BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17468
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1128
Score = 360 bits (924), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 182/305 (59%), Positives = 238/305 (78%), Gaps = 7/305 (2%)
Query: 236 AEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLL 295
E + FNAEE+SD++E+R+L++L+GPYGMK L+E+LMWHI+SQV ELKKLV N +VL
Sbjct: 819 TENELTFNAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVLT 878
Query: 296 LLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNS 355
+RT FDKP+ M KRL +V++VL+RMTIIGVIL+F+ +AQ AL++VL +PFL++S
Sbjct: 879 QMRTSFDKPDQMAALFKRLSSVDSVLKRMTIIGVILSFRSLAQEALRDVLSYHIPFLVSS 938
Query: 356 VQDFYQHSPV-GDPKI---VNEMASAAGLLCTVDPALATALASDKTD--LDEDEHVLACL 409
++DF H P D K+ V E++SAAGL C +DPAL AL+S K++ E+E+ +ACL
Sbjct: 939 IEDFKDHIPRETDMKVAMNVYELSSAAGLPCEIDPALVVALSSQKSENISPEEEYKIACL 998
Query: 410 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKE 469
LMVFVAV +P LA N Y ++EGH NNIHC+A AIN I +ALFT+ +G +EDR+KE
Sbjct: 999 LMVFVAVSLPTLASNVMSQYSPAIEGHCNNIHCLAKAINQIAAALFTI-HKGSIEDRLKE 1057
Query: 470 FLALTSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYH 529
FLAL SSSLL++GQ+ D+ +TR+R+SVYLLL IVQESPFLTMDLLESCFPY L+RNAYH
Sbjct: 1058 FLALASSSLLKIGQETDKTTTRNRESVYLLLDMIVQESPFLTMDLLESCFPYVLLRNAYH 1117
Query: 530 AVSKQ 534
AV KQ
Sbjct: 1118 AVYKQ 1122
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 169/231 (73%), Gaps = 6/231 (2%)
Query: 1 MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKP 60
+DYE P+KK+ EEF+PH+K L AL+SL+ +Y RN+SADQ RN Q LSL+ P +L P
Sbjct: 183 VDYENPLKKMMEEFVPHSKSLSDALISLQMVYPRRNLSADQWRNAQLLSLISAPSTMLNP 242
Query: 61 ARTERMSCEYLSQESLDRWIIFGFMLCHQPLSQEPVS-KLWTAALENNWVIALFRDEVIY 119
A+++ M CEYLS +++++WIIFGF+LCH L+ + + LW AL+++ ++LFRDEV +
Sbjct: 243 AQSDTMPCEYLSLDAMEKWIIFGFILCHGILNTDATALNLWKLALQSSSCLSLFRDEVFH 302
Query: 120 IHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREKRKFLRTALKELGLLFSDQPG 179
IH+ + F I+GY KR++++++C AVS A HRE+RKFLR+ALKEL + SDQPG
Sbjct: 303 IHKAAEDLFVNIRGYNKRINDIRECKEAAVSHAGSMHRERRKFLRSALKELATVLSDQPG 362
Query: 180 LLGPKALLIFIGLSYARDEVYWLLRHNDNPPVQKGKSKSAEDLVDRQLPEL 230
LLGPKAL +F+ LS+ARDE+ WLLRH DN P KSA+D +D+ + EL
Sbjct: 363 LLGPKALFVFMALSFARDEIIWLLRHADNMP-----KKSADDFIDKHIAEL 408
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 11 SEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPARTERMS 67
+E+ IP AK+L + +Y Y ++ ++RN+ LS+ Q +KP R +S
Sbjct: 462 TEKMIPKAKILIATVAGRTVVYDYADLDFQELRNNFDLSI---DEQEIKPGRQIELS 515
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 11 SEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPARTERMS 67
+E+ IP AK+L + +Y + +++ ++RN+ LS+ Q +KP R +S
Sbjct: 462 TEKMIPRAKILIATVAGRTVVYDFADLAFQELRNNFDLSI---DEQEIKPGRQIELS 515
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 11 SEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPARTERMS 67
+E+ IP AK+L + +Y + ++ ++RN+ LS+ Q +KP R +S
Sbjct: 462 TEKMIPRAKILIATVAGRTVVYDFADLDFQELRNNFDLSI---DEQEIKPGRQIELS 515
>pdb|3HV9|A Chain A, Crystal Structure Of Fimx Eal Domain From Pseudomonas
Aeruginosa
Length = 265
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 19 KLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNP-GQLLKPARTERMSCEYLSQESLD 77
+LLFQ ++SLR D N + L + NP GQ + PA + E E +D
Sbjct: 31 RLLFQPVISLRG---------DSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKID 81
Query: 78 RWIIF 82
RW+I
Sbjct: 82 RWVIL 86
>pdb|3HV8|A Chain A, Crystal Structure Of Fimx Eal Domain From Pseudomonas
Aeruginosa Bound To C-Di-Gmp
Length = 268
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 19 KLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNP-GQLLKPARTERMSCEYLSQESLD 77
+LLFQ ++SLR D N + L + NP GQ + PA + E E +D
Sbjct: 34 RLLFQPVISLRG---------DSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKID 84
Query: 78 RWIIF 82
RW+I
Sbjct: 85 RWVIL 89
>pdb|4AFY|A Chain A, Crystal Structure Of The Fimx Eal Domain In Complex With
Reaction Product Pgpg
pdb|4AFY|B Chain B, Crystal Structure Of The Fimx Eal Domain In Complex With
Reaction Product Pgpg
pdb|4AG0|A Chain A, Crystal Structure Of Fimx Eal Domain
pdb|4AG0|B Chain B, Crystal Structure Of Fimx Eal Domain
Length = 274
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 19 KLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNP-GQLLKPARTERMSCEYLSQESLD 77
+LLFQ ++SLR D N + L + NP GQ + PA + E E +D
Sbjct: 40 RLLFQPVISLRG---------DSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKID 90
Query: 78 RWIIF 82
RW+I
Sbjct: 91 RWVIL 95
>pdb|4J40|A Chain A, Crystal Structure Of The Dual-domain Ggdef-eal Module Of
Fimx From Pseudomonas Aeruginosa
pdb|4J40|B Chain B, Crystal Structure Of The Dual-domain Ggdef-eal Module Of
Fimx From Pseudomonas Aeruginosa
Length = 437
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 19 KLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNP-GQLLKPARTERMSCEYLSQESLD 77
+LLFQ ++SLR D N + L + NP GQ + PA + E E +D
Sbjct: 203 RLLFQPVISLRG---------DSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKID 253
Query: 78 RWIIF 82
RW+I
Sbjct: 254 RWVIL 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,753,121
Number of Sequences: 62578
Number of extensions: 585309
Number of successful extensions: 1429
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 12
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)