RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17468
(538 letters)
>gnl|CDD|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein. Expression
of this protein was found to be markedly reduced in
patients with Alzheimer's disease. It is involved in the
regulation of actin polymerisation in the brain as part
of a WAVE2 signalling complex.
Length = 1118
Score = 419 bits (1079), Expect = e-135
Identities = 181/301 (60%), Positives = 228/301 (75%), Gaps = 4/301 (1%)
Query: 240 IPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRT 299
+ FNAEEFSD++ELRAL +L+GPYGMK L+E+LMWHIASQV ELKKLV NK+VL+ LR+
Sbjct: 818 LGFNAEEFSDISELRALVELLGPYGMKFLSESLMWHIASQVNELKKLVVENKDVLVQLRS 877
Query: 300 HFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDF 359
FDKP+ M KRL + +NVL+RM IIGVIL+F+ +AQ AL+ VLES VPFL++S++D
Sbjct: 878 SFDKPDQMAALLKRLSDADNVLKRMIIIGVILSFRDLAQEALRAVLESHVPFLMSSIEDL 937
Query: 360 YQHSPVGDPK----IVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVA 415
+H P K + EMASAAG+ C VDPAL AL + K + E+++ +CLL+VFVA
Sbjct: 938 KEHVPEVTDKKVILRIFEMASAAGVPCDVDPALVNALLAQKGENSEEDYKNSCLLLVFVA 997
Query: 416 VCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTS 475
V +P LA + FY +EGHSNNIHC+A AIN I +ALFTL + ++E RMKEFLAL S
Sbjct: 998 VSLPTLAMWDTSFYNPEIEGHSNNIHCLAKAINAISAALFTLTAEANIESRMKEFLALAS 1057
Query: 476 SSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQE 535
SSLL LGQ+ D+ R+R+SVYLLL QIV+ESPFLTMD+LESCFPY L+RNAYH V K
Sbjct: 1058 SSLLDLGQETDKSRLRNRESVYLLLDQIVEESPFLTMDVLESCFPYVLLRNAYHQVYKAS 1117
Query: 536 H 536
Sbjct: 1118 L 1118
Score = 311 bits (798), Expect = 1e-94
Identities = 116/230 (50%), Positives = 160/230 (69%), Gaps = 1/230 (0%)
Query: 2 DYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPA 61
DY+ P+KKL EEF+PH+K + AL SL IY RN +A+Q RN+Q LSL+ P +L PA
Sbjct: 175 DYDPPLKKLHEEFVPHSKRISSALESLHPIYFRRNDTAEQWRNEQLLSLISAPPDILTPA 234
Query: 62 RTERMSCEYLSQESLDRWIIFGFMLCHQPLSQEP-VSKLWTAALENNWVIALFRDEVIYI 120
+++ M+CEYLS E ++RWI+FG+++CH L + + LW AL+ + + LFRDEV I
Sbjct: 235 QSDTMACEYLSVEVMERWILFGYLVCHGELLRVTSILDLWKLALQESLCLTLFRDEVFLI 294
Query: 121 HQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREKRKFLRTALKELGLLFSDQPGL 180
H+ Q +IKGY KR++++K+C A++ A HRE+R FLR+ALKEL L +DQPGL
Sbjct: 295 HKEYQLLLLSIKGYSKRIADIKECKEQALASAGALHRERRIFLRSALKELVLFLTDQPGL 354
Query: 181 LGPKALLIFIGLSYARDEVYWLLRHNDNPPVQKGKSKSAEDLVDRQLPEL 230
LGPKAL +F+ LS+ARDEV WLLRH N P + + K+ ED D +PEL
Sbjct: 355 LGPKALFVFMALSFARDEVLWLLRHAGNVPSRSSRGKTDEDFADPHIPEL 404
>gnl|CDD|152249 pfam11813, DUF3334, Protein of unknown function (DUF3334). This
family of proteins are functionally uncharacterized.
This family is only found in bacteria. Proteins in this
family are typically between 227 to 238 amino acids in
length.
Length = 227
Score = 29.6 bits (67), Expect = 3.5
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 237 EGAIPFNAEEFSDV-NEL--RALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEV 293
E AI ++E +V EL + + D G + L I +Q Q K++A NK+V
Sbjct: 90 ELAISHTSDEVGNVMGELMNQIVGDFTGKVR-----KELQTSI-TQNQ--PKMLAINKQV 141
Query: 294 LLLLRTHFDKPE 305
L + T+ D+P+
Sbjct: 142 TLSVDTNLDRPQ 153
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 29.6 bits (67), Expect = 4.3
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 360 YQHSPVGDPKIVNEMASAAGLLCTVDPALA 389
+QH PK+V + A LCTV PA A
Sbjct: 69 HQH-----PKVVAAIQEQAARLCTVAPAHA 93
>gnl|CDD|201193 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16. This family
includes small ribosomal subunit S9 from prokaryotes and
S16 from eukaryotes.
