAAKYPEE-------------------------------------------------A-MKAYHEL--LPEAEPRML 152 (301)
T ss_dssp ECGGGCSSHHH-------------------------------------------------H-HHHHHHT--STTSEEEEC
T ss_pred ECcccCCchHH-------------------------------------------------H-HHHHHHh--cCcCcEEEE
Confidence 88888532110 0 1112222 113479999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q psy17467 231 SAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 231 SAktG~GVeeLFe~Li~~l 249 (730)
||++|.|++++|+.+.+.+
T Consensus 153 SA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 153 SALDERQVAELKADLLALM 171 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTC
T ss_pred eCCCCCCHHHHHHHHHHhc
Confidence 9999999999999987644
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.72 E-value=1e-17 Score=188.30 Aligned_cols=152 Identities=24% Similarity=0.225 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch-hhhh--------hhHhhh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE-RFRS--------ITQSYY 77 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e-~~~s--------l~~~~~ 77 (730)
++|+|+|.||||||||+|+|++.++ .....|+++.++....+.+++ ..+.+|||||.. ++.. ....++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 8999999999999999999998764 345557777777778888887 668999999987 5432 234678
Q ss_pred ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
+.||++|+|+|++++.++++.. +++.+ .+.|+++|+||+|+.+
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l------------------------------------~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI------------------------------------KNKRYLVVINKVDVVE 364 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH------------------------------------TTSSEEEEEEECSSCC
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh------------------------------------cCCCEEEEEECccccc
Confidence 9999999999999998886642 22221 2457778888888742
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
.++.++..+++. .++++++|||++|.|
T Consensus 365 ----------------------------------------------------~~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 365 ----------------------------------------------------KINEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp ----------------------------------------------------CCCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred ----------------------------------------------------ccCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 122344444432 456899999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAELME 251 (730)
Q Consensus 238 VeeLFe~Li~~l~e 251 (730)
|+++|+.|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
No 134
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.70 E-value=1e-16 Score=172.07 Aligned_cols=147 Identities=15% Similarity=0.277 Sum_probs=104.9
Q ss_pred CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC----------CCCchhhhHHHHHHHH
Q psy17467 37 GATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS----------CQPTFDCLTDWLREIE 106 (730)
Q Consensus 37 ~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt----------d~eSfe~L~~wleeI~ 106 (730)
.||+|. ....+.+++ +.+++|||+|+++++++|..|+++++++|+|||++ +..+|++...|++.+.
T Consensus 152 ~~TiGi--~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 152 VPTTGI--IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp CCCCSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred CceeeE--EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 345563 344555565 88999999999999999999999999999999776 4555666666666654
Q ss_pred HHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhh
Q psy17467 107 EYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYL 186 (730)
Q Consensus 107 ~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~ 186 (730)
... .-.++|++|+|||+|+.+.. +.......++|..
T Consensus 228 ~~~------------------------------~~~~~~iiL~~NK~DL~~~k-----i~~~~l~~~fp~y--------- 263 (327)
T 3ohm_A 228 TYP------------------------------WFQNSSVILFLNKKDLLEEK-----IMYSHLVDYFPEY--------- 263 (327)
T ss_dssp TSG------------------------------GGTTCEEEEEEECHHHHHHH-----TTTSCGGGTCTTC---------
T ss_pred hhh------------------------------ccCCceEEEEEECchhhhhh-----hccchHhhhchhc---------
Confidence 321 11578999999999997532 0000111222222
Q ss_pred hcccCCcCCccccccccccccCCCCChHHHHHH----------HHhcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467 187 ASLEGHSNNIHCMARNKIDREDREIPTEVGEDF----------AKRHDMYYLETSAKASDNVEKLFMQIAAELME 251 (730)
Q Consensus 187 ~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l----------ak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e 251 (730)
..+.++.+++.++ +...++.+++|||+++.||+.+|..+.+.+++
T Consensus 264 --------------------~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 264 --------------------DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp --------------------CSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------cCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 2345677888888 34567789999999999999999999998864
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.70 E-value=1.7e-17 Score=178.95 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----hhhhhHhhhc---cc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----FRSITQSYYR---SA 80 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----~~sl~~~~~r---~A 80 (730)
.+|+|+|.+|||||||++++++.......+|..+.+.....+.+++. ..+.||||||..+ +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36899999999999999999987654444444444444455666542 4689999999643 3335555544 59
Q ss_pred cEEEEEeecCC---CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 81 HALILVYDISC---QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 81 DaIILVyDvtd---~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
|++|+|+|+++ +.+++++..|+.++..+.. ...+.|+++|+||+|+.+
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~-----------------------------~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL-----------------------------RLTERPQIIVANKMDMPE 288 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS-----------------------------STTTSCBCBEEECTTSTT
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhh-----------------------------hhcCCCEEEEEECccCCC
Confidence 99999999999 8889999989988865421 113567777777777743
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKAS 235 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG 235 (730)
. .+..+++++.++ +++++|||+++
T Consensus 289 ~------------------------------------------------------~e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 289 A------------------------------------------------------AENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp H------------------------------------------------------HHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred C------------------------------------------------------HHHHHHHHHHhhcCCCEEEEECCCC
Confidence 1 133455666665 68999999999
Q ss_pred CChHHHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAAEL 249 (730)
Q Consensus 236 ~GVeeLFe~Li~~l 249 (730)
.||+++|+.|.+.+
T Consensus 315 ~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 315 EGLRELLFEVANQL 328 (342)
T ss_dssp STTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998877
No 136
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.69 E-value=1.8e-16 Score=171.60 Aligned_cols=139 Identities=16% Similarity=0.221 Sum_probs=103.2
Q ss_pred EEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC----------CCchhhhHHHHHHHHHHhcccceE
Q psy17467 46 IKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC----------QPTFDCLTDWLREIEEYASFKVLR 115 (730)
Q Consensus 46 ~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd----------~eSfe~L~~wleeI~~~~~~~~pi 115 (730)
...+.+++ +.+++|||+|++.++..|..|++++++||+|||+++ ..++++...|++.+....
T Consensus 185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~------ 256 (353)
T 1cip_A 185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK------ 256 (353)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG------
T ss_pred EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc------
Confidence 34455555 889999999999999999999999999999999999 455777777777765421
Q ss_pred EEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCC
Q psy17467 116 VLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNN 195 (730)
Q Consensus 116 VLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~ 195 (730)
.-.++|++|+|||.|+.+..- ....+..++|.+
T Consensus 257 ------------------------~~~~~piiLv~NK~DL~~~ki-----~~~~l~~~fp~~------------------ 289 (353)
T 1cip_A 257 ------------------------WFTDTSIILFLNKKDLFEEKI-----KKSPLTICYPEY------------------ 289 (353)
T ss_dssp ------------------------GGTTSEEEEEEECHHHHHHHH-----TTSCGGGTCTTC------------------
T ss_pred ------------------------cccCCcEEEEEECcCchhhhc-----cccchhhccccc------------------
Confidence 115689999999999964210 000111122211
Q ss_pred ccccccccccccCCCCChHHHHHHHH-----------hcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467 196 IHCMARNKIDREDREIPTEVGEDFAK-----------RHDMYYLETSAKASDNVEKLFMQIAAELME 251 (730)
Q Consensus 196 ~~ivVgNK~DL~~R~Vs~ee~~~lak-----------~lg~~fvEtSAktG~GVeeLFe~Li~~l~e 251 (730)
. ..++.+++.+++. ..++.+++|||++|.||+++|+++.+.+..
T Consensus 290 -----------~-g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 290 -----------A-GSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp -----------C-SCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------C-CCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 1 1367788888886 357789999999999999999999998854
No 137
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.69 E-value=1e-16 Score=163.60 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=65.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCc-ceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh-----------h
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGV-FPPGQGAT-IGVDFMIKTVEINNERIKLQIWDTAGQERFRS-----------I 72 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~-f~~~~~pT-ig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s-----------l 72 (730)
..++|+|+|.+|||||||+++|++.. +...+.++ ++.+.....+.+++ ..+.||||||...+.. .
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999877 55555554 45556666677777 6799999999865422 2
Q ss_pred hHhhhccccEEEEEeecCC
Q psy17467 73 TQSYYRSAHALILVYDISC 91 (730)
Q Consensus 73 ~~~~~r~ADaIILVyDvtd 91 (730)
...+++.+|++|+|+|+++
T Consensus 99 ~~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC
T ss_pred HHhcCCCCcEEEEEEeCCC
Confidence 2336789999999999985
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.69 E-value=1.6e-17 Score=183.98 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=112.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhh-------hHh
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSI-------TQS 75 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl-------~~~ 75 (730)
....++|+|+|..|||||||+++|++..+. ....+.++.+.....+.+.+. ..+.+|||||+.++..+ ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 345689999999999999999999988763 334455556677777777664 27899999999877654 345
Q ss_pred hhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467 76 YYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL 155 (730)
Q Consensus 76 ~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL 155 (730)
+++.+|++|+|+|++. .+....|+..+.. .+.|+++|+||+|+
T Consensus 110 ~l~~aD~vllVvD~~~---~~~~~~~l~~l~~----------------------------------~~~piIvV~NK~Dl 152 (423)
T 3qq5_A 110 VFYRADCGILVTDSAP---TPYEDDVVNLFKE----------------------------------MEIPFVVVVNKIDV 152 (423)
T ss_dssp HHTSCSEEEEECSSSC---CHHHHHHHHHHHH----------------------------------TTCCEEEECCCCTT
T ss_pred HHhcCCEEEEEEeCCC---hHHHHHHHHHHHh----------------------------------cCCCEEEEEeCcCC
Confidence 7889999999999832 2333557666643 25678888888888
Q ss_pred chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCC
Q psy17467 156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKAS 235 (730)
Q Consensus 156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG 235 (730)
.+. +. .+.++++++.+++++++|||++|
T Consensus 153 ~~~--------------------------------------------------~~--~~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 153 LGE--------------------------------------------------KA--EELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp TTC--------------------------------------------------CC--THHHHHSSCCTTCCCCCCSSCCT
T ss_pred CCc--------------------------------------------------cH--HHHHHHHHHHcCCCEEEEECCCC
Confidence 531 11 15667778888999999999999
Q ss_pred CChHHHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAAEL 249 (730)
Q Consensus 236 ~GVeeLFe~Li~~l 249 (730)
.|++++|+.|.+.+
T Consensus 181 ~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 181 KGFDDIGKTISEIL 194 (423)
T ss_dssp TSTTTHHHHHHHHS
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999999877
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.68 E-value=1.8e-17 Score=183.13 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch--------hhhhhhHhhhc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQE--------RFRSITQSYYR 78 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e--------~~~sl~~~~~r 78 (730)
.+|+++|++|||||||+|+|++..+.. ...|.++.+.....+.+++ ..+.+|||+|.+ .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 689999999999999999999876642 2334444344444444444 679999999985 56667778899
Q ss_pred cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
.||++|+|+|++++.++.+ .|+..+.+ ..+.|+++|+||+|+.+.
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~---------------------------------~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY---------------------------------RTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT---------------------------------TCCSCEEEEEECCCC---
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH---------------------------------HcCCCEEEEEECccCccc
Confidence 9999999999999877654 23333221 146788999999998531
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCCCC
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKASDN 237 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG~G 237 (730)
.. . +.++. .+|+ .++++||++|.|
T Consensus 127 ~~-------------------------------------------------~-----~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 127 RA-------------------------------------------------N-----IYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp ---------------------------------------------------C-----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred hh-------------------------------------------------h-----HHHHH-HcCCCCeEEEeCcCCCC
Confidence 10 0 00111 2354 689999999999
Q ss_pred hHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAEL 249 (730)
Q Consensus 238 VeeLFe~Li~~l 249 (730)
++++|+.+.+.+
T Consensus 152 v~~L~~~i~~~l 163 (436)
T 2hjg_A 152 LGDLLDAVAEHF 163 (436)
T ss_dssp HHHHHHHHHHTG
T ss_pred hHHHHHHHHHhc
Confidence 999999998766
No 140
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.67 E-value=5.8e-16 Score=156.32 Aligned_cols=168 Identities=18% Similarity=0.116 Sum_probs=110.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC--cceeeEEEEEEEeCCeEEEEEEEeCCCc-----------hhhhh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGA--TIGVDFMIKTVEINNERIKLQIWDTAGQ-----------ERFRS 71 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~p--Tig~d~~~~~i~vdg~~v~LqLwDTpG~-----------e~~~s 71 (730)
...+||+|+|++|||||||+|++++..+.....+ +++.+.....+.+++ ..+.||||||. ..+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4568999999999999999999999888666555 455556666777777 57899999994 33444
Q ss_pred hhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467 72 ITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD 151 (730)
Q Consensus 72 l~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN 151 (730)
....+++.+|++|+|+|+++..+ ....|+..+..... .....|+++|+|
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~-----------------------------~~~~~~~iiv~n 153 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFG-----------------------------ERARSFMILIFT 153 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHH-----------------------------HHHGGGEEEEEE
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhh-----------------------------hhccceEEEEEe
Confidence 45556778899999999986444 22345555433221 012357888899
Q ss_pred CCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEe
Q psy17467 152 KTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETS 231 (730)
Q Consensus 152 K~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtS 231 (730)
|+|+.+..... +. -....+..+++++..|..|+.++
T Consensus 154 K~D~~~~~~~~------------------------------------------~~--i~~~~~~l~~l~~~~~~~~~~~~ 189 (239)
T 3lxx_A 154 RKDDLGDTNLH------------------------------------------DY--LREAPEDIQDLMDIFGDRYCALN 189 (239)
T ss_dssp CGGGC--------------------------------------------------------CHHHHHHHHHHSSSEEECC
T ss_pred CCccCCcccHH------------------------------------------HH--HHhchHHHHHHHHHcCCEEEEEE
Confidence 99986432100 00 00112467888888898888888
Q ss_pred cCCC-----CChHHHHHHHHHHH
Q psy17467 232 AKAS-----DNVEKLFMQIAAEL 249 (730)
Q Consensus 232 AktG-----~GVeeLFe~Li~~l 249 (730)
+..+ .||.++|+.+.+.+
T Consensus 190 ~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 190 NKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHHH
Confidence 7654 67888888777665
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.66 E-value=5e-17 Score=181.76 Aligned_cols=150 Identities=21% Similarity=0.197 Sum_probs=102.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH--------hhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ--------SYY 77 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~--------~~~ 77 (730)
.+||+++|.+|||||||+|+|++..+. ....++++.+.....+.+++ ..+.+|||||..++....+ .++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 479999999999999999999987543 44456666666666777888 5689999999866543332 357
Q ss_pred ccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 78 RSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
+.+|++|+|+|++++.+++. ..|+..+ .+.|+++|+||+|+.+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------------------------------------~~~piivV~NK~Dl~~ 344 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------------------------------------KHRPLILVMNKIDLVE 344 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------------------------------------TTSCEEEEEECTTSSC
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------------------------------------cCCcEEEEEECCCCCc
Confidence 89999999999999877655 3444443 2257888899999864
Q ss_pred hhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCC
Q psy17467 158 DEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN 237 (730)
Q Consensus 158 ~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~G 237 (730)
... +. ..++++ .+.++++|||++|.|
T Consensus 345 ~~~--------------------------------------------------~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 345 KQL--------------------------------------------------IT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp GGG--------------------------------------------------ST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred chh--------------------------------------------------hH--HHHHhc--cCCcEEEEECCCCCC
Confidence 211 00 000001 356899999999999
Q ss_pred hHHHHHHHHHHH
Q psy17467 238 VEKLFMQIAAEL 249 (730)
Q Consensus 238 VeeLFe~Li~~l 249 (730)
|+++|+.|.+.+
T Consensus 371 i~eL~~~i~~~~ 382 (462)
T 3geh_A 371 IDSLETAILEIV 382 (462)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 142
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.6e-16 Score=169.15 Aligned_cols=247 Identities=17% Similarity=0.099 Sum_probs=174.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh----hh---Hhhhcc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS----IT---QSYYRS 79 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s----l~---~~~~r~ 79 (730)
..+|++||.||||||||+|++++.......+|..+.+.....+.+++ .+++++||||..+..+ +. -..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 35899999999999999999999887777778888899999999998 6789999999643221 11 234789
Q ss_pred ccEEEEEeecCCCCchhhhHHHHHHHHHHh--cccceEEEEecc----------------CchhhHHHHHhhhcccccCC
Q psy17467 80 AHALILVYDISCQPTFDCLTDWLREIEEYA--SFKVLRVLVGGT----------------SGLKIVNEMASAAGLLCTVD 141 (730)
Q Consensus 80 ADaIILVyDvtd~eSfe~L~~wleeI~~~~--~~~~piVLVg~k----------------~dl~~~~~i~~~~g~~~~~~ 141 (730)
||++++|+|++++.. +......++.... -...|..++.++ .+.+.++.++..+.+
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l----- 222 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI----- 222 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC-----
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc-----
Confidence 999999999987632 2222223333221 113344445455 234556667766666
Q ss_pred CCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH
Q psy17467 142 PALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK 221 (730)
Q Consensus 142 ~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak 221 (730)
.+.|+++++| ++..+- ..........+.|.+++.||+|. .+.++.+.+.+
T Consensus 223 t~kpv~~~~n-v~eddl-------------------------~d~~~~~~~~~~p~i~v~nKid~----~~~eele~l~~ 272 (376)
T 4a9a_A 223 NSAEIAFRCD-ATVDDL-------------------------IDVLEASSRRYMPAIYVLNKIDS----LSIEELELLYR 272 (376)
T ss_dssp CSEEEEECSC-CCHHHH-------------------------HHHHTTTTCEEECEEEEEECGGG----SCHHHHHHHTT
T ss_pred cCCCeeeccc-CCHHHH-------------------------HHHHHHHHhhccceEEEEecccc----cCHHHHHHHhc
Confidence 4557776665 222210 11122345678899999999996 34455555443
Q ss_pred hcCCeEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccc-hhhHHHHHH
Q psy17467 222 RHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDK-SLESCIKQI 300 (730)
Q Consensus 222 ~lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~-~~~~~~~~~ 300 (730)
. -.++++|+..+.|++++.+.+++.+ .++++|++.+....++.-|..+..+ ++..+++..
T Consensus 273 ~--~~~~~is~~~e~gLd~Li~~~y~~L-----------------~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ 333 (376)
T 4a9a_A 273 I--PNAVPISSGQDWNLDELLQVMWDRL-----------------NLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQ 333 (376)
T ss_dssp S--TTEEECCTTTCTTHHHHHHHHHHHH-----------------CCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHH
T ss_pred c--cchhhhhhhhcccchhHHHHHHHHc-----------------CCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHH
Confidence 2 2478999999999999999999998 8999999999888888888777655 778888876
Q ss_pred -hhcCCCCceee
Q psy17467 301 -VKKFPNIDIKS 311 (730)
Q Consensus 301 -~k~~p~~~~~~ 311 (730)
|+++...|...
T Consensus 334 ih~d~~~~F~~a 345 (376)
T 4a9a_A 334 IHKSLVDDFRNA 345 (376)
T ss_dssp HCGGGGGGEEEE
T ss_pred HHHHHHHhhhHh
Confidence 88888877644
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.66 E-value=2.9e-15 Score=163.95 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=114.1
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEE---------------------e---CCeEEEEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVE---------------------I---NNERIKLQ 59 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~---------------------v---dg~~v~Lq 59 (730)
++..+||+++|.+|||||||+++|++...... .+ +....+. + ......+.
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS 78 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccceEE
Confidence 45669999999999999999999997543321 11 1111110 0 11236899
Q ss_pred EEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhccccc
Q psy17467 60 IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCT 139 (730)
Q Consensus 60 LwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~ 139 (730)
+|||||+++|......++..+|++|+|+|+++..++....+|+..+....
T Consensus 79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~------------------------------ 128 (403)
T 3sjy_A 79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG------------------------------ 128 (403)
T ss_dssp EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT------------------------------
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC------------------------------
Confidence 99999999999988999999999999999999888888888877664321
Q ss_pred CCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH
Q psy17467 140 VDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF 219 (730)
Q Consensus 140 ~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l 219 (730)
..|+++|+||+|+.+.+.... ..++..++
T Consensus 129 ---~~~iivviNK~Dl~~~~~~~~------------------------------------------------~~~~i~~~ 157 (403)
T 3sjy_A 129 ---VKNLIIVQNKVDVVSKEEALS------------------------------------------------QYRQIKQF 157 (403)
T ss_dssp ---CCCEEEEEECGGGSCHHHHHH------------------------------------------------HHHHHHHH
T ss_pred ---CCCEEEEEECccccchHHHHH------------------------------------------------HHHHHHHH
Confidence 247888899999875332100 11223333
Q ss_pred HHhc---CCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 220 AKRH---DMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 220 ak~l---g~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.... +++++++||++|.||+++|+.|.+.+
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 3322 56899999999999999999998655
No 144
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.65 E-value=7.7e-16 Score=166.80 Aligned_cols=139 Identities=17% Similarity=0.151 Sum_probs=95.8
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC----------CCCchhhhHHHHHHHHHHhcccceEEEEeccCc
Q psy17467 54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS----------CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSG 123 (730)
Q Consensus 54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt----------d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~d 123 (730)
..+.+++|||+|+++++++|..|+++++++|+|||++ +..+|+++..|++.+....
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-------------- 246 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-------------- 246 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG--------------
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc--------------
Confidence 5789999999999999999999999999999999998 7888888888888875432
Q ss_pred hhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhc--ccccccchhhhhhhcccCCcCCcccccc
Q psy17467 124 LKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVC--IPKLARNEACFYLASLEGHSNNIHCMAR 201 (730)
Q Consensus 124 l~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~--~p~~~~~~~~~~~~~~~~~~~~~~ivVg 201 (730)
..+++|++|+|||+|+.+.... ......| +|.....
