Query psy17468
Match_columns 538
No_of_seqs 92 out of 94
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 23:18:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_B NCK-associated protein 100.0 7E-180 3E-184 1520.4 41.1 532 1-538 183-1126(1128)
2 1evs_A Oncostatin M; 4-helix b 76.7 0.39 1.3E-05 44.9 -0.7 19 430-448 115-133 (187)
3 1wrd_A TOM1, target of MYB pro 64.6 36 0.0012 29.1 8.9 67 275-342 7-87 (103)
4 3p8c_A Cytoplasmic FMR1-intera 54.0 26 0.00087 42.0 8.0 101 249-352 910-1029(1253)
5 1oxz_A ADP-ribosylation factor 53.0 1.3E+02 0.0045 28.4 11.5 71 269-340 64-150 (186)
6 1naf_A ADP-ribosylation factor 46.8 1.4E+02 0.0049 27.5 10.4 72 269-341 48-135 (158)
7 1o3x_A ADP-ribosylation factor 45.4 1.6E+02 0.0055 26.5 10.3 72 269-341 39-126 (140)
8 1tff_A Ubiquitin thiolesterase 26.2 3.5E+02 0.012 26.0 9.9 57 328-384 130-193 (234)
9 2fcw_A Alpha-2-macroglobulin r 24.1 2.4E+02 0.0084 24.7 7.4 27 93-123 6-32 (109)
10 4adz_A CSOR; transcription, co 22.0 2E+02 0.0069 26.1 6.7 55 274-342 59-113 (136)
11 3bzy_B ESCU; auto cleavage pro 21.5 1.2E+02 0.0039 25.1 4.7 39 369-407 30-71 (83)
12 2vt1_B Surface presentation of 21.3 1E+02 0.0035 26.1 4.4 46 369-414 30-78 (93)
13 2zfy_A Ubiquitin thioesterase 20.2 5.4E+02 0.018 24.6 9.9 58 327-384 132-196 (234)
No 1
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=100.00 E-value=7.4e-180 Score=1520.42 Aligned_cols=532 Identities=57% Similarity=0.960 Sum_probs=507.7
Q ss_pred CCCccchhhhhhhhchhhHHHHHHHHHHHHHHhccCcchHhhhhcCccccCCCCCcccCccccccccccccchhhhhhhh
Q psy17468 1 MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPARTERMSCEYLSQESLDRWI 80 (538)
Q Consensus 1 ~dyd~PlKkL~eef~p~~~~i~~aL~Sl~~~y~rr~~~a~~wR~~~~Lsl~~~P~~~l~pa~sd~~~cE~ls~e~m~~Wi 80 (538)
.|||+|+|||+|||+||+++|++||.||+++|+||+.+|++||++|+||++++|++|++|+++|||+|||+|+++|+|||
T Consensus 183 ~~yd~PlkkL~eef~p~~~~I~~aL~Sl~~~~~~r~~~a~~wR~~~~LSl~~~P~~~~~pa~~d~~~~ells~e~m~~WI 262 (1128)
T 3p8c_B 183 VDYENPLKKMMEEFVPHSKSLSDALISLQMVYPRRNLSADQWRNAQLLSLISAPSTMLNPAQSDTMPCEYLSLDAMEKWI 262 (1128)
T ss_dssp HHTSSHHHHHHHHTTTTHHHHHHHHHGGGGTHHHHSCCHHHHHHTTTTCSSSSGGGTTSCCCCTTHHHHHSCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccCcHHHHhhcCcCCCcCChhhhCCcccccchhHHHHhHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeeeccCCCCCC-chhHHHHHHHhcCCceEEeechhhHhhHHHHHHHHhhhhhcccchhHHhhHHHHHHHHhhHHHHHH
Q psy17468 81 IFGFMLCHQPLSQ-EPVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREK 159 (538)
Q Consensus 81 i~g~L~cp~~L~~-~~~~~lw~~aL~~~~vl~LfRdev~~iH~~~e~~~~s~K~y~Kr~~~vkE~~~~A~~~~~~~HreR 159 (538)
+||||+||++|++ ++++++|++||++|||||||||||++||+++|++|+|+|+||||+++||||+++|+++||..||||
