RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17467
(730 letters)
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 220 bits (563), Expect = 1e-67
Identities = 99/119 (83%), Positives = 111/119 (93%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
MEDY FLFK+VL+GNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVEIN E++KLQI
Sbjct: 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
WDTAGQERFRSITQSYYRSA+ALIL YDI+C+ +F CL +WLREIE+YAS KV+ VLVG
Sbjct: 80 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 138
Score = 76.9 bits (190), Expect = 3e-16
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NKID + RE+ + E+F++ DMYYLETSAK SDNVEKLF+ +A L+ + +
Sbjct: 139 NKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN 194
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 219 bits (560), Expect = 3e-67
Identities = 68/118 (57%), Positives = 92/118 (77%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
E Y FLFK+VLVG+A VGKTC+V+RF G F QG+TIGVDF +KT+EI +R+KLQIW
Sbjct: 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFR+ITQSYYRSA+ IL YDI+ + +F + W+ ++ +YA ++++L+G
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141
Score = 75.0 bits (185), Expect = 1e-15
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
NK D + RE+ + A+ +D + +ETSAK S NVE+ F+++A EL+ + L
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPL 199
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 214 bits (546), Expect = 2e-65
Identities = 58/119 (48%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
ED K++++G +GVGK+ L+ RFT F P ATIGVDF +KT+ ++ + KL IW
Sbjct: 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF-KVLRVLVG 119
DTAGQERFR++T SYYR A +ILVYD++ + TF L +WL E+E Y + ++ +LVG
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 128
Score = 82.7 bits (205), Expect = 3e-18
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMH 261
NKID+E+RE+ G FA++H M ++E SAK D V+ F ++ ++++ +
Sbjct: 129 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQ 188
Query: 262 DRGVG 266
+ G
Sbjct: 189 NSGPS 193
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 212 bits (543), Expect = 3e-65
Identities = 50/118 (42%), Positives = 83/118 (70%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+Y ++FK +++G+ GVGK+CL+ +FT+ F TIGV+F + +E++ ++IKLQIW
Sbjct: 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 69
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFR++T+SYYR A ++VYDI+ + T++ L+ WL + + + +L+G
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Score = 71.8 bits (177), Expect = 1e-14
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D E R++ E + FA+ + + +LE SAK +NVE F++ A ++ +
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 213 bits (544), Expect = 3e-65
Identities = 53/118 (44%), Positives = 86/118 (72%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
++Y +LFKVVL+G++GVGK+ L+ RFT+ F +TIGV+F ++++++ + IK QIW
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAG ER+R+IT +YYR A +LVYDI+ T++ + WL+E+ ++A ++ +LVG
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141
Score = 70.7 bits (174), Expect = 3e-14
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D R +PT+ FA+++ + ++ETSA S NVE F I E+
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 213 bits (545), Expect = 4e-65
Identities = 51/118 (43%), Positives = 78/118 (66%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+ +K+VL G+A VGK+ + R + F AT+GVDF +KT+ ++ ER LQ+W
Sbjct: 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFRSI +SY+R A ++L+YD++C+ +F + +W+ IE+ A V +LVG
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVG 140
Score = 69.2 bits (170), Expect = 1e-13
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 202 NKIDRED-------REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D D + +P GE A + + ETSAK N+ + + +A E+ ++
Sbjct: 141 NKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 212 bits (542), Expect = 7e-65
Identities = 57/118 (48%), Positives = 81/118 (68%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
E Y FLFK +++GNAG GK+CL+ +F + F TIGV+F K + + + +KLQIW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFRS+T+SYYR A +LVYDI+ + T++ LT+WL + AS ++ +L G
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Score = 74.5 bits (184), Expect = 2e-15
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D + RE+ FA+ +++ +LETSA +NVE+ F+Q A +++ K+
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 178
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 1128
Score = 232 bits (593), Expect = 8e-65
Identities = 100/164 (60%), Positives = 123/164 (75%)
Query: 385 AQIASRRKKDKNNKKILNEIIKPGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQV 444
+Q +++ K + KK E KPG ES RK R +T +DKLH AL+ELCF+INY N+ V
Sbjct: 638 SQAVNKKSKKQTGKKGEPEREKPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVV 697
Query: 445 WDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVENYV 504
W+ TF PREYL HLE RF++++VGM M+N T EIAKPSELL SVRAYM VLQ++ENYV
Sbjct: 698 WEHTFTPREYLTSHLEIRFTKSIVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYV 757
Query: 505 HIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVS 548
ID+TRVFNN LLQQTQ +DSHGE T+ +LY WY E LLR+VS
Sbjct: 758 QIDITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLRQVS 801
Score = 154 bits (389), Expect = 9e-39
Identities = 64/115 (55%), Positives = 86/115 (74%), Gaps = 5/115 (4%)
Query: 557 LLNFLRVY-----TVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLR 611
LL +R Y ++ENYV ID+TRVFNN LLQQTQ +DSHGE T+ +LY WY E LLR
Sbjct: 739 LLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLR 798
Query: 612 RVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNE 666
+VS G+I + +AFV+L E + FNAEE+SD++E+R+L++L+GPYGMK L+E
Sbjct: 799 QVSNGHIAYFPAMKAFVNLPTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSE 853
Score = 117 bits (295), Expect = 2e-27
Identities = 57/97 (58%), Positives = 80/97 (82%), Gaps = 4/97 (4%)
Query: 252 KLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFPNIDIK- 310
KLAEKLTI++DRGVGMLTR+YNIKKACGD K+KPS+L DK+LES +K IV+KFP ++ +
Sbjct: 12 KLAEKLTILNDRGVGMLTRLYNIKKACGDPKAKPSYLIDKNLESAVKFIVRKFPAVETRN 71
Query: 311 ---SVSGISQIRSDIVKSLSLYYYTFVDLLHFKDCVY 344
++ + + +S+I+K+L+LYY+TFVD++ FKD V
Sbjct: 72 NNQQLAQLQKEKSEILKNLALYYFTFVDVMEFKDHVC 108
Score = 92.1 bits (228), Expect = 3e-19
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 127 VNEMASAAGLLCTVDPALATALASDKTD--LDEDEHVLACLLMVFVAVCIPKLARNEACF 184
V E++SAAGL C +DPAL AL+S K++ E+E+ +ACLLMVFVAV +P LA N
Sbjct: 958 VYELSSAAGLPCEIDPALVVALSSQKSENISPEEEYKIACLLMVFVAVSLPTLASNVMSQ 1017
Query: 185 YLASLEGHSNNIHCMAR 201
Y ++EGH NNIHC+A+
Sbjct: 1018 YSPAIEGHCNNIHCLAK 1034
Score = 60.1 bits (145), Expect = 2e-09
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 672 FNAAHEMVHNQSDVNFPRLGQMIMDYEVPMKKLSEEFIPH 711
+N AHEM H SD +PRLGQMI+DYE P+KK+ EEF+PH
Sbjct: 160 YNYAHEMTHGASDREYPRLGQMIVDYENPLKKMMEEFVPH 199
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 212 bits (541), Expect = 8e-65
Identities = 61/120 (50%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQ-GATIGVDFMIKTVEINNERIKLQ 59
++ Y FKV+LVG++GVGKTCL+ RF G F G +T+G+DF K ++++ ++KLQ
Sbjct: 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63
Query: 60 IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
+WDTAGQERFRS+T +YYR AHAL+L+YD++ + +FD + WL EI EYA V +L+G
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123
Score = 75.7 bits (187), Expect = 4e-16
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK+D R + E GE AK + + ++ETSAK NV+ F IA EL + +
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 212 bits (542), Expect = 1e-64
Identities = 64/118 (54%), Positives = 93/118 (78%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+Y +LFK++L+GN+GVGK+CL+ RF+ + +TIGVDF IKTVE++ + +KLQIW
Sbjct: 3 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFR+IT SYYR +H +I+VYD++ Q +F+ + WL+EI+ YA+ VL++LVG
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Score = 75.0 bits (185), Expect = 1e-15
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D +D R + +V ++FA + M +LETSA S NVE F+ +A ++ E ++++
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 212 bits (541), Expect = 1e-64
Identities = 62/118 (52%), Positives = 83/118 (70%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
F +V+++G+ GVGKT L+ RFT F +T+GVDF IKTVE+ ++I+LQIW
Sbjct: 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIW 80
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERF SIT +YYRSA +ILVYDI+ + TFD L W++ I++YAS +LVG
Sbjct: 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Score = 68.8 bits (169), Expect = 1e-13
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 202 NKIDRED-REIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
NK+D E REI + GE FA++ M + E SAK + NV+++F+++ ++++K+
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 212 bits (541), Expect = 1e-64
Identities = 55/118 (46%), Positives = 80/118 (67%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
EDY F+FKVVL+G +GVGKT L+ RFT+ F TIGV+F +TV + +K QIW
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAG ER+R+IT +YYR A +LV+D++ T+ + WL+E+ ++A ++ +LVG
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVG 137
Score = 76.5 bits (189), Expect = 3e-16
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D RE+PTE FA+ + + +LETSA S NVE F + E+ K++++
Sbjct: 138 NKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 213 bits (543), Expect = 1e-64
Identities = 58/118 (49%), Positives = 80/118 (67%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
DY LFK+VL+G++GVGK+ L+ RFT+ F +TIGV+F +T+EI +RIK QIW
Sbjct: 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIW 67
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQER+R+IT +YYR A ++VYDIS +++ WL E+ E A V L+G
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIG 125
Score = 71.7 bits (176), Expect = 3e-14
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIM 260
NK D R +PTE + FA+ + + + ETSA S+NV+K F ++ + +K+++ +
Sbjct: 126 NKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL 185
Query: 261 HDRGVG 266
D
Sbjct: 186 GDSSAN 191
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 211 bits (539), Expect = 2e-64
Identities = 61/118 (51%), Positives = 94/118 (79%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+ Y +LFK++L+G++GVGKTC++ RF++ F +TIG+DF I+T+E++ +RIKLQIW
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFR+IT +YYR A ++LVYDI+ + +FD + +W+R IEE+AS V ++++G
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120
Score = 75.3 bits (186), Expect = 8e-16
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLT 258
NK D D R++ E GE A + + ++ETSAKA+ NVE F +A ++ K+ +
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWK 178
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 211 bits (540), Expect = 2e-64
Identities = 53/118 (44%), Positives = 77/118 (65%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
FLFK +++G+AG GK+CL+ +F + F TIGV+F + V + + +KLQIW
Sbjct: 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFRS+T+SYYR A +LVYDI+ + T++ L WL + AS ++ +L G
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137
Score = 74.6 bits (184), Expect = 2e-15
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D + RE+ FA+ +++ +LETSA +NVE+ F++ A ++ K+