T Consensus 247 ----------------~~~~~piiLvgNK~DL~~~k~~-----~v~l~~~~~fp~y~~~--------------------- 284 (354)
T 2xtz_A 247 ----------------CFEKTSFMLFLNKFDIFEKKVL-----DVPLNVCEWFRDYQPV--------------------- 284 (354)
T ss_dssp ----------------GGSSCEEEEEEECHHHHHHHTT-----TSCGGGSGGGTTCCCC---------------------
T ss_pred ----------------ccCCCeEEEEEECcchhhhhcc-----cccccccccccccccc---------------------
Confidence 1157899999999999643100 0000001 1211000
Q ss_pred ccccccCCCCChHHHHHHHHh----------------cCCeEEEEecCCCCChHHHHHHHHHHHHHHH
Q psy17467 202 NKIDREDREIPTEVGEDFAKR----------------HDMYYLETSAKASDNVEKLFMQIAAELMEKL 253 (730)
Q Consensus 202 NK~DL~~R~Vs~ee~~~lak~----------------lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~ 253 (730)
.....+.+++.+++.. ..+.+++|||++|.||+++|+++.+.+....
T Consensus 285 -----~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~ 347 (354)
T 2xtz_A 285 -----SSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRN 347 (354)
T ss_dssp -----SSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----cCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHH
Confidence 0001134666666432 2345799999999999999999999886543
No 145
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.65 E-value=9.8e-16 Score=165.20 Aligned_cols=145 Identities=17% Similarity=0.260 Sum_probs=103.4
Q ss_pred CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecC----------CCCchhhhHHHHHHHHH
Q psy17467 38 ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS----------CQPTFDCLTDWLREIEE 107 (730)
Q Consensus 38 pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvt----------d~eSfe~L~~wleeI~~ 107 (730)
+|+|. ....+.+++ +.+++|||+|+++++++|..|+++++++|+|||++ +..+|++...|+..+..
T Consensus 147 ~TiGi--~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 147 KTTGI--HEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp CCCSC--EEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred ceeee--EEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 44553 233444444 88999999999999999999999999999999999 67788888888887755
Q ss_pred HhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhh
Q psy17467 108 YASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187 (730)
Q Consensus 108 ~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~ 187 (730)
.. .-.++|++|+|||+|+.+..- .......++|...+
T Consensus 223 ~~------------------------------~~~~~piiLv~NK~DL~~eki-----~~~~l~~~fp~y~g-------- 259 (340)
T 4fid_A 223 NE------------------------------FLKGAVKLIFLNKMDLFEEKL-----TKVPLNTIFPEYTG-------- 259 (340)
T ss_dssp CG------------------------------GGTTSEEEEEEECHHHHHHHH-----HHSCGGGTCTTCCC--------
T ss_pred hh------------------------------ccCCCeEEEEEECchhhhhhc-----CcchHHHhhhhhcC--------
Confidence 32 115788999999999975321 11112333343311
Q ss_pred cccCCcCCccccccccccccCCCCChHHHHHHHHh---------------------------cCCeEEEEecCCCCChHH
Q psy17467 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR---------------------------HDMYYLETSAKASDNVEK 240 (730)
Q Consensus 188 ~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~---------------------------lg~~fvEtSAktG~GVee 240 (730)
. ...+++.+++.. .++.+++|||+++.||+.
T Consensus 260 ---------------------~-~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 260 ---------------------G-DNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp ---------------------T-TCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred ---------------------C-CCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 1 134555443322 246799999999999999
Q ss_pred HHHHHHHHHHH
Q psy17467 241 LFMQIAAELME 251 (730)
Q Consensus 241 LFe~Li~~l~e 251 (730)
+|..+.+.++.
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999976
No 146
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=172.94 Aligned_cols=162 Identities=20% Similarity=0.272 Sum_probs=96.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCC-CCCCC--------CCcceeeEEEEEEEeCCeEEEEEEEeCCCc-------hh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGV-FPPGQ--------GATIGVDFMIKTVEINNERIKLQIWDTAGQ-------ER 68 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~-f~~~~--------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~-------e~ 68 (730)
+..++|+|+|++|||||||++++++.. +...+ .++++.+.....+..++..+.+.+|||+|. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987643 33322 256665555555566777789999999998 66
Q ss_pred hhhhhH-------hhhccccEE-----------EEEeecCC-CCchhhhHH-HHHHHHHHhcccceEEEEeccCchhhHH
Q psy17467 69 FRSITQ-------SYYRSAHAL-----------ILVYDISC-QPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIVN 128 (730)
Q Consensus 69 ~~sl~~-------~~~r~ADaI-----------ILVyDvtd-~eSfe~L~~-wleeI~~~~~~~~piVLVg~k~dl~~~~ 128 (730)
+..++. .|++.++++ ++||++++ ..++..+.. |+..+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----------------------- 171 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----------------------- 171 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----------------------
Confidence 766766 777766654 48888876 667776652 33332
Q ss_pred HHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC
Q psy17467 129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED 208 (730)
Q Consensus 129 ~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~ 208 (730)
..+.|+++|+||+|+.+.....
T Consensus 172 ------------~~~~piIlV~NK~Dl~~~~ev~---------------------------------------------- 193 (361)
T 2qag_A 172 ------------HNKVNIVPVIAKADTLTLKERE---------------------------------------------- 193 (361)
T ss_dssp ------------CS-SCEEEEEECCSSSCHHHHH----------------------------------------------
T ss_pred ------------ccCCCEEEEEECCCCCCHHHHH----------------------------------------------
Confidence 1467889999999986432110
Q ss_pred CCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467 209 REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELM 250 (730)
Q Consensus 209 R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~ 250 (730)
...+++.+++..+++++++|||++|.| ++.|..+++.+.
T Consensus 194 --~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 194 --RLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp --HHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 012567778888899999999999999 899998888774
No 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.3e-16 Score=153.64 Aligned_cols=118 Identities=18% Similarity=0.341 Sum_probs=88.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhcc--
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP---GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRS-- 79 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~---~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~-- 79 (730)
...++|+|+|++|||||||+++|++..+.. .+.++.+.++ ..+.+.+|||||.+.+...+..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 456899999999999999999999987654 2333333221 33678999999999888888877776
Q ss_pred --ccEEEEEeecC-CCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 80 --AHALILVYDIS-CQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 80 --ADaIILVyDvt-d~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
+|++|+|||++ ++.+|+.+..|+..+..... ....++.|+++|+||+|+.
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE---------------------------SSCENGIDILIACNKSELF 169 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHH---------------------------HHSTTCCCEEEEEECTTST
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhh---------------------------hccccCCCEEEEEEchHhc
Confidence 89999999999 88999999999888765431 0022578999999999997
Q ss_pred hh
Q psy17467 157 ED 158 (730)
Q Consensus 157 ~~ 158 (730)
+.
T Consensus 170 ~~ 171 (193)
T 2ged_A 170 TA 171 (193)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.62 E-value=2e-15 Score=169.50 Aligned_cols=159 Identities=17% Similarity=0.210 Sum_probs=108.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGV-------FPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYR 78 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~-------f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r 78 (730)
..++|+++|..++|||||+++|++.. +.....+.++.+.....+.+++ ..+.+|||||+++|......++.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 46899999999999999999999876 2333333344444444556666 78999999999999888888999
Q ss_pred cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchh
Q psy17467 79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDED 158 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~ 158 (730)
.+|++|+|+|+++...-+. .+++..+.. .+.|+++|+||+|+.+.
T Consensus 96 ~aD~~ilVvda~~g~~~qt-~e~l~~~~~----------------------------------~~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQT-GEHMLILDH----------------------------------FNIPIIVVITKSDNAGT 140 (482)
T ss_dssp SCCEEEEEEETTTCSCHHH-HHHHHHHHH----------------------------------TTCCBCEEEECTTSSCH
T ss_pred hCCEEEEEEecCCCccHHH-HHHHHHHHH----------------------------------cCCCEEEEEECCCcccc
Confidence 9999999999998532222 122222211 24677888899998642
Q ss_pred hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc----CCeEEEEecCC
Q psy17467 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH----DMYYLETSAKA 234 (730)
Q Consensus 159 e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l----g~~fvEtSAkt 234 (730)
+.. ....++.++++... +++++++||++
T Consensus 141 ~~~------------------------------------------------~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 141 EEI------------------------------------------------KRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp HHH------------------------------------------------HHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred hhH------------------------------------------------HHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 210 01123455555544 57899999999
Q ss_pred CCChHHHHHHHHHHH
Q psy17467 235 SDNVEKLFMQIAAEL 249 (730)
Q Consensus 235 G~GVeeLFe~Li~~l 249 (730)
|.||+++++.|.+.+
T Consensus 173 g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 173 GFGVDELKNLIITTL 187 (482)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998876
No 149
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.62 E-value=3.8e-15 Score=161.78 Aligned_cols=160 Identities=21% Similarity=0.159 Sum_probs=106.0
Q ss_pred eE-EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch---------hhhhhhHhhh
Q psy17467 8 FK-VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE---------RFRSITQSYY 77 (730)
Q Consensus 8 iK-IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e---------~~~sl~~~~~ 77 (730)
++ |+++|.+|||||||+|++++..+.....+..+.++....+.+++ ..+.+|||+|.. .+.... ..+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence 44 99999999999999999999877555555566667778888888 568999999962 233332 357
Q ss_pred ccccEEEEEeecCCCC--chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCc
Q psy17467 78 RSAHALILVYDISCQP--TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDL 155 (730)
Q Consensus 78 r~ADaIILVyDvtd~e--Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL 155 (730)
..||++++|+|++++. +++.+..|.+.+.... . .+.|+++|+||+|+
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--------------------------~-----~~~p~ilV~NK~Dl 304 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIG--------------------------V-----SGKPILVTLNKIDK 304 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--------------------------C-----CSCCEEEEEECGGG
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--------------------------c-----CCCCEEEEEECCCC
Confidence 8999999999999886 5555555554443321 1 35678888888887
Q ss_pred chhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc---CCeEEEEec
Q psy17467 156 DEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH---DMYYLETSA 232 (730)
Q Consensus 156 ~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l---g~~fvEtSA 232 (730)
.+.... ...+.+..++..+ +..++++||
T Consensus 305 ~~~~~~-------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~~SA 335 (364)
T 2qtf_A 305 INGDLY-------------------------------------------------KKLDLVEKLSKELYSPIFDVIPISA 335 (364)
T ss_dssp CCSCHH-------------------------------------------------HHHHHHHHHHHHHCSCEEEEEECBT
T ss_pred CCchHH-------------------------------------------------HHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 531100 0012333344544 346899999
Q ss_pred CCCCChHHHHHHHHHHHH
Q psy17467 233 KASDNVEKLFMQIAAELM 250 (730)
Q Consensus 233 ktG~GVeeLFe~Li~~l~ 250 (730)
++|.|++++++.|.+.+.
T Consensus 336 ~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhc
Confidence 999999999999988763
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.62 E-value=2.9e-15 Score=172.41 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=108.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCC--CC-----CCCC------CcceeeEEEE--EEEe---CCeEEEEEEEeCCCch
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGV--FP-----PGQG------ATIGVDFMIK--TVEI---NNERIKLQIWDTAGQE 67 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~--f~-----~~~~------pTig~d~~~~--~i~v---dg~~v~LqLwDTpG~e 67 (730)
...+|+|+|..++|||||+++|+... .. .... .+.|.+.... .+.+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998621 11 0110 1223333322 2333 5567899999999999
Q ss_pred hhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceE
Q psy17467 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATA 147 (730)
Q Consensus 68 ~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVV 147 (730)
+|...+..+++.+|++|+|+|+++..+++....|...+. .+.|++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----------------------------------~~ipiI 127 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----------------------------------MDLEVV 127 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----------------------------------TTCEEE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----------------------------------CCCCEE
Confidence 999999999999999999999999999888877765542 356778
Q ss_pred EeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC--
Q psy17467 148 LASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-- 225 (730)
Q Consensus 148 LVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-- 225 (730)
+|+||+|+.... ..+..++++..+++
T Consensus 128 vViNKiDl~~a~----------------------------------------------------~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 128 PVLNKIDLPAAD----------------------------------------------------PERVAEEIEDIVGIDA 155 (599)
T ss_dssp EEEECTTSTTCC----------------------------------------------------HHHHHHHHHHHTCCCC
T ss_pred EeeeccCccccc----------------------------------------------------HHHHHHHHHHHhCCCc
Confidence 888888885310 12234455556665
Q ss_pred -eEEEEecCCCCChHHHHHHHHHHH
Q psy17467 226 -YYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 226 -~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.++++||++|.||+++|+.+++.+
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred ceEEEeecccCCCchhHHHHHhhcC
Confidence 389999999999999999998765
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.62 E-value=2.7e-15 Score=155.41 Aligned_cols=162 Identities=16% Similarity=0.198 Sum_probs=94.4
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-------CCcceeeEEEEEEEeCCeEEEEEEEeCCCch-------h
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQ-------GATIGVDFMIKTVEINNERIKLQIWDTAGQE-------R 68 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~-------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e-------~ 68 (730)
+...++|+|+|.+|||||||+|++++.... ..+ .+|++.+.....+..++..+.+.||||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 346799999999999999999998765543 333 5777777777777777777899999999972 2
Q ss_pred hhhhh-------Hhhhcc-------------ccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHH
Q psy17467 69 FRSIT-------QSYYRS-------------AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVN 128 (730)
Q Consensus 69 ~~sl~-------~~~~r~-------------ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~ 128 (730)
+..+. ..|+.. +|+++++++.+...-...-..++..+.
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~---------------------- 142 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---------------------- 142 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh----------------------
Confidence 33333 344443 789999998765322221122333331
Q ss_pred HHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC
Q psy17467 129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED 208 (730)
Q Consensus 129 ~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~ 208 (730)
.+.|+++|+||+|+.......
T Consensus 143 -------------~~~pvi~V~nK~D~~~~~e~~---------------------------------------------- 163 (274)
T 3t5d_A 143 -------------EKVNIIPLIAKADTLTPEECQ---------------------------------------------- 163 (274)
T ss_dssp -------------TTSCEEEEESSGGGSCHHHHH----------------------------------------------
T ss_pred -------------ccCCEEEEEeccCCCCHHHHH----------------------------------------------
Confidence 257888899999986432210
Q ss_pred CCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467 209 REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 209 R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
...+...+.....++.++++||++++|++++++.|.+.
T Consensus 164 --~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 164 --QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp --HHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred --HHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 01133455566778899999999999999999888654
No 152
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.61 E-value=6.3e-15 Score=161.49 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=101.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCC--cceeeEEEEEEEe-------------C--C----eEEEEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQG---VFPPGQGA--TIGVDFMIKTVEI-------------N--N----ERIKLQI 60 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~---~f~~~~~p--Tig~d~~~~~i~v-------------d--g----~~v~LqL 60 (730)
+..++|+++|..++|||||+++|++. .+.....+ |+...+....+.. + + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45699999999999999999999954 23333334 4443443333321 1 1 1378999
Q ss_pred EeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccC
Q psy17467 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTV 140 (730)
Q Consensus 61 wDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~ 140 (730)
|||||+++|.......+..+|++|+|+|+++........+++..+...
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-------------------------------- 133 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-------------------------------- 133 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--------------------------------
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--------------------------------
Confidence 999999998877777778889999999999764222222222222110
Q ss_pred CCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHH
Q psy17467 141 DPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFA 220 (730)
Q Consensus 141 ~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la 220 (730)
...|+++++||+|+.+... .....++.++++
T Consensus 134 -~~~~iivv~NK~Dl~~~~~------------------------------------------------~~~~~~~i~~~l 164 (408)
T 1s0u_A 134 -GIDKIIIVQNKIDLVDEKQ------------------------------------------------AEENYEQIKEFV 164 (408)
T ss_dssp -TCCCEEEEEECTTSSCTTT------------------------------------------------TTTHHHHHHHHH
T ss_pred -CCCeEEEEEEccCCCCHHH------------------------------------------------HHHHHHHHHHHH
Confidence 1236788889988853210 112235556666
Q ss_pred Hh---cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 221 KR---HDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 221 k~---lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
+. .+++++++||++|.||+++++.|.+.+
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 54 367899999999999999999988654
No 153
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.60 E-value=4.4e-15 Score=170.81 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=111.0
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcC--CCCC-----CCCC------cceeeEE--EEEEEe---CCeEEEEEEEeCCC
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQG--VFPP-----GQGA------TIGVDFM--IKTVEI---NNERIKLQIWDTAG 65 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~-----~~~p------Tig~d~~--~~~i~v---dg~~v~LqLwDTpG 65 (730)
.+...+|+|+|..++|||||+++|+.. .+.. ...+ +.|.+.. ...+.+ ++..+.++||||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 345689999999999999999999752 1110 0001 0111111 112223 45678999999999
Q ss_pred chhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc
Q psy17467 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA 145 (730)
Q Consensus 66 ~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P 145 (730)
+.+|......+++.+|++|+|+|+++..+++....|..... .+.|
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----------------------------------~~ip 127 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----------------------------------QDLV 127 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----------------------------------TTCE
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----------------------------------CCCC
Confidence 99999888899999999999999999998888877765432 3567
Q ss_pred eEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC
Q psy17467 146 TALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM 225 (730)
Q Consensus 146 VVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~ 225 (730)
+++|+||+|+.... ..+..++++..+++
T Consensus 128 iIvviNKiDl~~a~----------------------------------------------------~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 128 IIPVINKIDLPSAD----------------------------------------------------VDRVKKQIEEVLGL 155 (600)
T ss_dssp EEEEEECTTSTTCC----------------------------------------------------HHHHHHHHHHTSCC
T ss_pred EEEEEeccCccccC----------------------------------------------------HHHHHHHHHHhhCC
Confidence 78888888885310 11233455555565
Q ss_pred ---eEEEEecCCCCChHHHHHHHHHHH
Q psy17467 226 ---YYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 226 ---~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.++++||++|.||+++|+.+++.+
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhc
Confidence 389999999999999999998766
No 154
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=3e-15 Score=146.31 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=98.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----------hhhhhHhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----------FRSITQSY 76 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----------~~sl~~~~ 76 (730)
..+|+++|++|||||||++++++..+...+.|+.|.......+.+++ .+.+|||||... +......+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 47899999999999999999998775555556666555444555544 478999999732 23233334
Q ss_pred h---ccccEEEEEeecCCCCchhh--hHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEecc
Q psy17467 77 Y---RSAHALILVYDISCQPTFDC--LTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASD 151 (730)
Q Consensus 77 ~---r~ADaIILVyDvtd~eSfe~--L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGN 151 (730)
+ ..++++++|+|++++.++.. +..|+.. .+.|+++++|
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~v~n 145 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------------------------------------SNIAVLVLLT 145 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------------------------------------TTCCEEEEEE
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-------------------------------------cCCCeEEEEe
Confidence 4 57899999999998766542 2222211 3567788889
Q ss_pred CCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEE
Q psy17467 152 KTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLE 229 (730)
Q Consensus 152 K~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvE 229 (730)
|+|+....+. +...+.++.++...+ +.+++
T Consensus 146 K~D~~s~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T 1pui_A 146 KADKLASGAR------------------------------------------------KAQLNMVREAVLAFNGDVQVET 177 (210)
T ss_dssp CGGGSCHHHH------------------------------------------------HHHHHHHHHHHGGGCSCEEEEE
T ss_pred cccCCCchhH------------------------------------------------HHHHHHHHHHHHhcCCCCceEE
Confidence 9987643211 111244555555554 57899
Q ss_pred EecCCCCChHHHHHHHHHHH
Q psy17467 230 TSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 230 tSAktG~GVeeLFe~Li~~l 249 (730)
|||+++.|++++++.+.+.+
T Consensus 178 ~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EeecCCCCHHHHHHHHHHHH
Confidence 99999999999999988765
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.59 E-value=4.8e-16 Score=171.93 Aligned_cols=162 Identities=18% Similarity=0.209 Sum_probs=108.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcC--CCCCCC-----------------------------CCcceeeEEEEEEEeCCe
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQG--VFPPGQ-----------------------------GATIGVDFMIKTVEINNE 54 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~~-----------------------------~pTig~d~~~~~i~vdg~ 54 (730)
..+||+++|.+|+|||||+++|++. .+.... .+.++.+.....+..+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-- 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-- 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS--
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC--
Confidence 4699999999999999999999864 332110 1122222322333333
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhh
Q psy17467 55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAA 134 (730)
Q Consensus 55 ~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~ 134 (730)
.+.+.||||||+++|......+++.+|++|+|+|+++ .+|+.+..|..+...+.. ++...
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~-------------------~~~~~ 142 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHII-------------------LAKTM 142 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHH-------------------HHHHT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHH-------------------HHHHc
Confidence 4779999999999999888899999999999999999 788877766655544320 01111
Q ss_pred cccccCCCCCceEEeccCCCcchh---hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCC
Q psy17467 135 GLLCTVDPALATALASDKTDLDED---EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREI 211 (730)
Q Consensus 135 g~~~~~~~~~PVVLVGNK~DL~~~---e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~V 211 (730)
+ -.|+++++||+|+.+. +.. ...