T Consensus 263 ifg~L~cp~~L~~~~~~~~l~~~aL~~~~vl~LfRdevi~iH~~~q~~~~s~K~y~K~v~~ikE~~~~A~~~a~~~HreR 342 (1128)
T 3p8c_B 263 IFGFILCHGILNTDATALNLWKLALQSSSCLSLFRDEVFHIHKAAEDLFVNIRGYNKRINDIRECKEAAVSHAGSMHRER 342 (1128)
T ss_dssp HHHHHHTTHHHHHCHHHHHHHHHHHTTCSEEEEETTEEEEHHHHHHHHHTTCGGGTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeecchhhccChhHHHHHHHHhccCCEEEEecceeeeHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcchHHHHHHhhhhhhhhhHHHhhcCCCCCCCCCCCCCccccccCcchHHHH-------
Q psy17468 160 RKFLRTALKELGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLLRHNDNPPVQKGKSKSAEDLVDRQLPELEM------- 232 (538)
Q Consensus 160 R~~LR~aLkel~~ll~DqPgLLgPK~l~vf~aLs~aRdEV~Wl~rH~~~~p~~~k~k~~~ed~~D~~l~eLLf------- 232 (538)
|+|||++||||+++|+|||||||||+++||||||||||||+|||||++++|+ | ++||++|++|+||||
T Consensus 343 R~~LR~~Lkel~~i~~DqPgLLgPK~~~v~~aLs~ArdEV~W~~rH~~~~pk--k---~~~d~~D~~i~eLLf~m~eLr~ 417 (1128)
T 3p8c_B 343 RKFLRSALKELATVLSDQPGLLGPKALFVFMALSFARDEIIWLLRHADNMPK--K---SADDFIDKHIAELIFYMEELRA 417 (1128)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHSCC--S---STTTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccChhHHHHHHHHHHHHHHHHHHHHccccCCC--C---CcccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999994 3 699999999999999
Q ss_pred ---H----------------------------------------------------------------------------
Q psy17468 233 ---K---------------------------------------------------------------------------- 233 (538)
Q Consensus 233 ---k---------------------------------------------------------------------------- 233 (538)
|
T Consensus 418 Lv~k~~~vIqrYy~qyLs~~Da~~L~~~iq~l~~~p~ees~i~ss~~~tl~~L~~~q~e~~~~~Df~~lRlDW~Rlqa~~ 497 (1128)
T 3p8c_B 418 HVRKYGPVMQRYYVQYLSGFDAVVLNELVQNLSVCPEDESIIMSSFVNTMTSLSVKQVEDGEVFDFRGMRLDWFRLQAYT 497 (1128)
T ss_dssp HHHHSHHHHHHHHHHHHHHTHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHTCCHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCChhhhccCCCCCcHHHHHHHHHHHHHH
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17468 234 -------------------------------------------------------------------------------- 233 (538)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (538)
T Consensus 498 S~~~~~l~l~~~~~l~~~mN~~~fhsk~VD~lde~L~e~sdLs~l~FY~~~~~~~F~~cl~~p~q~ry~~af~~ics~F~ 577 (1128)
T 3p8c_B 498 SVSKASLGLADHRELGKMMNTIIFHTKMVDSLVEMLVETSDLSIFCFYSRAFEKMFQQCLELPSQSRYSIAFPLLCTHFM 577 (1128)
T ss_dssp HSTTCSSCGGGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCGGGGGCHHHHHHHHHHHHHSHHHHTTTTHHHHHGGGGG
T ss_pred HccccCcCcchhHHHHHHHHHHHHHHHHHhhHHHHHHHhcchhheeehhHHHHHHHHHHhcCcccchHHHHHHHHHhchh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy17468 234 -------------------------------------------------------------------------------- 233 (538)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (538)