Sbjct: 138 NKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSG 193
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 211 bits (539), Expect = 3e-64
Identities = 63/118 (53%), Positives = 91/118 (77%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+Y +LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQIW
Sbjct: 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFR+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Score = 74.6 bits (184), Expect = 1e-15
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIM 260
NK D + + ++FA + +LETSAK + NVE+ FM +AAE+ +++ T
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 188
Query: 261 HDRGVG 266
Sbjct: 189 GAEKSN 194
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 210 bits (537), Expect = 5e-64
Identities = 63/118 (53%), Positives = 91/118 (77%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+Y +LFK++L+G++GVGK+CL+ RF + +TIGVDF I+T+E++ + IKLQIW
Sbjct: 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFR+IT SYYR AH +I+VYD++ Q +F+ + WL+EI+ YAS V ++LVG
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 145
Score = 74.6 bits (184), Expect = 2e-15
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLA 254
NK D + + ++FA + +LETSAK + NVE+ FM +AAE+ +++
Sbjct: 146 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 199
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 210 bits (537), Expect = 6e-64
Identities = 51/118 (43%), Positives = 81/118 (68%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+ ++FK++++GN+ VGKT + R+ F P +T+G+DF +KT+ N++RIKLQIW
Sbjct: 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 62
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAG ER+R+IT +YYR A IL+YDI+ + +F+ + DW +I+ Y+ +LVG
Sbjct: 63 DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120
Score = 76.2 bits (188), Expect = 6e-16
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIM 260
NK D ED R + +E G A + E SAK + NV++ F ++ + EK++E L
Sbjct: 121 NKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTA 180
Query: 261 HDRGVG 266
G
Sbjct: 181 DPAVTG 186
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 209 bits (534), Expect = 6e-64
Identities = 45/117 (38%), Positives = 70/117 (59%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+ FKVVL+G VGKT LV R+ + F T+G F+ K + I +R+ L IWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQERF ++ YYR ++ ILVYDI+ + +F + +W++E+ + ++ +VG
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 118
Score = 73.3 bits (181), Expect = 3e-15
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NKID E R + + E +A+ + TSAK + +E+LF+ + ++E
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 210 bits (536), Expect = 6e-64
Identities = 57/118 (48%), Positives = 83/118 (70%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+LFK +++G+ GVGK+CL+ +FT F P TIGV+F + V I+ ++IKLQIW
Sbjct: 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 75
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQE FRSIT+SYYR A +LVYDI+ + TF+ LT WL + +++S ++ +L+G
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 133
Score = 75.3 bits (186), Expect = 1e-15
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 186 LASLEGHSN-NIHCM-ARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242
L HS+ N+ M NK D E R++ E GE FA+ H + ++ETSAK + NVE+ F
Sbjct: 116 LEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175
Query: 243 MQIAAELMEKLAEKL 257
+ A E+ K+ + L
Sbjct: 176 INTAKEIYRKIQQGL 190
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 209 bits (535), Expect = 8e-64
Identities = 53/118 (44%), Positives = 80/118 (67%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
++FK++L+GN+ VGKT + R+ F P +T+G+DF +KTV +++RIKLQIW
Sbjct: 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQER+R+IT +YYR A +L+YDI+ Q +F + DW +I+ Y+ +LVG
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG 134
Score = 74.6 bits (184), Expect = 1e-15
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
NK D ED R +P E G A + E SAK + NV+++F ++ + EK+ E
Sbjct: 135 NKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 208 bits (532), Expect = 1e-63
Identities = 41/116 (35%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
+ K+V+VGN VGK+ +++R+ +G+F TIGVDF+ + +++N+E ++L +WDT
Sbjct: 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
AGQE F +IT++YYR A A +LV+ + + +F+ ++ W ++ + LV
Sbjct: 62 AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQ 116
Score = 76.0 bits (188), Expect = 3e-16
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 186 LASLEGHSNNIHCM-ARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243
+ +I +NKID D I E E AKR + + TS K NV ++F
Sbjct: 100 REKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159
Query: 244 QIAAELMEK 252
+A + ++K
Sbjct: 160 YLAEKHLQK 168
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 209 bits (533), Expect = 2e-63
Identities = 51/118 (43%), Positives = 82/118 (69%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
++ ++FK++++GN+ VGKT + R+ F P +T+G+DF +KTV + +R+KLQIW
Sbjct: 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQER+R+IT +YYR A IL+YDI+ + +F+ + DW +I+ Y+ +LVG
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135
Score = 74.2 bits (183), Expect = 2e-15
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
NK D E+ R +PTE G+ A++ + E SAK + +V + F ++ + +K+++
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 208 bits (532), Expect = 2e-63
Identities = 54/116 (46%), Positives = 84/116 (72%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
Y +LFKVVL+G++GVGK+ L+ RFT+ F +TIGV+F ++++++ + IK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
AGQER+R IT +YYR A +LVYDI+ T++ + WL+E+ ++A ++ +LVG
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 117
Score = 74.2 bits (183), Expect = 2e-15
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D R +PT+ FA+++++ ++ETSA S NVE+ F I E+ +++K
Sbjct: 118 NKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 173
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 209 bits (534), Expect = 2e-63
Identities = 57/118 (48%), Positives = 86/118 (72%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+ Y + K++L+G++GVGK+CL+ RF + F P TIG+DF IKTV+IN +++KLQ+W
Sbjct: 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFR+IT +YYR A +ILVYD++ + TF + W + + E+A+ + +LVG
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG 132
Score = 79.3 bits (196), Expect = 6e-17
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D E R + + GE AK + ++E+SAK DNV ++F +A + EK+
Sbjct: 133 NKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 207 bits (530), Expect = 3e-63
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
M LFKV+L+G+ GVGK+ L+ R+ F TIGV+F+ K +E++ + +QI
Sbjct: 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK----VLRV 116
WDTAGQERFRS+ +YR + +L + + +F L++W +E YA K V
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120
Query: 117 LVG 119
++G
Sbjct: 121 ILG 123
Score = 72.2 bits (178), Expect = 8e-15
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 202 NKIDREDREIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIAAELMEK 252
NKID +R++ TE + + + + D Y ETSAK + NV F + ++
Sbjct: 124 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 208 bits (531), Expect = 3e-63
Identities = 56/120 (46%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+FK++++G++ VGKTCL RF G FP ATIGVDF + V+I+ ERIK+Q+W
Sbjct: 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 74
Query: 62 DTAGQERFR-SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS-FKVLRVLVG 119
DTAGQERFR S+ Q YYR+ HA++ VYD++ +F L W+ E +++ + R+LVG
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134
Score = 68.0 bits (167), Expect = 3e-13
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKA---SDNVEKLFMQIAAELME 251
NK D ++PT++ + FA H M ETSAK +D+VE +FM +A +L
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 207 bits (529), Expect = 5e-63
Identities = 44/118 (37%), Positives = 72/118 (61%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+ K+VL+G+ G GK+ LV RF + F Q +TIG F +T+ +N+ +K +IW
Sbjct: 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIW 66
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQER+ S+ YYR A A I+V+D++ Q +F+ W++E++ + ++ L G
Sbjct: 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG 124
Score = 74.1 bits (183), Expect = 2e-15
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D D R++ E + +A+ + ++++ETSAK + NV+++F +IA L +
Sbjct: 125 NKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 206 bits (527), Expect = 8e-63
Identities = 61/118 (51%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
DY LFK++++G++GVGK+ L+ RF F TIGVDF I+TVEIN E++KLQIW
Sbjct: 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERFR+IT +YYR H +I+VYD++ +F + WL EI + V R+LVG
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVG 120
Score = 78.4 bits (194), Expect = 5e-17
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 186 LASLEGHSNNIHCM-ARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFM 243
L + + +++ + NK D + + + TE FA + + ETSAK + NVE++F
Sbjct: 104 LHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163
Query: 244 QIAAELMEKLAEKL 257
I ++ + L
Sbjct: 164 CITELVLRAKKDNL 177
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 204 bits (522), Expect = 3e-62
Identities = 58/114 (50%), Positives = 84/114 (73%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+ K++L+G++GVGK+CL+ RF + F P TIG+DF IKTV+IN +++KLQIWDTAG
Sbjct: 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
QERFR+IT +YYR A +ILVYDI+ + TF + W + + E+A+ + +LVG
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG 115
Score = 78.0 bits (193), Expect = 7e-17
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAE 255
NK D E R + + GE AK + ++E+SAK DNV ++F +A + EK+
Sbjct: 116 NKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 202 bits (517), Expect = 2e-61
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KV L+G+ GVGK+ ++ RF + F P TIG FM KTV+ NE K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
RFR++ YYR + A I+VYDI+ + TF L +W+RE+ ++ ++ + G
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118
Score = 72.5 bits (179), Expect = 5e-15
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D D RE+ +D+A ++ETSAK + N+ +LF++I+ +
Sbjct: 119 NKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 202 bits (515), Expect = 4e-61
Identities = 46/119 (38%), Positives = 70/119 (58%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
+ FK+V +G VGKT L+ RF F ATIG+DF+ KT+ + + ++LQ+
Sbjct: 8 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 67
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
WDTAGQERFRS+ SY R + ++VYDI+ +F + W+ ++ V+ +LVG
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG 126
Score = 72.6 bits (179), Expect = 6e-15
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK D D R++ TE GE AK ++ ++ETSAKA NV++LF ++AA L
Sbjct: 127 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 202 bits (516), Expect = 8e-61
Identities = 46/119 (38%), Positives = 69/119 (57%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
+ FK+V +G VGKT L+ RF F ATIG+DF+ KT+ + + ++LQ+
Sbjct: 10 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 69
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
WDTAG ERFRS+ SY R + ++VYDI+ +F T W+ ++ V+ +LVG