T Consensus 143 ~-------~~~iivviNK~Dl~~~~~~~~~-----------------------------------------------~~~ 168 (435)
T 1jny_A 143 G-------LDQLIVAVNKMDLTEPPYDEKR-----------------------------------------------YKE 168 (435)
T ss_dssp T-------CTTCEEEEECGGGSSSTTCHHH-----------------------------------------------HHH
T ss_pred C-------CCeEEEEEEcccCCCccccHHH-----------------------------------------------HHH
Confidence 1 1357788888888641 000 011
Q ss_pred ChHHHHHHHHhcC-----CeEEEEecCCCCChHHHHH
Q psy17467 212 PTEVGEDFAKRHD-----MYYLETSAKASDNVEKLFM 243 (730)
Q Consensus 212 s~ee~~~lak~lg-----~~fvEtSAktG~GVeeLFe 243 (730)
..++.+++++.++ ++++++||++|.||.++++
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 169 IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 2355677777766 6899999999999987654
No 156
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.59 E-value=6.7e-16 Score=171.57 Aligned_cols=114 Identities=19% Similarity=0.143 Sum_probs=77.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCC--------chhhhhhhHhhhc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG--------QERFRSITQSYYR 78 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG--------~e~~~sl~~~~~r 78 (730)
..+|+|+|++|||||||+|+|++..+... .++.|.+.......+......+.+||||| ++.+......+++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 46899999999999999999998766422 23444445444455544446899999999 7777788889999
Q ss_pred cccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 79 SAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 79 ~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
.||++|+|+|.++..+ ....|+.++.+ ..+.|+++|+||+|+.
T Consensus 102 ~ad~il~VvD~~~~~~--~~d~~l~~~l~---------------------------------~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 102 EADVIIFMVNGREGVT--AADEEVAKILY---------------------------------RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HCSEEEEEEESSSCSC--HHHHHHHHHHT---------------------------------TCCSCEEEEEECC---
T ss_pred hCCEEEEEEeCCCCCC--hHHHHHHHHHH---------------------------------HcCCCEEEEEECccch
Confidence 9999999999876433 33344444322 1467888889999985
No 157
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.59 E-value=1.2e-14 Score=161.26 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=67.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCcceeeEEEEEEEeC
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVF-------------------------------PPGQGATIGVDFMIKTVEIN 52 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~f-------------------------------~~~~~pTig~d~~~~~i~vd 52 (730)
.+..++|+++|.+|+|||||+++|+...- .....+.++.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45669999999999999999999964311 11112344555555555555
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 53 NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 53 g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
+ ..+.||||||+++|......+++.||++|||+|+++..
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~ 132 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE 132 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc
Confidence 5 68999999999999988888999999999999999864
No 158
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.59 E-value=5.6e-15 Score=155.89 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=106.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch-h--------hhhhhHhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQE-R--------FRSITQSY 76 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e-~--------~~sl~~~~ 76 (730)
..+|+|+|++|||||||+|++++..+.. ...+..+.......+..++ ..+.+|||||.. . +......+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3579999999999999999999887632 2333333333334445555 679999999986 2 22333566
Q ss_pred hccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcc
Q psy17467 77 YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
++.+|++++|+|+++ +.....|+-+... ..+.|+++++||+|+.
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---------------------------------~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLR---------------------------------EGKAPVILAVNKVDNV 129 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHH---------------------------------SSSSCEEEEEESTTTC
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHH---------------------------------hcCCCEEEEEECcccC
Confidence 889999999999976 4433334332211 1467888888988886
Q ss_pred hhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCC-eEEEEecCCC
Q psy17467 157 EDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDM-YYLETSAKAS 235 (730)
Q Consensus 157 ~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~-~fvEtSAktG 235 (730)
... ....+...++++.+++ .++++||++|
T Consensus 130 ~~~--------------------------------------------------~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 130 QEK--------------------------------------------------ADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCH--------------------------------------------------HHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred ccH--------------------------------------------------HHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 311 0112345556666776 7999999999
Q ss_pred CChHHHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAAEL 249 (730)
Q Consensus 236 ~GVeeLFe~Li~~l 249 (730)
.|++++++.+.+.+
T Consensus 160 ~~v~~l~~~i~~~l 173 (301)
T 1ega_A 160 LNVDTIAAIVRKHL 173 (301)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999987654
No 159
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.59 E-value=9.2e-16 Score=158.71 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=77.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCC------CCCCcce--------------------eeEE-------------
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPP------GQGATIG--------------------VDFM------------- 45 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~------~~~pTig--------------------~d~~------------- 45 (730)
....+|+|+|++|||||||+|+|++..+.+ +..|+.. .++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 356799999999999999999999988742 2223310 0000
Q ss_pred ----------EEEEEeC-CeEEEEEEEeCCCch-------------hhhhhhHhhhccccEEE-EEeecCCCCchhhhHH
Q psy17467 46 ----------IKTVEIN-NERIKLQIWDTAGQE-------------RFRSITQSYYRSAHALI-LVYDISCQPTFDCLTD 100 (730)
Q Consensus 46 ----------~~~i~vd-g~~v~LqLwDTpG~e-------------~~~sl~~~~~r~ADaII-LVyDvtd~eSfe~L~~ 100 (730)
...+.+. .....+.||||||.. .+..+...|++.++++| +|+|+++..+.++...
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0000000 012579999999963 34556678888888777 6999988655554434
Q ss_pred HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 101 WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 101 wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
|+..+. ..+.|+++|+||+|+.+
T Consensus 184 ~~~~~~----------------------------------~~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 184 IAKEVD----------------------------------PQGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHC----------------------------------TTCSSEEEEEECGGGSC
T ss_pred HHHHhC----------------------------------CCCCeEEEEEEccccCC
Confidence 444431 13578888999999863
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.59 E-value=2.1e-14 Score=157.37 Aligned_cols=165 Identities=17% Similarity=0.140 Sum_probs=108.6
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCC--cceeeEEEEEEEe-------------C--C----eEEEEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGV---FPPGQGA--TIGVDFMIKTVEI-------------N--N----ERIKLQ 59 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~---f~~~~~p--Tig~d~~~~~i~v-------------d--g----~~v~Lq 59 (730)
.+..++|+++|..++|||||+++|++.. +.....+ |+...+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999999542 2333334 4433343333321 1 1 137899
Q ss_pred EEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhccccc
Q psy17467 60 IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCT 139 (730)
Q Consensus 60 LwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~ 139 (730)
||||||+++|.......+..+|++|+|+|+++........+.+..+...
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~------------------------------- 135 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII------------------------------- 135 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-------------------------------
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-------------------------------
Confidence 9999999998877777788899999999999764222222222222111
Q ss_pred CCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH
Q psy17467 140 VDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF 219 (730)
Q Consensus 140 ~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l 219 (730)
...|+++|+||+|+.+..... ...++.+++
T Consensus 136 --~~~~iivviNK~Dl~~~~~~~------------------------------------------------~~~~~i~~~ 165 (410)
T 1kk1_A 136 --GQKNIIIAQNKIELVDKEKAL------------------------------------------------ENYRQIKEF 165 (410)
T ss_dssp --TCCCEEEEEECGGGSCHHHHH------------------------------------------------HHHHHHHHH
T ss_pred --CCCcEEEEEECccCCCHHHHH------------------------------------------------HHHHHHHHH
Confidence 124678889999986532110 012334444
Q ss_pred HHh---cCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 220 AKR---HDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 220 ak~---lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
++. .+++++++||++|.||+++++.|.+.+
T Consensus 166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 443 357899999999999999999987654
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.58 E-value=4.3e-15 Score=166.40 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=63.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCC--C-----------------------------CCCCCcceeeEEEEEEEeCC
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVF--P-----------------------------PGQGATIGVDFMIKTVEINN 53 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f--~-----------------------------~~~~pTig~d~~~~~i~vdg 53 (730)
+..+||+++|.+|+|||||+++|++... . ....+.++.+..... ++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH--FST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE--EEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE--Eec
Confidence 4569999999999999999999975411 0 011112222222233 333
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467 54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDC 97 (730)
Q Consensus 54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~ 97 (730)
..+.+.||||||+++|......+++.+|++|+|+|+++..++..
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~ 152 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccc
Confidence 44789999999999999999999999999999999999766544
No 162
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.58 E-value=1.4e-16 Score=181.18 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=112.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEE
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILV 86 (730)
..+|+++|.+|||||||+++|++..+...+.++++.++....+.+++ ...+.||||||++.|..++..+++.+|++|||
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 46899999999999999999998776655666666555444444422 23689999999999999999999999999999
Q ss_pred eecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 87 YDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 87 yDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
+|+++....+....| ..+ . ..+.|+++|+||+|+.+...
T Consensus 83 VDa~dg~~~qt~e~l-~~~---~-------------------------------~~~vPiIVViNKiDl~~~~~------ 121 (537)
T 3izy_P 83 VAADDGVMKQTVESI-QHA---K-------------------------------DAHVPIVLAINKCDKAEADP------ 121 (537)
T ss_dssp CBSSSCCCHHHHHHH-HHH---H-------------------------------TTTCCEEECCBSGGGTTTSC------
T ss_pred EECCCCccHHHHHHH-HHH---H-------------------------------HcCCcEEEEEecccccccch------
Confidence 999997665544322 111 1 14568899999999853110
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHH---HHhc--CCeEEEEecCCCCChHHH
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF---AKRH--DMYYLETSAKASDNVEKL 241 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~l---ak~l--g~~fvEtSAktG~GVeeL 241 (730)
..+. ++...+ +..+ .+++++|||++|.||+++
T Consensus 122 ------------------------------------------~~v~-~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 122 ------------------------------------------EKVK-KELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp ------------------------------------------CSSS-SHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred ------------------------------------------HHHH-HHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 0000 111111 1122 357999999999999999
Q ss_pred HHHHHHHH
Q psy17467 242 FMQIAAEL 249 (730)
Q Consensus 242 Fe~Li~~l 249 (730)
|+.+...+
T Consensus 159 le~I~~l~ 166 (537)
T 3izy_P 159 AEATIALA 166 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998765
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.58 E-value=9.4e-15 Score=149.59 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=105.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc--ceeeEEEEEEEeCCeEEEEEEEeCCCc--------hhhhhhhH
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGAT--IGVDFMIKTVEINNERIKLQIWDTAGQ--------ERFRSITQ 74 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pT--ig~d~~~~~i~vdg~~v~LqLwDTpG~--------e~~~sl~~ 74 (730)
...+||+++|.+|||||||+|++++..+.....++ ++.......+.+++ ..+.||||||. +++.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 35699999999999999999999998765544333 22234445556666 67899999996 22222222
Q ss_pred hh----hccccEEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEe
Q psy17467 75 SY----YRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALA 149 (730)
Q Consensus 75 ~~----~r~ADaIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLV 149 (730)
.+ .+.+|++|+|+|+++ +... ..+++.+...... ...+.|++|+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~----------------------------~~~~~~iilv 145 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGR---FTAQDQQAVRQVRDMFGE----------------------------DVLKWMVIVF 145 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTB---CCHHHHHHHHHHHHHHCG----------------------------GGGGGEEEEE
T ss_pred HHHHhcCCCCCEEEEEEeCCC---CCHHHHHHHHHHHHHhCh----------------------------hhhccEEEEE
Confidence 23 389999999999985 3222 2233343332110 0135678888
Q ss_pred ccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEE
Q psy17467 150 SDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLE 229 (730)
Q Consensus 150 GNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvE 229 (730)
+||.|+.+..-. |.- +....+..+.+.+..|..++.
T Consensus 146 ~nK~Dl~~~~~~-------------------------------------------~~l-~~~~~~~l~~l~~~~g~~~~~ 181 (247)
T 3lxw_A 146 TRKEDLAGGSLH-------------------------------------------DYV-SNTENRALRELVAECGGRVCA 181 (247)
T ss_dssp ECGGGGTTCCHH-------------------------------------------HHH-HHCCCHHHHHHHHHTTTCEEE
T ss_pred EchHhcCCCCHH-------------------------------------------HHH-hhcccHHHHHHHHHcCCeEEE
Confidence 899988532100 000 011124567788888888877
Q ss_pred EecCC-----CCChHHHHHHHHHHHH
Q psy17467 230 TSAKA-----SDNVEKLFMQIAAELM 250 (730)
Q Consensus 230 tSAkt-----G~GVeeLFe~Li~~l~ 250 (730)
+++.. +.||++|++.|.+.+.
T Consensus 182 ~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 182 FDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCccccHHHHHHHHHHHHHHHH
Confidence 77654 5799999998887763
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.57 E-value=3.7e-15 Score=163.01 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=70.8
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcC--------CCCCC---C----CCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQG--------VFPPG---Q----GATIGVDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~--------~f~~~---~----~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
.+..++|+++|.+|+|||||+++|++. .+... . ..+.|.+.....+.++.....+.||||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 345699999999999999999999873 22110 0 00222222233344444447789999999999
Q ss_pred hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHH
Q psy17467 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105 (730)
Q Consensus 69 ~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI 105 (730)
|......+++.+|++|+|+|+++....+ ..+|+..+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~ 123 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLA 123 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHH
Confidence 9888888999999999999999876443 34555444
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.55 E-value=6.3e-15 Score=161.06 Aligned_cols=93 Identities=18% Similarity=0.124 Sum_probs=66.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcC-------CCCCC-------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQG-------VFPPG-------QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRS 71 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~-------~f~~~-------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s 71 (730)
..+||+++|.+++|||||+++|++. .+... .....|.+.....+.++.....+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 3589999999999999999999863 11110 000122223233334444447799999999999988
Q ss_pred hhHhhhccccEEEEEeecCCCCchhhh
Q psy17467 72 ITQSYYRSAHALILVYDISCQPTFDCL 98 (730)
Q Consensus 72 l~~~~~r~ADaIILVyDvtd~eSfe~L 98 (730)
....+++.+|++|+|+|+++....+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~ 108 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR 108 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH
Confidence 888889999999999999987654443
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.55 E-value=1.1e-14 Score=160.93 Aligned_cols=157 Identities=21% Similarity=0.194 Sum_probs=104.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCC--CC----------CCCc---------------------ceeeEEEEEEEe
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFP--PG----------QGAT---------------------IGVDFMIKTVEI 51 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~--~~----------~~pT---------------------ig~d~~~~~i~v 51 (730)
+..+||+++|.+++|||||+++|++.... .. ..++ ++.+.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45689999999999999999999865311 00 0011 111111222333
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHH
Q psy17467 52 NNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMA 131 (730)
Q Consensus 52 dg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~ 131 (730)
+ ...+.||||||+++|......++..+|++|+|+|+++....+ ..+|+..+...
T Consensus 102 ~--~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~----------------------- 155 (434)
T 1zun_B 102 A--KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL----------------------- 155 (434)
T ss_dssp S--SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-----------------------
T ss_pred C--CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-----------------------
Confidence 3 367999999999999888888899999999999999875433 33444333211
Q ss_pred hhhcccccCCCCCceEEeccCCCcchh-hHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCC
Q psy17467 132 SAAGLLCTVDPALATALASDKTDLDED-EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDRE 210 (730)
Q Consensus 132 ~~~g~~~~~~~~~PVVLVGNK~DL~~~-e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~ 210 (730)
...|+++|+||+|+.+. +... .
T Consensus 156 ----------~~~~iIvviNK~Dl~~~~~~~~-----------------------------------------------~ 178 (434)
T 1zun_B 156 ----------GIKHIVVAINKMDLNGFDERVF-----------------------------------------------E 178 (434)
T ss_dssp ----------TCCEEEEEEECTTTTTSCHHHH-----------------------------------------------H
T ss_pred ----------CCCeEEEEEEcCcCCcccHHHH-----------------------------------------------H
Confidence 11257888899998641 1100 0
Q ss_pred CChHHHHHHHHhcC-----CeEEEEecCCCCChHHHHHH
Q psy17467 211 IPTEVGEDFAKRHD-----MYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 211 Vs~ee~~~lak~lg-----~~fvEtSAktG~GVeeLFe~ 244 (730)
...++..++++.++ ++++++||++|.||+++|+.
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 01245667777777 68999999999999987653
No 167
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.54 E-value=2.3e-14 Score=155.80 Aligned_cols=253 Identities=13% Similarity=0.035 Sum_probs=149.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh--
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFR-- 70 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~-- 70 (730)
++|+++|.||||||||+|++++..+.....|..+.+.....+.+++. ...+++|||||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 78999999999999999999998765444454333343345555542 2579999999987653
Q ss_pred --hhh---HhhhccccEEEEEeecCCC----------CchhhhHHHHHHHHHHhcc--cceEEEEe--cc-Cch--hhHH
Q psy17467 71 --SIT---QSYYRSAHALILVYDISCQ----------PTFDCLTDWLREIEEYASF--KVLRVLVG--GT-SGL--KIVN 128 (730)
Q Consensus 71 --sl~---~~~~r~ADaIILVyDvtd~----------eSfe~L~~wleeI~~~~~~--~~piVLVg--~k-~dl--~~~~ 128 (730)
.+. ..+++.+|++++|+|+++. ..++++..+..++.-.... ..+..-+. .+ ++. ....
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 232 2357899999999999873 4556665555554211000 00000000 00 000 0000
Q ss_pred HHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccC
Q psy17467 129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED 208 (730)
Q Consensus 129 ~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~ 208 (730)
+.+....- ....+.|+- ..++. ..+ ......+.-....|.++|+|++|..-
T Consensus 163 ~~l~~~~~--~L~~~~~~~----~~~~~----------------------~~e-~~~l~~~~llt~KPvi~v~N~~e~~~ 213 (363)
T 1jal_A 163 SVMEKILP--VLENAGMIR----SVGLD----------------------KEE-LQAIKSYNFLTLKPTMYIANVNEDGF 213 (363)
T ss_dssp HHHHHHHH--HHHTTCCGG----GSCCC----------------------HHH-HHHHGGGCCSTTSCEEEEEECCTTCS
T ss_pred HHHHHHHH--HHhcCCCcc----ccCCC----------------------HHH-HHHHHHhhcccCCcEEEEEecccccc
Confidence 00000000 000011110 00111 111 12223344456789999999998642
Q ss_pred -CCCChHHHHHHHHhcCCeEEEEecCC----------------------CCChHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy17467 209 -REIPTEVGEDFAKRHDMYYLETSAKA----------------------SDNVEKLFMQIAAELMEKLAEKLTIMHDRGV 265 (730)
Q Consensus 209 -R~Vs~ee~~~lak~lg~~fvEtSAkt----------------------G~GVeeLFe~Li~~l~e~~~~~~~~~~~~~~ 265 (730)
...-.+..++++...++.++++||+. +.|++.+.+.+++.+
T Consensus 214 ~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L---------------- 277 (363)
T 1jal_A 214 ENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL---------------- 277 (363)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT----------------
T ss_pred cccHHHHHHHHHHHHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh----------------
Confidence 22334667778888899999999764 367788887777777
Q ss_pred ccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhcCCCCcee
Q psy17467 266 GMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKKFPNIDIK 310 (730)
Q Consensus 266 ~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~~p~~~~~ 310 (730)
.+++.|+.. ..-.+|-++++|.+..+.|-. |.++...|+.
T Consensus 278 -~li~~ft~g----~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~ 318 (363)
T 1jal_A 278 -NLQTYFTAG----VKEVRAWTVSVGATAPKAAAVIHTDFEKGFIR 318 (363)
T ss_dssp -TEEEEEEEC----SSEEEEEEEETTCBHHHHHHTTCTTHHHHCCE
T ss_pred -CCEEEECCC----CCCcceeEecCCCcHHHHHHhhHHHHHhccEE
Confidence 788888844 334578889999999999887 9999988874
No 168
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.53 E-value=1.2e-14 Score=165.16 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=83.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC-----------------CCCC-----CCcceeeEEEEEEEeCCeEEEEEEEeC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-----------------PPGQ-----GATIGVDFMIKTVEINNERIKLQIWDT 63 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-----------------~~~~-----~pTig~d~~~~~i~vdg~~v~LqLwDT 63 (730)
...+|+|+|.+|||||||+++|+.... ...+ .+.++.......+.+++ +.+.||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 457999999999999999999962100 0000 01112222233455555 78999999
Q ss_pred CCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCC
Q psy17467 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPA 143 (730)
Q Consensus 64 pG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~ 143 (730)
||+.+|......+++.+|++|+|+|+++..+.+...-|. .+. ..+
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~----------------------------------~~~ 134 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR----------------------------------LRH 134 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH----------------------------------TTT
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH----------------------------------HcC
Confidence 999999999999999999999999999988887765453 221 135
Q ss_pred CceEEeccCCCcch
Q psy17467 144 LATALASDKTDLDE 157 (730)
Q Consensus 144 ~PVVLVGNK~DL~~ 157 (730)
.|+++|+||+|+..
T Consensus 135 iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 135 TPIMTFINKMDRDT 148 (528)
T ss_dssp CCEEEEEECTTSCC
T ss_pred CCEEEEEeCCCCcc
Confidence 78888999999863
No 169
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.52 E-value=8.5e-15 Score=154.75 Aligned_cols=162 Identities=19% Similarity=0.258 Sum_probs=84.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcC-CCCCCC--------CCcceeeEEEEEEEeCCeEEEEEEEeCCCc-------hh
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQG-VFPPGQ--------GATIGVDFMIKTVEINNERIKLQIWDTAGQ-------ER 68 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~-~f~~~~--------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~-------e~ 68 (730)
+..++|+|+|++|||||||++++.+. .++..+ .++.+.......++.++....+.+|||+|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 444332 122222222222333455678999999998 44
Q ss_pred hhhhhH-------hhhccccE-----------EEEEeecCC-CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHH
Q psy17467 69 FRSITQ-------SYYRSAHA-----------LILVYDISC-QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNE 129 (730)
Q Consensus 69 ~~sl~~-------~~~r~ADa-----------IILVyDvtd-~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~ 129 (730)
+..+.. .+++.+++ .+++|+.+. ..+++.+.. +.+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~--~~l~~l--------------------- 152 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV--AFMKAI--------------------- 152 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH--HHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH--HHHHHH---------------------
Confidence 444444 44443322 224444432 234655431 222211
Q ss_pred HHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCC
Q psy17467 130 MASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDR 209 (730)
Q Consensus 130 i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R 209 (730)
..+.++++|+||.|+.+..+ .