T Consensus 578 ~~~h~~cPEE~~~i~~~sl~~~~~fLe~ia~~~~~~i~~i~~~~~~l~~qLlP~~aA~~i~~~~~~k~kk~~~~k~~~~~ 657 (1128)
T 3p8c_B 578 SCTHELCPEERHHIGDRSLSLCNMFLDEMAKQARNLITDICTEQCTLSDQLLPKHCAKTISQAVNKKSKKQTGKKGEPER 657 (1128)
T ss_dssp GGCCTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGGHHHHHHHTTC--------------
T ss_pred ccCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCHHHHHHHHHHHHHHhcccccCccCCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy17468 234 -------------------------------------------------------------------------------- 233 (538)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (538)
T Consensus 658 ~~PG~ES~r~~r~~~t~~dkl~~~LteLc~aln~~~~i~V~dh~f~PrEyL~~~Le~~f~~~l~~~~~~~~~~~~i~RPS 737 (1128)
T 3p8c_B 658 EKPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKSIVGMTMYNQATQEIAKPS 737 (1128)
T ss_dssp CCTTGGGCCSCTTSCCHHHHHHHHHHHHHHHHTSCSCEEETTEEECHHHHHHHHHHHHHHHHHHHHTTCBTTTTBCCCHH
T ss_pred CCCCccccccChHHHhhHHHHHHHHHHHHHHhccCCCeeEEeeeeccHHHHHHHHHHHHHHHHHHHhccCCCccccCChH
Confidence
Q ss_pred ----------------------------------------------------------------------------Hh--
Q psy17468 234 ----------------------------------------------------------------------------FI-- 235 (538)
Q Consensus 234 ----------------------------------------------------------------------------Fv-- 235 (538)
||
T Consensus 738 ell~~l~a~m~vlq~~e~~v~iDvt~~i~~vLLqqtq~~D~~G~~tit~~yt~WYle~llr~~s~~~iv~sp~~~~Fvs~ 817 (1128)
T 3p8c_B 738 ELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLRQVSNGHIAYFPAMKAFVNL 817 (1128)
T ss_dssp HHHHHHHHHHHHHHHGGGTSSCCHHHHHHHHHHHTTSSBCTTSCBCHHHHHHHHHHHTHHHHHHTTSEEEETTTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCccccCCCccHHHHHHHHHHHHHHHhccCCceEEccHHHHhhcC
Confidence 45
Q ss_pred -hcCCcccccccCCCHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHhhh
Q psy17468 236 -AEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRL 314 (538)
Q Consensus 236 -~~~~~~f~AE~ysD~~ELrAL~eLiGPYG~k~L~e~L~~hia~qv~elkklv~~N~d~L~~lr~~f~~p~~m~~~lk~L 314 (538)
+.|+++|+||+|||++|||||||||||||||+|+|+|||||++||+||||+|++|+|+|+++|+||||||+|++++|+|
T Consensus 818 ~~~g~~~f~AE~~tD~~ELrAL~eLiGPYG~k~l~~~L~~hi~~~v~elk~~v~~N~~~L~~lr~~~~~~~~m~~~lk~l 897 (1128)
T 3p8c_B 818 PTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVLTQMRTSFDKPDQMAALFKRL 897 (1128)
T ss_dssp SSSCCCCSCTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHCTTCHHHHHHHHTTC
T ss_pred CCCCCCCcCHHhcCCHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 3468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCchhhhhHHHHhhcCCCCCCch----HHHHHHHhCCCCCCCHHHHH