Sbjct: 70 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG 128
Score = 73.9 bits (182), Expect = 4e-15
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D D R++ E GE AK ++ ++ETSAKA NV++LF ++AA L + +
Sbjct: 129 NKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ 184
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 202 bits (515), Expect = 1e-60
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
K L KV+++G++GVGKT L+ ++ F ATIG DF+ K V +++ + +QIW
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK----VLRVL 117
DTAGQERF+S+ ++YR A +LV+D++ TF L W E AS + V+
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 118 VG 119
+G
Sbjct: 123 LG 124
Score = 68.1 bits (167), Expect = 3e-13
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 187 ASLEGHSNNIHCMARNKIDREDREIPT-EVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245
AS N + NKID E+R++ T ++++ Y ETSAK + NVE+ F I
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
Query: 246 AAELMEKLAEK 256
A +++ E
Sbjct: 170 ARNALKQETEV 180
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 202 bits (515), Expect = 1e-60
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGV-DFMIKTVEINNERIKLQ 59
ME + +K+ L+G+ GVGKT + R G F AT+G + + ++ IK
Sbjct: 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64
Query: 60 IWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
+WDTAGQE+ + YY A IL +D++ + T L W++E + + V+
Sbjct: 65 VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCA 124
Score = 72.7 bits (179), Expect = 1e-14
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLT 258
NKID ++ ++I ++ + K + Y E SAK + N F+ +A +
Sbjct: 125 NKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 201 bits (513), Expect = 1e-60
Identities = 50/118 (42%), Positives = 68/118 (57%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
KV L+G+ GVGK+ +V RF Q F TIG FM KTV NE K IW
Sbjct: 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIW 77
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQERF S+ YYR + A ++VYDI+ Q +F L W++E++E+ ++ + G
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAG 135
Score = 73.0 bits (180), Expect = 5e-15
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D D RE+P + +++A+ +ETSAK + N+E+LF I+ ++ +
Sbjct: 136 NKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 198 bits (506), Expect = 5e-60
Identities = 49/112 (43%), Positives = 75/112 (66%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118
Score = 72.6 bits (179), Expect = 5e-15
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D + R + + + +A + + ++ETSAK S NV ++FM IA +L +
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 198 bits (505), Expect = 1e-59
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN-NERIKLQIW 61
+ K+V++G+ GKT L F Q F TIG+DF ++ + + N + LQIW
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY---ASFKVLRVLV 118
D GQ + Y A ++LVYDI+ +F+ L DW +++ + + L LV
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 119 G 119
G
Sbjct: 122 G 122
Score = 75.3 bits (186), Expect = 7e-16
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NKID E R I E F + + SAK D+V F ++AAE++ K
Sbjct: 123 NKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 199 bits (508), Expect = 1e-59
Identities = 46/129 (35%), Positives = 78/129 (60%), Gaps = 11/129 (8%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE------- 54
DY +L K++ +G++GVGKT + R+T F P T+G+DF K V N +
Sbjct: 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 79
Query: 55 ---RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF 111
++ LQ+WDTAGQERFRS+T +++R A +L++D++ Q +F + +W+ +++ A
Sbjct: 80 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 139
Query: 112 K-VLRVLVG 119
+ VL+G
Sbjct: 140 ENPDIVLIG 148
Score = 75.4 bits (186), Expect = 1e-15
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
NK D D RE+ + A ++ + Y ETSA NVEK + +M+++ + +
Sbjct: 149 NKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV 205
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 198 bits (506), Expect = 2e-59
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+ + FK+VLVG+ G GKT V+R G F AT+GV+ N IK +W
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
DTAGQE+F + YY A I+++D++ + T+ + +W R++ + VL G
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCG 126
Score = 69.7 bits (171), Expect = 1e-13
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 189 LEGHSNNIHCM-ARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247
L NI + NK+D +DR+ F ++ ++ Y + SAK++ N EK F+ +A
Sbjct: 113 LVRVCENIPIVLCGNKVDIKDRK-VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
Query: 248 ELMEKLAEKLTIM 260
+L+ + M
Sbjct: 172 KLIGDPNLEFVAM 184
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 197 bits (503), Expect = 3e-59
Identities = 45/129 (34%), Positives = 76/129 (58%), Gaps = 11/129 (8%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN--------- 52
DY +L K + +G++GVGKT ++ ++T G F T+G+DF K V
Sbjct: 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVG 65
Query: 53 -NERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-S 110
+RI LQ+WDTAG ERFRS+T +++R A +L++D++ + +F + +W+ +++ +A S
Sbjct: 66 RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125
Query: 111 FKVLRVLVG 119
VL G
Sbjct: 126 ENPDIVLCG 134
Score = 75.7 bits (187), Expect = 7e-16
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
NK D ED R + E + A+++ + Y ETSA N+ + +M+++ +
Sbjct: 135 NKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSV 191
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 195 bits (498), Expect = 1e-58
Identities = 43/123 (34%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER-IKLQI 60
K + KV+++G++GVGKT L+ R+ + ATIG DF+ K V ++ ++ +Q+
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK----VLRV 116
WDTAGQERF+S+ ++YR A +LVYD++ +F+ + W E +A+ V
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122
Query: 117 LVG 119
++G
Sbjct: 123 ILG 125
Score = 66.4 bits (163), Expect = 9e-13
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 202 NKIDRED--REIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIAAELMEK 252
NKID E+ + + + ++ AK D+ TSAK + NV+ F +IA +++
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 191 bits (487), Expect = 1e-56
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFT--QGVFPPGQGATIGVDFMIKTVEINNERIKLQ 59
KV +VG A VGK+ L+ FT F T GV+ ++ V I + + ++
Sbjct: 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 60 IW--DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY---ASFKVL 114
++ DTAG + ++ Y+ + ILV+D+S +F+ W ++ +
Sbjct: 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 115 RVLVG 119
VLV
Sbjct: 135 AVLVA 139
Score = 70.8 bits (174), Expect = 5e-14
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 202 NKIDRED--REIPTEVGEDFAKRHDMYYLETSAKA-SDNVEKLFMQIAAELMEKLAEKLT 258
NK D ++ ++ +D+A + + + + SA + + F+ IA +K+
Sbjct: 140 NKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVA 199
Query: 259 IMHDRG 264
D
Sbjct: 200 AFQDAC 205
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 178 bits (453), Expect = 2e-52
Identities = 48/115 (41%), Positives = 69/115 (60%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K+VL+G A VGK+ +V RF F + TIG F+ + V IN +K +IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTS 122
RF S+ YYR+A A ++VYD++ +F W++E+ E AS ++ LVG
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKI 118
Score = 59.0 bits (143), Expect = 2e-10
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 185 YLASLEGHSNN--IHCMARNKID----REDREIPTEVGEDFAKRHDMYYLETSAKASDNV 238
++ L ++ I + NKID +R++ E GE A+ + + ETSAK +NV
Sbjct: 97 WVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENV 156
Query: 239 EKLFMQIAAELMEK 252
+F+ I ++ K
Sbjct: 157 NDVFLGIGEKIPLK 170
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 171 bits (435), Expect = 1e-49
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPG--QGATIGVDFMIKTVEINNER---IKLQIWD 62
K+++VGN G GKT L+++ + Q AT+G+D ++I ++R + L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISC-QPTFDCLTDWLREIEEYASFKVLRVLVG 119
AG+E F S + + VYD+S Q D + WL I+ AS +LVG
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVG 119
Score = 49.3 bits (118), Expect = 7e-07
Identities = 9/77 (11%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 186 LASLEGHSNNIHCM-ARNKID----REDREIPTEVGEDFAKRHDM-----YYLETSAKAS 235
L +++ +++ + +D ++ + +++ ++ + Y+ + + S
Sbjct: 103 LFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEES 162
Query: 236 DNVEKLFMQIAAELMEK 252
D + KL I E +
Sbjct: 163 DALAKLRKTIINESLNF 179
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 166 bits (422), Expect = 1e-47
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 39/154 (25%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIK----- 57
+ K +K VL+G + VGK+ +V R T+ F TIG F V +N+ IK
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 58 --------------------------------LQIWDTAGQERFRSITQSYYRSAHALIL 85
IWDTAGQER+ SI YYR A I+
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 86 VYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
V+DIS T D W+ +++ ++ + +LV
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKISSN--YIIILVA 154
Score = 79.9 bits (197), Expect = 3e-17
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 186 LASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQI 245
+ L+ SN I + NKID+ ++ + +A+ +++ +++TSAK N++ +F +
Sbjct: 139 VNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYML 198
Query: 246 AAELMEKL 253
A E+ + +
Sbjct: 199 AEEIYKNI 206
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 160 bits (408), Expect = 9e-46
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+FKV+LVG +GVGK+ L F D + + ++ E + L ++
Sbjct: 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77
Query: 62 DTAGQERFRS-ITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
D Q + ++ A ++V+ ++ + +F + + L + + +LVG
Sbjct: 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137
Score = 65.7 bits (161), Expect = 2e-12
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D RE+ E G A ++ETSA N +LF ++ +
Sbjct: 138 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 159 bits (404), Expect = 1e-45
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
+FKV+LVG +GVGK+ L F D + + ++ E + L ++D Q
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 67 ERFRSITQS-YYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
Q ++ A ++V+ ++ + +F + + L + + +LVG
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116
Score = 65.6 bits (161), Expect = 1e-12
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D RE+ E G A ++ETSA N +LF ++ +
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 154 bits (392), Expect = 1e-43
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
K+V+VG GVGK+ L +F Q F TI D K ++ +L I
Sbjct: 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDIL 62
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
DTAGQE F ++ + Y R+ H +LV+ I+ + +F+ + +I VLVG
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121
Score = 64.1 bits (157), Expect = 5e-12
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
NK D E R++P F H + Y E SAK NV++ F Q+ + + ++L
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 151 bits (385), Expect = 2e-42
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