T Consensus 153 -----------~~~~~iilV~~K~Dl~~~~e------------------------------------------------~ 173 (301)
T 2qnr_A 153 -----------HNKVNIVPVIAKADTLTLKE------------------------------------------------R 173 (301)
T ss_dssp -----------TTTSCEEEEECCGGGSCHHH------------------------------------------------H
T ss_pred -----------HhcCCEEEEEEeCCCCCHHH------------------------------------------------H
Confidence 13457788888888864221 0
Q ss_pred CCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 210 EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 210 ~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.+..++++++++.+++.|+++||++| |++++|..+.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 12346788899999999999999999 9999999998877
No 170
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.52 E-value=5.4e-15 Score=156.01 Aligned_cols=133 Identities=18% Similarity=0.172 Sum_probs=106.5
Q ss_pred HHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC-chhhhH
Q psy17467 22 CLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP-TFDCLT 99 (730)
Q Consensus 22 SLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e-Sfe~L~ 99 (730)
+|+.+|+.+.|. ..+.||+| +.....+..++ .+++||+ ++++..+++.+++++|++|+|||++++. +|+.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT-CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCc-cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 788999999998 88899999 44444433333 6899999 8899999999999999999999999997 788889
Q ss_pred HHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhccccccc
Q psy17467 100 DWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLAR 179 (730)
Q Consensus 100 ~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~ 179 (730)
.|+..+.. .+.|++||+||+||.+..
T Consensus 106 ~~l~~~~~----------------------------------~~~piilv~NK~DL~~~~-------------------- 131 (301)
T 1u0l_A 106 KFLVLAEK----------------------------------NELETVMVINKMDLYDED-------------------- 131 (301)
T ss_dssp HHHHHHHH----------------------------------TTCEEEEEECCGGGCCHH--------------------
T ss_pred HHHHHHHH----------------------------------CCCCEEEEEeHHHcCCch--------------------
Confidence 99987643 356778888888885321
Q ss_pred chhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC--CeEEEEecCCCCChHHHHHHHH
Q psy17467 180 NEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD--MYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg--~~fvEtSAktG~GVeeLFe~Li 246 (730)
.+ ++++++++.++ +.|++|||++|.||+++|..+.
T Consensus 132 ------------------------------~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 132 ------------------------------DL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp ------------------------------HH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred ------------------------------hH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 11 34566676666 8999999999999999998764
No 171
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.51 E-value=6.8e-14 Score=152.16 Aligned_cols=149 Identities=11% Similarity=0.065 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEee
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyD 88 (730)
+|+++|.+++|||||+++|+ . ..++.+.....+..++ ..+.||||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~--~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------K--KGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------E--EEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------h--CCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 1 1222223333344444 569999999999998777778899999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCce-EEecc-CCCcchhhHHHHHHH
Q psy17467 89 ISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALAT-ALASD-KTDLDEDEHVLACLL 166 (730)
Q Consensus 89 vtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PV-VLVGN-K~DL~~~e~~~~~l~ 166 (730)
+ ...+....+|+..+.. .+.|. +++.| |+|+ +.+...
T Consensus 93 -~-~g~~~qt~e~~~~~~~----------------------------------~~i~~~ivvvNNK~Dl-~~~~~~---- 131 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDL----------------------------------LGFKHGIIALTRSDST-HMHAID---- 131 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHH----------------------------------TTCCEEEEEECCGGGS-CHHHHH----
T ss_pred -C-CCCcHHHHHHHHHHHH----------------------------------cCCCeEEEEEEeccCC-CHHHHH----
Confidence 4 4445555666555432 13344 66667 8888 322100
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhc---CCeEEE--EecCC---CCCh
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH---DMYYLE--TSAKA---SDNV 238 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~l---g~~fvE--tSAkt---G~GV 238 (730)
...++.+++++.. .+++++ +||++ |.||
T Consensus 132 --------------------------------------------~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 132 --------------------------------------------ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp --------------------------------------------HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred --------------------------------------------HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 0013444555444 368999 99999 9999
Q ss_pred HHHHHHHHHHHHHH
Q psy17467 239 EKLFMQIAAELMEK 252 (730)
Q Consensus 239 eeLFe~Li~~l~e~ 252 (730)
+++++.|.+.+...
T Consensus 168 ~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 168 DELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc
Confidence 99999999887544
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.51 E-value=6e-15 Score=164.49 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=65.7
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHcC--CCCCC-----------------------C------CCcceeeEEEEEE
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQG--VFPPG-----------------------Q------GATIGVDFMIKTV 49 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~~-----------------------~------~pTig~d~~~~~i 49 (730)
|...+..++|+++|.+|+|||||+++|++. .+... . ...++.+.....+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 565567799999999999999999999863 22110 0 0112222222333
Q ss_pred EeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467 50 EINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 50 ~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~ 92 (730)
..++ ..+.||||||+++|......++..+|++|+|+|+++.
T Consensus 81 ~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 81 ETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp ECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred ecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 3344 7899999999999998888899999999999999875
No 173
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.51 E-value=9e-15 Score=160.58 Aligned_cols=264 Identities=18% Similarity=0.100 Sum_probs=134.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEE---------------------eCC-eEEEEEEEeCCC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVE---------------------INN-ERIKLQIWDTAG 65 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~---------------------vdg-~~v~LqLwDTpG 65 (730)
+||+|+|.||||||||+|++++........|..+.+.....+. +++ ..+.++||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998874444444333333222211 233 257899999999
Q ss_pred chhh----hhhhH---hhhccccEEEEEeecCCC-----------CchhhhHHHHHHHHHHh----cccceE--------
Q psy17467 66 QERF----RSITQ---SYYRSAHALILVYDISCQ-----------PTFDCLTDWLREIEEYA----SFKVLR-------- 115 (730)
Q Consensus 66 ~e~~----~sl~~---~~~r~ADaIILVyDvtd~-----------eSfe~L~~wleeI~~~~----~~~~pi-------- 115 (730)
..+. ..+.. .+++++|++++|+|+++. ..++++..|..++.... ....+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~ 160 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ 160 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSS
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 8542 22333 347899999999999886 55666655555543220 000000
Q ss_pred ----------EEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhh
Q psy17467 116 ----------VLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFY 185 (730)
Q Consensus 116 ----------VLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~ 185 (730)
.+-|-..+.+.+.+++..++.... . ..++-.+. ..+.
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~---------~-~~~~~~e~-~~l~---------------------- 207 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPED---------P-TKWSQDDL-LAFA---------------------- 207 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSC---------G-GGCCHHHH-HHHH----------------------
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCc---------c-ccCCHHHH-HHHH----------------------
Confidence 000001234455666666665321 0 11221110 0000
Q ss_pred hhcccCCcCCccccccccccccCCCCChHHHHHHHHh---cCCeEEEEecCCCCChHHHHH-HH------------HHHH
Q psy17467 186 LASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR---HDMYYLETSAKASDNVEKLFM-QI------------AAEL 249 (730)
Q Consensus 186 ~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~---lg~~fvEtSAktG~GVeeLFe-~L------------i~~l 249 (730)
........|.++|+||+|+. ..+...++.+. .++.++.+||+.+.|+.++++ .+ ...+
T Consensus 208 --~~~~~~~kP~i~v~NK~D~~----~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l 281 (397)
T 1wxq_A 208 --SEIRRVNKPMVIAANKADAA----SDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDM 281 (397)
T ss_dssp --HHHHHHHSCEEEEEECGGGS----CHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------
T ss_pred --HhhhccCCCEEEEEeCcccc----chHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccC
Confidence 00011236888889999875 22333444333 378899999999999987644 00 0000
Q ss_pred H-------HHHHHHhh-hccc---------c--ccccchhhhccc-------ccCCCCCCCCCccccchhhHHHHHH-hh
Q psy17467 250 M-------EKLAEKLT-IMHD---------R--GVGMLTRIYNIK-------KACGDAKSKPSFLSDKSLESCIKQI-VK 302 (730)
Q Consensus 250 ~-------e~~~~~~~-~~~~---------~--~~~~l~riy~~~-------~~~~~~~s~P~~l~~~~~~~~~~~~-~k 302 (730)
- +..++.-. .... . ..-.++++|+.. |.++ ...++-.++++++..++|.. |.
T Consensus 282 ~~~~~~~~e~ire~~l~~~g~~g~~~~i~~~~~~~L~li~vft~~~~~~~~~~~g~-~~~~~~~l~~G~t~~d~a~~iH~ 360 (397)
T 1wxq_A 282 SEKQKRALMVIKEKVLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGN-VLPHVFLMKKGSTPRDLAFKVHT 360 (397)
T ss_dssp ------CTTHHHHHHTSSSSSCSHHHHHHHHHHTTSCEEEEEEESCC-----CCSC-SSCCCEEEETTCCHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhCCeEEEeecccccccCCcCc-ccceeEEeCCCCCHHHHHHHHhH
Confidence 0 00010000 0000 0 122455567632 2221 23368889999999999887 99
Q ss_pred cCCCCceee
Q psy17467 303 KFPNIDIKS 311 (730)
Q Consensus 303 ~~p~~~~~~ 311 (730)
++...|+.-
T Consensus 361 d~~~~f~~a 369 (397)
T 1wxq_A 361 DLGKGFLYA 369 (397)
T ss_dssp HHHHTEEEE
T ss_pred HHHhhhhhh
Confidence 999998865
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.51 E-value=1.5e-15 Score=171.39 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=66.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIIL 85 (730)
+..+|+++|.+++|||||+++|.+..+.....++++.+.....+.+++ ..+.||||||++.|...+...+..+|++||
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 346899999999999999999997655444333333333233344455 468999999999999998889999999999
Q ss_pred EeecCCCCc
Q psy17467 86 VYDISCQPT 94 (730)
Q Consensus 86 VyDvtd~eS 94 (730)
|+|+++...
T Consensus 81 VVda~~g~~ 89 (501)
T 1zo1_I 81 VVAADDGVM 89 (501)
T ss_dssp EEETTTBSC
T ss_pred EeecccCcc
Confidence 999988543
No 175
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.50 E-value=1.8e-14 Score=160.98 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=58.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHc--CCCCC------------------------CC-----CCcceeeEEEEEEEeCC
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQ--GVFPP------------------------GQ-----GATIGVDFMIKTVEINN 53 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~--~~f~~------------------------~~-----~pTig~d~~~~~i~vdg 53 (730)
+..++|+++|..++|||||+++|+. +.+.. .. ...++.+.....+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999974 22210 00 01112222223344454
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC---CchhhhHHHHHHH
Q psy17467 54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ---PTFDCLTDWLREI 105 (730)
Q Consensus 54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~---eSfe~L~~wleeI 105 (730)
..+.||||||+++|......++..+|++|||+|+++. .||+...+|.+.+
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l 173 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA 173 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH
Confidence 6799999999999988888889999999999999986 5676555555544
No 176
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.50 E-value=5.8e-14 Score=152.52 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=107.0
Q ss_pred HHHHHcCCCCCC-------CCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC-----
Q psy17467 24 VRRFTQGVFPPG-------QGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC----- 91 (730)
Q Consensus 24 LnrLl~~~f~~~-------~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd----- 91 (730)
+.|+....+.++ ..+|+|... ..+.+++ +.+++|||+|++.++..|..++++++++|+|||+++
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l 241 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEE
T ss_pred HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccc
Confidence 444544555443 346677543 4556665 889999999999999999999999999999999999
Q ss_pred -----CCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHH
Q psy17467 92 -----QPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLL 166 (730)
Q Consensus 92 -----~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~ 166 (730)
..+|+++..|++.+.... .-.++|++|++||.|+.+..- .
T Consensus 242 ~ed~~~n~~~es~~~~~~i~~~~------------------------------~~~~~piILv~NK~DL~~~ki-----~ 286 (362)
T 1zcb_A 242 MEDRQTNRLTESLNIFETIVNNR------------------------------VFSNVSIILFLNKTDLLEEKV-----Q 286 (362)
T ss_dssp TTEEEEEHHHHHHHHHHHHHTCG------------------------------GGTTSEEEEEEECHHHHHHHT-----T
T ss_pred cccccccHHHHHHHHHHHHhcch------------------------------hhCCCCEEEEEEChhhhhhhc-----c
Confidence 678888888888875432 115689999999999964210 0
Q ss_pred HhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHH--------H---hcCCeEEEEecCCC
Q psy17467 167 MVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFA--------K---RHDMYYLETSAKAS 235 (730)
Q Consensus 167 ~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la--------k---~lg~~fvEtSAktG 235 (730)
...+..|+|.+ ....++.+++..++ + ..++.+++|||++|
T Consensus 287 ~~~l~~~fp~y-----------------------------~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~ 337 (362)
T 1zcb_A 287 VVSIKDYFLEF-----------------------------EGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT 337 (362)
T ss_dssp TCCGGGTCTTC-----------------------------CSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH
T ss_pred ccchhhcCccc-----------------------------cCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc
Confidence 00111222211 12235677787766 2 34678999999999
Q ss_pred CChHHHHHHHHHHHHHH
Q psy17467 236 DNVEKLFMQIAAELMEK 252 (730)
Q Consensus 236 ~GVeeLFe~Li~~l~e~ 252 (730)
.||+++|+++.+.+...
T Consensus 338 ~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 338 ENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999988654
No 177
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.7e-14 Score=164.80 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=65.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-------------------------------CCcceeeEEEEEEEeCC
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-------------------------------GATIGVDFMIKTVEINN 53 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-------------------------------~pTig~d~~~~~i~vdg 53 (730)
...+||+++|.+|||||||+++|++....... .+.++.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45689999999999999999999966332211 02223233333344444
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCC
Q psy17467 54 ERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 54 ~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~ 92 (730)
+.+.||||||+++|......+++.||++|+|+|+++.
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 6799999999999998888899999999999999873
No 178
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.48 E-value=5.7e-14 Score=170.10 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=108.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcC-------CCCC-------CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhh
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQG-------VFPP-------GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~-------~f~~-------~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~ 69 (730)
.+..++|+++|.+++|||||+++|++. .+.. ....+.|.+.....+.++.....+.||||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 345699999999999999999999863 1110 01123333333333444444578999999999999
Q ss_pred hhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCc-eEE
Q psy17467 70 RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALA-TAL 148 (730)
Q Consensus 70 ~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~P-VVL 148 (730)
......+++.+|++|+|+|+++....+. .+|+..+.. .++| +++
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~----------------------------------lgIP~IIV 417 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ----------------------------------VGVPYIIV 417 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH----------------------------------HTCSCEEE
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH----------------------------------cCCCeEEE
Confidence 8888888999999999999998765443 445544432 2456 678
Q ss_pred eccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcC----
Q psy17467 149 ASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD---- 224 (730)
Q Consensus 149 VGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg---- 224 (730)
++||+|+.+++... ....++.+++++..+
T Consensus 418 VINKiDLv~d~e~l-----------------------------------------------e~i~eEi~elLk~~G~~~~ 450 (1289)
T 3avx_A 418 FLNKCDMVDDEELL-----------------------------------------------ELVEMEVRELLSQYDFPGD 450 (1289)
T ss_dssp EEECCTTCCCHHHH-----------------------------------------------HHHHHHHHHHHHHTTSCTT
T ss_pred EEeecccccchhhH-----------------------------------------------HHHHHHHHHHHHhcccccc
Confidence 88999986422110 011245566666665
Q ss_pred -CeEEEEecCCC--------CChHHHHHHHHHHH
Q psy17467 225 -MYYLETSAKAS--------DNVEKLFMQIAAEL 249 (730)
Q Consensus 225 -~~fvEtSAktG--------~GVeeLFe~Li~~l 249 (730)
++++++||++| .||+++++.|.+.+
T Consensus 451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 451 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 58999999999 46888888776644
No 179
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.48 E-value=6.2e-14 Score=152.62 Aligned_cols=267 Identities=13% Similarity=0.028 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC-------------------eEEEEEEEeCCCchh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN-------------------ERIKLQIWDTAGQER 68 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg-------------------~~v~LqLwDTpG~e~ 68 (730)
++|+++|.||||||||+|++++........|..+.+.......+.+ ....+++|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997653333223222222222233322 235799999999876
Q ss_pred hh----hhh---HhhhccccEEEEEeecCCC----------CchhhhHHHHHHHH--------HHhcccceEEEEeccCc
Q psy17467 69 FR----SIT---QSYYRSAHALILVYDISCQ----------PTFDCLTDWLREIE--------EYASFKVLRVLVGGTSG 123 (730)
Q Consensus 69 ~~----sl~---~~~~r~ADaIILVyDvtd~----------eSfe~L~~wleeI~--------~~~~~~~piVLVg~k~d 123 (730)
.. .+. ..+++.+|++++|+|+++. ..+.++..+..++. +.... .....-+.+ .
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~-~~~~~~~~~-~ 159 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLER-LRKEARADR-E 159 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCG-G
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHH-HHhhhccch-h
Confidence 42 232 2458999999999999862 22333322222221 00000 000000000 0
Q ss_pred hhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCcccccccc
Q psy17467 124 LKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNK 203 (730)
Q Consensus 124 l~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK 203 (730)
.....+.+....- ....+.|+ ...++.+++. .....+.-....|.++|+||
T Consensus 160 ~~~~~~~l~~~~~--~L~~~~~~----~~~~~~~~~~-----------------------~~l~~~~~lt~KPvi~v~N~ 210 (368)
T 2dby_A 160 RLPLLEAAEGLYV--HLQEGKPA----RTFPPSEAVA-----------------------RFLKETPLLTAKPVIYVANV 210 (368)
T ss_dssp GHHHHHHHHHHHH--HHHTTCCG----GGSCCCHHHH-----------------------HHHHHSCCGGGSCEEEEEEC
T ss_pred HHHHHHHHHHHHH--HHhcCCCc----ccCCCCHHHH-----------------------HHHHHHhhhhcCCeEEeccc
Confidence 0000111111100 00011221 0123322211 12233344556788899999
Q ss_pred cccc--CC--CCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHHHHHHHHhhhcccc------ccccchhhhc
Q psy17467 204 IDRE--DR--EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMHDR------GVGMLTRIYN 273 (730)
Q Consensus 204 ~DL~--~R--~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~~~~~~~~~~------~~~~l~riy~ 273 (730)
+|.. +. ..-.+..+++++..|++++++||+++.++.++++.-....++...-.+ ...++ ..-.++++|+
T Consensus 211 ~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~-~gl~~li~~~~~~L~li~~ft 289 (368)
T 2dby_A 211 AEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQE-SGLQRLARAGYRALDLLTFFT 289 (368)
T ss_dssp CGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCS-CHHHHHHHHHHHHTTEEEEEE
T ss_pred cHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcch-hhHHHHHHHHHHHhCCEEEEC
Confidence 8743 21 234566788888889999999999877777666543222221100000 00000 1124566777
Q ss_pred ccccCCCCCCCCCccccchhhHHHHHH-hhcCCCCcee
Q psy17467 274 IKKACGDAKSKPSFLSDKSLESCIKQI-VKKFPNIDIK 310 (730)
Q Consensus 274 ~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~~p~~~~~ 310 (730)
.. ..-.+|-+++++++..+.|-. |.++...|+.
T Consensus 290 ~g----~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~ 323 (368)
T 2dby_A 290 AG----EKEVRAWTVRRGTKAPRAAGEIHSDMERGFIR 323 (368)
T ss_dssp ES----SSCEEEEEEETTCBHHHHHHHHCHHHHHSCCE
T ss_pred CC----CCCcceEEecCCCcHHHHHHhhHHHHHhhCeE
Confidence 43 345578889999999998887 9999998874
No 180
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.47 E-value=1.7e-13 Score=150.90 Aligned_cols=163 Identities=16% Similarity=0.178 Sum_probs=107.8
Q ss_pred CcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCC----------CCchhhhHHHHHHHHH
Q psy17467 38 ATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC----------QPTFDCLTDWLREIEE 107 (730)
Q Consensus 38 pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd----------~eSfe~L~~wleeI~~ 107 (730)
+|+|.+. ..+.+++ +.+++|||+|+++++++|..|+++++++|+|||+++ ..+|+++..|++.+..
T Consensus 203 ~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 203 LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp CCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ceeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 3555443 4566666 889999999999999999999999999999999999 8999999999988864
Q ss_pred HhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhh
Q psy17467 108 YASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187 (730)
Q Consensus 108 ~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~ 187 (730)
.. ..+++|++|+|||.|+.+..-. . .......++|.+..-...
T Consensus 279 ~~------------------------------~~~~~piiLvgNK~DL~~~ki~-~--~~~~l~~~fp~y~~~~~~---- 321 (402)
T 1azs_C 279 NR------------------------------WLRTISVILFLNKQDLLAEKVL-A--GKSKIEDYFPEFARYTTP---- 321 (402)
T ss_dssp CT------------------------------TCSSCCEEEEEECHHHHHHHHH-H--CSSCGGGTCGGGGTCCCC----
T ss_pred cc------------------------------cCCCCeEEEEEEChhhhhhhhc-c--cccchhhccccccccccc----
Confidence 32 1257899999999999642100 0 000112334433110000
Q ss_pred cccCCcCCccccccccccccCCCCChHHHHHHH-----Hh--------cCCeEEEEecCCCCChHHHHHHHHHHHHHHHH
Q psy17467 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFA-----KR--------HDMYYLETSAKASDNVEKLFMQIAAELMEKLA 254 (730)
Q Consensus 188 ~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~la-----k~--------lg~~fvEtSAktG~GVeeLFe~Li~~l~e~~~ 254 (730)
. +-.......-+.+++..++ .. .++.+++|||+++.||+++|..+.+.+.....
