RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17467
(730 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 134 bits (339), Expect = 3e-37
Identities = 65/158 (41%), Positives = 108/158 (68%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+ Y +LFK++L+G++GVGKTC++ RF++ F +TIG+DF I+T+E++ +RIKLQIW
Sbjct: 1 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
DTAGQERFR+IT +YYR A ++LVYDI+ + +FD + +W+R IEE+AS V ++++G
Sbjct: 61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120
Query: 122 SGLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159
+ +++ G +D + S K +++ +
Sbjct: 121 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVEN 158
Score = 45.9 bits (108), Expect = 3e-06
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 192 HSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
+ + R++ E GE A + + ++ETSAKA+ NVE F +A ++
Sbjct: 110 ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169
Query: 252 KL 253
K+
Sbjct: 170 KM 171
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 133 bits (334), Expect = 1e-36
Identities = 97/117 (82%), Positives = 109/117 (93%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
DY FLFK+VL+GNAGVGKTCLVRRFTQG+FPPGQGATIGVDFMIKTVEIN E++KLQIWD
Sbjct: 1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQERFRSITQSYYRSA+ALIL YDI+C+ +F CL +WLREIE+YAS KV+ VLVG
Sbjct: 61 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 117
Score = 44.0 bits (103), Expect = 1e-05
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 200 ARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
E RE+ + E+F++ DMYYLETSAK SDNVEKLF+ +A L+ +
Sbjct: 117 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 133 bits (336), Expect = 2e-36
Identities = 64/117 (54%), Positives = 93/117 (79%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
+Y +LFK++L+GN+GVGK+CL+ RF+ + +TIGVDF IKTVE++ + +KLQIWD
Sbjct: 2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQERFR+IT SYYR +H +I+VYD++ Q +F+ + WL+EI+ YA+ VL++LVG
Sbjct: 62 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 118
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 123 bits (309), Expect = 3e-33
Identities = 53/95 (55%), Positives = 73/95 (76%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
+ K++L+G++GVGK+CL+ RF + F P TIG+DF IKTV+IN +++KLQIWDTAGQ
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
ERFR+IT +YYR A +ILVYDI+ + TF + W
Sbjct: 62 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW 96
Score = 53.6 bits (128), Expect = 5e-09
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH 223
+++V+ + F + + + NK D E R + + GE AK
Sbjct: 77 GIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL 136
Query: 224 DMYYLETSAKASDNVEKLFMQIAAELMEKL 253
+ ++E+SAK DNV ++F +A + EK+
Sbjct: 137 GIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 118 bits (297), Expect = 2e-31
Identities = 52/117 (44%), Positives = 83/117 (70%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWD 62
++ ++FK++++GN+ VGKT + R+ F P +T+G+DF +KT+ N++RIKLQIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 63 TAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
TAGQER+R+IT +YYR A IL+YDI+ + +F+ + DW +I+ Y+ +LVG
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 117
Score = 47.2 bits (111), Expect = 1e-06
Identities = 16/90 (17%), Positives = 35/90 (38%)
Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR 222
+LM + A + + + + + + ++R + +E G A
Sbjct: 80 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 139
Query: 223 HDMYYLETSAKASDNVEKLFMQIAAELMEK 252
+ E SAK + NV++ F ++ + EK
Sbjct: 140 LGFEFFEASAKDNINVKQTFERLVDVICEK 169
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 113 bits (283), Expect = 1e-29
Identities = 60/119 (50%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGAT-IGVDFMIKTVEINNERIKLQI 60
+ Y FKV+LVG++GVGKTCL+ RF G F G + +G+DF K ++++ ++KLQ+
Sbjct: 1 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60
Query: 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
WDTAGQERFRS+T +YYR AHAL+L+YD++ + +FD + WL EI EYA V +L+G
Sbjct: 61 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 119
Score = 52.2 bits (124), Expect = 2e-08
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 183 CFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLF 242
+ H + + +R + E GE AK + + ++ETSAK NV+ F
Sbjct: 102 LTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 161
Query: 243 MQIAAEL 249
IA EL
Sbjct: 162 TAIAKEL 168
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 111 bits (277), Expect = 8e-29
Identities = 54/116 (46%), Positives = 84/116 (72%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
Y +LFKVVL+G++GVGK+ L+ RFT+ F +TIGV+F ++++++ + IK QIWDT
Sbjct: 1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
AGQER+R IT +YYR A +LVYDI+ T++ + WL+E+ ++A ++ +LVG
Sbjct: 61 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 116
Score = 45.6 bits (107), Expect = 4e-06
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED-REIPTEVGEDFAKR 222
L+V+ E SN + + NK D R +PT+ FA++
Sbjct: 79 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 138
Query: 223 HDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
+++ ++ETSA S NVE+ F I E+ +++K
Sbjct: 139 NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 172
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 108 bits (271), Expect = 5e-28
Identities = 50/116 (43%), Positives = 82/116 (70%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
Y ++FK +++G+ GVGK+CL+ +FT+ F TIGV+F + +E++ ++IKLQIWDT
Sbjct: 1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
AGQERFR++T+SYYR A ++VYDI+ + T++ L+ WL + + + +L+G
Sbjct: 61 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 116
Score = 45.3 bits (106), Expect = 4e-06
Identities = 17/87 (19%), Positives = 36/87 (41%)
Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR 222
L++ + + +L + I + R++ E + FA+
Sbjct: 79 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 138
Query: 223 HDMYYLETSAKASDNVEKLFMQIAAEL 249
+ + +LE SAK +NVE F++ A ++
Sbjct: 139 NGLLFLEASAKTGENVEDAFLEAAKKI 165
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 108 bits (271), Expect = 5e-28
Identities = 55/107 (51%), Positives = 75/107 (70%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
ED K++++G +GVGK+ L+ RFT F P ATIGVDF +KT+ ++ + KL IW
Sbjct: 2 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
DTAGQERFR++T SYYR A +ILVYD++ + TF L +WL E+E Y
Sbjct: 62 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY 108