M + ++VV+ G GVGK+ LV RF +G F TI + + + + LQI
Sbjct: 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQI 60
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY--ASFKVLRVLV 118
DT G +F ++ + HA ILV+ ++ + + + L + I + + + +LV
Sbjct: 61 TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120
Query: 119 G 119
G
Sbjct: 121 G 121
Score = 65.7 bits (161), Expect = 2e-12
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMH 261
NK D RE+ T + A+ ++ETSAK + NV++LF ++ +
Sbjct: 122 NKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNI--D 179
Query: 262 DRGVGMLTRIYNIKKAC 278
+ G R +K C
Sbjct: 180 GKRSGKQKRTDRVKGKC 196
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 151 bits (383), Expect = 2e-42
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
++ L KV++VG+ GVGK+ L +F F T + K V ++ E +++ I
Sbjct: 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDIL 71
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
DTAGQE + +I +Y+RS + V+ I+ +F D+ +I V +LVG
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130
Score = 63.0 bits (154), Expect = 2e-11
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D ED R++ E ++ A++ ++ Y+ETSAK NV+K+F + E+ +
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 149 bits (378), Expect = 9e-42
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+ +K+V+VG+ GVGK+ L +F Q +F TI D +K EI+N+ L + D
Sbjct: 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLD 72
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVG 119
TAGQE F ++ + Y R+ ++VY ++ + +F+ + + + I +LV
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Score = 58.3 bits (142), Expect = 6e-10
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAK-ASDNVEKLFMQIAAELMEK 252
NK+D R++ + G++ A ++++ Y+ETSAK NV+K F + + ++
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 149 bits (378), Expect = 2e-41
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
++ L KV++VG+ GVGK+ L +F F T + K V ++ E +++ I
Sbjct: 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDIL 67
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
DTAGQE + +I +Y+RS + V+ I+ +F D+ +I V +LVG
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126
Score = 63.0 bits (154), Expect = 2e-11
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D ED R++ E ++ A++ ++ Y+ETSAK NV+K+F + E+ + E
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 182
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 147 bits (374), Expect = 2e-41
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV++VG+ GVGK+ L +F F T + K V ++ E +++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
E + +I +Y+RS + V+ I+ +F D+ +I V +LVG
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116
Score = 63.3 bits (155), Expect = 8e-12
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D ED R++ E ++ A + ++ Y+ETSAK NV+K+F + E+ +
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 147 bits (373), Expect = 3e-41
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG GVGK+ L + Q F TI + K V I+ E L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVG 119
+ ++ Y R+ + V+ I+ +F+ + + +I+ S V VLVG
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Score = 64.4 bits (158), Expect = 3e-12
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK D R + + +D A+ + + Y+ETSAK VE F + E+ +
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 146 bits (372), Expect = 4e-41
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+KVV++G+ GVGK+ L +F G F TI DF K +E+++ L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
+F S+ Y ++ ILVY + Q +F + +I KV +LVG
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115
Score = 59.4 bits (145), Expect = 1e-10
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK+D E RE+ + G A+ ++ETSAK+ V++LF +I ++
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 146 bits (371), Expect = 7e-41
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K+ ++G VGK+ L +F +G F TI F K + +N + LQ+ DTAGQ+
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQD 65
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
+ Q+Y + ILVY ++ +F+ + ++ + ++ +LVG
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118
Score = 61.0 bits (149), Expect = 5e-11
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D R I E G+ A+ + +LE+SAK + +F +I E +
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 146 bits (372), Expect = 1e-40
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KVV++G VGKT L +F +G F G T+ + K V + + L + DTAGQ+
Sbjct: 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQD 83
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
+ + S+ H +LVY ++ +F + +++ E + +V VLVG
Sbjct: 84 EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136
Score = 61.8 bits (151), Expect = 5e-11
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D RE+ G+ A+ ++E+SA+ + + +F ++ E+
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 145 bits (369), Expect = 1e-40
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
++V + G GVGK+ LV RF +G F T+ + + + + LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA--SFKVLRVLVG 119
+F ++ + HA ILVY I+ + + + L +I E + +LVG
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116
Score = 60.6 bits (148), Expect = 6e-11
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D RE+ + E A+ ++ETSAK + NV++LF ++ +
Sbjct: 117 NKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 143 bits (364), Expect = 1e-39
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG GVGK+ L + Q F TI + K V I+ E L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVG 119
+ ++ Y R+ + V+ I+ +F+ + + +I+ S V VLVG
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Score = 65.3 bits (160), Expect = 3e-12
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D R + T+ +D A+ + + ++ETSAK V+ F + E+ +
Sbjct: 117 NKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 143 bits (362), Expect = 2e-39
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG GVGK+ L + Q F TI + K V I+ E L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVG 119
+ ++ Y R+ + V+ I+ +F + + +I+ S V VLVG
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133
Score = 66.9 bits (164), Expect = 8e-13
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
NK D R + T+ + AK + + ++ETSAK VE F + E+ + +KL
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 142 bits (360), Expect = 2e-39
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V++G+ GVGK+ L +F QG+F TI + K VE++ ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
+F ++ Y ++ LVY I+ Q TF+ L D +I + V +LVG
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115
Score = 54.8 bits (133), Expect = 7e-09
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 202 NKIDRED-REIPTEVGEDFAKRH-DMYYLETSAKASDNVEKLFMQIAAE 248
NK D ED R + E G++ A++ + +LE+SAK+ NV ++F + +
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 141 bits (358), Expect = 3e-39
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
++KV+L+G GVGK+ L R F GV + G + +++ ++ E L ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
+ R + A ++VY ++ + +F+ ++ ++ + V +LVG
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 113
Score = 63.7 bits (156), Expect = 6e-12
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
NK D RE+ + G A D ++ETSA NV+ LF + ++ +
Sbjct: 114 NKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 141 bits (357), Expect = 5e-39
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L++VVL+G+ GVGKT L F +G D +T+ ++ E L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 67 ERFRSIT--QSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
E+ +S + A ++VY I+ + +F+ ++ ++ + + V +LVG
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118
Score = 63.3 bits (155), Expect = 8e-12
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D RE+ E G A D ++ETSA NV +LF + +L + +
Sbjct: 119 NKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 133 bits (336), Expect = 7e-36
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
K+ + G AGVGK+ LV RF F T+ + I++E + ++I DT
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDT 83
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
AGQE + R +LVYDI+ + +F+ + ++E V +LVG
Sbjct: 84 AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139
Score = 57.2 bits (139), Expect = 2e-09
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAK-ASDNVEKLFMQIAAELMEKLAEK 256
NK D + R++ TE GE A + E SA N+ ++F ++ E+ + +
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 131 bits (332), Expect = 2e-35
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+ ++G G GK+ L +F F + + ++++ + L++ DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLD 80
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA---SFKVLRVLVG 119
R+ + Y AHA ++VY + + +FD + +L + +A + +L+G
Sbjct: 81 TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLG 134
Score = 56.4 bits (137), Expect = 2e-09
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKAS-DNVEKLFMQIAAELMEK 252
NK+D R++ G A R + E SA ++V+ +F + E +
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 131 bits (332), Expect = 2e-35
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVF-PPGQGATIGVDFMIKTVEINNER---IKLQIWD 62
++VVL+G GVGK+ L F +G D +T+ ++ E I L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRVLVG 119
G+ + + + A ++VY I+ + +F+ ++ ++ + + +LVG
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121
Score = 56.9 bits (138), Expect = 2e-09
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D RE+ G A D ++ETSA NV++LF I ++ + K
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 130 bits (330), Expect = 3e-35
Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
++ ++G+A GK+ L+ RF G + T + K + ++ + + I + AG
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY---ASFKVLRVLVG 119
+ + A A+I V+ + + +F ++ ++ + LVG
Sbjct: 65 PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
Score = 46.5 bits (111), Expect = 5e-06
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 202 NKIDRED-REIPTEVGEDF-AKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
++I R + A Y ET A NV+++F ++A +++ ++
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 139 bits (352), Expect = 4e-35
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI--------NNER 55
+ KV L+G+ GKT L+++ F P + T G++ + K +
Sbjct: 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKE 97
Query: 56 IKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLR 115
WD GQE + Q + + +L+ D T WLR IE+Y +
Sbjct: 98 CLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSPV- 153
Query: 116 VLVG 119
++V
Sbjct: 154 IVVM 157
Score = 61.5 bits (149), Expect = 5e-10
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 184 FYLASLEGHSNNIHCM-ARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
++L +E + + NKID I + + + + S K D VE +
Sbjct: 139 YWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESI 198
Query: 242 FMQIAAELMEK 252
+ + ++
Sbjct: 199 AKSLKSAVLHP 209
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 131 bits (331), Expect = 6e-35
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGA-TIGVDFMIKTVEINNER---IK 57
E ++VVL+G GVGK+ L F +G D +T+ ++ E I
Sbjct: 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 91
Query: 58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI-EEYASFKVLRV 116
L +W+ G+ + + + A ++VY I+ + +F+ ++ ++ + + +