T Consensus 322 --------~-----~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 322 --------E-----DATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp --------S-----SCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------c-----ccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence 0 0000000001235566553 22 35678999999999999999999888765543
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=4.7e-13 Score=137.65 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=87.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhHhhhc------
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYR------ 78 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~-~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~~~~r------ 78 (730)
..+||+++|.+|||||||+++|++..+. ....+..+.......+.+++ ..+.||||||+.++......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4689999999999999999999988752 22234334445556666777 58999999999877665555543
Q ss_pred ---cccEEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 79 ---SAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 79 ---~ADaIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
.+|++|+|+|+++.. +... ..|+..+...... ....|+++|+||+|
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~-----------------------------~~~~~~ivv~nK~D 162 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK-----------------------------EIWCKTLLVLTHAQ 162 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG-----------------------------GGGGGEEEEEECTT
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch-----------------------------hhhcCEEEEEeCcc
Confidence 889999999998765 6544 4688887664311 12347889999999
Q ss_pred cc
Q psy17467 155 LD 156 (730)
Q Consensus 155 L~ 156 (730)
+.
T Consensus 163 l~ 164 (262)
T 3def_A 163 FS 164 (262)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 182
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.42 E-value=2.7e-13 Score=155.96 Aligned_cols=86 Identities=24% Similarity=0.246 Sum_probs=62.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCcceeeEEEEEE------------EeCCeEEEEEEEeCCCchhhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPG----QGATIGVDFMIKTV------------EINNERIKLQIWDTAGQERFR 70 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~----~~pTig~d~~~~~i------------~vdg~~v~LqLwDTpG~e~~~ 70 (730)
..+|+|+|.+|+|||||+++|++..+... ..++++..+..... .++.....+.||||||+++|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 47899999999999999999987644321 22344432221110 000011258999999999999
Q ss_pred hhhHhhhccccEEEEEeecCCC
Q psy17467 71 SITQSYYRSAHALILVYDISCQ 92 (730)
Q Consensus 71 sl~~~~~r~ADaIILVyDvtd~ 92 (730)
.++..+++.+|++|+|+|+++.
T Consensus 85 ~~~~r~~~~aD~aILVvDa~~G 106 (594)
T 1g7s_A 85 TLRKRGGALADLAILIVDINEG 106 (594)
T ss_dssp TSBCSSSBSCSEEEEEEETTTC
T ss_pred HHHHHHHhhCCEEEEEEECCCC
Confidence 9998899999999999999994
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.42 E-value=2.3e-13 Score=146.36 Aligned_cols=159 Identities=18% Similarity=0.220 Sum_probs=102.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEE---------------------------------------
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIK--------------------------------------- 47 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~--------------------------------------- 47 (730)
.-+|+|+|++|||||||++++++..+.+....+++......
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999887443322221100000
Q ss_pred -------------EEEe-CCeEEEEEEEeCCCchhh-------------hhhhHhhhccccEEEEEeecCCCCchhhhHH
Q psy17467 48 -------------TVEI-NNERIKLQIWDTAGQERF-------------RSITQSYYRSAHALILVYDISCQPTFDCLTD 100 (730)
Q Consensus 48 -------------~i~v-dg~~v~LqLwDTpG~e~~-------------~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~ 100 (730)
.+.+ ......+.+|||||..++ ..+...|++++|++|+|+|.++..... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 0111 011235899999998765 556778899999999999987654332 34
Q ss_pred HHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccc
Q psy17467 101 WLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARN 180 (730)
Q Consensus 101 wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~ 180 (730)
|+..+.... ..+.|+++|+||+|+.+.
T Consensus 192 ~~~l~~~~~-------------------------------~~~~~~i~V~nK~Dl~~~---------------------- 218 (360)
T 3t34_A 192 AIKISREVD-------------------------------PSGDRTFGVLTKIDLMDK---------------------- 218 (360)
T ss_dssp HHHHHHHSC-------------------------------TTCTTEEEEEECGGGCCT----------------------
T ss_pred HHHHHHHhc-------------------------------ccCCCEEEEEeCCccCCC----------------------
Confidence 444443321 135678888888888531
Q ss_pred hhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467 181 EACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 181 ~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
+....+.++.++..++..|+++|++++.|+++.+..+...
T Consensus 219 ----------------------------~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 219 ----------------------------GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp ----------------------------TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred ----------------------------cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence 1122233344445667889999999999998877665433
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.41 E-value=6.3e-13 Score=155.47 Aligned_cols=118 Identities=16% Similarity=0.212 Sum_probs=80.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEE-------EEEEEe-CCe----------------------
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFM-------IKTVEI-NNE---------------------- 54 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~-------~~~i~v-dg~---------------------- 54 (730)
..++|+|+|.+|||||||+|+|++..+.+ ...|++..... ..++.+ ++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 35899999999999999999999877533 33344310000 001111 000
Q ss_pred -----------------------E--EEEEEEeCCCchhh---hhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHH
Q psy17467 55 -----------------------R--IKLQIWDTAGQERF---RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE 106 (730)
Q Consensus 55 -----------------------~--v~LqLwDTpG~e~~---~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~ 106 (730)
. ..+.||||||.... ......+++.||++|+|+|++++.+..+...|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0 24899999997653 3455678999999999999999888877665544331
Q ss_pred HHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcch
Q psy17467 107 EYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDE 157 (730)
Q Consensus 107 ~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~ 157 (730)
. .+.|+++|+||+|+..
T Consensus 228 ~----------------------------------~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 228 G----------------------------------RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp T----------------------------------SCCCEEEEEECGGGGG
T ss_pred h----------------------------------hCCCEEEEEECccccc
Confidence 1 2457888999999864
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.40 E-value=4.8e-14 Score=162.13 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=47.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcCC-------------------------------CCCCCCCcceeeEEEEEEEeC
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGV-------------------------------FPPGQGATIGVDFMIKTVEIN 52 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~~-------------------------------f~~~~~pTig~d~~~~~i~vd 52 (730)
.+..++|+++|.+|+|||||+++|+... +.....+.++.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3456899999999999999999996421 001112233333333334334
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCC
Q psy17467 53 NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP 93 (730)
Q Consensus 53 g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~e 93 (730)
...+.||||||+.+|......+++.+|++|||+|+++..
T Consensus 254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~ 292 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN 292 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECC
T ss_pred --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc
Confidence 377999999999999888888899999999999999765
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.40 E-value=9.5e-13 Score=145.48 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh----hhhhhHhh---hcccc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER----FRSITQSY---YRSAH 81 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~----~~sl~~~~---~r~AD 81 (730)
.|++||++|||||||++++++........+..+.......+.+++ ...+.+||++|..+ +..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 479999999999999999998754333333333344445566654 24689999999743 22222233 45799
Q ss_pred EEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhHH
Q psy17467 82 ALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHV 161 (730)
Q Consensus 82 aIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~ 161 (730)
+++.|+|++ ...++++..|..++...... -.+.|.++++||.|+...
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~a-----------------------------L~~~P~ILVlNKlDl~~~--- 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPA-----------------------------LLRRPSLVALNKVDLLEE--- 284 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHH-----------------------------HHHSCEEEEEECCTTSCH---
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHH-----------------------------hhcCCEEEEEECCChhhH---
Confidence 999999998 77788888887776554210 023566666677777531
Q ss_pred HHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHHhcCCeEEEEecCCCCChHHH
Q psy17467 162 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241 (730)
Q Consensus 162 ~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeL 241 (730)
...++..+.++..++.++++||++++||+++
T Consensus 285 -------------------------------------------------~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 285 -------------------------------------------------EAVKALADALAREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp -------------------------------------------------HHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence 1113344455566789999999999999999
Q ss_pred HHHHHHHHH
Q psy17467 242 FMQIAAELM 250 (730)
Q Consensus 242 Fe~Li~~l~ 250 (730)
++.|.+.+.
T Consensus 316 ~~~i~~~l~ 324 (416)
T 1udx_A 316 KEALHALVR 324 (416)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998873
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.40 E-value=1.5e-12 Score=135.95 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF 32 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f 32 (730)
...+|+|+|.+|||||||+|++++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 357899999999999999999999876
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=2.7e-13 Score=149.91 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=85.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC--------CCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhh------
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ--------GATIGVDFMIKTVEINNERIKLQIWDTAGQERFR------ 70 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~--------~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~------ 70 (730)
+..++|+|+|++|||||||+++|++..+.... .++++.+.....+...+....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 45689999999999999999999987763221 2333322222222334445679999999975431
Q ss_pred -hh------------------hHhhhccccEEEEEeecCCC-CchhhhH-HHHHHHHHHhcccceEEEEeccCchhhHHH
Q psy17467 71 -SI------------------TQSYYRSAHALILVYDISCQ-PTFDCLT-DWLREIEEYASFKVLRVLVGGTSGLKIVNE 129 (730)
Q Consensus 71 -sl------------------~~~~~r~ADaIILVyDvtd~-eSfe~L~-~wleeI~~~~~~~~piVLVg~k~dl~~~~~ 129 (730)
.+ ...++.++++.+++|+++.. .++..+. .|+..+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----------------------- 165 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----------------------- 165 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----------------------
Confidence 11 12345667777777777654 5676654 4555441
Q ss_pred HHhhhcccccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCC
Q psy17467 130 MASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDR 209 (730)
Q Consensus 130 i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R 209 (730)
.+.|+++|+||+|+.+.....
T Consensus 166 ------------~~v~iIlVinK~Dll~~~ev~----------------------------------------------- 186 (418)
T 2qag_C 166 ------------EKVNIIPLIAKADTLTPEECQ----------------------------------------------- 186 (418)
T ss_dssp ------------TTSEEEEEEESTTSSCHHHHH-----------------------------------------------
T ss_pred ------------ccCcEEEEEEcccCccHHHHH-----------------------------------------------
Confidence 356788889999986432110
Q ss_pred CCChHHHHHHHHhcCCeEEEEecCCCCChHHHHHHHHHH
Q psy17467 210 EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 210 ~Vs~ee~~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
.-.+++.+.+...|+.++++||+++.|++++|..+...
T Consensus 187 -~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 187 -QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp -HHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred -HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 01256777788889999999999999999988777654
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.38 E-value=2e-12 Score=150.48 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=66.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCCCC-------------CC-----CcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFPPG-------------QG-----ATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~-------------~~-----pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
+...+|+|+|.+|+|||||+++|++...... +. ..++.......+...+ +.++||||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence 3457899999999999999999984332211 00 1122223333444444 78999999999
Q ss_pred hhhhhhhHhhhccccEEEEEeecCCCCchhh
Q psy17467 67 ERFRSITQSYYRSAHALILVYDISCQPTFDC 97 (730)
Q Consensus 67 e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~ 97 (730)
.++......+++.+|++++|+|+++..+.+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt 115 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT 115 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH
Confidence 9998888999999999999999988755443
No 190
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.37 E-value=3.4e-12 Score=131.69 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=81.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhhH-------hh-
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPP-GQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQ-------SY- 76 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~-~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~~-------~~- 76 (730)
..++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++ +.+.||||||..++..... .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 46899999999999999999999887632 2223333233333444455 7899999999876543322 11
Q ss_pred -hccccEEEEEeecCCCCchhhh-HHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCC
Q psy17467 77 -YRSAHALILVYDISCQPTFDCL-TDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTD 154 (730)
Q Consensus 77 -~r~ADaIILVyDvtd~eSfe~L-~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~D 154 (730)
.+.+|++|+|+|++.. ++... ..|+..+...... ....|+++|+||+|
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~-----------------------------~~~~~iivV~nK~D 165 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGK-----------------------------GIWNKAIVALTHAQ 165 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCG-----------------------------GGGGGEEEEEECCS
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCc-----------------------------ccccCEEEEEECcc
Confidence 3479999999999764 46544 4677777554210 12368899999999
Q ss_pred cch
Q psy17467 155 LDE 157 (730)
Q Consensus 155 L~~ 157 (730)
+.+
T Consensus 166 l~~ 168 (270)
T 1h65_A 166 FSP 168 (270)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 191
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.36 E-value=3.9e-12 Score=148.70 Aligned_cols=96 Identities=23% Similarity=0.242 Sum_probs=70.9
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcC--CCC------C------------CCCCcceeeEEEEEEEeCCeEEEEEEEeC
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQG--VFP------P------------GQGATIGVDFMIKTVEINNERIKLQIWDT 63 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~------~------------~~~pTig~d~~~~~i~vdg~~v~LqLwDT 63 (730)
.+...+|+|+|.+|+|||||+++|+.. .+. . ....|++ .....+.+++ +.+.||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~~--~~i~liDT 84 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWKD--HRINIIDT 84 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETT--EEEEEECC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEECC--eEEEEEEC
Confidence 356789999999999999999999831 110 0 1112222 2233444555 78999999
Q ss_pred CCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHH
Q psy17467 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLR 103 (730)
Q Consensus 64 pG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wle 103 (730)
||+.+|...+..+++.+|++|+|+|+++..+++....|..
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~ 124 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ 124 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH
Confidence 9999999999999999999999999999988887765643
No 192
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.35 E-value=1.7e-13 Score=135.87 Aligned_cols=56 Identities=25% Similarity=0.188 Sum_probs=43.1
Q ss_pred CccccccccccccC-CCCChHHHHHHHHhc--CCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467 195 NIHCMARNKIDRED-REIPTEVGEDFAKRH--DMYYLETSAKASDNVEKLFMQIAAELM 250 (730)
Q Consensus 195 ~~~ivVgNK~DL~~-R~Vs~ee~~~lak~l--g~~fvEtSAktG~GVeeLFe~Li~~l~ 250 (730)
.|.++|+||+|+.. +.+..+++.++++.+ ++++++|||++|.|++++|+.+.+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 45667777777643 235667777777754 679999999999999999999988764
No 193
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.34 E-value=3.5e-12 Score=144.91 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=61.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCC--------------C------CCcceeeEE--EEEEEeCCeEEEEEEEeC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPG--------------Q------GATIGVDFM--IKTVEINNERIKLQIWDT 63 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~--------------~------~pTig~d~~--~~~i~vdg~~v~LqLwDT 63 (730)
...+|+|+|.+|||||||+++|+...-... . ..+.|.+.. ...+.+++ +.+.||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 468999999999999999999986311100 0 011121111 12334444 78999999
Q ss_pred CCchhhhhhhHhhhccccEEEEEeecCCCCc
Q psy17467 64 AGQERFRSITQSYYRSAHALILVYDISCQPT 94 (730)
Q Consensus 64 pG~e~~~sl~~~~~r~ADaIILVyDvtd~eS 94 (730)
||+.+|......+++.+|++|+|+|+++...
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence 9999998888889999999999999998643
No 194
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=99.34 E-value=3.8e-13 Score=160.71 Aligned_cols=87 Identities=61% Similarity=1.087 Sum_probs=76.2
Q ss_pred HHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHHhhcCCCCceee----eccccccchhhHHHhHh
Q psy17467 253 LAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIKS----VSGISQIRSDIVKSLSL 328 (730)
Q Consensus 253 ~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~~k~~p~~~~~~----~~~~~~~~~~~~~~l~~ 328 (730)
..++.....+++.|.++|+|+.++.|++.+.+|.+++++...+.++.+.|+||+.+.+. ...+...++++++.|+.
T Consensus 13 laEkl~iLn~r~~g~LtrlYnikk~~~~~k~kp~fl~dk~~e~~iK~i~kKFP~id~~~~~~~~~~~~~~~~ei~~~L~~ 92 (1128)
T 3p8c_B 13 LAEKLTILNDRGVGMLTRLYNIKKACGDPKAKPSYLIDKNLESAVKFIVRKFPAVETRNNNQQLAQLQKEKSEILKNLAL 92 (1128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSCGGGTCTTTHHHHHHHHHHTTCCC----CCTTHHHHHTHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcCChhhhHHHHHHHHhcCCCCCcccccccchHHHHHHHHHHHHHHH
Confidence 34455566778899999999999999999999999999999999999999999999987 55777889999999999
Q ss_pred hhhhhhccCCc
Q psy17467 329 YYYTFVDLLHF 339 (730)
Q Consensus 329 ~~~~~~~~~~~ 339 (730)
||++|+|+++|
T Consensus 93 yY~tf~Dl~df 103 (1128)
T 3p8c_B 93 YYFTFVDVMEF 103 (1128)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999999
No 195
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=142.32 Aligned_cols=260 Identities=12% Similarity=0.041 Sum_probs=127.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchhhh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQERFR 70 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~~~ 70 (730)
..++|+++|.||||||||+|++++..+.....|+.+.++....+.+.+. ...+++|||||..+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3478999999999999999999998776666677776666677776543 2359999999987654
Q ss_pred h-------hhHhhhccccEEEEEeecCCCCchhhhHH----------HHHHHHHHhcccceEEEEeccCchhhHHHHHhh
Q psy17467 71 S-------ITQSYYRSAHALILVYDISCQPTFDCLTD----------WLREIEEYASFKVLRVLVGGTSGLKIVNEMASA 133 (730)
Q Consensus 71 s-------l~~~~~r~ADaIILVyDvtd~eSfe~L~~----------wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~ 133 (730)
+ .+..+++++|++++|+|+++..++..+.. ...++.- .|.+.+...+..
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l--------------~d~~~~~k~~~~ 166 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQL--------------KDEEMIGPIIDK 166 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHH--------------HHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhh--------------hhHHHHHHhhhh
Confidence 3 34567899999999999998766543321 1111100 000001000000
Q ss_pred hcccccCCCCCceEEeccCCCcchhhHHHH----HHHHhhhhhc-ccccccchhhhhhhcccCCcCCccccccccccc--
Q psy17467 134 AGLLCTVDPALATALASDKTDLDEDEHVLA----CLLMVFVAVC-IPKLARNEACFYLASLEGHSNNIHCMARNKIDR-- 206 (730)
Q Consensus 134 ~g~~~~~~~~~PVVLVGNK~DL~~~e~~~~----~l~~~~~a~~-~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL-- 206 (730)
.. ..+.- -|.|..... ...+. .|+-...... .+.+...+.- ......-....|.+.+.|+.+.
T Consensus 167 ~~-------k~~~~-~g~~~~~~~-~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e-~i~~~~llt~KPviy~~Nv~e~~~ 236 (396)
T 2ohf_A 167 LE-------KVAVR-GGDKKLKPE-YDIMCKVKSWVIDQKKPVRFYHDWNDKEIE-VLNKHLFLTSKPMVYLVNLSEKDY 236 (396)
T ss_dssp TC-------SCC---------CCH-HHHHHHHHHHTTC--CCGGGCCCCCHHHHH-HHHHHCCGGGSCEEEEEECCHHHH
T ss_pred hh-------hhhhc-ccchhhhhH-HHHHHHHHHHHHhcCcchhhcccCCHHHHH-HHHHHHHHhCCceEEEEEecHHHh
Confidence 00 00000 001110000 00000 0000000000 1111111111 1133444567899999999742
Q ss_pred cC-CCCChHHHHHHHHh--cCCeEEEEecCCC---------------------CChHHHHHHHHHHHHHHHHHHhhhccc
Q psy17467 207 ED-REIPTEVGEDFAKR--HDMYYLETSAKAS---------------------DNVEKLFMQIAAELMEKLAEKLTIMHD 262 (730)
Q Consensus 207 ~~-R~Vs~ee~~~lak~--lg~~fvEtSAktG---------------------~GVeeLFe~Li~~l~e~~~~~~~~~~~ 262 (730)
.. ...-.+..++++.. .++.++.+||+.. .|++.+...+++.+
T Consensus 237 ~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L------------- 303 (396)
T 2ohf_A 237 IRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAAL------------- 303 (396)
T ss_dssp HHTCCHHHHHHHHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHT-------------
T ss_pred cccccHHHHHHHHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHh-------------
Confidence 21 11112334555554 3688999999853 34555555555544
Q ss_pred cccccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhcCCCCcee
Q psy17467 263 RGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKKFPNIDIK 310 (730)
Q Consensus 263 ~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~~p~~~~~ 310 (730)
.+++.||..+ ...++-++.++++..+.|-. |.++...|+.
T Consensus 304 ----~li~~fT~g~----~evrawti~~g~ta~~aAg~IH~D~~~gFi~ 344 (396)
T 2ohf_A 304 ----QLEYFFTAGP----DEVRAWTIRKGTKAPQAAGKIHTDFEKGFIM 344 (396)
T ss_dssp ----TEEEEEEESS----SEEEEEEEETTCBHHHHHHTTCTHHHHHEEE
T ss_pred ----CCEEEECCCC----CcceeEEecCCCcHHHHHhhhHHHHHhcceE
Confidence 6777777653 23478889999999998887 9999988875
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.31 E-value=2.1e-13 Score=146.57 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=25.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFP 33 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~ 33 (730)
...+|+|+|++|||||||+|+|++..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3579999999999999999999998874
No 197
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.28 E-value=2.2e-11 Score=142.43 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=70.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHc--CCCCC-----------CC-----CCcceeeEEEEEEEeCCeEEEEEEEeCCCc
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQ--GVFPP-----------GQ-----GATIGVDFMIKTVEINNERIKLQIWDTAGQ 66 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~--~~f~~-----------~~-----~pTig~d~~~~~i~vdg~~v~LqLwDTpG~ 66 (730)
+...+|+|+|.+|||||||+++|+. +.+.. .+ .+.++.......+.+++ +.+.||||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 4578999999999999999999984 22210 00 01111122233455555 78999999999
Q ss_pred hhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHH
Q psy17467 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWL 102 (730)
Q Consensus 67 e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wl 102 (730)
.++...+..+++.+|++|+|+|+++..+++....|.