Score = 49.8 bits (118), Expect = 1e-07
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR 222
+L+ V + + L + ++ ++ + NKID+E+RE+ G FA++
Sbjct: 82 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK 141
Query: 223 HDMYYLETSAKASDNVEKLFMQIAAELME 251
H M ++E SAK D V+ F ++ ++++
Sbjct: 142 HSMLFIEASAKTCDGVQCAFEELVEKIIQ 170
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 108 bits (271), Expect = 5e-28
Identities = 56/116 (48%), Positives = 80/116 (68%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
Y FLFK +++GNAG GK+CL+ +F + F TIGV+F K + + + +KLQIWDT
Sbjct: 2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
AGQERFRS+T+SYYR A +LVYDI+ + T++ LT+WL + AS ++ +L G
Sbjct: 62 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 117
Score = 46.4 bits (109), Expect = 2e-06
Identities = 23/95 (24%), Positives = 39/95 (41%)
Query: 159 EHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGED 218
LL+ + A L + I K DRE+
Sbjct: 76 RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASR 135
Query: 219 FAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
FA+ +++ +LETSA +NVE+ F+Q A +++ K+
Sbjct: 136 FAQENELMFLETSALTGENVEEAFVQCARKILNKI 170
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 107 bits (267), Expect = 2e-27
Identities = 44/129 (34%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
Query: 3 DYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNE-------- 54
DY +L K++ +G++GVGKT + R+T F P T+G+DF K V N +
Sbjct: 1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60
Query: 55 --RIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
++ LQ+WDTAGQERFRS+T +++R A +L++D++ Q +F + +W+ +++ A +
Sbjct: 61 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120
Query: 113 VLRVLVGGT 121
+++ G
Sbjct: 121 NPDIVLIGN 129
Score = 49.1 bits (116), Expect = 3e-07
Identities = 18/95 (18%), Positives = 37/95 (38%)
Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKR 222
L+ + RN A+ + +I + + RE+ + A +
Sbjct: 91 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK 150
Query: 223 HDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
+ + Y ETSA NVEK + +M+++ + +
Sbjct: 151 YGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV 185
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 99.6 bits (247), Expect = 9e-25
Identities = 57/114 (50%), Positives = 83/114 (72%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+LFK +++G+ GVGK+CL+ +FT F P TIGV+F + V I+ ++IKLQIWDTAG
Sbjct: 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
QE FRSIT+SYYR A +LVYDI+ + TF+ LT WL + +++S ++ +L+G
Sbjct: 62 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 115
Score = 49.5 bits (117), Expect = 2e-07
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 155 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCM-ARNKIDRED-REIP 212
+ + A ++ + + + + + + S+N+ M NK D E R++
Sbjct: 68 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK 127
Query: 213 TEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEKL 257
E GE FA+ H + ++ETSAK + NVE+ F+ A E+ K+ + L
Sbjct: 128 REEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 172
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 96.2 bits (238), Expect = 9e-24
Identities = 50/118 (42%), Positives = 72/118 (61%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+V +G VGKT L+ RF F ATIG+DF+ KT+ + + I+LQ+WDTAGQE
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
RFRS+ SY R + A ++VYDI+ +F T W+ ++ V+ +LVG + L
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 118
Score = 48.4 bits (114), Expect = 4e-07
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 191 GHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
G I + + R++ E GE AK ++ ++ETSAKA NV++LF ++AA L
Sbjct: 103 GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 90.0 bits (222), Expect = 1e-21
Identities = 46/125 (36%), Positives = 73/125 (58%)
Query: 6 FLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
+ FKVVL+G VGKT LV R+ + F T+G F+ K + I +R+ L IWDTAG
Sbjct: 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
QERF ++ YYR ++ ILVYDI+ + +F + +W++E+ + ++ +VG L+
Sbjct: 62 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121
Query: 126 IVNEM 130
+
Sbjct: 122 KERHV 126
Score = 46.1 bits (108), Expect = 2e-06
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVG-EDFAKR 222
++V+ + + + C+ NKID E + E +A+
Sbjct: 78 GAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES 137
Query: 223 HDMYYLETSAKASDNVEKLFMQIAAELME 251
+ TSAK + +E+LF+ + ++E
Sbjct: 138 VGAKHYHTSAKQNKGIEELFLDLCKRMIE 166
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 90.0 bits (222), Expect = 2e-21
Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
LFKV+L+G+ GVGK+ L+ R+ F TIGV+F+ K +E++ + +QIWDTAGQ
Sbjct: 6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 65
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
ERFRS+ +YR + +L + + +F L++W +E YA K
Sbjct: 66 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK 111
Score = 46.1 bits (108), Expect = 3e-06
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDF 219
+L + + + E +Y E S + ID +R++ TE + +
Sbjct: 82 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK-IDISERQVSTEEAQAW 140
Query: 220 AKRH-DMYYLETSAKASDNVEKLFMQIAAELME 251
+ + D Y ETSAK + NV F + ++
Sbjct: 141 CRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 88.1 bits (217), Expect = 1e-20
Identities = 46/249 (18%), Positives = 76/249 (30%), Gaps = 69/249 (27%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP T+ D TV I E L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
+ + Y ++ + + +F+ + + + K +LVG
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG-------- 114
Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
+ DL +D + L P+ A A
Sbjct: 115 -----------------------TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL-- 149
Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247
+ Y+E SA ++ +F +
Sbjct: 150 -----------------------------------KAVKYVECSALTQKGLKNVFDEAIL 174
Query: 248 ELMEKLAEK 256
+E K
Sbjct: 175 AALEPPEPK 183
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 87.0 bits (214), Expect = 2e-20
Identities = 49/112 (43%), Positives = 75/112 (66%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VL+G + VGK+ LV RF +G F Q +TIG F+ +TV +++ +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
R+ S+ YYR A A I+VYDI+ + +F +W++E++ AS ++ L G
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118