Sbjct: 92 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 117 LVG 119
LVG
Sbjct: 150 LVG 152
Score = 64.7 bits (158), Expect = 5e-12
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
NK D RE+ G A D ++ETSA NV++LF I ++ + K
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 129 bits (327), Expect = 8e-35
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KV +VGN GK+ LV R+ G + + + G F K + ++ + L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQ-EESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA-SFKVLRVLVG 119
+ + A++ V+ + + +F + ++ + + + +V VLVG
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG 126
Score = 52.2 bits (126), Expect = 7e-08
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 202 NKID---REDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAELMEK 252
+ R I + Y ET A NVE++F +A +++
Sbjct: 127 TQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 117 bits (294), Expect = 5e-30
Identities = 55/237 (23%), Positives = 89/237 (37%), Gaps = 73/237 (30%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KVVLVG+ G GKT L+ F G FP T+ +M+ +++ + + L IWDTAGQ+
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKI 126
+ + +Y A L+L +D++ +FD W E+ + KV ++VG
Sbjct: 94 DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVG------- 145
Query: 127 VNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYL 186
KTDL +D+ ++ L
Sbjct: 146 ------------------------CKTDLRKDKSLVNKLR-------------------- 161
Query: 187 ASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
+ G++ A+ + YLE SA+ DNV +F
Sbjct: 162 ------------------RNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 114 bits (288), Expect = 2e-29
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
+E+ K K+V+VG+ VGKTCL+ F++G P T+ +F ++ NE L +
Sbjct: 17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHL 75
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
WDTAGQE + + Y + ++L + ++ + +FD ++ W EI+ Y VLVG
Sbjct: 76 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVG 134
Score = 41.6 bits (98), Expect = 3e-04
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 202 NKID-REDRE--IPTEVGEDFAKRHD-MYYLETSAKASDNVEKLF 242
K+D R+D + + G+D ++ + Y+E S+ A + ++F
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 112 bits (282), Expect = 1e-28
Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 73/236 (30%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ + I +E++ ++++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQED 85
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVGGTSGLKIV 127
+ + Y +++ + I + + + + W E++ + V +LVG
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG-------- 136
Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
+K DL +DEH L
Sbjct: 137 -----------------------NKKDLRQDEHTRRELA--------------------- 152
Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
+ + +E G D A R YLE SAK + V ++F
Sbjct: 153 -----------------KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 110 bits (278), Expect = 6e-28
Identities = 50/251 (19%), Positives = 92/251 (36%), Gaps = 74/251 (29%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG+ GKTCL+ F++ FP T+ +++ +E++ ++++L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
+ + Y +++ + + + + W+ E++ + V +LV
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVA-------- 136
Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
+K DL DEHV L
Sbjct: 137 -----------------------NKKDLRSDEHVRTELA--------------------- 152
Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQ-I 245
+ + T+ G A R YLE SAK + V ++F
Sbjct: 153 -----------------RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195
Query: 246 AAELMEKLAEK 256
A L ++ +
Sbjct: 196 RAALQKRYGSQ 206
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 109 bits (274), Expect = 2e-27
Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 73/237 (30%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ D V ++ + + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKI 126
+ + Y ++ + + +F+ W E+ + +LVG
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG------- 141
Query: 127 VNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYL 186
K DL +D+ + L
Sbjct: 142 ------------------------TKLDLRDDKDTIEKLK-------------------- 157
Query: 187 ASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
+++ I G AK + YLE SA ++ +F
Sbjct: 158 ------------------EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 107 bits (269), Expect = 5e-27
Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 73/236 (30%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K V+VG+ VGKTCL+ +T FP T+ D V ++ + + L +WDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
+ + Y ++ + + +F+ W E+ + +LVG
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG-------- 116
Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
K DL +D+ + L
Sbjct: 117 -----------------------TKLDLRDDKDTIEKLK--------------------- 132
Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
+++ I G AK + YLE SA ++ +F
Sbjct: 133 -----------------EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 105 bits (265), Expect = 2e-26
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V VG+ VGKTCL+ +T FP T+ +F V +N + L +WDTAGQE
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTD-WLREIEEYASFKVLRVLVG 119
+ + YR A IL + + + +++ ++ W+ E++ YA V VLVG
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVG 119
Score = 38.9 bits (91), Expect = 0.002
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Query: 202 NKID-REDRE----------IPTEVGEDFAKRHD-MYYLETSAKASDNVEKLFMQIA 246
K+D R+D++ I T GE+ K Y+E S+K+ +NV+ +F
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 105 bits (265), Expect = 2e-26
Identities = 52/237 (21%), Positives = 88/237 (37%), Gaps = 74/237 (31%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG++ GKT L+ F + FP T+ ++ + EI+ +RI+L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
+ ++ Y + A+++ +DIS T D L W EI+E+ +LVG
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG-------- 118
Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
K+DL D L L
Sbjct: 119 -----------------------CKSDLRTDVSTLVELS--------------------- 134
Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKAS-DNVEKLF 242
+ + + G + AK+ Y+E SA S ++V +F
Sbjct: 135 -----------------NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 105 bits (265), Expect = 2e-26
Identities = 52/251 (20%), Positives = 86/251 (34%), Gaps = 74/251 (29%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K VLVG+ VGKT LV +T +P T D V ++ ++LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
F + Y + +L + + +F W+ EI + K +LVG
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVG-------- 131
Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
++DL ED VL L
Sbjct: 132 -----------------------TQSDLREDVKVLIELD--------------------- 147
Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQ-I 245
+++ +P E + A+ Y+E SA N++++F I
Sbjct: 148 -----------------KCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190
Query: 246 AAELMEKLAEK 256
A + ++
Sbjct: 191 VAGIQYSDTQQ 201
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 104 bits (260), Expect = 1e-25
Identities = 52/244 (21%), Positives = 89/244 (36%), Gaps = 74/244 (30%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+ K+V+VG++ GKT L+ F + FP T+ ++ + EI+ +RI+L +W
Sbjct: 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLW 81
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGG 120
DT+G + ++ Y + A+++ +DIS T D L W EI+E+ +LVG
Sbjct: 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG- 139
Query: 121 TSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARN 180
K+DL D L L
Sbjct: 140 ------------------------------CKSDLRTDVSTLVELS-------------- 155
Query: 181 EACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKAS-DNV 238
+ + + G + AK+ Y+E SA S ++V
Sbjct: 156 ------------------------NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSV 191
Query: 239 EKLF 242
+F
Sbjct: 192 RDIF 195
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 103 bits (259), Expect = 2e-25
Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 73/237 (30%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ + FP T+ D +V + ++ L ++DTAGQE
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVGGTSGLKI 126
+ + Y ++ + + +F +W+ E++EYA V +L+G
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIG------- 129
Query: 127 VNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYL 186
+ DL +D LA L
Sbjct: 130 ------------------------TQIDLRDDPKTLARLN-------------------- 145
Query: 187 ASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
D +++ I E G+ AK Y+E SA ++ +F
Sbjct: 146 ------------------DMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 103 bits (259), Expect = 2e-25
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K+VLVG+ GKT +++ + +P T+ ++ +E +R++L +WDT+G
Sbjct: 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSP 86
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVG 119
+ ++ Y + A++L +DIS T D L W EI +Y +L+G
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIG 138
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 97.8 bits (244), Expect = 2e-23
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V VG+ VGKTC++ +T FP T+ D V ++ + + L +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVG 119
+ + YR A +L + + + +++ L W+ E+ +A V VLVG
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVG 120
Score = 38.1 bits (89), Expect = 0.004
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 202 NKID-REDRE--------IPTEVGEDFAKR-HDMYYLETSAKASDNVEKLF 242
K+D R+D+ I + GE+ K+ Y+E S+K NV+ +F
Sbjct: 121 TKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 74.4 bits (183), Expect = 2e-15
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 11/115 (9%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGA----------TIGVDFMIKTVE-INNERI 56
FK+V G GKT ++ V +G T+ DF+ + + +
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 57 KLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF 111
+ ++ GQ + + + R ++ V D + E A +
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY 129
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 71.4 bits (176), Expect = 2e-14
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 8 FKVVLVG--NAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
++ LVG +G KT V G F T+G F ++ + N + +++WD G
Sbjct: 23 MELTLVGLQYSG--KTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGG 76
Query: 66 QERFRSITQSYYRSAHALILVYD 88
Q RFRS+ + Y R A++ + D
Sbjct: 77 QPRFRSMWERYCRGVSAIVYMVD 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.0 bits (186), Expect = 2e-14
Identities = 79/498 (15%), Positives = 141/498 (28%), Gaps = 156/498 (31%)
Query: 10 VVLVGNAGVGKTCLV----------RRFTQGVF--------------PPGQGATIGVDFM 45
V++ G G GKT + + +F Q +D
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 46 IKTVEINNERIKLQIWDTAGQERFRSI--TQSYYRSAHALIL--VYDISCQPTFD--C-- 97
+ ++ IKL+I Q R + ++ Y L+L V + F+ C
Sbjct: 213 WTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLSCKI 268
Query: 98 -LTDWLREIEEYASFKVLRVLVGGTSGLKIVNEMAS------AAGLL------------- 137
LT R + V L T+ ++ + LL
Sbjct: 269 LLTT--RFKQ------VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 138 --CTVDP---ALATALASDKTD-LDEDEHVLACLLMVFVAVCIPKLARNE--ACFY-LAS 188
