RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17468
(538 letters)
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 1128
Score = 359 bits (923), Expect = e-113
Identities = 180/309 (58%), Positives = 236/309 (76%), Gaps = 7/309 (2%)
Query: 232 MKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANK 291
+ E + FNAEE+SD++E+R+L++L+GPYGMK L+E+LMWHI+SQV ELKKLV N
Sbjct: 815 VNLPTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENV 874
Query: 292 EVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPF 351
+VL +RT FDKP+ M KRL +V++VL+RMTIIGVIL+F+ +AQ AL++VL +PF
Sbjct: 875 DVLTQMRTSFDKPDQMAALFKRLSSVDSVLKRMTIIGVILSFRSLAQEALRDVLSYHIPF 934
Query: 352 LLNSVQDFYQHSPVGDP----KIVNEMASAAGLLCTVDPALATALASDKTD--LDEDEHV 405
L++S++DF H P V E++SAAGL C +DPAL AL+S K++ E+E+
Sbjct: 935 LVSSIEDFKDHIPRETDMKVAMNVYELSSAAGLPCEIDPALVVALSSQKSENISPEEEYK 994
Query: 406 LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLED 465
+ACLLMVFVAV +P LA N Y ++EGH NNIHC+A AIN I +ALFT+ +G +ED
Sbjct: 995 IACLLMVFVAVSLPTLASNVMSQYSPAIEGHCNNIHCLAKAINQIAAALFTIH-KGSIED 1053
Query: 466 RMKEFLALTSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIR 525
R+KEFLAL SSSLL++GQ+ D+ +TR+R+SVYLLL IVQESPFLTMDLLESCFPY L+R
Sbjct: 1054 RLKEFLALASSSLLKIGQETDKTTTRNRESVYLLLDMIVQESPFLTMDLLESCFPYVLLR 1113
Query: 526 NAYHAVSKQ 534
NAYHAV KQ
Sbjct: 1114 NAYHAVYKQ 1122
Score = 270 bits (691), Expect = 6e-80
Identities = 120/231 (51%), Positives = 169/231 (73%), Gaps = 6/231 (2%)
Query: 1 MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKP 60
+DYE P+KK+ EEF+PH+K L AL+SL+ +Y RN+SADQ RN Q LSL+ P +L P
Sbjct: 183 VDYENPLKKMMEEFVPHSKSLSDALISLQMVYPRRNLSADQWRNAQLLSLISAPSTMLNP 242
Query: 61 ARTERMSCEYLSQESLDRWIIFGFMLCHQPLSQEPVS-KLWTAALENNWVIALFRDEVIY 119
A+++ M CEYLS +++++WIIFGF+LCH L+ + + LW AL+++ ++LFRDEV +
Sbjct: 243 AQSDTMPCEYLSLDAMEKWIIFGFILCHGILNTDATALNLWKLALQSSSCLSLFRDEVFH 302
Query: 120 IHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREKRKFLRTALKELGLLFSDQPG 179
IH+ + F I+GY KR++++++C AVS A HRE+RKFLR+ALKEL + SDQPG
Sbjct: 303 IHKAAEDLFVNIRGYNKRINDIRECKEAAVSHAGSMHRERRKFLRSALKELATVLSDQPG 362
Query: 180 LLGPKALLIFIGLSYARDEVYWLLRHNDNPPVQKGKSKSAEDLVDRQLPEL 230
LLGPKAL +F+ LS+ARDE+ WLLRH DN P KSA+D +D+ + EL
Sbjct: 363 LLGPKALFVFMALSFARDEIIWLLRHADNMP-----KKSADDFIDKHIAEL 408
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 8e-12
Identities = 95/600 (15%), Positives = 171/600 (28%), Gaps = 182/600 (30%)
Query: 1 MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKP 60
MD+E + + +L + + ++V D ++ +L
Sbjct: 7 MDFETGEHQYQ-----YKDILSVFEDAFVDNFDCKDVQ-DMPKS------------ILSK 48
Query: 61 ARTERMSCEYLSQESLDRWIIFGFMLCHQPLSQEPVSKLWTAALENN--WVIALFRDEVI 118
+ + + R +F L + +E V K L N ++++ + E
Sbjct: 49 EEIDHIIMSKDAVSGTLR--LFW-TLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTE-- 101
Query: 119 YIHQYIQGFFDTIKGYGKRVSEVKDCYS--HAVSKAALEHREKRKFLRTALKELGLLFSD 176
Q T Y + + Y+ +K + + LR AL EL