Score = 43.1 bits (100), Expect = 2e-05
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELME 251
I R + + + +A + + ++ETSAK S NV ++FM IA +L +
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 81.3 bits (199), Expect = 2e-18
Identities = 48/111 (43%), Positives = 69/111 (62%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+VL+G A VGK+ +V RF F + TIG F+ + V IN +K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
F S+ YYR+A A ++VYD++ +F W++E+ E AS ++ LVG
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115
Score = 45.0 bits (105), Expect = 6e-06
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDR----EDREIPTEVGEDF 219
L+V+ + + + I + NKID +R++ E GE
Sbjct: 78 AALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKL 137
Query: 220 AKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
A+ + + ETSAK +NV +F+ I ++ K
Sbjct: 138 AEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 80.1 bits (196), Expect = 5e-18
Identities = 51/105 (48%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
+FK++++G++ VGKTCL RF G FP ATIGVDF + V+I+ ERIK+Q+WDTAGQ
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61
Query: 67 ERF-RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS 110
ERF +S+ Q YYR+ HA++ VYD++ +F L W+ E +++
Sbjct: 62 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL 106
Score = 45.0 bits (105), Expect = 5e-06
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED--REIPTEVGEDFAK 221
++ V+ + A +N+I + ++PT++ + FA
Sbjct: 78 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD 137
Query: 222 RHDMYYLETSAKAS---DNVEKLFMQIA 246
H M ETSAK D+VE +FM +A
Sbjct: 138 THSMPLFETSAKNPNDNDHVEAIFMTLA 165
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 80.0 bits (196), Expect = 5e-18
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V++G+ GVGK+ L +F QG+F TI D K VE++ ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
+F ++ Y ++ LVY I+ Q TF+ L D +I + V +LVG
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115
Score = 36.5 bits (83), Expect = 0.004
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 221 KRHDMYYLETSAKASDNVEKLFMQIAAEL 249
+ + +LE+SAK+ NV ++F + ++
Sbjct: 137 QWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 80.1 bits (196), Expect = 6e-18
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV+++G++GVGKT L+ ++ F ATIG DF+ K V +++ + +QIWDTAGQ
Sbjct: 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYAS----FKVLRVLVGGTS 122
ERF+S+ ++YR A +LV+D++ TF L W E AS V++G
Sbjct: 62 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121
Query: 123 GLKIVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159
L+ A C + S K ++ ++
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 158
Score = 41.6 bits (96), Expect = 1e-04
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 198 CMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEKLAEK 256
+ + ++++ Y ETSAK + NVE+ F IA +++ E
Sbjct: 116 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 174
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 78.8 bits (193), Expect = 1e-17
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L KV++VG+ GVGK+ L +F F T D K V ++ E +++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY-ASFKVLRVLVG 119
E + +I +Y+RS + V+ I+ +F D+ +I V +LVG
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116
Score = 42.2 bits (98), Expect = 5e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 219 FAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
A + ++ Y+ETSAK NV+K+F + E+ +
Sbjct: 135 RADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 78.1 bits (191), Expect = 2e-17
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG GVGK+ L + Q F TI D K V I+ E L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASF-KVLRVLVG 119
+ ++ Y R+ + V+ I+ +F+ + + +I+ V VLVG
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Score = 48.4 bits (114), Expect = 3e-07
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 185 YLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQ 244
+ ++ + + NK D R + + +D A+ + + Y+ETSAK VE F
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT 158
Query: 245 IAAELME 251
+ E+ +
Sbjct: 159 LVREIRQ 165
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 77.8 bits (190), Expect = 4e-17
Identities = 40/104 (38%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERI-KLQIWDTAG 65
+ KV+++G++GVGKT L+ R+ + ATIG DF+ K V ++ +++ +Q+WDTAG
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
QERF+S+ ++YR A +LVYD++ +F+ + W E +A
Sbjct: 62 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA 105
Score = 38.1 bits (87), Expect = 0.001
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 221 KRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
D+ TSAK + NV+ F +IA +++
Sbjct: 142 SLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 77.5 bits (190), Expect = 1e-16
Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 2 EDYKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
+ Y+ +++L+G GK+ +V++ T G+ + +++ ++
Sbjct: 1 QVYRATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIF----ETKFQVDKVNFHMF 52
Query: 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEE 107
D GQ R + A+I V S + ++E
Sbjct: 53 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQE 98
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 75.8 bits (185), Expect = 2e-16
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
+ K V+VG+ VGKTCL+ + FP T+ D +V + ++ L ++DT
Sbjct: 6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDT 64
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
AGQE + + Y ++ + + +F + + + + V +L+G
Sbjct: 65 AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG 120
Score = 45.7 bits (107), Expect = 4e-06
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 14/76 (18%)
Query: 190 EGHSNNIHCMARNKIDREDRE-------------IPTEVGEDFAKRH-DMYYLETSAKAS 235
E N + +ID D I E G+ AK Y+E SA
Sbjct: 109 EYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ 168
Query: 236 DNVEKLFMQIAAELME 251
++ +F + ++
Sbjct: 169 KGLKTVFDEAIIAILT 184
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 75.0 bits (183), Expect = 2e-16
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+KVV++G+ GVGK+ L +F G F TI DF K +E+++ L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 68 RFRSITQSYYRSAHALILVYDI-SCQPTFDCLTDWLREIEEYASFKVLRVLVG 119
+F S+ Y ++ ILVY + + Q D + I KV +LVG
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115