T +P ++ D D +HV L + + L E F L+
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS- 379
Query: 189 LEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLET--SAKASDNVEKLFMQIA 246
+ IPT + L +V +
Sbjct: 380 ---------------VFPPSAHIPTIL------------LSLIWFDVIKSDVM----VVV 408
Query: 247 AELMEK-LAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFP 305
+L + L EK + I +I + K ++ +L + IV +
Sbjct: 409 NKLHKYSLVEK------QPKESTISIPSI-----YLELKVKLENEYALH---RSIVDHYN 454
Query: 306 NIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLHFKDC-----------VYLSGHF-DAQI 353
+ D Y+Y+ + H K+ V+L F + +I
Sbjct: 455 IPKTFDSDDLIPPYLD------QYFYSHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 354 ASRRKKDKNNKKILNEIIKPGAESYRKTREEAQIASRRKKDKNNKKILNEIIK--PGAES 411
+ ILN + + + Y+ I D ++++N I+ P E
Sbjct: 508 RHDSTAWNASGSILNTLQQ--LKFYKP-----YI---CDNDPKYERLVNAILDFLPKIEE 557
Query: 412 YRKTREELTTMDKLHMAL 429
+ T D L +AL
Sbjct: 558 -NLICSKYT--DLLRIAL 572
Score = 45.2 bits (106), Expect = 8e-05
Identities = 89/623 (14%), Positives = 197/623 (31%), Gaps = 158/623 (25%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKA---SDNVEKLFMQIAAE-----LMEKL 253
+ + ++I + + F D ++ K+ + ++ + M A L L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 254 AEKLTIMHDRGVGMLTRI-YN-----IKKACGDAKSKPSFLSDKSLESCIKQI---VKKF 304
K M + V + RI Y IK PS + + ++ + F
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ----PS-MMTRMYIEQRDRLYNDNQVF 126
Query: 305 PNIDIKSVSGISQIRSDIVKSLSLYYYTFVDLLH----F-KDCVYLS--------GHFDA 351
++ + ++R + L L V L+ K V L D
Sbjct: 127 AKYNVSRLQPYLKLRQAL---LELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 352 QI----ASRRKKDKNNKKILNEI---IKP-------GAESYRKTREEAQIASRRK-KDKN 396
+I + ++L ++ I P + + + Q RR K K
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 397 NKK---IL-----NEIIKPGAESYR-KTREELTTMDKLHMALTELCFAINYCTNIQVWDF 447
+ +L + A + K LTT K +T+ A T+I +
Sbjct: 243 YENCLLVLLNVQNAKAWN--AFNLSCKIL--LTTRFK---QVTDFLSAATT-THISLDHH 294
Query: 448 --TFAPREYLHQHLESRFSRALVGMVMFN-PDTSEIAKPSELL-----ASVRAYMNVLQT 499
T P E ++S + L + P E+ + S+R + T
Sbjct: 295 SMTLTPDE-----VKSLLLKYL-DCRPQDLP--REVLTTNPRRLSIIAESIRDGLA---T 343
Query: 500 VENYVHID---MTRVFNNALLQQT----QRM---------DSHGEKTVAALYIQWY---S 540
+N+ H++ +T + ++L ++M +H + L + W+
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIK 401
Query: 541 EVLLRRVSETQVKSL----NLLNFLRVYTV--ENYVHIDMTRVFNNALLQQTQRMDSHGE 594
++ V++ SL + + + ++ E V ++ + +++ +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 595 KTVAAL----YIQWY------------SEVLLRRVSAGNICFSLNQRAFVS--LTAEG-A 635
+ Y + L R V F L+ R F+ + + A
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV------F-LDFR-FLEQKIRHDSTA 513
Query: 636 IPFNAEEFSDVNELRALADLI---GPYGMKLLNELSLKAFNAAHEMVHNQSDVNFPRLGQ 692
+ + + +L+ I P +L+N + ++ ++ + L +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK----YTDLLR 569
Query: 693 MIMDYEVPMKKLSEEFIPHDSMR 715
+ + E +E I ++ +
Sbjct: 570 IALMAE-------DEAIFEEAHK 585
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 72.3 bits (177), Expect = 7e-14
Identities = 49/244 (20%), Positives = 77/244 (31%), Gaps = 73/244 (29%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQI 60
E K L K V+VG+ VGKTCL+ +T FP T+ D V ++ + + L +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGL 207
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFD-CLTDWLREIEEYASFKVLRVLVG 119
WDTAG E + + Y ++ + + +F W E+ + +LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266
Query: 120 GTSGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLAR 179
K DL +D+ + KL
Sbjct: 267 -------------------------------TKLDLRDDKDTIE------------KLKE 283
Query: 180 NEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHD-MYYLETSAKASDNV 238
+ I G AK + YLE SA +
Sbjct: 284 KKLTP--------------------------ITYPQGLAMAKEIGAVKYLECSALTQRGL 317
Query: 239 EKLF 242
+ +F
Sbjct: 318 KTVF 321
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 69.6 bits (170), Expect = 1e-13
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIG--VDFMIKTVEINNERIKLQIWDTAGQ 66
+++L+G GK+ + + P + + + ++ + QIWD GQ
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSF-VNFQIWDFPGQ 79
Query: 67 ERFRSIT---QSYYRSAHALILVYDIS--CQPTFDCLTDWLREIEEYASFKVLRVLV 118
F T + +R ALI V D L + + + V +
Sbjct: 80 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 67.7 bits (166), Expect = 4e-13
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 8 FKVVLVG--NAGVGKTCLVRRFTQGVFPPGQGA-TIGVDFMIKTVEINNERIKLQIWDTA 64
V+ +G N+G KT ++ + TIG F I+ + ++ + ++D +
Sbjct: 22 VHVLCLGLDNSG--KTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMS 75
Query: 65 GQERFRSITQSYYRSAHALILVYD 88
GQ R+R++ + YY+ A+I V D
Sbjct: 76 GQGRYRNLWEHYYKEGQAIIFVID 99
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 66.8 bits (164), Expect = 5e-13
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 17/87 (19%)
Query: 8 FKVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+++++G AG KT ++ R G P TIG F ++TV N +K Q+W
Sbjct: 8 MRILILGLDGAG--KTTILYRLQVGEVVTTIP-----TIG--FNVETVTYKN--LKFQVW 56
Query: 62 DTAGQERFRSITQSYYRSAHALILVYD 88
D G R + YY + A+I V D
Sbjct: 57 DLGGLTSIRPYWRCYYSNTDAVIYVVD 83
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 66.9 bits (164), Expect = 6e-13
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
+V+++G GKT ++ R G P T+G ++T++ N I ++WD
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVG--VNLETLQYKN--ISFEVWDL 73
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
GQ R + Y+ A+I V D
Sbjct: 74 GGQTGVRPYWRCYFSDTDAVIYVVD 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 66.1 bits (162), Expect = 1e-12
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
+++++G G GKT ++ R G P TIG F ++T+ N +KL +WD
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIG--FNVETLSYKN--LKLNVWDL 69
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
GQ R + YY A+I V D
Sbjct: 70 GGQTSIRPYWRCYYADTAAVIFVVD 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 65.7 bits (161), Expect = 1e-12
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 17/87 (19%)
Query: 8 FKVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
KV++VG NAG KT ++ +F+ P TIG ++ + INN + +W
Sbjct: 22 HKVIIVGLDNAG--KTTILYQFSMNEVVHTSP-----TIG--SNVEEIVINN--TRFLMW 70
Query: 62 DTAGQERFRSITQSYYRSAHALILVYD 88
D GQE RS +YY + +I+V D
Sbjct: 71 DIGGQESLRSSWNTYYTNTEFVIVVVD 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 65.7 bits (161), Expect = 1e-12
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 17/87 (19%)
Query: 8 FKVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+++L+G NAG KT L+++ + P T G F IK+V+ KL +W
Sbjct: 17 VRILLLGLDNAG--KTTLLKQLASEDISHITP-----TQG--FNIKSVQSQG--FKLNVW 65
Query: 62 DTAGQERFRSITQSYYRSAHALILVYD 88
D GQ + R +SY+ + LI V D
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVID 92
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 64.9 bits (159), Expect = 2e-12
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 17/86 (19%)
Query: 9 KVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
++++VG AG KT ++ + G P TIG F ++TVE N I +WD
Sbjct: 2 RILMVGLDAAG--KTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWD 50
Query: 63 TAGQERFRSITQSYYRSAHALILVYD 88
GQ++ R + + Y+++ LI V D
Sbjct: 51 VGGQDKIRPLWRHYFQNTQGLIFVVD 76
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 65.0 bits (159), Expect = 3e-12
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
+++++G GKT ++++F + P T+G F IKT+E KL IWD
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISP-----TLG--FNIKTLEHRG--FKLNIWDV 69
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
GQ+ RS ++Y+ S LI V D
Sbjct: 70 GGQKSLRSYWRNYFESTDGLIWVVD 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 65.0 bits (159), Expect = 3e-12
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
KV++VG GKT ++ +F+ P TIG ++ + INN + +WD
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIG--SNVEEIVINN--TRFLMWDI 67
Query: 64 AGQERFRSITQSYYRSAHALILVYD 88
GQE RS +YY + +I+V D
Sbjct: 68 GGQESLRSSWNTYYTNTEFVIVVVD 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 64.5 bits (158), Expect = 4e-12
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 9 KVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
K++ +G NAG KT L+ + P T + + I N IK +D
Sbjct: 25 KLLFLGLDNAG--KTTLLHMLKNDRLATLQP-----TWH--PTSEELAIGN--IKFTTFD 73
Query: 63 TAGQERFRSITQSYYRSAHALILVYD 88
G + R + + Y+ + ++ + D
Sbjct: 74 LGGHIQARRLWKDYFPEVNGIVFLVD 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 63.9 bits (156), Expect = 7e-12
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
++++VG GKT ++ + G P TIG F ++TVE N I +WD
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ICFTVWDV 80
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREI 105
GQ++ R + + Y+++ LI V D + + D L+++
Sbjct: 81 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM 122
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 62.7 bits (153), Expect = 2e-11
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 9 KVVLVG--NAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
K+V +G NAG KT L+ P T+ + + I + +D
Sbjct: 27 KLVFLGLDNAG--KTTLLHMLKDDRLGQHVP-----TLH--PTSEELTIAG--MTFTTFD 75
Query: 63 TAGQERFRSITQSYYRSAHALILVYD 88
G + R + ++Y + + ++ + D
Sbjct: 76 LGGHIQARRVWKNYLPAINGIVFLVD 101
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 62.7 bits (152), Expect = 9e-11
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIG--VDFMIKTVEINNERIKLQIWDTAGQ 66
K++L+G +G GK+ + + +G +D + + L +WD GQ
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQ 62
Query: 67 ERF-----RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEE 107
+ F ++ LI V+D+ + + + +++
Sbjct: 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 2e-10
Identities = 103/580 (17%), Positives = 175/580 (30%), Gaps = 209/580 (36%)
Query: 280 DAKS-KPSFLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSL------------ 326
DA S +P LS SLE + +V P S SQ++ K L
Sbjct: 2 DAYSTRPLTLSHGSLEHVL--LV---PT---ASFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 327 -----SLY--YYTFVD------------------LLHFKDCVYLSG---H-FDAQIASRR 357
L + +V L F++C YL G H A++
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC-YLEGNDIHALAAKLLQEN 112
Query: 358 KKDKNNKKILNEIIKPGAESYRKTREEAQIASRRKKDKNNKKILNEIIKPGA-------- 409
K E+IK +Y A+I ++R DK + L + G
Sbjct: 113 DTTLVKTK---ELIK----NYI----TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 410 -----ESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESR-- 462
+ Y EEL +L + Y + D E L + + +
Sbjct: 162 GQGNTDDYF---EELR----------DL-YQT-YHVLVG--DLIKFSAETLSELIRTTLD 204
Query: 463 ----FSRAL-VGMVMFNPDTSEIAKPS-ELLASVRAYMN---VLQTVENYVHIDMTRVFN 513
F++ L + + NP P + L S+ V+Q +Y + ++
Sbjct: 205 AEKVFTQGLNILEWLENPSN----TPDKDYLLSIPISCPLIGVIQLA-HY--VVTAKLLG 257
Query: 514 ---NALLQQTQRMDSHGEKTVAALYIQ----WYSEVLLRRVSETQVKSLNLLNF---LRV 563
L + H + V A+ I W S + K++ +L F +R
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF------VSVRKAITVL-FFIGVRC 310
Query: 564 YTVENYVHIDMTRVFNNALLQQTQRMDS--HGEKT------VAALYIQWYSEVLLRRVSA 615
Y + N L + DS + E ++ L E + V+
Sbjct: 311 Y-----------EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ----EQVQDYVNK 355
Query: 616 GN--------ICFSL-N-QRAFV------SLTA---------------EGAIPFNAEEFS 644