Q psy17468 315 HNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKI----VNEMASAAGLLCTVDPALAT 390 (538)
Q Consensus 315 ~~~e~~l~r~~iiG~iL~FR~l~~eAl~~VL~~~~Pfl~s~I~~~~~~~~~~~~l~----v~~lA~aaGl~~~vD~~Lv~ 390 (538)
+++|+|++||||||+||+||+|+|||+++||++|+|||+|+|+++++|+|+++|++ |+|||++||++|||||+|++
T Consensus 898 ~~~d~~l~r~~~iG~iL~FR~ll~eAl~~Vl~~~~Pfl~s~i~~~~~~~~~~~~~k~~l~v~~lA~~aG~~~~vD~~L~~ 977 (1128)
T 3p8c_B 898 SSVDSVLKRMTIIGVILSFRSLAQEALRDVLSYHIPFLVSSIEDFKDHIPRETDMKVAMNVYELSSAAGLPCEIDPALVV 977 (1128)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC-----CCSSHHHHHHHHHHTTCCCSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhCCCcCcchhhhhHHHHHHhcCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999854 78999999999999999999
Q ss_pred HHhccCCC--CCchhhHHHHHHHHHHHHHhcccccCCccccccccccccchhhhHHHHHHHHHHHHhcccCCCCHHHHHH
Q psy17468 391 ALASDKTD--LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMK 468 (538)
Q Consensus 391 al~~~~~~--~~d~~y~~w~LL~vf~avslp~l~~~~~s~y~~~~~g~~NN~HCla~aIn~l~~a~f~l~g~~~Ie~~mk 468 (538)
+|++++++ +||+||++|||||||+|||||+++.|++|+|++++|||+||+||+|+|||+|++|+|+++ +++|+++||
T Consensus 978 al~~~~~~~~~~d~~~~~~~lLlv~~Avsl~~~~~~~~s~Y~~~l~g~~NN~HCla~ain~l~~a~fsl~-~~~i~~~mk 1056 (1128)
T 3p8c_B 978 ALSSQKSENISPEEEYKIACLLMVFVAVSLPTLASNVMSQYSPAIEGHCNNIHCLAKAINQIAAALFTIH-KGSIEDRLK 1056 (1128)
T ss_dssp HHTC------CHHHHHHHHHHHHHHHHHHGGGGGGCGGGCEETTTTEETTCGGGHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHhhccCCCCChHHHHHHHHHHHHHHHHhhhhhcCCCceeecccccccchHHHHHHHHHHHHHHHhccC-cccHHHHHH
Confidence 99999987 799999999999999999999999999999999999999999999999999999999999 689999999
Q ss_pred HHHHHHhhhhhccCCCCCCcccCCcchhHhhHHHHHhcCCCCchhhhhhhchHHHHHHHHHHhhhhccCC
Q psy17468 469 EFLALTSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQEHAM 538 (538)
Q Consensus 469 eFL~lASs~lL~l~~e~~k~~~k~r~sv~ilLdqiV~~SpfLt~d~LEscfPY~LlRnaY~~~y~~~~~~ 538 (538)
|||++||++|||+|||++|+.+|||+|+|||||||||+|||||||+||+||||+|||||||++|++++++
T Consensus 1057 eFl~lAS~~lLrl~~e~~k~~~k~~~sv~i~Ld~~ve~Sp~Lt~d~LE~cfPY~LlR~aY~~~y~~~~~~ 1126 (1128)
T 3p8c_B 1057 EFLALASSSLLKIGQETDKTTTRNRESVYLLLDMIVQESPFLTMDLLESCFPYVLLRNAYHAVYKQSVTS 1126 (1128)
T ss_dssp HHHHHHHHHHHHTTSCCCTTTTTTHHHHHHHHHHHHHHCTTCCHHHHHHHSCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhhccccccccccceeehhHHHHHhhCCCCCHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999764
No 2
>1evs_A Oncostatin M; 4-helix bundle, GP130 binding cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.1
Probab=76.75 E-value=0.39 Score=44.88 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=15.8
Q ss_pred ccccccccchhhhHHHHHH
Q psy17468 430 LASLEGHSNNIHCMASAIN 448 (538)
Q Consensus 430 ~~~~~g~~NN~HCla~aIn 448 (538)
++++-|+-|||||+|.-..