Score = 45.7 bits (107), Expect = 3e-06
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 202 NKID-REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
NK+D +RE+ + G A+ ++ETSAK+ V++LF +I ++
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 75.0 bits (183), Expect = 2e-16
Identities = 48/101 (47%), Positives = 66/101 (65%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KV L+G+ GVGK+ ++ RF + F P TIG FM KTV+ NE K IWDTAG E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
RFR++ YYR + A I+VYDI+ + TF L +W+RE+ ++
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH 105
Score = 44.2 bits (103), Expect = 9e-06
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 194 NNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
+ + RE+ +D+A ++ETSAK + N+ +LF++I+ +
Sbjct: 110 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 74.7 bits (182), Expect = 3e-16
Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
++++VG GKT ++ + G T + + I +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
R + + Y+++ LI V D + + + + L + + +LV
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 108
Score = 43.9 bits (102), Expect = 1e-05
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 196 IHCMARNKID---REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
+ A + EI ++G + + Y T A + D + + ++ +L
Sbjct: 104 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 74.7 bits (182), Expect = 3e-16
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
K+V+VG GVGK+ L +F Q F D K ++ +L I DTAGQ
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDY-DPTIEDSYTKICSVDGIPARLDILDTAGQ 64
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVL-RVLVGGTSGLK 125
E F ++ + Y R+ H +LV+ I+ + +F+ + +I VLVG + L+
Sbjct: 65 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124
Query: 126 IVNEMASAAGLLCTVDPALATALASDKTDLDEDE 159
++ + +A AS K L+ DE
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 158
Score = 44.3 bits (103), Expect = 1e-05
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 183 CFYLASLEGHSNNIHCMARNKIDREDR-EIPTEVGEDFAKRHDMYYLETSAKASDNVEKL 241
+ ++ + + NK D E + ++P F H + Y E SAK NV++
Sbjct: 100 FTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 159
Query: 242 FMQIAAELMEK 252
F Q+ + +
Sbjct: 160 FEQLVRAVRKY 170
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 74.3 bits (181), Expect = 5e-16
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+++V+VG GVGK+ L +F Q F TI D K I++ +L I DTAGQE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
F ++ + Y R+ +LV+ ++ + +F+ + + R+I +++ G
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIG 117
Score = 41.6 bits (96), Expect = 7e-05
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 198 CMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
+ R++ E G+ A++ + Y+E SAK NV++ F ++ + +
Sbjct: 115 LIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 73.1 bits (178), Expect = 1e-15
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K+V+VG+ GKTCL+ ++ FP T+ + + +E++ ++++L +WDTAG E
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
+ + Y +++ + I + + + + ++ V +LV
Sbjct: 62 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 112
Score = 45.4 bits (106), Expect = 5e-06
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 14/76 (18%)
Query: 190 EGHSNNIHCMARNKIDREDREI-------------PTEVGEDFAKRH-DMYYLETSAKAS 235
N + NK D + E E G D A R Y+E SAK
Sbjct: 102 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 161
Query: 236 DNVEKLFMQIAAELME 251
D V ++F ++
Sbjct: 162 DGVREVFEMATRAALQ 177
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 72.7 bits (177), Expect = 2e-15
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K V+VG+ VGKTCL+ +T FP + D V ++ + + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLK 125
+ + Y ++ + + +F+ + + +LVG L+
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122
Score = 43.5 bits (101), Expect = 2e-05
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 193 SNNIHCMARNKID-REDREIPTEV------------GEDFAKRH-DMYYLETSAKASDNV 238
N + K+D R+D++ ++ G AK + YLE SA +
Sbjct: 108 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 167
Query: 239 EKLFMQIAAELMEK 252
+ +F + ++
Sbjct: 168 KTVFDEAIRAVLCP 181
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 71.9 bits (175), Expect = 4e-15
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+++++G G GKT ++ R G + TIG + ++ + +KL +WD GQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVET----LSYKNLKLNVWDLGGQT 72
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
R + YY A+I V D + + + L + + + +LV
Sbjct: 73 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA 125
Score = 46.1 bits (108), Expect = 3e-06
Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED----REIPTEVGEDF 219
+ +V ++ + E + + NK D+ E+ E+
Sbjct: 88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE 147
Query: 220 AKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
K + +SA + + + + + E+
Sbjct: 148 LKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 71.1 bits (173), Expect = 5e-15
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 5/114 (4%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+++++G GKT ++ + G T + + +K +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTYKNVKFNVWDVGGQD 67
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGT 121
+ R + + YY LI V D + + D L I + +L+
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Score = 44.6 bits (104), Expect = 7e-06
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEV----GED 218
+ +V A + + + + I + NK D D P E+ G
Sbjct: 82 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 141
Query: 219 FAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
+ + Y + A + D + + + +
Sbjct: 142 RIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 70.8 bits (172), Expect = 9e-15
Identities = 46/245 (18%), Positives = 82/245 (33%), Gaps = 70/245 (28%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VG++ GKT L+ F + FP T+ + + EI+ +RI+L +WDT+G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVN 128
+ ++ Y + A+++ +DIS T D + + + +LVG
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG--------- 113
Query: 129 EMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLAS 188
K+DL D L
Sbjct: 114 ----------------------CKSDLRTDVSTLV------------------------- 126
Query: 189 LEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDN-VEKLFMQIAA 247
+ + + ++G Y+E SA S+N V +F