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~ 121 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR 121 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH
Confidence 999888899999999999999999988887765554
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.28 E-value=4.6e-12 Score=125.01 Aligned_cols=41 Identities=17% Similarity=0.017 Sum_probs=30.6
Q ss_pred ChHHHHHHHHhc--CCeEEEEecCCCCChHHHHHHHHHHHHHH
Q psy17467 212 PTEVGEDFAKRH--DMYYLETSAKASDNVEKLFMQIAAELMEK 252 (730)
Q Consensus 212 s~ee~~~lak~l--g~~fvEtSAktG~GVeeLFe~Li~~l~e~ 252 (730)
..++..+.++.. +++++++||++|.|++++|+.+.+.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 173 DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 345555555544 47899999999999999999998877443
No 199
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.27 E-value=5.6e-11 Score=139.25 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=69.7
Q ss_pred CcceeEEEEEcCCCCCHHHHHHHHHcC--CCCC-----------CC-----CCcceeeEEEEEEEeC-----CeEEEEEE
Q psy17467 4 YKFLFKVVLVGNAGVGKTCLVRRFTQG--VFPP-----------GQ-----GATIGVDFMIKTVEIN-----NERIKLQI 60 (730)
Q Consensus 4 ~~~~iKIvVLG~pnVGKSSLLnrLl~~--~f~~-----------~~-----~pTig~d~~~~~i~vd-----g~~v~LqL 60 (730)
.+...+|+|+|..|+|||||+++|+.. .+.. .+ ...++.......+.++ +..+.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 355689999999999999999999742 1110 00 0111222222233333 34488999
Q ss_pred EeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHH
Q psy17467 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101 (730)
Q Consensus 61 wDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~w 101 (730)
|||||+.+|...+..+++.+|++|+|+|+++..+.+....|
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~ 127 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence 99999999988889999999999999999988766655444
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.19 E-value=2.3e-11 Score=145.14 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=86.1
Q ss_pred CCcceeEEEEEcCCCCCHHHHHHHHHcC------------CCCC----CCC--CcceeeEEEEEEE------------eC
Q psy17467 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQG------------VFPP----GQG--ATIGVDFMIKTVE------------IN 52 (730)
Q Consensus 3 ~~~~~iKIvVLG~pnVGKSSLLnrLl~~------------~f~~----~~~--pTig~d~~~~~i~------------vd 52 (730)
..+...||+|+|..|||||||+++|+.. .+.. ... .|++.......+. .+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 4556789999999999999999999863 1110 001 1222222222222 23
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHh
Q psy17467 53 NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMAS 132 (730)
Q Consensus 53 g~~v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~ 132 (730)
+..+.++||||||+.+|...+..+++.+|++|+|+|+++..+++....|.....
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-------------------------- 148 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG-------------------------- 148 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------------------------
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------------------------
Confidence 457899999999999999999999999999999999999999988765643321
Q ss_pred hhcccccCCCCCceEEeccCCCcc
Q psy17467 133 AAGLLCTVDPALATALASDKTDLD 156 (730)
Q Consensus 133 ~~g~~~~~~~~~PVVLVGNK~DL~ 156 (730)
.+.|+++++||+|+.
T Consensus 149 ---------~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 149 ---------ERIKPVVVINKVDRA 163 (842)
T ss_dssp ---------TTCEEEEEEECHHHH
T ss_pred ---------cCCCeEEEEECCCcc
Confidence 356788888999986
No 201
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.17 E-value=4e-11 Score=129.11 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=25.0
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467 224 DMYYLETSAKASDNVEKLFMQIAAELME 251 (730)
Q Consensus 224 g~~fvEtSAktG~GVeeLFe~Li~~l~e 251 (730)
++++++|||++|.||+++++.|.+.+..
T Consensus 257 ~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 257 RPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999887744
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.14 E-value=5.7e-11 Score=135.50 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=83.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCcceeeEEEEEEEeCCe---------------------------
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQGVFP---PGQGATIGVDFMIKTVEINNE--------------------------- 54 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~~f~---~~~~pTig~d~~~~~i~vdg~--------------------------- 54 (730)
+...+|+|+|.+|||||||+|+|++..+. ....|+.... . .+..+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~--~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF--V-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE--E-EEECCSSSEEECCC------------------CC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE--E-EEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 44689999999999999999999998863 3444443211 0 1111000
Q ss_pred ---E----------EEEEEEeCCCchh-----------hhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhc
Q psy17467 55 ---R----------IKLQIWDTAGQER-----------FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS 110 (730)
Q Consensus 55 ---~----------v~LqLwDTpG~e~-----------~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~ 110 (730)
. ..+.||||||... +......++..+|++|+|+|+++....+....|+..+..
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--- 216 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--- 216 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---
Confidence 0 2589999999864 456667788999999999999987666666666655422
Q ss_pred ccceEEEEeccCchhhHHHHHhhhcccccCCCCCceEEeccCCCcchhhH
Q psy17467 111 FKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 160 (730)
Q Consensus 111 ~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~PVVLVGNK~DL~~~e~ 160 (730)
.+.|+++|+||+|+.+.++
T Consensus 217 -------------------------------~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 217 -------------------------------HEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp -------------------------------CGGGEEEEEECGGGSCHHH
T ss_pred -------------------------------cCCCEEEEEECCCccCHHH
Confidence 2467899999999986443
No 203
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=1.6e-10 Score=126.91 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=149.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCe---------------EEEEEEEeCCCchh--
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNE---------------RIKLQIWDTAGQER-- 68 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~---------------~v~LqLwDTpG~e~-- 68 (730)
-.+|.++|.+|||||||+|++++... .....|+++.++....+.+.+. ...+.+||++|...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 46899999999999999999999876 6666677766676777777652 14689999999543
Q ss_pred -----hhhhhHhhhccccEEEEEeecCCCCch----------hhh---HH----H--------HHHHHHH-hcccceEEE
Q psy17467 69 -----FRSITQSYYRSAHALILVYDISCQPTF----------DCL---TD----W--------LREIEEY-ASFKVLRVL 117 (730)
Q Consensus 69 -----~~sl~~~~~r~ADaIILVyDvtd~eSf----------e~L---~~----w--------leeI~~~-~~~~~piVL 117 (730)
....+...++.+|++++|+|+.+.... .++ .+ | ++.+... ...+..+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti-- 177 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL-- 177 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--
Confidence 222344567899999999998752111 111 11 1 1111111 1000000
Q ss_pred EeccCchhhHHHHHhhhcccccCCCC-CceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCc
Q psy17467 118 VGGTSGLKIVNEMASAAGLLCTVDPA-LATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNI 196 (730)
Q Consensus 118 Vg~k~dl~~~~~i~~~~g~~~~~~~~-~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~ 196 (730)
+ .-.+..+.++.....- ....+ .++. .+ +..+++ . .....+......|
T Consensus 178 ~--sh~~~~~~~l~~~i~~--~L~~G~~~~~-~~---~~~~~e----------------------~-e~i~~~~~lt~kp 226 (392)
T 1ni3_A 178 E--MKAKKEEQAIIEKVYQ--YLTETKQPIR-KG---DWSNRE----------------------V-EIINSLYLLTAKP 226 (392)
T ss_dssp S--HHHHHHHHHHHHHHHH--HHHTTCSCGG-GS---CCCHHH----------------------H-HHHHTTCCGGGSC
T ss_pred c--cccHHHHHHHHHHHHH--HhccCCceee-cC---CCCHHH----------------------H-HHHHHHhhhccCc
Confidence 0 0112222222222210 00111 1111 01 111110 0 1111334456778
Q ss_pred ccccccccccc---CCCCChHHHHHHHHhcC--CeEEEEecCC---------------------CCChHHHHHHHHHHHH
Q psy17467 197 HCMARNKIDRE---DREIPTEVGEDFAKRHD--MYYLETSAKA---------------------SDNVEKLFMQIAAELM 250 (730)
Q Consensus 197 ~ivVgNK~DL~---~R~Vs~ee~~~lak~lg--~~fvEtSAkt---------------------G~GVeeLFe~Li~~l~ 250 (730)
.+.+.|+.|.. +...-.+..++++...+ ..++.+||+. +.|++.+....++.+
T Consensus 227 ~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L- 305 (392)
T 1ni3_A 227 VIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNAL- 305 (392)
T ss_dssp EEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHT-
T ss_pred eEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHh-
Confidence 88899998842 11222456677777765 7899999875 577888888877776
Q ss_pred HHHHHHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHHHH-hhcCCCCcee
Q psy17467 251 EKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQI-VKKFPNIDIK 310 (730)
Q Consensus 251 e~~~~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~~~-~k~~p~~~~~ 310 (730)
.++..|+..+ ...++-+++++.+....|-. |.+|...|+.
T Consensus 306 ----------------~l~~~ft~g~----~e~rawti~~G~~a~~aag~IH~d~~~gfi~ 346 (392)
T 1ni3_A 306 ----------------NLINYFTCGE----DEVRSWTIRKGTKAPQAAGVIHTDFEKAFVV 346 (392)
T ss_dssp ----------------TEEEEEECCS----SEEEEEEEETTCBHHHHHHHHCHHHHHTCSE
T ss_pred ----------------CCEEEECCCC----CcceeEEeCCCCcHHHHccccchhhhhccEE
Confidence 7888888543 23477888999999988876 9999998875
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.00 E-value=1.9e-09 Score=116.22 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467 224 DMYYLETSAKASDNVEKLFMQIAAELM 250 (730)
Q Consensus 224 g~~fvEtSAktG~GVeeLFe~Li~~l~ 250 (730)
+.+++.+||++|.|++++++.|.+.+.
T Consensus 252 ~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 252 KPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999988763
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.98 E-value=7.5e-10 Score=118.64 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=24.9
Q ss_pred EEEEEEeCCCchhhhhhhHhhhccccEEEEEeecCCCCc
Q psy17467 56 IKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPT 94 (730)
Q Consensus 56 v~LqLwDTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eS 94 (730)
+.+.||||||...... ...+.+|++++|+|.++...
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~ 184 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDD 184 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-----
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHH
Confidence 6799999999754332 34689999999999876543
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.96 E-value=2.6e-09 Score=108.14 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.9
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 225 MYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 225 ~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
++++++||++|.|++++++++.+.+
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHh
Confidence 4799999999999999999998776
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.92 E-value=1.8e-09 Score=114.11 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=76.8
Q ss_pred chhhhhhhHhhhccccEEEEEeecCCCC-chhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCC
Q psy17467 66 QERFRSITQSYYRSAHALILVYDISCQP-TFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPAL 144 (730)
Q Consensus 66 ~e~~~sl~~~~~r~ADaIILVyDvtd~e-Sfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~ 144 (730)
++++..+.+.+++++|++|+|||++++. +++.+..|+..+.. .+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----------------------------------~~~ 111 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----------------------------------FKV 111 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----------------------------------TTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----------------------------------CCC
Confidence 5677778888999999999999999986 89988899887643 356
Q ss_pred ceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCC-hHHHHHHHHhc
Q psy17467 145 ATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIP-TEVGEDFAKRH 223 (730)
Q Consensus 145 PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs-~ee~~~lak~l 223 (730)
|+++|+||+|+.++.. +. .++..++++..
T Consensus 112 ~~ilV~NK~DL~~~~~--------------------------------------------------v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 112 EPVIVFNKIDLLNEEE--------------------------------------------------KKELERWISIYRDA 141 (302)
T ss_dssp EEEEEECCGGGCCHHH--------------------------------------------------HHHHHHHHHHHHHT
T ss_pred CEEEEEEcccCCCccc--------------------------------------------------cHHHHHHHHHHHHC
Confidence 7788889998864221 11 24556667778
Q ss_pred CCeEEEEecCCCCChHHHHHHHH
Q psy17467 224 DMYYLETSAKASDNVEKLFMQIA 246 (730)
Q Consensus 224 g~~fvEtSAktG~GVeeLFe~Li 246 (730)
|++++++||++|.|++++|+.+.
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHhhcc
Confidence 99999999999999999998764
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.85 E-value=2.1e-09 Score=126.57 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF 32 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f 32 (730)
.+-+|+|+|.+++|||||+|++++..+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 346899999999999999999999877
No 209
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.85 E-value=1.9e-08 Score=114.84 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=67.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC-------------C-----CCC----CCCCcceeeEEEEEEEeCCeEEEEEEEeCC
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG-------------V-----FPP----GQGATIGVDFMIKTVEINNERIKLQIWDTA 64 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~-------------~-----f~~----~~~pTig~d~~~~~i~vdg~~v~LqLwDTp 64 (730)
.=+|+|+|..++|||||..+++.. . +.. .....+++......+.+++ +.++|+|||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTP 108 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDTP 108 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeCC
Confidence 347999999999999999999621 0 000 0011111122233455666 789999999
Q ss_pred CchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHH
Q psy17467 65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLR 103 (730)
Q Consensus 65 G~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wle 103 (730)
|+.+|..-....++-+|++|+|+|+.+.-.-+...-|..
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~ 147 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV 147 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH
Confidence 999999988999999999999999998777766665633
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.80 E-value=1.9e-09 Score=115.71 Aligned_cols=81 Identities=9% Similarity=-0.095 Sum_probs=44.9
Q ss_pred CCeEEEEecCCCCChHHHHHHHHHHHHHHHH-----HHhhhccccccccchhhhcccccCCCCCCCCCccccchhhHHHH
Q psy17467 224 DMYYLETSAKASDNVEKLFMQIAAELMEKLA-----EKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIK 298 (730)
Q Consensus 224 g~~fvEtSAktG~GVeeLFe~Li~~l~e~~~-----~~~~~~~~~~~~~l~riy~~~~~~~~~~s~P~~l~~~~~~~~~~ 298 (730)
+.+++.+||++|.|++++++.|.+....... .........+...+.+-.-. ..-++|+...++..+..++
T Consensus 234 ~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~ 308 (337)
T 2qm8_A 234 TPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQDVKWMWALVHERLH-----QRLVGSAEVRQATAEAERA 308 (337)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-----HHHTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCcchhhHHHHHHHH
Confidence 3568899999999999999999876542211 00011111111111111000 0113455556666677777
Q ss_pred HHhhcCCCCce
Q psy17467 299 QIVKKFPNIDI 309 (730)
Q Consensus 299 ~~~k~~p~~~~ 309 (730)
.+.+..||.+.
T Consensus 309 ~~~~~~~p~~~ 319 (337)
T 2qm8_A 309 VAGGEHSPAAG 319 (337)
T ss_dssp HHTTSSCHHHH
T ss_pred HHcCCCCHHHH
Confidence 77888887654
No 211
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.62 E-value=1.3e-08 Score=118.06 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--CCCC------C-----CCCC---cceeeEEEEEEEeCCeEEEEEEEeCCCchhhhh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ--GVFP------P-----GQGA---TIGVDFMIKTVEINNERIKLQIWDTAGQERFRS 71 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~--~~f~------~-----~~~p---Tig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~s 71 (730)
-+|+|+|..++|||||..+++. +... . ++.+ .-|++.....+.+..+.+.++|+||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3689999999999999999863 1110 0 0000 001222222233333447899999999999999
Q ss_pred hhHhhhccccEEEEEeecCCCCchhhhHHHH
Q psy17467 72 ITQSYYRSAHALILVYDISCQPTFDCLTDWL 102 (730)
Q Consensus 72 l~~~~~r~ADaIILVyDvtd~eSfe~L~~wl 102 (730)
-....++-+|++|+|+|+.+.-.-+...-|.
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~ 113 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFH 113 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHH
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH
Confidence 8899999999999999999876655544443
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.47 E-value=1.1e-06 Score=102.98 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=67.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHcC--------CCCC--CCC--------CcceeeEEEEEEEeCC-----eEEEEEEE
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFTQG--------VFPP--GQG--------ATIGVDFMIKTVEINN-----ERIKLQIW 61 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl~~--------~f~~--~~~--------pTig~d~~~~~i~vdg-----~~v~LqLw 61 (730)
+..=+|+|+|..++|||||..+|+.. .... .+. ..+++......+.+.+ +.+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 34458999999999999999998621 1110 010 1111111223344432 35889999
Q ss_pred eCCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHH
Q psy17467 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLRE 104 (730)
Q Consensus 62 DTpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wlee 104 (730)
||||+-+|..-....++-+|++|+|+|+.+.-.-+...-|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a 133 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA 133 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH
Confidence 9999999999889999999999999999987766665545444
No 213
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.36 E-value=2.6e-07 Score=93.80 Aligned_cols=107 Identities=11% Similarity=0.002 Sum_probs=65.8
Q ss_pred CCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCC
Q psy17467 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPA 143 (730)
Q Consensus 64 pG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~ 143 (730)
+|++.++.+|+.||.++|++|+|+|.+|++-++ .++.+.++...... .-.-.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~e--------------------------e~~L~g 162 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDP--------------------------AFGSSG 162 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCT--------------------------TSSCSC
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcc--------------------------hhhhCC
Confidence 488899999999999999999999999987665 44444333322100 000156
Q ss_pred CceEEeccCC-CcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH-
Q psy17467 144 LATALASDKT-DLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK- 221 (730)
Q Consensus 144 ~PVVLVGNK~-DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak- 221 (730)
+|++|.+||. |+.. ..+..+..+...
T Consensus 163 apLLVlANKqqDlp~----------------------------------------------------Ams~~EI~e~L~L 190 (227)
T 3l82_B 163 RPLLVLSCISQGDVK----------------------------------------------------RMPCFYLAHELHL 190 (227)
T ss_dssp SCEEEEEEESSTTSC----------------------------------------------------BCCHHHHHHHTTG
T ss_pred CeEEEEeCCCcCccC----------------------------------------------------CCCHHHHHHHcCC
Confidence 7888888885 5531 112222211110
Q ss_pred ---hcCCeEEEEecCCCCChHHHHHHHHHHH
Q psy17467 222 ---RHDMYYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 222 ---~lg~~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
.....+..|||++|+|+.+.++|+.+.+
T Consensus 191 ~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 191 NLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp GGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred cCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 1345689999999999999999998766
No 214
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.20 E-value=1.2e-06 Score=92.67 Aligned_cols=109 Identities=12% Similarity=0.001 Sum_probs=70.5
Q ss_pred CCCchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCC
Q psy17467 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDP 142 (730)
Q Consensus 63 TpG~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~ 142 (730)
.+|++..+.+|+.|+.++|++|+|+|.+|++.++ .++.+.++.... +... .-.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL----------------------~e~~----~l~ 246 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMT----------------------DPAF----GSS 246 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHH----------------------CHHH----HCT
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHh----------------------cchh----hcC
Confidence 4688899999999999999999999999998776 444333332211 0000 014
Q ss_pred CCceEEeccC-CCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHHHHHHH
Q psy17467 143 ALATALASDK-TDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAK 221 (730)
Q Consensus 143 ~~PVVLVGNK-~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~~~lak 221 (730)
++|++|.+|| .|+.. ..+..+..+...
T Consensus 247 ~apLLVfANKkQDlp~----------------------------------------------------Ams~~EI~e~L~ 274 (312)
T 3l2o_B 247 GRPLLVLSCISQGDVK----------------------------------------------------RMPCFYLAHELH 274 (312)
T ss_dssp TCCEEEEEEESSTTSC----------------------------------------------------BCCHHHHHHHTT
T ss_pred CCeEEEEeCCcccccC----------------------------------------------------CCCHHHHHHHcC
Confidence 6788888886 46631 112222211110
Q ss_pred ----hcCCeEEEEecCCCCChHHHHHHHHHHHH
Q psy17467 222 ----RHDMYYLETSAKASDNVEKLFMQIAAELM 250 (730)
Q Consensus 222 ----~lg~~fvEtSAktG~GVeeLFe~Li~~l~ 250 (730)
.....+..|||++|+|+.+.++|+.+.+.
T Consensus 275 L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 275 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred CccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 12346899999999999999999998773
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.09 E-value=5.3e-06 Score=89.97 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=69.2
Q ss_pred CchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCC
Q psy17467 65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPAL 144 (730)
Q Consensus 65 G~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~ 144 (730)
..++|.+..+.+++.+|++|+|+|++++. ..|..++.+.. .+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--------------------------------~~~ 97 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--------------------------------GNN 97 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--------------------------------SSS
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--------------------------------CCC
Confidence 45788999999999999999999998742 44555554432 256
Q ss_pred ceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH----HHHH
Q psy17467 145 ATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG----EDFA 220 (730)
Q Consensus 145 PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~----~~la 220 (730)
|+++|+||+|+.+ +.+..++. +.++
T Consensus 98 p~ilV~NK~DL~~---------------------------------------------------~~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 98 KVLLVGNKADLIP---------------------------------------------------KSVKHDKVKHWMRYSA 126 (368)
T ss_dssp CEEEEEECGGGSC---------------------------------------------------TTSCHHHHHHHHHHHH
T ss_pred cEEEEEEChhcCC---------------------------------------------------cccCHHHHHHHHHHHH
Confidence 7778888888743 12222333 3346
Q ss_pred HhcCC---eEEEEecCCCCChHHHHHHHHHH
Q psy17467 221 KRHDM---YYLETSAKASDNVEKLFMQIAAE 248 (730)
Q Consensus 221 k~lg~---~fvEtSAktG~GVeeLFe~Li~~ 248 (730)
+..|+ .++++||++|.|++++++.+.+.
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 67787 79999999999999999988654
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.87 E-value=2.1e-05 Score=85.27 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=67.9
Q ss_pred CchhhhhhhHhhhccccEEEEEeecCCCCchhhhHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcccccCCCCC
Q psy17467 65 GQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTVDPAL 144 (730)
Q Consensus 65 G~e~~~sl~~~~~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~~~~~~~~~ 144 (730)
.+++|.+..+.+++.++++|+|+|++++.+ .|.+++.+.. .+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--------------------------------~~~ 99 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--------------------------------ADN 99 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--------------------------------TTS
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--------------------------------CCC
Confidence 578899999999999999999999998763 3333333221 256
Q ss_pred ceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH----HHHH
Q psy17467 145 ATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG----EDFA 220 (730)
Q Consensus 145 PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~----~~la 220 (730)
|+++|+||+|+.+. .+..+.. ..++
T Consensus 100 piilV~NK~DLl~~---------------------------------------------------~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 100 PILLVGNKADLLPR---------------------------------------------------SVKYPKLLRWMRRMA 128 (369)
T ss_dssp CEEEEEECGGGSCT---------------------------------------------------TCCHHHHHHHHHHHH
T ss_pred CEEEEEEChhcCCC---------------------------------------------------ccCHHHHHHHHHHHH
Confidence 77788888887531 1222233 3345
Q ss_pred HhcCC---eEEEEecCCCCChHHHHHHHHHHH
Q psy17467 221 KRHDM---YYLETSAKASDNVEKLFMQIAAEL 249 (730)
Q Consensus 221 k~lg~---~fvEtSAktG~GVeeLFe~Li~~l 249 (730)
+..|. .++++||++|.|++++++.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 66776 789999999999999999886543
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.82 E-value=8.5e-06 Score=88.36 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=49.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC------CCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh-------H
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG------VFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT-------Q 74 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~------~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~-------~ 74 (730)
.+|+++|.+|||||||+|++++. .......|.++ .....+.+++. +.++||||......+. .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999975 22233334433 33344444432 7899999964322111 1
Q ss_pred hhh---ccccEEEEEeecC
Q psy17467 75 SYY---RSAHALILVYDIS 90 (730)
Q Consensus 75 ~~~---r~ADaIILVyDvt 90 (730)
..+ +..|++++++|..