Length = 121
Score = 28.2 bits (64), Expect = 4.6
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 147 HAVSKAALEHREKRKFLRTALKELGLLFSD-------QPGLLGPKA 185
A+++A + + + LR LK+ GLL D + GL KA
Sbjct: 72 LAIARALVAYDPE---LRPELKKAGLLTRDPRRKERKKYGL--KKA 112
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 29.7 bits (67), Expect = 4.8
Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 276 IASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQR 335
I ++ELK+L A +EV L RT D + + E + L N+ L+++ +R
Sbjct: 152 INVALKELKELEAEIREVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKEK--QRLER 209
Query: 336 IAQL--------ALQEVLESR---VPFLLNSVQDFYQHSPVGDPKIVNEMASAAGLLCTV 384
+ +L AL++ L + + ++V+ + + E+ +A L +
Sbjct: 210 LRRLLPLLAERKALEQQLAALGEVIDLPPDAVERY--------EEARAELRAARRNLELL 261
Query: 385 DPALATALASDKTDLDEDEHVLAC 408
L AL ++ ++ DE +LA
Sbjct: 262 TERLE-ALQAELDEISLDEELLAQ 284
>gnl|CDD|182930 PRK11054, helD, DNA helicase IV; Provisional.
Length = 684
Score = 29.5 bits (67), Expect = 4.8
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 281 QELKKL---VAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTI 326
L KL ++ +LLL R H +P ++ + + R ++ + MTI
Sbjct: 548 ALLDKLSGYAKPDERILLLARYHHLRPALLDKAATRWPKLQ--IDFMTI 594
>gnl|CDD|233855 TIGR02410, carnitine_TMLD, trimethyllysine dioxygenase. Members of
this family with known function act as trimethyllysine
dioxygenase, an enzyme in the pathway for carnitine
biosynthesis from lysine. This enzyme is homologous to
gamma-butyrobetaine,2-oxoglutarate dioxygenase, which
catalyzes the last step in carnitine biosynthesis.
Members of this family appear to be eukaryotic only.
Length = 362
Score = 29.0 bits (65), Expect = 7.2
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 198 EVYWLLRHNDNPPVQKGKSKSAEDLVDRQ 226
+ WL+RH+ P +K L +R+
Sbjct: 63 KEDWLIRHSYEPKKEKNVKA--LILPNRK 89
>gnl|CDD|224819 COG1907, COG1907, Predicted archaeal sugar kinases [General
function prediction only].
Length = 312
Score = 28.5 bits (64), Expect = 8.3
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 274 WHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNF 333
W + E+++ V+ +EV + + E + E S R VL +M + V+
Sbjct: 163 WRFVLAIPEVERGVSGRREVDIFKKYCPVPLEEVGELSHR------VLMKM-MPAVVERD 215
Query: 334 QRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKIVNEMASAA 378
AL E+ E V+ Q V +IV+EM AA
Sbjct: 216 IESFGEALNEIQE-LGGKWFKKVEGGLQREDVK--EIVDEMVEAA 257
>gnl|CDD|110249 pfam01233, NMT, Myristoyl-CoA:protein N-myristoyltransferase,
N-terminal domain. The N and C-terminal domains of NMT
are structurally similar, each adopting an acyl-CoA
N-acyltransferase-like fold.
Length = 162
Score = 27.8 bits (62), Expect = 9.5
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 22/79 (27%)
Query: 274 WHIASQVQELKKLVAA-----------NKEVLLL----------LRTHFDKPEIMKEQSK 312
WH +V+ KLVA +K V ++ LR+ P ++KE ++
Sbjct: 78 WHCGVRVKSTGKLVAFISAIPATIRVRDKTVKMVEINFLCVHKKLRSKRLAPVLIKEITR 137
Query: 313 RLHNVENVLQRMTIIGVIL 331
R+ N+ + Q + G++L
Sbjct: 138 RV-NLTGIWQALYTAGIVL 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.398
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,662,025
Number of extensions: 2756530
Number of successful extensions: 2311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2308
Number of HSP's successfully gapped: 19
Length of query: 538
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 436
Effective length of database: 6,413,494
Effective search space: 2796283384
Effective search space used: 2796283384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.4 bits)