Sbjct: 127 -----ELSNHRQTPVSYDQGANMAKQIG-------AATYIECSALQSENSVRDIFHVATL 174
Query: 248 ELMEK 252
+ K
Sbjct: 175 ACVNK 179
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 69.7 bits (169), Expect = 2e-14
Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+K+V+VG+ GVGK+ L +F Q +F P TI D +K EI+N+ L + DTAGQE
Sbjct: 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
F ++ + Y R+ ++VY ++ + +F+ + + + I + +++
Sbjct: 64 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 114
Score = 44.3 bits (103), Expect = 1e-05
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 163 ACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRE-DREIPTEVGEDFAK 221
L++ V + + ++ + + NK+D R++ + G++ A
Sbjct: 78 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT 137
Query: 222 RHDMYYLETSAKASD-NVEKLFMQIAAELMEK 252
++++ Y+ETSAK NV+K F + + ++
Sbjct: 138 KYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 68.6 bits (166), Expect = 4e-14
Identities = 39/93 (41%), Positives = 68/93 (73%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K+V+VGN VGK+ +++R+ +G+F TIGVDF+ + +++N+E ++L +WDTAGQE
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
F +IT++YYR A A +LV+ + + +F+ ++ W
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFEAISSW 96
Score = 44.3 bits (103), Expect = 9e-06
Identities = 17/88 (19%), Positives = 30/88 (34%)
Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRH 223
++VF + E + +D I E E AKR
Sbjct: 77 ACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL 136
Query: 224 DMYYLETSAKASDNVEKLFMQIAAELME 251
+ + TS K NV ++F +A + ++
Sbjct: 137 KLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 68.8 bits (167), Expect = 8e-14
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ 66
L K++L+G GK+ +++ GQ T G I + + + ++ D GQ
Sbjct: 2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKG----IHEYDFEIKNVPFKMVDVGGQ 54
Query: 67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
R + S +++ + S + E
Sbjct: 55 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES 96
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 64.7 bits (156), Expect = 8e-13
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
K++ +G GKT L+ AT+ + + E+ IK +D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 69 FRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
R + + Y+ + ++ + D + FD L + A K + ++
Sbjct: 57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI 106
Score = 37.4 bits (85), Expect = 0.002
Identities = 3/55 (5%), Positives = 17/55 (30%)
Query: 192 HSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246
+ + ++ ++ + T + + + S + + F ++
Sbjct: 110 KIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 65.7 bits (159), Expect = 9e-13
Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 17/123 (13%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K++L+G GK+ +++ T G+ + + + ++ D GQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY----PFDLQSVIFRMVDVGGQR 56
Query: 68 RFRSITQSYYRSAHALILVYDISCQ-----------PTFDCLTDWLREIEEYASFKVLRV 116
R + + +++ + +S + + I +
Sbjct: 57 SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116
Query: 117 LVG 119
L
Sbjct: 117 LFL 119
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 64.7 bits (156), Expect = 1e-12
Identities = 37/102 (36%), Positives = 56/102 (54%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
FK+VLVG+ G GKT V+R G F AT+GV+ N IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
+F + YY A I+++D++ + T+ + +W R++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC 105
Score = 46.2 bits (108), Expect = 2e-06
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 194 NNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
N + NK+D +DR++ + F ++ ++ Y + SAK++ N EK F+ +A +L+
Sbjct: 107 NIPIVLCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 63.2 bits (152), Expect = 4e-12
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+++++G GKT ++++F TI + + KL IWD GQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
RS ++Y+ S LI V D + + L+ +
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE 98
Score = 38.5 bits (88), Expect = 0.001
Identities = 5/57 (8%), Positives = 14/57 (24%)
Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
I + D + H SA +++ + ++ +
Sbjct: 109 FANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 63.1 bits (152), Expect = 6e-12
Identities = 31/245 (12%), Positives = 65/245 (26%), Gaps = 53/245 (21%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K++L+G GK+ +V++ G I + + +++D GQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEA-----GTG----IVETHFTFKDLHFKMFDVGGQR 53
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIV 127
R + A+I +S + + + E + I+
Sbjct: 54 SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113
Query: 128 NEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLA 187
+E + L + EA Y+
Sbjct: 114 ---------------------LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ 152
Query: 188 SLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAA 247
N ++ +EI Y T A + NV+ +F +
Sbjct: 153 CQFEDLNK---------RKDTKEI--------------YTHFTCATDTKNVQFVFDAVTD 189
Query: 248 ELMEK 252
+++
Sbjct: 190 VIIKN 194
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 61.5 bits (148), Expect = 1e-11
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
++V + G GVGK+ LV RF +G F T+ D + + + LQI DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSH 61
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
+F ++ + HA ILVY I+ + + + L +I E ++
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM 112
Score = 43.8 bits (102), Expect = 1e-05
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 160 HVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCM-ARNKIDREDREI-PTEVGE 217
A +L+ + + ++G +I M NK D + E
Sbjct: 73 KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE 132
Query: 218 DFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
A+ ++ETSAK + NV++LF ++ +
Sbjct: 133 ALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 59.2 bits (142), Expect = 9e-11
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KV++VG GKT ++ +F+ + EI + +WD GQE
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSM-----NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
RS +YY + +I+V D + + + L ++ +
Sbjct: 71 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 111
Score = 46.1 bits (108), Expect = 3e-06
Identities = 7/55 (12%), Positives = 14/55 (25%)
Query: 195 NIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