T Consensus 238 ~~~~~~~~i~~~~~~l~~~ 256 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEG 256 (369)
T ss_dssp HHHSCSSCCCCEEEEECTT
T ss_pred HHHhcccccCceEEEEcCC
Confidence 122 5678888888763
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.79 E-value=1e-05 Score=91.52 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl 28 (730)
...|+|+|.+||||||+++++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.70 E-value=2e-05 Score=85.46 Aligned_cols=79 Identities=15% Similarity=0.279 Sum_probs=46.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchhhhhhh----H----
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVF-----PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERFRSIT----Q---- 74 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f-----~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~~~sl~----~---- 74 (730)
.+|+++|.+|||||||+|++++... .....+..|.+.....+.+++. +.++||||......+. .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 4799999999999999999987521 1111122222333344444432 7899999974322111 1
Q ss_pred hh--hccccEEEEEeec
Q psy17467 75 SY--YRSAHALILVYDI 89 (730)
Q Consensus 75 ~~--~r~ADaIILVyDv 89 (730)
.+ ....+.+++++|.
T Consensus 238 ~~~~~~~i~~~~~~l~~ 254 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNE 254 (368)
T ss_dssp HHSCSSCCCCEEEEECT
T ss_pred HhccccccCceEEEEcC
Confidence 11 2456777777765
No 220
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.64 E-value=1.7e-05 Score=82.18 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~ 68 (730)
++++++|.+|||||||+|++.+...... .++.|.+.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5899999999999999999998765322 23334333223333332 479999999753
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.63 E-value=3.5e-05 Score=80.57 Aligned_cols=57 Identities=23% Similarity=0.397 Sum_probs=35.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCch
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f-~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e 67 (730)
..++|+++|.||||||||+|++++... .....|.++ .....+..+. .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT--TSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCee--eeeEEEEeCC---CEEEEECcCcC
Confidence 458999999999999999999998763 233333332 2222333332 48899999974
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.61 E-value=0.00027 Score=73.93 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=65.6
Q ss_pred EEeCCCch-hhhhhhHhhhccccEEEEEeecCCCCchhh--hHHHHHHHHHHhcccceEEEEeccCchhhHHHHHhhhcc
Q psy17467 60 IWDTAGQE-RFRSITQSYYRSAHALILVYDISCQPTFDC--LTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMASAAGL 136 (730)
Q Consensus 60 LwDTpG~e-~~~sl~~~~~r~ADaIILVyDvtd~eSfe~--L~~wleeI~~~~~~~~piVLVg~k~dl~~~~~i~~~~g~ 136 (730)
+-+.||+. .........+..+|+++.|+|+.++.+..+ +.+|+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------------------------------- 48 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------------------------------- 48 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----------------------------------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----------------------------------
Confidence 44567764 333445567899999999999999988764 22221
Q ss_pred cccCCCCCceEEeccCCCcchhhHHHHHHHHhhhhhcccccccchhhhhhhcccCCcCCccccccccccccCCCCChHHH
Q psy17467 137 LCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG 216 (730)
Q Consensus 137 ~~~~~~~~PVVLVGNK~DL~~~e~~~~~l~~~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~ivVgNK~DL~~R~Vs~ee~ 216 (730)
.+.|+++|.||+|+.+.+. .+..
T Consensus 49 -----~~kp~ilVlNK~DL~~~~~----------------------------------------------------~~~~ 71 (282)
T 1puj_A 49 -----KNKPRIMLLNKADKADAAV----------------------------------------------------TQQW 71 (282)
T ss_dssp -----SSSCEEEEEECGGGSCHHH----------------------------------------------------HHHH
T ss_pred -----CCCCEEEEEECcccCCHHH----------------------------------------------------HHHH
Confidence 2456777778888753210 1122
Q ss_pred HHHHHhcCCeEEEEecCCCCChHHHHHHHHHHHHH
Q psy17467 217 EDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251 (730)
Q Consensus 217 ~~lak~lg~~fvEtSAktG~GVeeLFe~Li~~l~e 251 (730)
.++.+..|++++++||++|.|++++++.+.+.+..
T Consensus 72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 72 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 33344567899999999999999999988777644
No 223
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.47 E-value=0.0005 Score=76.24 Aligned_cols=57 Identities=28% Similarity=0.479 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC----CCcceeeEEEEEEEe--CCeEEEEEEEeCCCc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQ----GATIGVDFMIKTVEI--NNERIKLQIWDTAGQ 66 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~f~~~~----~pTig~d~~~~~i~v--dg~~v~LqLwDTpG~ 66 (730)
++++|+|++|+|||||++.+.+..+.... .+... .....+.+ .+-...+.++|++|.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~--~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQ--LQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCE--EEEEEEEEEC--CEEEEEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccce--EeeEEEEeecCccccccchhhhhhh
Confidence 67999999999999999999986542211 12221 21222222 222346889999874
No 224
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.36 E-value=0.00051 Score=75.88 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
..++|+|++|||||||+|.+.+-
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999999984
No 225
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.35 E-value=0.00044 Score=71.78 Aligned_cols=24 Identities=33% Similarity=0.701 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++++|++|+|||||++.+++.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999999874
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.23 E-value=0.00019 Score=82.68 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=38.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-----CCcceeeEEEEEEEe-CCeEEEEEEEeCCCchh
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-----GATIGVDFMIKTVEI-NNERIKLQIWDTAGQER 68 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~-----~pTig~d~~~~~i~v-dg~~v~LqLwDTpG~e~ 68 (730)
..++|+|+|.||||||||+|++++....... ..|.|. ......+ ......+.|+||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi--~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGI--WMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSE--EEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEE--EEeecccccCCCceEEEecCCCcCc
Confidence 4578999999999999999999987632111 112221 1111111 12235689999999754
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.78 E-value=0.0011 Score=73.91 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl 28 (730)
.-|+++|.+||||||++..+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 568999999999999998886
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.74 E-value=0.0011 Score=73.47 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|+|.+||||||+++.+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 229
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.74 E-value=8.9e-05 Score=82.54 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeEEEEEEEeCCCchh--hhhhh--------Hhh
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER--FRSIT--------QSY 76 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~v~LqLwDTpG~e~--~~sl~--------~~~ 76 (730)
.++|+++|.+|+||||+.++|...-... ..++.+...........+......+||..|.+. ....+ ..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999987532111 112221110000001112223356899998732 23332 456
Q ss_pred hccccEEEEEeecCCCCchhhhHHHHHHHHHH
Q psy17467 77 YRSAHALILVYDISCQPTFDCLTDWLREIEEY 108 (730)
Q Consensus 77 ~r~ADaIILVyDvtd~eSfe~L~~wleeI~~~ 108 (730)
+..+++.++|+|.++. +++....|++.+...
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 6678899999999998 566767787776553
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.46 E-value=0.0049 Score=63.65 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=21.2
Q ss_pred hhHhhhccccEEEEEeecCCCCchhh
Q psy17467 72 ITQSYYRSAHALILVYDISCQPTFDC 97 (730)
Q Consensus 72 l~~~~~r~ADaIILVyDvtd~eSfe~ 97 (730)
.....+.++|++|.|+|+.++.+..+
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 44567889999999999999877654
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.96 E-value=0.0025 Score=70.82 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl 28 (730)
--|+++|.+||||||++..+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999886
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.59 E-value=0.015 Score=61.12 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl 28 (730)
--|+++|.+||||||++..+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999999886
No 233
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.41 E-value=0.037 Score=63.71 Aligned_cols=24 Identities=13% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVF 32 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f 32 (730)
.|+|+|++|+|||||++.+.+-..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred eEEEECCCCChHHHHHHHHhCCCC
Confidence 489999999999999999998643
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.03 E-value=0.017 Score=64.45 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..=|+|+|.+++|||+|+|++++
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhh
Confidence 34589999999999999999985
No 235
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.78 E-value=0.014 Score=61.89 Aligned_cols=26 Identities=8% Similarity=0.071 Sum_probs=19.8
Q ss_pred hhhHhhhccccEEEEEeecCCCCchh
Q psy17467 71 SITQSYYRSAHALILVYDISCQPTFD 96 (730)
Q Consensus 71 sl~~~~~r~ADaIILVyDvtd~eSfe 96 (730)
.+.+..+.++|.+++|+|+.+|..-.
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~ 103 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFST 103 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCH
Confidence 34445688999999999999765443
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.51 E-value=0.1 Score=56.45 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=20.2
Q ss_pred HhcCCeEEEEecCCCCChHHHHHH
Q psy17467 221 KRHDMYYLETSAKASDNVEKLFMQ 244 (730)
Q Consensus 221 k~lg~~fvEtSAktG~GVeeLFe~ 244 (730)
...|.+++.+||++|.|++++...
T Consensus 189 ~~~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 189 RNIGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp HTTTCCEEECBTTTTBTHHHHHHH
T ss_pred HhCCCcEEEEecCCCcCHHHHHHh
Confidence 456889999999999999988654
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.64 E-value=0.034 Score=53.87 Aligned_cols=22 Identities=41% Similarity=0.853 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.43 E-value=0.036 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++|+|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.15 E-value=0.042 Score=53.68 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.++|+|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999976
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.88 E-value=0.05 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3899999999999999999864
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.77 E-value=0.065 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-.|+++|++|+|||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999864
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.56 E-value=0.055 Score=51.94 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++|+|++|||||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.34 E-value=0.034 Score=58.93 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++++|++|||||||+|.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 58999999999999999998653
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.33 E-value=0.062 Score=52.49 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~ 31 (730)
++|+|++|+|||||++.+.+-.
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999998643
No 245
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.28 E-value=0.058 Score=51.30 Aligned_cols=19 Identities=37% Similarity=0.774 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy17467 10 VVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl 28 (730)
++++|++|+|||||++.+.
T Consensus 12 ~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEECCTTSCHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999999854
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.97 E-value=0.073 Score=53.33 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
-++|+|++|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 38999999999999999998753
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.94 E-value=0.072 Score=52.82 Aligned_cols=21 Identities=33% Similarity=0.732 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++|+|++|+|||||++.+.+-
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 899999999999999999874
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.79 E-value=0.08 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-|+|+|++|||||||++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3899999999999999999865
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.76 E-value=0.08 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-|+|+|++|||||||++++...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999854
No 250
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.70 E-value=0.097 Score=48.85 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.|+++|.+|+||||+.+.+.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998753
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.49 E-value=0.089 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-..|+|+|++|+|||||++.+.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999988753
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.46 E-value=0.097 Score=48.04 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy17467 9 KVVLVGNAGVGKTCLVRRF 27 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrL 27 (730)
-|+|.|.+||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 253
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.37 E-value=0.095 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.|+|+|++||||||+++.+.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998653
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.18 E-value=0.1 Score=48.31 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.15 E-value=0.11 Score=51.15 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
|+|+|++|||||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999854
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.07 E-value=0.11 Score=50.43 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-|+|+|++|||||||.+++...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999753
No 257
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.07 E-value=0.1 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVF 32 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f 32 (730)
.++++|++|||||||+|.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 489999999999999999997543
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.93 E-value=0.13 Score=49.85 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|+|++|+|||||++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999876
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.93 E-value=0.12 Score=48.18 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+|.|.|||||||+.+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999975
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.92 E-value=0.11 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-++++|++|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999975
No 261
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.73 E-value=0.13 Score=51.41 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl 28 (730)
-.|+|+|++|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999998
No 262
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.55 E-value=0.12 Score=52.33 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++|+|++|+|||||++.+.+-
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 799999999999999998764
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.55 E-value=0.13 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-|+|+|.+|+|||||++.+.+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 264
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.45 E-value=0.12 Score=51.68 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++++|++|+|||||++.+.+-
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998764
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.38 E-value=0.13 Score=48.94 Aligned_cols=23 Identities=48% Similarity=0.713 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999998754
No 266
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.32 E-value=0.14 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
-++++|++|||||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 47899999999999999998754
No 267
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.21 E-value=0.14 Score=50.26 Aligned_cols=20 Identities=40% Similarity=0.715 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
++++|++|+|||||++.++.
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 268
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.19 E-value=0.16 Score=47.83 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+|.|.+||||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.16 E-value=0.15 Score=49.56 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 270
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.13 E-value=0.15 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999875
No 271
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.12 E-value=0.14 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++|+|++|+|||||++.+.+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999864
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.98 E-value=0.16 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 273
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.95 E-value=0.16 Score=48.86 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.+|+|+|.+||||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999986
No 274
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.93 E-value=0.14 Score=50.23 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
+++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 489999999999999998875
No 275
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.92 E-value=0.17 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.629 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+|.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998864
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.79 E-value=0.16 Score=49.02 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+|+|.+|+||||+.+.|..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 277
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.79 E-value=0.15 Score=52.47 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=25.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
++|+|++|+|||||++.+.+-. .|+.| .+.++|.
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~-----~p~~G------~i~~~g~ 68 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLE-----KPSEG------AIIVNGQ 68 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred EEEECCCCCCHHHHHHHHhcCC-----CCCCc------EEEECCE
Confidence 7899999999999999998643 23334 5666774
No 278
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.77 E-value=0.16 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
-.|+++|.+|+||||+.+.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 279
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.67 E-value=0.15 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999764
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.59 E-value=0.17 Score=47.37 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-|++.|.+||||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.57 E-value=0.15 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999864
No 282
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.56 E-value=0.16 Score=53.09 Aligned_cols=22 Identities=41% Similarity=0.782 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
-++++|++|||||||+|.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 47999999999999999998 43
No 283
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.55 E-value=0.16 Score=50.81 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++|+|++|+|||||++.+.+-
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.46 E-value=0.19 Score=48.58 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+++|.+||||||+.+.+..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 285
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.46 E-value=0.17 Score=51.14 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 286
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.40 E-value=0.14 Score=48.39 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||+|++.+.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 287
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.38 E-value=0.18 Score=49.65 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
...|+|.|.+||||||+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 288
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.33 E-value=0.17 Score=52.68 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=26.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
++|+|++|+|||||++.+.+-. .|+. ..+.++|.
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~-----~p~~------G~I~~~G~ 70 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGIL-----KPSS------GRILFDNK 70 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS-----CCSE------EEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHHcCC-----CCCC------eEEEECCE
Confidence 7999999999999999998643 2333 36677774
No 289
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.32 E-value=0.17 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 290
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.27 E-value=0.13 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH-cC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFT-QG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl-~~ 30 (730)
-++|+|++|||||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 38999999999999999998 54
No 291
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.26 E-value=0.18 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 292
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.25 E-value=0.21 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 293
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.24 E-value=0.19 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
No 294
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.22 E-value=0.17 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999864
No 295
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.17 E-value=0.18 Score=52.08 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~ 31 (730)
++++|++|+|||||++.+.+-.
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999998743
No 296
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.14 E-value=0.2 Score=48.81 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|+|.+|+||||+.+.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 297
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.13 E-value=0.38 Score=52.03 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=27.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER 55 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~ 55 (730)
++++|++|||||||++.+.+-.. |+. ..+.++|..
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~-----p~~------G~I~i~G~~ 67 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQ-----PDS------GEISLSGKT 67 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSC-----CSE------EEEEETTEE
T ss_pred EEEECCCCchHHHHHHHHhcCCC-----CCC------cEEEECCEE
Confidence 78999999999999999987542 333 367778854
No 298
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.10 E-value=0.19 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.09 E-value=0.19 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999864
No 300
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.05 E-value=0.18 Score=52.04 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
.++|+|++|+|||||++.+.+-. .|+.| .+.++|.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~-----~p~~G------~I~~~g~ 86 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE-----DFDEG------EIIIDGI 86 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC-----CCCCc------EEEECCE
Confidence 37899999999999999988643 23333 5666773
No 301
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.00 E-value=0.21 Score=46.13 Aligned_cols=21 Identities=48% Similarity=0.809 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.+++.|++|+|||+|++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 302
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.99 E-value=0.18 Score=51.51 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3789999999999999999864
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.93 E-value=0.16 Score=50.50 Aligned_cols=22 Identities=36% Similarity=0.318 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 304
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.88 E-value=0.2 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
--|+|+|++|+|||||.+.+.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998865
No 305
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.85 E-value=0.19 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++|+|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 306
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.81 E-value=0.25 Score=47.62 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
+.|+++|.+|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 307
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.78 E-value=0.26 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+++|.+||||||+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.74 E-value=0.19 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999864
No 309
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.72 E-value=0.21 Score=48.33 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++|+|.+|+|||||+++++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4899999999999999999864
No 310
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.62 E-value=0.21 Score=51.21 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4799999999999999999864
No 311
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.53 E-value=0.21 Score=51.31 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.++|+|++|+|||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 489999999999999999876
No 312
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.47 E-value=0.24 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
-.|+++|.+||||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 313
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.46 E-value=0.22 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3799999999999999999864
No 314
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.35 E-value=0.27 Score=47.05 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 315
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.35 E-value=0.21 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999864
No 316
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.33 E-value=0.25 Score=48.19 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.32 E-value=0.23 Score=52.62 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999998763
No 318
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.30 E-value=0.19 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.-+++|+|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 319
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.28 E-value=0.21 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3789999999999999998764
No 320
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.85 E-value=0.37 Score=45.25 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCCCcceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 1 m~~~~~~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
|+.... ..|+|.|.+||||||+.+.|..
T Consensus 1 m~~~~~-~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKP-NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCC-EEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcC-cEEEEECCCCCCHHHHHHHHHH
Confidence 444332 4699999999999999999864
No 321
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.77 E-value=0.3 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 322
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.73 E-value=0.26 Score=47.58 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++|+|++|+|||||+..+...
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999998843
No 323
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.70 E-value=0.25 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-.-|+|+|++|+|||||++.+.+-
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhh
Confidence 346899999999999999988763
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.69 E-value=0.31 Score=45.79 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 325
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=87.61 E-value=0.65 Score=51.86 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=38.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH------------------cCCCCCC---CCCcceeeEEEEEE--Ee-CCeEEEEEEE
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFT------------------QGVFPPG---QGATIGVDFMIKTV--EI-NNERIKLQIW 61 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl------------------~~~f~~~---~~pTig~d~~~~~i--~v-dg~~v~LqLw 61 (730)
...=|+|+|..++|||+|+|.++ ...|... ...|.|+-.....+ .. ++..+.+-++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 33446799999999999999554 1234321 22344533222111 11 5667889999
Q ss_pred eCCCch
Q psy17467 62 DTAGQE 67 (730)
Q Consensus 62 DTpG~e 67 (730)
||.|..
T Consensus 146 DTEG~~ 151 (457)
T 4ido_A 146 DTQGTF 151 (457)
T ss_dssp EECCBT
T ss_pred eccCCC
Confidence 999864
No 326
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.58 E-value=0.27 Score=50.66 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999864
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.28 E-value=0.43 Score=46.09 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
...|+|+|.+|+||||+.+.+.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999863
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.26 E-value=0.32 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
...|+|.|.+||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.26 E-value=0.27 Score=46.20 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
+|+|+|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.24 E-value=0.31 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|+|.+||||||+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.09 E-value=0.35 Score=44.80 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 332
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.00 E-value=0.34 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 333
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.94 E-value=0.34 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+++|+|||||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 334
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=86.90 E-value=0.3 Score=48.90 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+|+|++|+|||||++.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 335
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.89 E-value=0.31 Score=48.71 Aligned_cols=21 Identities=52% Similarity=0.741 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++++|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=86.83 E-value=0.32 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 337
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.82 E-value=0.31 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4799999999999999998764
No 338
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.82 E-value=0.32 Score=45.83 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|++.|.+|+||||+.+.+..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 339
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.78 E-value=0.32 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-|++.|.+||||||+.++|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 340
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.77 E-value=0.18 Score=48.73 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|.+|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 341
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.66 E-value=0.35 Score=47.75 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+|.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 342
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.64 E-value=0.16 Score=48.97 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 343
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.56 E-value=0.39 Score=48.28 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..+|+|.|.+||||||+.++|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.56 E-value=0.37 Score=45.35 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 345
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.52 E-value=0.37 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
..|+++|.+||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998753
No 346
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.36 E-value=0.38 Score=45.61 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 347
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.33 E-value=0.35 Score=46.50 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999999864
No 348
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.27 E-value=0.33 Score=51.10 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-|+|+|++||||||+++.+.+-
T Consensus 104 vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998753
No 349
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.19 E-value=0.3 Score=45.09 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
-.+++.|++|+|||+|+..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988864
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.19 E-value=0.37 Score=45.77 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+++|.+|+||||+.+.+..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999998864
No 351
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.12 E-value=0.36 Score=52.16 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=26.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
++++|++|+|||||++.+.+-.. |+.| .+.++|.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~~-----p~~G------~I~i~g~ 77 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLER-----PTKG------DVWIGGK 77 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC-----CSEE------EEEETTE
T ss_pred EEEECCCCCcHHHHHHHHhCCCC-----CCcc------EEEECCE
Confidence 78999999999999999987532 3333 5667774
No 352
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.99 E-value=0.36 Score=52.13 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=26.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
++++|++|+|||||++.+.+-. .|+.| .+.++|.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~-----~p~~G------~I~i~g~ 65 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY-----KPTSG------EIYFDDV 65 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS-----CCSEE------EEEETTE
T ss_pred EEEEcCCCchHHHHHHHHHCCC-----CCCcc------EEEECCE
Confidence 7899999999999999998753 23333 5667774
No 353
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.99 E-value=0.36 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|+|.+||||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 354
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.98 E-value=0.36 Score=49.72 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999863
No 355
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.96 E-value=0.4 Score=45.14 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
.+|+|++|+|||||+..+..