N + SL N + V SL + IPF+ +
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 645 DVNE-LRALA----DLIGPYGMKLLNELSLKAFN-AAHEM---VHNQSDVNFPRLGQMIM 695
N L + L+ P + +L + A ++ V++ D G
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD------GS--- 466
Query: 696 DYEVPMKKLSEEFIPHDSMR-----PMRWFIIKVMSTSHV 730
D ++ LS I + P++W +H+
Sbjct: 467 D----LRVLSGS-ISERIVDCIIRLPVKWETTTQFKATHI 501
Score = 55.8 bits (134), Expect = 4e-08
Identities = 82/533 (15%), Positives = 155/533 (29%), Gaps = 193/533 (36%)
Query: 149 ASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEG----------HSNNIHC 198
++ D++ A L+ F+ + ++ + L N+IH
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 199 MARNKIDREDREIPTEVGEDFAKRHDM---YY-----------------LETSAKASD-- 236
+A ++ E K ++ Y L + +
Sbjct: 104 LA--------AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 237 ---------NVEKLF--MQ--------IAAELMEKLAEKLTIM---HDRGVGMLTRIYNI 274
N + F ++ + +L++ AE L+ + + T+ NI
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 275 KKACGDAKSKPS--FLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYYYT 332
+ + + P +L + SC P I G+ Q+ +Y
Sbjct: 216 LEWLENPSNTPDKDYLLSIPI-SC--------PLI------GVIQL---------AHYVV 251
Query: 333 FVDLL-----HFKDCVY-LSGHFDAQIA--------SRRKKDKNNKKILNEIIKPGAESY 378
LL + + +GH + S + +K + + G Y
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 379 RKTREEAQIASRRKKDKNNKKILNEIIKPGAESY----------------RKTREELTTM 422
+ S + N NE G S KT L
Sbjct: 312 EAYPNTSLPPSILEDSLEN----NE----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 423 DKLHMALTELCFAINYCTNIQVWDFTFAPRE-Y-LHQHLE----------SR--FS-RAL 467
++ ++L +N N+ V + P+ Y L+ L SR FS R L
Sbjct: 364 KQVEISL------VNGAKNLVV---SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 468 VGMVMFNPDTSEIAKP--SELLASVRAYMN------------------VLQTVENYVHID 507
F P +A P S LL +N V T + D
Sbjct: 415 KFSNRFLP----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS---D 467
Query: 508 MTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNF 560
+ RV + ++ ++ + L ++W + TQ K+ ++L+F
Sbjct: 468 L-RVLSGSISERIVDC-------IIRLPVKW--------ETTTQFKATHILDF 504
Score = 50.4 bits (120), Expect = 2e-06
Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 26/128 (20%)
Query: 36 QGAT--IGVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP 93
A+ I D + V N + I++ ++DT R ++ S +V I P
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER-----IVDCIIRLP 487
Query: 94 TFDCLTDWLREIEEYASFKVLRVLV---GGTSGL-KIVNEMASAAGLLCTVDPALATALA 149
W E FK +L GG SGL + + G V +A L
Sbjct: 488 -----VKW----ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG----VRVIVAGTL- 533
Query: 150 SDKTDLDE 157
D D+
Sbjct: 534 -DINPDDD 540
Score = 46.2 bits (109), Expect = 4e-05
Identities = 44/295 (14%), Positives = 91/295 (30%), Gaps = 106/295 (35%)
Query: 36 QGA-TIGVDFMIKTVEINNERIKLQIWDTA---------------------------GQE 67
QG+ G M + ++ + +W+ A G E
Sbjct: 1624 QGSQEQG---MGMDLYKTSKAAQ-DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIE--------------------- 106
+ + I ++Y I+ + + F + +
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 107 EYASFKVLRVLVGGTSGLKIVNEMASAAGL-------LCTVDPALATALASDKTDLDEDE 159
E A+F+ L+ + GL + A+ AG L +LA + + E
Sbjct: 1740 EKAAFEDLK-----SKGL--IPADATFAGHSLGEYAALA----SLADVM-----SI-ES- 1781
Query: 160 HVLACLLMVF-----VAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTE 214
+ VF + V +P+ + + + ++ N +A +E +
Sbjct: 1782 ---LVEV-VFYRGMTMQVAVPRDELGRSNYGMIAI-----NPGRVAA-SFSQEALQ---Y 1828
Query: 215 VGEDFAKRHDMYYLETSAKASDNVEKLFMQ--IAAEL--MEKLAEKLTIMHDRGV 265
V E KR + +E + NVE Q A +L ++ + L + + +
Sbjct: 1829 VVERVGKRTG-WLVEI---VNYNVEN--QQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Score = 42.3 bits (99), Expect = 6e-04
Identities = 64/421 (15%), Positives = 120/421 (28%), Gaps = 152/421 (36%)
Query: 23 LVRRF----TQGVFPPGQGATIGV----------DFMIKTVEINNERIKLQIWDTAGQER 68
LV +F + V P G V ++ + +I+ KL + +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL-EGNDIHALAAKLLQENDTTLVK 118
Query: 69 FRSITQSYYRSAHALILVYDISCQP---------------TF-------DCLTDWLREI- 105
+ + ++Y + +D F D + LR++
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLY 177
Query: 106 EEYASFKVLRVLVGGTSGLKIVNEMASAAGLLCTV--DPALATALASDKTDLDE------ 157
+ Y + L+ +A L + A + + ++ E
Sbjct: 178 QTYHVL--VGDLI------------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 158 ---DEHVLA---------CL--LMVFVAVC-IPKLARNEACFYLASLEGHSNNI---HCM 199
D+ L + L +V + E YL GHS + +
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 200 ARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF------------MQIAA 247
A T+ E F + KA + LF +
Sbjct: 284 A-----------ETDSWESF--------FVSVRKA---ITVLFFIGVRCYEAYPNTSLPP 321
Query: 248 ELMEKLAEKLTIMHDRGVG--MLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQIVKKFP 305
++E E ++ GV ML + + L+ + ++ + + P
Sbjct: 322 SILEDSLE-----NNEGVPSPML--------SISN-------LTQEQVQDYVNKTNSHLP 361
Query: 306 NIDIKSVSGISQI---RSDIV----KSLSLYYYTFVDLLHFKDCVYLSGHFDAQI-ASRR 357
K V IS + ++ +V +SL Y L K SG ++I S R
Sbjct: 362 --AGKQVE-ISLVNGAKNLVVSGPPQSL----YGLNLTLR-KAKA-PSGLDQSRIPFSER 412
Query: 358 K 358
K
Sbjct: 413 K 413
Score = 41.6 bits (97), Expect = 0.001
Identities = 50/324 (15%), Positives = 90/324 (27%), Gaps = 123/324 (37%)
Query: 443 QVWDFTFAPREYLHQHLESRFSRALVGMVMFNPDTSEIAKPSELLASVRAYMNVLQTVEN 502
VW+ A H + + +++ +V+ NP I E +R EN
Sbjct: 1644 DVWNR--A-----DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR---------EN 1687
Query: 503 YVHIDMT-RVFNNALLQQTQRMDSHGEKTVAALYIQWYSEVLLRRVSETQVKSLNLLNFL 561
Y M + L+ + E + + Y + LL TQ
Sbjct: 1688 Y--SAMIFETIVDGKLKTEKIFKEINEHSTS--YTFRSEKGLLSATQFTQP--------- 1734
Query: 562 RVYTVENYVHIDMTRVFNNALLQQTQRMDS----H--GEKTVAALYIQWYSEVLLRRVSA 615
+ +E + L D+ H GE Y+
Sbjct: 1735 ALTLME----KAAFEDLKSKGLIPA---DATFAGHSLGE----------YA--------- 1768
Query: 616 GNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALA-------DLIG--PYGMKLLN- 665
A SL A + E +V R + D +G YGM +N
Sbjct: 1769 ----------ALASL-A-DVMSI--ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 666 -----ELSLKAFNAAHEMVHNQSD-----VNF--PRLGQ---------------MIMDY- 697
S +A E V ++ VN+ Q ++++
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE--NQQYVAAGDLRALDTVTNVLNFI 1872
Query: 698 ---EVPMKKLSEEFIPHDSMRPMR 718
++ + +L + S+ +
Sbjct: 1873 KLQKIDIIELQKSL----SLEEVE 1892
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 59.4 bits (144), Expect = 4e-10
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNER-IKLQIWDTAGQE 67
V+ VG GKT L R G + Q +I ++NN R L + D G E
Sbjct: 9 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65
Query: 68 RFR-SITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF 111
R + + SA A++ V D + + RE+++ A F
Sbjct: 66 SLRFQLLDRFKSSARAVVFVVDSA---------AFQREVKDVAEF 101
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 58.0 bits (140), Expect = 6e-09
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 5 KFLFKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQI 60
+++++G GKT ++ + G P T+G F ++TV N +K +
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIP-----TVG--FNVETVTYKN--VKFNV 370
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYD 88
WD GQ++ R + + YY LI V D
Sbjct: 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVD 398
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 56.0 bits (135), Expect = 1e-08
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQG----VFPPGQGATIGVDFMIKTVEINNERIKLQ 59
K ++++VG GKT ++ + G P TIG F ++TVE N I
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFT 212
Query: 60 IWDTAGQERFRSITQSYYRSAHALILVYD 88
+WD GQ++ R + + Y+++ LI V D
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 55.4 bits (133), Expect = 2e-08
Identities = 27/171 (15%), Positives = 45/171 (26%), Gaps = 65/171 (38%)
Query: 14 GNAGVGKTCLVRRFTQGV---FPPGQGATIG-VDFMIKTVEINN--------------ER 55
G G+GK+CL RF + F + + DF + V ++
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94
Query: 56 IKLQIW-------DTAGQERFRSITQSYYRSA---------------------------- 80
K+ I D Q + Q Y + A
Sbjct: 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154
Query: 81 ---------HALILVYDIS--CQPTFDCLTDWLREIEEYAS-FKVLRVLVG 119
+L D+S FD ++ + + K V+V
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVL 205
Score = 50.0 bits (119), Expect = 8e-07
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 202 NKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
K D R I +K ++ +ETSA+++ NV+ F + ++K
Sbjct: 206 TKCDEGVERYIRDAHTFALSK-KNLQVVETSARSNVNVDLAFSTLVQL-IDK 255
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 54.7 bits (131), Expect = 4e-08
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 10/113 (8%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
V+L+G GK+ + + P + + I L + + GQ +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNY 59
Query: 70 RS---ITQSYYRSAHALILVYDISCQPTFD--CLTDWLREIEEY---ASFKVL 114
++ ++S AL+ V D + L + + + +VL
Sbjct: 60 FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVL 112
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 51.3 bits (123), Expect = 2e-07
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 15/104 (14%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
+++ G GKT L+ T P T+ + + + + + D G +
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDG--SGVTLVDFPGHVKL 68
Query: 70 RSITQSYYRSAHALI--LVYDISCQPTFDCLTDWLREIEEYASF 111
R Y ++ + L++ + D D +++ A F
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMV------DSTVD-PKKLTTTAEF 105
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 49.3 bits (118), Expect = 8e-07
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
+++ G GKT L+ T P T+ + + + + + D G +
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDG--SGVTLVDFPGHVK 103
Query: 69 FRSITQSYYRSAHALI--LVYDISCQPTFDCLTDWLREIEEYASF 111
R Y ++ + L++ + D D +++ A F
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMV------DSTVD-PKKLTTTAEF 141
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.003
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 375 AESYRKTREE--AQIASRRKKDKNNKKILNEIIKPGAES----YRKTREEL 419
ES RK REE ++ + D +K + E + + ++ E++
Sbjct: 84 PESIRKWREEQRKRLQ---ELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Score = 36.3 bits (83), Expect = 0.016
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 349 FDAQIASRRKKDKNNKKILNEIIKPGAES----YRKTRE--EAQIASRRKKDK 395
++ + D +K + E + + ++ E E + R DK
Sbjct: 94 QRKRLQ---ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 37.4 bits (86), Expect = 0.014
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRF--TQGVFPPGQGATIGVDFMIKTVEI--NNERIKLQIW 61
F F ++ VG G+GK+ L+ T+ P GV T ++ +N R+KL I
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIV 100
Query: 62 DTAG 65
T G
Sbjct: 101 STVG 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 35.9 bits (82), Expect = 0.039
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 6 FLFKVVLVGNAGVGKTCLVR-------RFTQGVFPPGQGATIGVDFMIKTVEI--NNERI 56
F F +++VG +G+GK+ L+ + + + V TVEI ++
Sbjct: 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 57 KLQIWDTAGQERFRSITQSY 76
+L + DT G + +
Sbjct: 77 RLTVVDTPGYGDAINCRDCF 96
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 35.1 bits (80), Expect = 0.059
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 6 FLFKVVLVGNAGVGKTCLVR------RFTQGVFPPGQGATIGVDFMIKTVEI--NNERIK 57