K EI + K H + A + + + + + L
Sbjct: 121 IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 59.6 bits (143), Expect = 1e-10
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 6/115 (5%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQER 68
V+ VG GKT L R G + Q +I I V N I +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 69 FRSITQSYYRSAHALILVYDISCQPTF-----DCLTDWLREIEEYASFKVLRVLV 118
+ + SA A++ V D + + L L + + L +
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 115
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 58.2 bits (139), Expect = 2e-10
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K+ ++G VGK+ L +F +G F TI + K + +N + LQ+ DTAGQ+
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
+ Q+Y + ILVY ++ +F+ +
Sbjct: 64 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVI 97
Score = 40.9 bits (94), Expect = 1e-04
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 179 RNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNV 238
+ L + I + K +R I E G+ A+ + +LE+SAK +
Sbjct: 95 KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTA 154
Query: 239 EKLFMQIAAELM 250
+F +I E
Sbjct: 155 VDVFRRIILEAE 166
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 57.7 bits (138), Expect = 2e-10
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
K+ + G AGVGK+ LV RF F T+ I++E + ++I DT +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDT-AGQ 60
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
+ + R +LVYDI+ + +F+ +
Sbjct: 61 EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPL 94
Score = 43.1 bits (100), Expect = 2e-05
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 191 GHSNNIHCMARNKIDRED-REIPTEVGEDFAKRHDMYYLETSAKASD-NVEKLFMQIAAE 248
N + NK D + R++ TE GE A + E SA + N+ ++F ++ E
Sbjct: 103 KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE 162
Query: 249 LMEK 252
+ +
Sbjct: 163 VRRR 166
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 56.9 bits (136), Expect = 5e-10
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+++L+G GKT L+++ T F IK+V+ KL +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIGGQR 71
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
+ R +SY+ + LI V D + + F+ L E+ E + VL+
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124
Score = 41.5 bits (96), Expect = 1e-04
Identities = 5/44 (11%), Positives = 11/44 (25%)
Query: 206 REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
EI + + SA + V+ + +
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 55.0 bits (131), Expect = 2e-09
Identities = 17/101 (16%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
++ ++G+A GK+ L+ RF G + + + K + ++ + + I + AG
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
+ + A A+I V+ + + +F ++ ++
Sbjct: 64 DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL 99
Score = 44.2 bits (103), Expect = 1e-05
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 195 NIHCMARNKIDREDREIPTEVGEDFAKR-HDMYYLETSAKASDNVEKLFMQIAAELMEKL 253
+ R + Y ET A NV+++F ++A +++
Sbjct: 110 ALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169
Query: 254 AEK 256
++
Sbjct: 170 KQQ 172
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 53.6 bits (127), Expect = 7e-09
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+KV+L+G GVGK+ L R F G A +++ ++ E L ++D Q+
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
R + A ++VY ++ + +F+ ++
Sbjct: 60 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL 93
Score = 45.9 bits (107), Expect = 3e-06
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 197 HCMARNKIDR-EDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
+ NK D RE+ + G A D ++ETSA NV+ LF + ++ +
Sbjct: 108 IILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 52.0 bits (123), Expect = 2e-08
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
+++++G G GKT ++ R G T + + +K Q+WD G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
R + YY + A+I V D + L + E +
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELR 105
Score = 45.5 bits (106), Expect = 4e-06
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Query: 164 CLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDRED----REIPTEVGEDF 219
+ +V + E I + NK D E E+ +G
Sbjct: 76 VIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA 135
Query: 220 AKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
K +TSA +++ + L +
Sbjct: 136 LKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 52.0 bits (123), Expect = 2e-08
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
++ LVG GKT V G F T+G + I + +++WD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 58
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLV 118
RFRS+ + Y R A++ + D + Q + + L + + + + VLV
Sbjct: 59 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 109
Score = 38.5 bits (88), Expect = 7e-04
Identities = 5/41 (12%), Positives = 17/41 (41%)
Query: 206 REDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIA 246
+++E+ ++ + ++ S K DN++ +
Sbjct: 120 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 51.2 bits (121), Expect = 6e-08
Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 5/117 (4%)
Query: 4 YKFLFKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
YK K+V +G GKT L+ + E+ + +D
Sbjct: 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-----QHVPTLHPTSEELTIAGMTFTTFDL 64
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGG 120
G + R + ++Y + + ++ + D + + L + + + +L+ G
Sbjct: 65 GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121
Score = 30.4 bits (67), Expect = 0.54
Identities = 4/40 (10%), Positives = 8/40 (20%)
Query: 210 EIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
V + S + F +A +
Sbjct: 146 TGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 47.1 bits (110), Expect = 1e-06
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 3/116 (2%)
Query: 7 LFKVVLVGNAGVGKTCLVRRFTQGVFP-PGQGATIGVDFMIKTVEINNERIKLQIWDTAG 65
++VVL+G GVGK+ L F +G D +T+ ++ E + + D
Sbjct: 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62
Query: 66 QERFRSITQSYYRSAHALILVYDIS--CQPTFDCLTDWLREIEEYASFKVLRVLVG 119
+ + L+ ++ + + +LVG
Sbjct: 63 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 118
Score = 42.4 bits (98), Expect = 4e-05
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 196 IHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAELMEK 252
I + RE+ G A D ++ETSA NV++LF I ++ +
Sbjct: 114 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 46.6 bits (109), Expect = 3e-06