T Consensus 115 ~~ni~G~rNNi~CMaqLL~ 133 (187)
T 1evs_A 115 RPNILGLRNNIYCMAQLLD 133 (187)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred ccchhhhhhhHHHHHHHcC
Confidence 5788999999999987553
No 3
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=64.58 E-value=36 Score=29.13 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCCH-------HHHHHHHhhhhcHHHHHHHHH-------HHHHHHhHHHHHHHH
Q psy17468 275 HIASQVQELKKLVAANKEVLLLLRTHFDKP-------EIMKEQSKRLHNVENVLQRMT-------IIGVILNFQRIAQLA 340 (538)
Q Consensus 275 hia~qv~elkklv~~N~d~L~~lr~~f~~p-------~~m~~~lk~L~~~e~~l~r~~-------iiG~iL~FR~l~~eA 340 (538)
+++....+|.+ |..|.++|.++-++++-+ |.+.++..+.+.+---+.+++ .+|.+|...+-++.+
T Consensus 7 q~~k~~~el~~-v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~v 85 (103)
T 1wrd_A 7 QIGKLRSELEM-VSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNV 85 (103)
T ss_dssp THHHHHHHHHH-HHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHHH
Confidence 45666677765 788999999999998542 566788888888888888887 677888777666655
Q ss_pred HH
Q psy17468 341 LQ 342 (538)
Q Consensus 341 l~ 342 (538)
+.
T Consensus 86 l~ 87 (103)
T 1wrd_A 86 FL 87 (103)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=54.02 E-value=26 Score=41.97 Aligned_cols=101 Identities=20% Similarity=0.298 Sum_probs=72.0
Q ss_pred CHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHhcCC-------CHHHH---HHHHhhhh--
Q psy17468 249 DVNELRALADLIGPYGMKLLNETLMWHIASQVQE-LKKLVAANKEVLLLLRTHFD-------KPEIM---KEQSKRLH-- 315 (538)
Q Consensus 249 D~~ELrAL~eLiGPYG~k~L~e~L~~hia~qv~e-lkklv~~N~d~L~~lr~~f~-------~p~~m---~~~lk~L~-- 315 (538)
-+.-++|+++|+|+-|+-++-+.|+.|+-++++. |+-.|.+=++ .+-.... .+-.+ .+.++-+.
T Consensus 910 G~~H~~ai~rLlg~~~l~~vi~ell~~~~~~i~~~~~~yv~~l~~---~mPk~~klP~~dyGs~G~~~~y~~~L~~~~~y 986 (1253)
T 3p8c_A 910 GPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLME---VMPKICRLPRHEYGSPGILEFFHHQLKDIVEY 986 (1253)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH---HSCSBCCCCCGGGCHHHHHHHHHHHTHHHHSC
T ss_pred ChHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCchhhCCCCccCCchHHHHHHHHHHhhHhcC
Confidence 5688999999999999999999999999988865 6666544333 3332222 12233 44444433
Q ss_pred -cH-HHHHHHHHHHHHHHhHHHHHHHHHHHH----HhccCchh
Q psy17468 316 -NV-ENVLQRMTIIGVILNFQRIAQLALQEV----LESRVPFL 352 (538)
Q Consensus 316 -~~-e~~l~r~~iiG~iL~FR~l~~eAl~~V----L~~~~Pfl 352 (538)
++ ..|++-+-.||+++-|=.++-.||+.. +-.-+||+
T Consensus 987 ~dlk~ev~q~fReiGN~i~f~~lLd~aL~q~e~~~~~~aaPf~ 1029 (1253)
T 3p8c_A 987 AELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQ 1029 (1253)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHhhcccc
Confidence 44 589999999999999999999887753 23336664
No 5
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=52.98 E-value=1.3e+02 Score=28.40 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCC--------CHHHHHHHHhhhhcHHHHHHHHH--------HHHHHHh
Q psy17468 269 NETLMWHIASQVQELKKLVAANKEVLLLLRTHFD--------KPEIMKEQSKRLHNVENVLQRMT--------IIGVILN 332 (538)
Q Consensus 269 ~e~L~~hia~qv~elkklv~~N~d~L~~lr~~f~--------~p~~m~~~lk~L~~~e~~l~r~~--------iiG~iL~ 332 (538)
++.=++.++.++.+|.+ |..|.++|.+|-+++. +.|.|.++..+.+.+-.-+++++ .++.+|.
T Consensus 64 d~~r~e~~~k~~~eLe~-V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~ 142 (186)
T 1oxz_A 64 DQKRMEKISKRVNAIEE-VNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQ 142 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 35558999999999987 8899999999998873 34677888888888888888876 3455665
Q ss_pred HHHHHHHH
Q psy17468 333 FQRIAQLA 340 (538)
Q Consensus 333 FR~l~~eA 340 (538)
..+-++..