T Consensus 29 ~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999854
No 356
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.90 E-value=0.29 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 357
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=85.89 E-value=0.38 Score=52.08 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=26.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
++++|++|+|||||++.+.+-.. |+.| .+.++|.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~-----p~~G------~I~i~g~ 65 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYK-----PTSG------KIYFDEK 65 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC-----CSEE------EEEETTE
T ss_pred EEEECCCCchHHHHHHHHhcCCC-----CCce------EEEECCE
Confidence 78999999999999999987532 3333 5667774
No 358
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=85.85 E-value=0.37 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++++|++||||||+++.+.+-
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 359
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.79 E-value=0.36 Score=49.49 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++|+|++|+|||||+..+.+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.73 E-value=0.39 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+|+|.+|+|||||++.+.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998875
No 361
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=85.71 E-value=0.42 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHH
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRF 27 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrL 27 (730)
...+||+++|.+++|||||++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 35689999999999999999998
No 362
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.71 E-value=0.25 Score=52.17 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
.++|+|++|+|||||++.+.+-. .|+.| .+.++|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~-----~p~~G------~I~i~G~ 116 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY-----DISSG------CIRIDGQ 116 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred EEEEECCCCchHHHHHHHHHcCC-----CCCCc------EEEECCE
Confidence 48999999999999999887542 24444 5666773
No 363
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.69 E-value=0.41 Score=44.42 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 364
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.65 E-value=0.42 Score=46.85 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|+|.+||||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.63 E-value=0.37 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|++.|++||||||+.+++..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 366
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.60 E-value=0.39 Score=52.10 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=27.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER 55 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~ 55 (730)
++++|++|+|||||++.+.+-.. |+.| .+.++|..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~-----p~~G------~I~i~g~~ 66 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEE-----PSRG------QIYIGDKL 66 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC-----CSEE------EEEETTEE
T ss_pred EEEECCCCcHHHHHHHHHHcCCC-----CCcc------EEEECCEE
Confidence 78999999999999999987532 3433 66778754
No 367
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.57 E-value=0.4 Score=52.06 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=26.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
++|+|++|+|||||++.+.+-. .|+.| .+.++|.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~-----~p~~G------~I~i~G~ 90 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE-----RPTEG------SVLVDGQ 90 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS-----CCSEE------EEEETTE
T ss_pred EEEEcCCCchHHHHHHHHhcCC-----CCCce------EEEECCE
Confidence 7899999999999999998743 24444 6667774
No 368
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.53 E-value=0.4 Score=46.12 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
++++|++|+|||||+..+..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999987
No 369
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.50 E-value=0.4 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
-.+++.|++|+|||+|+..+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 370
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=85.44 E-value=0.41 Score=52.25 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=26.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER 55 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~ 55 (730)
++++|++|+|||||++.+.+-.. |+.| .+.++|..
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~-----p~~G------~I~i~G~~ 66 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLET-----ITSG------DLFIGEKR 66 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC-----CSEE------EEEETTEE
T ss_pred EEEEcCCCchHHHHHHHHHcCCC-----CCCe------EEEECCEE
Confidence 78999999999999999987542 3433 56677743
No 371
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=85.38 E-value=0.41 Score=51.97 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=26.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
++++|++|+|||||++.+.+-.. |+.| .+.++|.
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~-----p~~G------~I~i~g~ 73 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEE-----PTEG------RIYFGDR 73 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC-----CSEE------EEEETTE
T ss_pred EEEECCCCChHHHHHHHHHcCCC-----CCce------EEEECCE
Confidence 78999999999999999987532 3434 5666774
No 372
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.37 E-value=0.41 Score=46.78 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
++|+|++|+|||||+..+...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999874
No 373
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.35 E-value=0.5 Score=45.28 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999874
No 374
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.34 E-value=0.39 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+|+|++|+|||||++.+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999876
No 375
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.26 E-value=0.4 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
--++++|++||||||+++.+.+.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998753
No 376
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.18 E-value=0.57 Score=45.62 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
+.|+|.|.+||||||+.+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999975
No 377
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.18 E-value=0.42 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 378
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.13 E-value=0.44 Score=45.38 Aligned_cols=21 Identities=33% Similarity=0.630 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-++|.|++|+|||+|+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 379
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.00 E-value=0.33 Score=45.48 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=15.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|.|.+||||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999863
No 380
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=84.87 E-value=0.44 Score=48.48 Aligned_cols=21 Identities=52% Similarity=0.741 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
|+++|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 381
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.77 E-value=0.43 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+|+|++|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 382
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=84.74 E-value=0.57 Score=44.56 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 367999999999999999999864
No 383
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.74 E-value=0.45 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 384
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.68 E-value=0.47 Score=44.73 Aligned_cols=21 Identities=48% Similarity=0.752 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.62 E-value=0.49 Score=44.62 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998865
No 386
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.59 E-value=0.35 Score=48.02 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.-|+|+|..|+||||+++.+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999998764
No 387
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.59 E-value=0.46 Score=48.18 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-|+|+|++|+|||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 379999999999999999864
No 388
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.52 E-value=0.48 Score=44.69 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
+++.|++|+|||+|+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998865
No 389
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.29 E-value=0.46 Score=50.01 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3899999999999999998763
No 390
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.25 E-value=0.55 Score=47.44 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl 28 (730)
..|+|+|++|+||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999997
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.16 E-value=0.54 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|+|.+|+||||+.+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 392
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.12 E-value=0.46 Score=51.27 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.++|+|++|+|||||++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999886
No 393
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.11 E-value=0.35 Score=52.07 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=26.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
++++|++|+|||||++.+.+-. .|+.| .+.++|.
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~-----~p~~G------~I~~~g~ 62 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFH-----VPDSG------RILLDGK 62 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS-----CCSEE------EEEETTE
T ss_pred EEEECCCCccHHHHHHHHHcCC-----CCCCc------EEEECCE
Confidence 7899999999999999998753 23433 5667774
No 394
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.05 E-value=0.5 Score=51.63 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 3799999999999999999863
No 395
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.90 E-value=0.45 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
No 396
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=83.54 E-value=0.6 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-+.|+|.+|+|||||+.++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.50 E-value=0.56 Score=46.87 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|++.|++|+|||+|++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.49 E-value=0.56 Score=46.93 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+|.|.+||||||+++++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 399
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.39 E-value=0.56 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 400
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=83.35 E-value=0.57 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
+++|+|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998764
No 401
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.12 E-value=0.64 Score=46.68 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
|+|+|+|||||+|...++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998874
No 402
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=83.05 E-value=0.57 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-|+++|++||||||+++.+.+-
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 4899999999999999998753
No 403
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.00 E-value=0.57 Score=49.85 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.+=|.|+|++|||||||++.+.+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998864
No 404
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.99 E-value=0.6 Score=44.68 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.81 E-value=0.7 Score=42.95 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 406
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.78 E-value=0.49 Score=49.73 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~ 31 (730)
++|+|..|+|||||++.+.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 6899999999999999999753
No 407
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.73 E-value=0.75 Score=47.98 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
....|+|+|.+|||||||++.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988764
No 408
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.72 E-value=0.34 Score=52.17 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=26.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCeE
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER 55 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~~ 55 (730)
++++|++|+|||||++.+.+-. .|+.| .+.++|..
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~-----~p~~G------~I~i~g~~ 68 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLD-----VPSTG------ELYFDDRL 68 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSS-----CCSEE------EEEETTEE
T ss_pred EEEECCCCCcHHHHHHHHhCCC-----CCCce------EEEECCEE
Confidence 7899999999999999998753 23434 66677754
No 409
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=82.55 E-value=0.49 Score=47.70 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
...|+++|.+|+||||+.+.+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 410
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=82.35 E-value=0.69 Score=45.19 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
++|+|++|+|||+|+.++..
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999888764
No 411
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=82.16 E-value=0.75 Score=42.96 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy17467 10 VVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl 28 (730)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999865
No 412
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=82.14 E-value=0.61 Score=51.98 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999874
No 413
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.95 E-value=0.71 Score=47.17 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+|.|.+|+||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 414
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=81.92 E-value=0.64 Score=52.52 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-|+|+|.+|||||||++.+.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 489999999999999999875
No 415
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.80 E-value=0.67 Score=48.11 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-++|.|++|+|||+|++.+.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 416
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.69 E-value=0.67 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 3899999999999999999864
No 417
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.47 E-value=0.7 Score=47.04 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
++|+|++|+|||||+..+..
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 418
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.14 E-value=2.4 Score=38.68 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999887643
No 419
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=80.76 E-value=0.79 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998753
No 420
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.71 E-value=0.77 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999753
No 421
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=80.69 E-value=1 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
...+++.|+||+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999986543
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=80.65 E-value=0.85 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++++|++|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998754
No 423
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.65 E-value=0.78 Score=46.66 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-.+++.|++|+|||+|++.+.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
No 424
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.51 E-value=0.83 Score=45.23 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|++.|++|+|||+|++.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 425
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=80.31 E-value=0.78 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|+|++|+||||+++.+++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3899999999999999999864
No 426
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=80.29 E-value=0.83 Score=46.82 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 3789999999999999999753
No 427
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=80.22 E-value=0.81 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999998764
No 428
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=79.90 E-value=0.88 Score=46.51 Aligned_cols=21 Identities=33% Similarity=0.503 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+++|.+|+||||+.+.+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 429
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=79.83 E-value=0.9 Score=51.72 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 430
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=79.72 E-value=0.88 Score=47.58 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 431
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=79.55 E-value=0.88 Score=46.65 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999753
No 432
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=79.44 E-value=1.1 Score=45.09 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.+.|+|.|.+|+||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998865
No 433
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=79.25 E-value=1.1 Score=46.20 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl 28 (730)
.+.|+|.|.+||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999987
No 434
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=79.11 E-value=1.2 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHH
Q psy17467 5 KFLFKVVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 5 ~~~iKIvVLG~pnVGKSSLLnrLl 28 (730)
...+|++++|...+||||++.++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 467999999999999999999874
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=79.08 E-value=0.91 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 3789999999999999998864
No 436
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=79.04 E-value=0.92 Score=46.97 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.+++.|++|+|||+|++.+.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998875
No 437
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=78.99 E-value=0.98 Score=45.71 Aligned_cols=21 Identities=38% Similarity=0.850 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.+++.|++|+|||++++.+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 438
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=78.90 E-value=0.93 Score=49.24 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999885
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=78.78 E-value=0.9 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~ 31 (730)
++++|++|+|||||++.+.+-.
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999998753
No 440
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=78.75 E-value=1.1 Score=45.54 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
+.|+|.|++|+||||+.+.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998863
No 441
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=78.63 E-value=1.1 Score=41.11 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
..|++.|++|+|||++.+.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998764
No 442
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.61 E-value=0.98 Score=47.20 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+++|.+||||||++..+..
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 443
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=78.05 E-value=0.83 Score=52.13 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN 53 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg 53 (730)
.++++|++|+|||||++.+.+-. .|+.| .+.++|
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~-----~p~~G------~i~~~g 405 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY-----DPASG------TISLDG 405 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS-----CCSEE------EEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCc-----CCCCc------EEEECC
Confidence 58999999999999999998642 24444 566676
No 444
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.90 E-value=0.91 Score=47.25 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 445
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.90 E-value=1.1 Score=46.33 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|++.|+||+|||+|.+.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4577889999999999998875
No 446
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=77.88 E-value=1.1 Score=48.04 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy17467 10 VVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl 28 (730)
.+|+|++|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999876
No 447
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.76 E-value=1.2 Score=44.04 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
....|+|+|.+|+||||+.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
No 448
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=77.65 E-value=1.1 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
-++++|++|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 37999999999999999998754
No 449
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.20 E-value=1.1 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.|++.|++|+|||+|++.+.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 4899999999999999998863
No 450
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=77.16 E-value=1.2 Score=42.33 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.|+|.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 451
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=77.14 E-value=0.95 Score=51.77 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
.++++|++|+|||||++.+.+-. .|+.| .+.++|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~-----~p~~G------~i~~~g~ 417 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY-----DVDRG------QILVDGI 417 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS-----CCSEE------EEEETTE
T ss_pred EEEEECCCCCcHHHHHHHHhcCc-----CCCCe------EEEECCE
Confidence 58999999999999999987643 24444 5666773
No 452
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=77.14 E-value=1.3 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998754
No 453
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=77.01 E-value=1.1 Score=48.83 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-|+|+|.+|+||||+.+++..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999875
No 454
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=76.97 E-value=1.2 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988753
No 455
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=76.91 E-value=1 Score=46.83 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.++|.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 456
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=76.47 E-value=1.2 Score=46.77 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-|+++|.+||||||++..+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 488999999999999998874
No 457
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=76.39 E-value=1.4 Score=43.13 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy17467 10 VVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl 28 (730)
.+|+|++|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5789999999999998764
No 458
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=76.36 E-value=1.3 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.-.+++.|++|+|||+|+..+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999998763
No 459
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.35 E-value=1.3 Score=45.90 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
+++.|++|+|||++++.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 460
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=75.88 E-value=1.2 Score=50.49 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999998754
No 461
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=75.87 E-value=1.3 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++|+|++|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 462
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=75.78 E-value=1.3 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
.++++|++|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999998753
No 463
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.76 E-value=1.3 Score=46.33 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999998764
No 464
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.49 E-value=1.3 Score=46.22 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.+++.|+||+|||+|++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 465
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=75.45 E-value=0.86 Score=51.86 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE 54 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~ 54 (730)
.++++|++|+|||||++.+.+-. .|+.| .+.++|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~-----~p~~G------~i~~~g~ 403 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY-----DVTSG------QILIDGH 403 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS-----CCSEE------EEEETTE
T ss_pred EEEEECCCCChHHHHHHHHhcCC-----CCCCc------EEEECCE
Confidence 58999999999999999877532 24444 5666773
No 466
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=75.02 E-value=1.4 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-++|.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 467
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=74.99 E-value=1.7 Score=42.41 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
+-+.|.+.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=74.80 E-value=1.4 Score=46.97 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~ 30 (730)
+.|+|++|+|||||+..+...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 469
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=74.49 E-value=1.1 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988754
No 470
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=74.39 E-value=1.4 Score=55.12 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN 53 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg 53 (730)
+|+|||+.|+|||||++-+.+- +.|+.| .+.+||
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl-----~~p~~G------~I~iDG 1140 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF-----YDTLGG------EIFIDG 1140 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS-----SCCSSS------EEEETT
T ss_pred EEEEECCCCChHHHHHHHHhcC-----ccCCCC------EEEECC
Confidence 6899999999999999998753 235555 566677
No 471
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.21 E-value=1.5 Score=49.16 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy17467 10 VVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl 28 (730)
++|+|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 472
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=73.85 E-value=1.5 Score=48.49 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.++++|+||||||++++.+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988764
No 473
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=73.52 E-value=1.7 Score=43.52 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~~ 31 (730)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998643
No 474
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=73.46 E-value=1.6 Score=45.12 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.|++.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 475
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=73.43 E-value=1.6 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
.|++.|+||+|||+|++.+.+.
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 5899999999999999999863
No 476
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=73.36 E-value=4.7 Score=41.15 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=44.9
Q ss_pred EEEEE--cCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCCe--EEEEEEE-eCCCc-hh----hhhh-hHhhh
Q psy17467 9 KVVLV--GNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE--RIKLQIW-DTAGQ-ER----FRSI-TQSYY 77 (730)
Q Consensus 9 KIvVL--G~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg~--~v~LqLw-DTpG~-e~----~~sl-~~~~~ 77 (730)
||+|+ |.+++||+.|++++.+..-.. +...+.++++.+ ...+.|| |.-.. .. |.+- .....
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~~~~~--------~~i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR 100 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHCSSTG--------ISIVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLR 100 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCCCCCS--------SCEEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHH
T ss_pred ceEEEecCcccccHHHHHHHHhcccccc--------cccccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHH
Confidence 56666 999999999999999763211 112334444333 3445554 54322 11 1110 01111
Q ss_pred ccccEEEEEeecCCCCchhhhH
Q psy17467 78 RSAHALILVYDISCQPTFDCLT 99 (730)
Q Consensus 78 r~ADaIILVyDvtd~eSfe~L~ 99 (730)
.--.+||+||+...++..+.+.
T Consensus 101 ~viggII~~f~~p~~~~~~~i~ 122 (233)
T 3uc9_A 101 NVMAGIILITDIRQTKPQELLH 122 (233)
T ss_dssp HTEEEEEEEECHHHHCGGGTHH
T ss_pred HhcceEEEEEeCCCcchHHHHH
Confidence 2337899999876655554443
No 477
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=73.35 E-value=1.8 Score=42.87 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+|-|.+||||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 478
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=73.26 E-value=1.9 Score=42.06 Aligned_cols=19 Identities=42% Similarity=0.782 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy17467 10 VVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl 28 (730)
++|.|+||+|||+|+.+++
T Consensus 33 ~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7899999999999998875
No 479
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=73.16 E-value=1.7 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQGV 31 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~~~ 31 (730)
++|+|++|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998754
No 480
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=73.13 E-value=2.2 Score=45.42 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-|+|+|++|||||+|..++...
T Consensus 12 ~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 4789999999999999999753
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=73.08 E-value=1.1 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 7 LFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 7 ~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
...|+|.|.+||||||+++.+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998864
No 482
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.06 E-value=0.87 Score=45.57 Aligned_cols=20 Identities=45% Similarity=0.698 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy17467 10 VVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl~ 29 (730)
+++.|++|+|||+|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999875
No 483
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=72.86 E-value=1.4 Score=44.42 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
.+++.|+||+|||+++..+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999887764
No 484
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=72.79 E-value=1.7 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-.|++.|+||+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999998753
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=72.59 E-value=1.9 Score=52.47 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVF 32 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f 32 (730)
.++|+|++|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999997654
No 486
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=72.37 E-value=1.9 Score=42.86 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+|.|.+|+||||+++.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3489999999999999999864
No 487
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=71.97 E-value=2 Score=43.02 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
..|++.|++|+|||+|++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 35899999999999999998764
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=71.76 E-value=2 Score=44.83 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
-.+++.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988764
No 489
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=71.56 E-value=2.3 Score=45.72 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+|+|++|||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3589999999999999999875
No 490
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=71.46 E-value=2 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
..|+|+|++|||||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 491
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=71.36 E-value=2 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQG 30 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~~ 30 (730)
-.+++.|++|+|||+++..+...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998753
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=71.33 E-value=2.4 Score=43.11 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHc
Q psy17467 6 FLFKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 6 ~~iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
+-.++.|+|.|||||||+..++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 347899999999999999998864
No 493
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=71.22 E-value=3.4 Score=51.79 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeEEEEEEEeCC
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINN 53 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~~~f~~~~~pTig~d~~~~~i~vdg 53 (730)
+++|+|+.|+|||||++-+++- +.|+.| .+.++|
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~-----~~~~~G------~I~idG 479 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY-----YDVLKG------KITIDG 479 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS-----SCCSEE------EEEETT
T ss_pred EEEEEecCCCcHHHHHHHhccc-----cccccC------cccCCC
Confidence 5899999999999999998753 234444 566676
No 494
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=71.17 E-value=1.6 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
.-|+|.|.+||||||+++++..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998864
No 495
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=71.07 E-value=2 Score=46.91 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy17467 10 VVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl 28 (730)
++|+|++|+|||||+..+.
T Consensus 181 ~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHH
Confidence 7899999999999999876
No 496
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=71.04 E-value=2.1 Score=45.09 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy17467 10 VVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl 28 (730)
.+|+|++|+|||||+..+.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999999864
No 497
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=70.94 E-value=1.9 Score=48.80 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy17467 9 KVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 9 KIvVLG~pnVGKSSLLnrLl~ 29 (730)
-++++|+||+|||+|++.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998865
No 498
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=70.56 E-value=2.3 Score=40.98 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=16.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy17467 10 VVLVGNAGVGKTCLVRRFT 28 (730)
Q Consensus 10 IvVLG~pnVGKSSLLnrLl 28 (730)
+++.|++|+||||++-++.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999985554
No 499
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=70.34 E-value=1.6 Score=44.65 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy17467 8 FKVVLVGNAGVGKTCLVRRFTQ 29 (730)
Q Consensus 8 iKIvVLG~pnVGKSSLLnrLl~ 29 (730)
-.|++.|++|+|||+|++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999865
No 500
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=70.32 E-value=1.9 Score=38.04 Aligned_cols=43 Identities=19% Similarity=0.061 Sum_probs=38.9
Q ss_pred cchhhhcccccCCCCCCCCCcc-ccchhhHHHHHH-hhcCCCCce
Q psy17467 267 MLTRIYNIKKACGDAKSKPSFL-SDKSLESCIKQI-VKKFPNIDI 309 (730)
Q Consensus 267 ~l~riy~~~~~~~~~~s~P~~l-~~~~~~~~~~~~-~k~~p~~~~ 309 (730)
.++|+|+++++..+.-..|..+ ++++++.++|.. |+++.+.|.
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fk 54 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFK 54 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEE
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhcc
Confidence 5789999999988788889999 999999999988 999999985
Done!