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 11/104 (10%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
+++ G GKT L+ T P T+ + + + + + D G +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFPGHVKL 59
Query: 70 RSITQSYY-----RSAHALILVYDISCQPTFDCLTDWLREIEEY 108
R Y + +V ++L +I
Sbjct: 60 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 103
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 40.1 bits (92), Expect = 3e-04
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KVV+ G GK+ L+ G G + I+ + + L I DTAG
Sbjct: 2 MKVVIAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60
Query: 68 RFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
+ + D T
Sbjct: 61 EASDEVERIGIERAWQEIEQADRVLFMVDGTTTD 94
Score = 27.0 bits (58), Expect = 5.5
Identities = 7/85 (8%), Positives = 19/85 (22%), Gaps = 8/85 (9%)
Query: 173 CIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSA 232
A + ++ T ++ + + SA
Sbjct: 85 LFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSA 144
Query: 233 KASDNVEKLFMQIAAELMEKLAEKL 257
+ + V+ L L + +
Sbjct: 145 RTGEGVD--------VLRNHLKQSM 161
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 34.6 bits (78), Expect = 0.016
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 9 KVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAG--- 65
++V+VG VGK+ L+ R G + + EI I +I DTAG
Sbjct: 2 RMVIVGKPNVGKSTLLNRLL-NEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 66 ------QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
+ T A ++ V D S +
Sbjct: 61 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL 102
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 34.6 bits (78), Expect = 0.021
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Query: 10 VVLVGNAGVGKTCLVRRFTQ------GVFPPGQGATIGVDFMIKTVEINNERIKLQIWDT 63
V LVG GK+ L+ T+ +GV + + I I
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 64 AGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
+ + + L+ V D + +P T
Sbjct: 64 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLR 101
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 34.7 bits (79), Expect = 0.034
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 4/103 (3%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIK--TVEINNERIKLQIWDTAG 65
V + G G GK+ + A GV + + + WD G
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116
Query: 66 QERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
+Y YD + +I +
Sbjct: 117 IGSTNFPPDTYLEKMKFYE--YDFFIIISATRFKKNDIDIAKA 157
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus
abyssi [TaxId: 29292]}
Length = 149
Score = 31.6 bits (72), Expect = 0.15
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 253 LAEKLTIMHDRGVGMLTRIYNIKKACGDAKSKPSFLSDKSLESCIKQ-----IVKKFPN 306
+ ++ + G+ L Y +K G A + + ++Q V+K P
Sbjct: 57 ILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 115
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 31.6 bits (70), Expect = 0.19
Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQE 67
KV +VG VGK+ L G E+ + K DTAG
Sbjct: 9 IKVAIVGRPNVGKSTLFNAIL-NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67
Query: 68 RFRSITQSYYRSAH 81
R +
Sbjct: 68 RKSRVEPRTVEKYS 81
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 31.7 bits (70), Expect = 0.21
Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 7/101 (6%)
Query: 8 FKVVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQ- 66
+V G + GK+ + T T G +I E+ + + + +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76
Query: 67 ------ERFRSITQSYYRSAHALILVYDISCQPTFDCLTDW 101
+++ Y +L + + D
Sbjct: 77 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ 117
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.9 bits (68), Expect = 0.34
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 10 VVLVGNAGVGKTCLVRRFTQ 29
V +VG VGK+ L+
Sbjct: 8 VAIVGKPNVGKSTLLNNLLG 27
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 31.2 bits (70), Expect = 0.49
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 10 VVLVGNAGVGKTCLVRRFTQ 29
VL+G GVGKT +V Q
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQ 65
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 30.4 bits (67), Expect = 0.64
Identities = 27/250 (10%), Positives = 61/250 (24%), Gaps = 31/250 (12%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
V ++G+ GKT L+ + I + ++ + R
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 70 RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFKVLRVLVGGTSGLKIVNE 129
+ + L + +I E G +
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE-----------GFKPQTQEALN 116
Query: 130 MASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASL 189
+ V A++K D V + + + + L
Sbjct: 117 ILRMYRTPFVV--------AANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYEL 168
Query: 190 EGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYLETSAKASDNVEKLFMQIAAEL 249
+ + + E + T+ + + SA + + +L +
Sbjct: 169 ------VGKLHEEGFESERFDRVTDFASQVS------IIPISAITGEGIPELLTMLMGLA 216
Query: 250 MEKLAEKLTI 259
+ L E+L I
Sbjct: 217 QQYLREQLKI 226
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 30.6 bits (68), Expect = 0.67
Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 8/116 (6%)
Query: 8 FKVVLVGNAGVGKTCLV------RRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIW 61
++++G GVGK+ V R + F + V +N I
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92
Query: 62 DTAGQERFRSITQSYYRS--AHALILVYDISCQPTFDCLTDWLREIEEYASFKVLR 115
+ +I +S+ L+ V + + + I + +
Sbjct: 93 GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN 148
>d3cdda2 b.106.1.1 (A:2-180) Baseplate protein gpP {Shewanella
oneidensis [TaxId: 70863]}
Length = 179
Score = 30.1 bits (67), Expect = 0.69
Identities = 8/76 (10%), Positives = 29/76 (38%)
Query: 612 RVSAGNICFSLNQRAFVSLTAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNELSLKA 671
I S++ R + + +I + + +F++ + + P+G+K++ +
Sbjct: 80 SYDESTITISVSGRDKTADLVDCSIDYPSGQFNNQTLTQIADIVCKPFGIKVIVNTDVGE 139
Query: 672 FNAAHEMVHNQSDVNF 687
++ ++
Sbjct: 140 PFQRIQIEQGETPHEL 155
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.3 bits (67), Expect = 0.71
Identities = 41/257 (15%), Positives = 66/257 (25%), Gaps = 43/257 (16%)
Query: 10 VVLVGNAGVGKTCLVRRFTQ---------------GVFPPGQGATIGVDFMIKTVEINNE 54
VV VG AG GKT L F + GV +I V + EI E
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 55 RIKLQ---IWDTAGQERFRSITQSY--YRSAHALILVYDISCQPTFDCLTDWLREIEEYA 109