T Consensus 143 ~ND~Ln~v 150 (186)
T 1oxz_A 143 ANDNLTQV 150 (186)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 55544443
No 6
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=46.84 E-value=1.4e+02 Score=27.49 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCH--------HHHHHHHhhhhcHHHHHHHHH--------HHHHHHh
Q psy17468 269 NETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKP--------EIMKEQSKRLHNVENVLQRMT--------IIGVILN 332 (538)
Q Consensus 269 ~e~L~~hia~qv~elkklv~~N~d~L~~lr~~f~~p--------~~m~~~lk~L~~~e~~l~r~~--------iiG~iL~ 332 (538)
++.=+..++.++.+|.+ |..|.++|.++-+++..+ |.+.++..+.+.+-.-+++++ .++.+|.
T Consensus 48 d~~r~e~~~k~~seLe~-V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~ 126 (158)
T 1naf_A 48 DQKRMEKISKRVNAIEE-VNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQ 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 45558999999999987 688999999999987533 667788888888888888776 3556666
Q ss_pred HHHHHHHHH
Q psy17468 333 FQRIAQLAL 341 (538)
Q Consensus 333 FR~l~~eAl 341 (538)
..+-++..+
T Consensus 127 ~ND~Ln~vl 135 (158)
T 1naf_A 127 ANDNLTQVI 135 (158)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 555554443
No 7
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=45.36 E-value=1.6e+02 Score=26.52 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC--------HHHHHHHHhhhhcHHHHHHHHH--------HHHHHHh
Q psy17468 269 NETLMWHIASQVQELKKLVAANKEVLLLLRTHFDK--------PEIMKEQSKRLHNVENVLQRMT--------IIGVILN 332 (538)
Q Consensus 269 ~e~L~~hia~qv~elkklv~~N~d~L~~lr~~f~~--------p~~m~~~lk~L~~~e~~l~r~~--------iiG~iL~ 332 (538)
++.=+..++.++.+|.+ |..|.++|.++-+++.- .|.+.++..+.+.+-.-+++++ .++.+|.
T Consensus 39 d~~r~e~~~k~~~eLe~-v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~ 117 (140)
T 1o3x_A 39 DQKRMEKISKRVNAIEE-VNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQ 117 (140)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 45558999999999987 78999999999998853 3667788888888877777775 4566666
Q ss_pred HHHHHHHHH
Q psy17468 333 FQRIAQLAL 341 (538)
Q Consensus 333 FR~l~~eAl 341 (538)
..+-++..+
T Consensus 118 ~ND~ln~vl 126 (140)
T 1o3x_A 118 ANDNLTQVI 126 (140)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 665555443
No 8
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=26.20 E-value=3.5e+02 Score=25.99 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=40.8
Q ss_pred HHHHhHHHHHHHHHHHHHhccCchhhh--hHHHHhh-cCCC---CC-CchHHHHHHHhCCCCCC
Q psy17468 328 GVILNFQRIAQLALQEVLESRVPFLLN--SVQDFYQ-HSPV---GD-PKIVNEMASAAGLLCTV 384 (538)
Q Consensus 328 G~iL~FR~l~~eAl~~VL~~~~Pfl~s--~I~~~~~-~~~~---~~-~l~v~~lA~aaGl~~~v 384 (538)
+.+..+|.++..=++.==+.=.|||-. .++++++ ++.+ .. .+.+..||.+.|++..|
T Consensus 130 ~iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V 193 (234)
T 1tff_A 130 HIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQV 193 (234)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEE
Confidence 446667777666566656667899975 7888877 5532 22 27799999999999876
No 9
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=24.08 E-value=2.4e+02 Score=24.66 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=19.9
Q ss_pred CchhHHHHHHHhcCCceEEeechhhHhhHHH
Q psy17468 93 QEPVSKLWTAALENNWVIALFRDEVIYIHQY 123 (538)
Q Consensus 93 ~~~~~~lw~~aL~~~~vl~LfRdev~~iH~~ 123 (538)
.|..++||+.|++.||. -||.=.|=.+