F F +++VG +G+GK+ L+ ++ P V V I ++
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 66
Query: 58 LQIWDTAGQERFRSITQSY 76
L I DT G + +
Sbjct: 67 LTIVDTPGFGDAVDNSNCW 85
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 34.4 bits (78), Expect = 0.11
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 6 FLFKVVLVGNAGVGKTCLVRR-FTQGVFPPGQGAT-----IGVDFMIKTVEI--NNERIK 57
F F +++VG +G+GK+ L+ F ++ P V V I ++
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 89
Query: 58 LQIWDTAG 65
L I DT G
Sbjct: 90 LTIVDTPG 97
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 32.5 bits (73), Expect = 0.52
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI---------NNERI 56
F F +++VG +G+GK+ L+ P + + + +TV+I ++
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 57 KLQIWDTAGQERFRSITQSY 76
+L + DT G + +
Sbjct: 96 RLTVVDTPGYGDAINCRDCF 115
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 31.9 bits (72), Expect = 0.60
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 15/119 (12%)
Query: 9 KVVLVGNAGVGKTCLVRRFT-QGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG-- 65
++VLVG G GK+ + VF G A + + + + +L + DT G
Sbjct: 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAK-SITKKCEKRSSSWKETELVVVDTPGIF 89
Query: 66 ------QERFRSITQSYYRSA---HALILVYDISCQPTFDCLTDWLREIEEYASFKVLR 115
E + I + ++ HAL+LV + + +I + +
Sbjct: 90 DTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKA--TEKILKMFGERARS 146
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 31.0 bits (70), Expect = 1.3
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG---- 65
VV+ G+ VGK+ L++ T + E R QI DT G
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRY--QIIDTPGLLDR 227
Query: 66 --QERFRSITQSYYRSAH---ALILVYDISCQPTFDCLTDWLREIEEY 108
ER Q+ + +I ++D S F L + + EE
Sbjct: 228 PISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFP-LEEQIHLFEEV 274
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.2 bits (71), Expect = 1.3
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKLTIMH 261
NKID E E+ + R++ L SA + + I+ L E++ +
Sbjct: 148 NKIDVLG-EKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD--EEIPYLG 204
Query: 262 DR 263
D
Sbjct: 205 DL 206
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar
kinases, HSC70, superfamily; 1.90A {Escherichia coli}
SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Length = 513
Score = 31.1 bits (71), Expect = 1.5
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 236 DNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLES 295
+N ++ M A +L + + +G I + + K ++ + LE
Sbjct: 185 ENFQRARMAAAQKLETLTWQFRIQGWNVAMGASGTIKAAHEVLMEMGEKDGIITPERLEK 244
Query: 296 CIKQIVKKFPNIDIKSVSGISQIRSDIV 323
+K++++ N S+ G+S+ R +
Sbjct: 245 LVKEVLR-HRNFASLSLPGLSEERKTVF 271
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 30.7 bits (69), Expect = 1.6
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 22/122 (18%)
Query: 9 KVVLVGNAGVGKTCLV------RRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
++++G GVGK+ V R + F G ++ + L I D
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQS-----EGPRPVMVSRSRAG--FTLNIID 93
Query: 63 TAG-------QERFRSITQSY--YRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKV 113
T G + +I +S+ ++ L+ V + + + I + +
Sbjct: 94 TPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI 153
Query: 114 LR 115
Sbjct: 154 WN 155
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.8 bits (69), Expect = 1.6
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
+L+G VGK+ L+R F I +D E + + I + +
Sbjct: 34 TLLLGIRRVGKSSLLRAFLNERP------GILIDCRELYAERGHITREELIKEL---QST 84
Query: 70 RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
S Q + + + ++ +P L + RE+ + ++
Sbjct: 85 ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVA 133
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 30.5 bits (70), Expect = 2.1
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 542 VLLRRVSETQVKSLNLLNFLRVYTVENYVHIDM-TR 576
LL+ +TQ +L + + + ++ + +D TR
Sbjct: 239 CLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATR 274
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 30.6 bits (69), Expect = 2.6
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 285 PSFLSDKSL------------ESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYY 330
SF + SL ++ +++IV + + + + + D+ + + +
Sbjct: 22 SSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINF 79
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 29.7 bits (66), Expect = 3.5
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEIN 52
+ +G G GKT + + + + D K +N
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDV--KQAYVN 88
>3nh4_A Aspartoacylase-2; mercapturates, hydrolase; 2.00A {Mus musculus}
PDB: 3nh5_A 3nfz_A 3nh8_A*
Length = 327
Score = 29.8 bits (66), Expect = 3.6
Identities = 14/69 (20%), Positives = 19/69 (27%), Gaps = 4/69 (5%)
Query: 543 LLRRVSETQVKSLNLLNFLR-VYTVEN---YVHIDMTRVFNNALLQQTQRMDSHGEKTVA 598
L+ E Q S + + L Y+ D+ R L T D E A
Sbjct: 43 WLQNPGELQRPSFSAMPVLANPAATAACCRYLDRDLNRSCTLTFLGSTATPDDPYEVKRA 102
Query: 599 ALYIQWYSE 607
Q
Sbjct: 103 RELNQLLGP 111
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.9 bits (64), Expect = 5.3
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 12/119 (10%)
Query: 8 FKVVLVGNAGVGKTCLVRR-FTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG- 65
+++LVG G GK+ Q F GAT ++ +++ DT
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC-HVEVVDTPDI 80
Query: 66 --------QERFRSITQSYYRSAHAL-ILVYDISCQPTFDCLTDWLREIEEYASFKVLR 115
Y SA L+ +R++ + VL+
Sbjct: 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLK 139
>2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2,
ACY2_RAT, STRU genomics, PSI, protein structure
initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP:
c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A
Length = 312
Score = 29.0 bits (64), Expect = 5.4
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 543 LLRRVSETQVKSLNLLNFLR----VYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVA 598
L+ +E L + F+ V Y+ D+ RVF+ L + D E A
Sbjct: 33 WLKNGAEVHRAGLEVKPFITNPRAVEKCTRYIDCDLNRVFDLENLSKEMSEDLPYEVRRA 92
Query: 599 ALYIQWYSE 607
+
Sbjct: 93 QEINHLFGP 101
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.9 bits (64), Expect = 5.9
Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ--E 67
+++G GK+ +++ + + + + I+ + L++ + +
Sbjct: 33 TLVLGLRRTGKSSIIKIGINEL--NLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVK 90
Query: 68 RFRSITQSYYRSAHALILVYDIS---CQPTFDCLTDWLREIEEYASFKVLRVL 117
R S+ ++ +I+ +I + + L E+ + V+ VL
Sbjct: 91 RLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVL 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 29.1 bits (66), Expect = 6.0
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 201 RNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
NK+D ++ E+ D + ++ SA + +EKL I E E
Sbjct: 357 INKVDVVEKINEEEIKNKLGT--DRHMVKISALKGEGLEKLEESIYRETQE 405
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 28.8 bits (65), Expect = 6.6
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 202 NKIDREDREIPTEVGEDFAKRHDMYYLET-----SAKASDNVEKLFMQIAAELMEKLAEK 256
NKID+ + ++ ++ ++Y SA N+E L +I + E
Sbjct: 300 NKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSLEH 359
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 28.0 bits (63), Expect = 6.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 10 VVLVGNAGVGKTCLVRRFTQG 30
V L G+ G GKT L R QG
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQG 56
>3cmw_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 2.80A
{Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Length = 1706
Score = 28.9 bits (65), Expect = 7.2
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 236 DNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLES 295
N +++ E +++ +K+ + T K+L +
Sbjct: 278 ANA-TAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSGTTGSTGSMAIDENKQKALAA 336
Query: 296 CIKQIVKKF 304
+ QI K+F
Sbjct: 337 ALGQIEKQF 345
>3cmu_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 4.20A
{Escherichia coli}
Length = 2050
Score = 28.9 bits (65), Expect = 7.4
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 236 DNVEKLFMQIAAELMEKLAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLES 295
N +++ E +++ +K+ + T K+L +
Sbjct: 278 ANA-TAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSGTTGSTGSMAIDENKQKALAA 336
Query: 296 CIKQIVKKF 304
+ QI K+F
Sbjct: 337 ALGQIEKQF 345
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 28.7 bits (64), Expect = 8.2
Identities = 5/58 (8%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 285 PSFLSDKSL------------ESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLSLYY 330
+F +K L + ++ I+ + + ++ ++ + +I + + +
Sbjct: 35 SAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISF 92
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose
3-epimeras tagatose 3-epimerase, isomerase; 2.20A
{Thermotoga maritima}
Length = 290
Score = 28.2 bits (63), Expect = 8.7
Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 39/121 (32%)
Query: 181 EACFYLASLEGHSNNIHCMARNKIDREDREIP--------TEVGEDFAK---------RH 223
+ I + R + + E + E R+
Sbjct: 117 KHTEVAGMFGAL--VIIGLVRGRREGRSYEETEELFIESMKRLLELTEHAKFVIEPLNRY 174
Query: 224 DMYYLETSAKA--------SDNVEKLF----MQI----AAELMEKLAEKLTIMH----DR 263
+ ++ T A S+ V L M I E +++ EKL H +R
Sbjct: 175 ETDFINTIDDALRILRKINSNRVGILADTFHMNIEEVNIPESLKRAGEKLYHFHVADSNR 234
Query: 264 G 264
Sbjct: 235 W 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 9.1
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 19/116 (16%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEI----NNERI--KLQIWD 62
K+++ G GVGKT LV++ + + G T E+ +R ++ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIG--------FWTEEVRDPETKKRTGFRIITTE 53
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
+ S + Y ++ Q + L A +V++
Sbjct: 54 GKKKIFSSKFFTSKKL-----VGSYGVNVQYFEELAIPILERAYREAKKDRRKVII 104
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 28.4 bits (64), Expect = 9.5
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 379 RKTREEAQIASRRKKDKNNKKILNEIIK 406
+TR + + A + + N IL E++
Sbjct: 219 PETRRKVEEAFNSRCKEENSAILKELVT 246
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.6 bits (64), Expect = 9.5
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 10 VVLVGNAGVGKTCLV------RRFTQGVFPPG 35
V + G AG GK+ L +G F G
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGG 181
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 28.2 bits (64), Expect = 9.6
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 202 NKIDR-EDREIPTEVGEDFAKRHDMYYLET---SAKASDNVEKLFMQIAAELME 251
NK+D +++ + A + + +L+ SA+ NV+ + + L E
Sbjct: 124 NKVDNVQEKADLLPHLQFLASQMN--FLDIVPISAETGLNVDTIAAIVRKHLPE 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.389
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,039,980
Number of extensions: 677387
Number of successful extensions: 2330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2217
Number of HSP's successfully gapped: 256
Length of query: 730
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 629
Effective length of database: 3,881,772
Effective search space: 2441634588
Effective search space used: 2441634588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)