+ + + ++ D Q ++ + E
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 110 SFKVLRVLVGGTSGLKIVNEMASA-AGLLCTVDPALATALASDKTDLDEDEHVLACLLMV 168
+ ++ + K + LL + T A +K DL +E
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHR--- 179
Query: 169 FVAVCIPKLARNEACFYLASLEGHSNNIHCMARNKIDREDREIPTEVGEDFAKRHDMYYL 228
+ + L M + + + TEV L
Sbjct: 180 ------------KYFEDIDYLTARLKLDPSMQGL-MAYKMCSMMTEVLPPVR------VL 220
Query: 229 ETSAKASDNVEKLFMQI 245
SAK + E L
Sbjct: 221 YLSAKTREGFEDLETLA 237
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 30.1 bits (66), Expect = 0.75
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 6/88 (6%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
++ G + VGK+ L+ R T G+ G + I E +I D G
Sbjct: 3 IIFAGRSNVGKSTLIYRLT------GKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFM 56
Query: 70 RSITQSYYRSAHALILVYDISCQPTFDC 97
+ + I+ + D
Sbjct: 57 MGLPKEVQERIKDEIVHFIEDNAKNIDV 84
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 29.3 bits (64), Expect = 1.0
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 10 VVLVGNAGVGKTCLVRRFTQ 29
V++VG VGK+ L + +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVK 22
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 29.2 bits (64), Expect = 1.3
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 158 DEHVLACLLMVFVAVCIPKLARNEAC-FYLASLEGHSNNIHCMARNKIDREDREIPTEVG 216
D +L + + +L N + +++ + + R+I
Sbjct: 111 DGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 170
Query: 217 EDFAKRHDMYYLETSAKASDNVEKLFMQI 245
+A+ ++ + SA N++ L I
Sbjct: 171 GTWAE--NVPIIPVSALHKINIDSLIEGI 197
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 28.6 bits (62), Expect = 2.5
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 10 VVLVGNAGVGKTCLVRRF 27
+++G GK+ +++
Sbjct: 32 TLVLGLRRTGKSSIIKIG 49
>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 307
Score = 28.8 bits (64), Expect = 2.6
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 526 HGEKTVAALYIQWYSEVLLRRVSETQVKSLNLL----NFLRVYTVENYVHIDMTRVFNNA 581
HG + + L+ +E L + N V Y+ D+ RVF+
Sbjct: 17 HGNELTGVFLVTH----WLKNGAEVHRAGLEVKPFITNPRAVEKCTRYIDCDLNRVFDLE 72
Query: 582 LLQQTQRMDSHGEKTVAALYIQWYSE 607
L + D E A +
Sbjct: 73 NLSKEMSEDLPYEVRRAQEINHLFGP 98
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 28.5 bits (63), Expect = 3.0
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 30/131 (22%)
Query: 1 MEDYKFLFKVVLVGNAGVGKTCLVRRFTQ--GVFPPGQ----------------GATI-- 40
M+ + + ++ + GK+ L Q G+ + G TI
Sbjct: 11 MDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKS 70
Query: 41 ----------GVDFMIKTVEINNERIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS 90
D + + + + D+ G F S + R ++V D
Sbjct: 71 TAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTI 130
Query: 91 CQPTFDCLTDW 101
T
Sbjct: 131 EGVCVQTETVL 141
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.8 bits (60), Expect = 3.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 10 VVLVGNAGVGKTCLVRRFTQ 29
+ +VG VGK+ L+ +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLG 27
>d1jeyb1 b.131.1.2 (B:242-545) Ku80 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 27.2 bits (60), Expect = 6.4
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 407 PGAESYRKTREELTTMDKLHMALTELCFAINYCTNIQVWDFTFAPREYLHQHLESRFSRA 466
++ Y T +L +D L +++ T ++ T P + + RA
Sbjct: 198 KNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRA 257
Query: 467 LVGMVMFNPDTSEIAK----PSELLASVRAYMNVLQTV 500
L P I P+E+ + ++ ++T+
Sbjct: 258 LHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTL 295
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 24.8 bits (54), Expect = 6.5
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 287 FLSDKSLESCIKQIVKKFPNIDIKSVSGISQIRSDIVKSLS 327
FL L+ I +I KK GI+++ D+V +S
Sbjct: 2 FLLQAPLQRRILEIGKKH---------GITELHPDVVSYVS 33
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 26.8 bits (58), Expect = 6.9
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 10 VVLVGNAGVGKTCLVRR------------FTQGVFPPGQGATIGVDFMIKTVEINNERIK 57
+V+ G +G GK+ L+++ + P G G D+ +V+ IK
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 63
Query: 58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEYASFK 112
+ E + Y + ++ V D ++ ++
Sbjct: 64 NNEF----IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELN 114
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 331
Score = 27.5 bits (60), Expect = 7.2
Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 556 NLLNFLR---VYTVENYVHIDMTRVFNNALLQQTQRMDSHGEKTVAALYIQWYSEV 608
NL VY ++ +D + + + +L + + + V ++++
Sbjct: 44 NLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPP 99
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.9 bits (58), Expect = 7.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 9 KVVLVGNAGVGKTCLVR 25
K+++ G GVGKT LV+
Sbjct: 2 KIIITGEPGVGKTTLVK 18
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 26.5 bits (58), Expect = 8.8
Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 16/94 (17%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATI---------------GVDFMIKTVEINNE 54
V +G+ GKT L T+ + G GA G+ VE +
Sbjct: 6 VGTIGHVDHGKTTLTAAITK-ILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 64
Query: 55 RIKLQIWDTAGQERFRSITQSYYRSAHALILVYD 88
D G + + ILV
Sbjct: 65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVA 98
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 26.8 bits (58), Expect = 9.0
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPP 34
V++ G+ G GK+ VR + P
Sbjct: 31 VLVFGDRGTGKSTAVRALA-ALLPE 54
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 26.4 bits (57), Expect = 9.3
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Query: 10 VVLVGNAGVGKTCLVRRFTQGVFPPGQGATIGVDFMIKTVEINNERIKLQIWDTAGQERF 69
V LVG VGK+ L+ + + + VE ++ R + D G
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR-SFVMADLPGLIEG 62
Query: 70 RSITQSYYRSAHALILVYDISCQPTFDCLTDWLREIEEY 108
I + + ++Y
Sbjct: 63 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDY 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.389
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,653,379
Number of extensions: 125058
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 155
Length of query: 730
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 638
Effective length of database: 1,144,436
Effective search space: 730150168
Effective search space used: 730150168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.3 bits)