T Consensus 6 EPkVq~LW~lA~~~NFT----~~ELeSlK~E 32 (109)
T 2fcw_A 6 EPRVIDLWDLAQSANLT----DKELEAFREE 32 (109)
T ss_dssp SHHHHHHHHHHHTSCCC----HHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCC----HHHHHHHHHH
Confidence 38889999999999985 4555444444
No 10
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=22.00 E-value=2e+02 Score=26.09 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHhhhhcHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy17468 274 WHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQ 342 (538)
Q Consensus 274 ~hia~qv~elkklv~~N~d~L~~lr~~f~~p~~m~~~lk~L~~~e~~l~r~~iiG~iL~FR~l~~eAl~ 342 (538)
..|--||.-|+++|.+.++ +.+++.||..+..-|++....=.-=..+.++.+|.+
T Consensus 59 kRIeGQvrGI~rMIEedr~--------------C~DIL~QlaAVrsAL~~v~~~ILe~Hl~~CV~~ai~ 113 (136)
T 4adz_A 59 RRIEGQIRGLQRMVDEDVY--------------CIDILTQVSASTKALQSFALQLLEEHLRHCVADAAL 113 (136)
T ss_dssp HHHHHHHHHHHHHHHTTCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888777655 577888888777777766443333344555555543
No 11
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=21.49 E-value=1.2e+02 Score=25.13 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=31.2
Q ss_pred chHHHHHHHhCCCCCCCHHHHHHHh-ccC-CC-CCchhhHHH
Q psy17468 369 KIVNEMASAAGLLCTVDPALATALA-SDK-TD-LDEDEHVLA 407 (538)
Q Consensus 369 l~v~~lA~aaGl~~~vD~~Lv~al~-~~~-~~-~~d~~y~~w 407 (538)
.++.++|...|++.--||.|.++|. ... ++ -|++-|+--
T Consensus 30 ~~I~~~A~e~~VPi~e~~~LAr~L~~~~~ig~~IP~ely~aV 71 (83)
T 3bzy_B 30 LQIIKLAELYDIPVIEDIPLARSLDKNIHKGQYITEDFFEPV 71 (83)
T ss_dssp HHHHHHHHHTTCCEEECHHHHHHHHHHCCTTCBCCGGGHHHH
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCccCHHHHHHH
Confidence 5599999999999999999999998 333 33 588877644
No 12
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=21.32 E-value=1e+02 Score=26.13 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=34.2
Q ss_pred chHHHHHHHhCCCCCCCHHHHHHHhc-cCCC--CCchhhHHHHHHHHHH
Q psy17468 369 KIVNEMASAAGLLCTVDPALATALAS-DKTD--LDEDEHVLACLLMVFV 414 (538)
Q Consensus 369 l~v~~lA~aaGl~~~vD~~Lv~al~~-~~~~--~~d~~y~~w~LL~vf~ 414 (538)
.++.++|...|++.-=||.|.++|.. ..-| -|++-|+.-.=++.|+
T Consensus 30 ~~I~e~A~e~gVPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 78 (93)
T 2vt1_B 30 LAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWL 78 (93)
T ss_dssp HHHHHHHHHTTCCEEECHHHHHHHHHHCCSSEECCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEECHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHH
Confidence 45999999999999999999999983 3333 6888776543333444
No 13
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=20.18 E-value=5.4e+02 Score=24.56 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=43.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhccCchhhh--hHHHHhh-cCCC---C-CCchHHHHHHHhCCCCCC
Q psy17468 327 IGVILNFQRIAQLALQEVLESRVPFLLN--SVQDFYQ-HSPV---G-DPKIVNEMASAAGLLCTV 384 (538)
Q Consensus 327 iG~iL~FR~l~~eAl~~VL~~~~Pfl~s--~I~~~~~-~~~~---~-~~l~v~~lA~aaGl~~~v 384 (538)
-..+..||.++..=++.==+.-.|||-. .++++++ .+-+ . +.+.+..||.+.|++..|
T Consensus 132 ~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V 196 (234)
T 2zfy_A 132 DYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQV 196 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEE
Confidence 3566778888777677767778899976 7888875 4532 2 227799999999999766
Done!