Sbjct: 102 ----QRQPSMMTRM-Y---IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------ 147
Query: 177 QP-------GLLGP-KALLIFIGLSYARDE---------VYWLLRHNDNPPVQKGKSKSA 219
+P G+LG K + L ++WL S
Sbjct: 148 RPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKIFWL---------NLKNCNSP 195
Query: 220 EDLVDRQLPELEMKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLN--ETLMWHIA 277
E + LEM L+ L I P + + I
Sbjct: 196 ETV-------LEM--------------------LQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 278 SQVQELKKLVAAN--KEVLLLLRTHFDKPEIMKE---QSK-----RLHNVENVLQRMTII 327
S EL++L+ + + LL+L + + K R V + L T
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 328 GVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKIVNEMASAAGLLCTVDP- 386
+ L+ + L EV + +L QD P+ E+ T +P
Sbjct: 288 HISLDHHSMT-LTPDEVKSLLLKYLDCRPQDL--------PR---EV-------LTTNPR 328
Query: 387 --ALATALASDKTD-LDEDEHVLACLLMVFVAVCIPKLARNE--ACFY-LASLEGHSNNI 440
++ D D +HV L + + L E F L+ ++
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-- 386
Query: 441 HCMASAINHIFSALFTLC---GQGDLEDRMKEFLALTSSSLLRLGQDPDEESTR-HRDSV 496
I + L D M L SL+ + P E + S+
Sbjct: 387 ---------IPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIP--SI 431
Query: 497 YLLLHQIVQESPFLTMDLLESCFPYALIRN-------------------AYHAVSKQEHA 537
YL L ++ L +++ Y + + +H + EH
Sbjct: 432 YLELKVKLENEYALHRSIVDH---YNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHP 487
Score = 41.8 bits (97), Expect = 6e-04
Identities = 45/277 (16%), Positives = 89/277 (32%), Gaps = 61/277 (22%)
Query: 275 HIASQVQELKKLVAANKEVLLLLRTHF-------DKPEIMK-----EQSKRLHNVENVLQ 322
H+ + E + K++L + F D ++ K E+ + ++ +
Sbjct: 6 HMDFETGEHQY---QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 323 RM-TIIGVILNFQ-RIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKIVNEMASAAGL 380
+ +L+ Q + Q ++EVL FL++ ++ + P ++ E
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDR--- 118
Query: 381 LCTVDPALATALASDKTDLDEDEHVLA---CLL----MVFVAVC----IPK--LARNEAC 427
L + A K ++ + L LL V + K +A + C
Sbjct: 119 LYNDNQVFA------KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LDVC 171
Query: 428 FYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTSSSLLRLGQDPDE 487
S + C IF C E ++ L L ++ +
Sbjct: 172 --------LSYKVQCKMD--FKIFWLNLKNC--NSPETVLEMLQKL----LYQIDPNWTS 215
Query: 488 ESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALI 524
S H ++ L +H I E L L + L+
Sbjct: 216 RS-DHSSNIKLRIHSIQAE---LRRLLKSKPYENCLL 248
Score = 39.1 bits (90), Expect = 0.004
Identities = 48/358 (13%), Positives = 107/358 (29%), Gaps = 115/358 (32%)
Query: 4 EVPMKKLSEE---FIPHAKLLFQALMS---LRAIYSYRNVSADQMRNDQKLSLVGNPGQL 57
+ + L E P + + +++V+ D++ + SL +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSL-----NV 365
Query: 58 LKPARTERMSCEYLSQESLDRWIIFGFMLCHQPLSQEPVSKLWTAALENNWVIALFRDEV 117
L+PA EY ++ DR +F + +S +W ++ +V
Sbjct: 366 LEPA-------EY--RKMFDRLSVF---PPSAHIPTILLSLIWFDVIK---------SDV 404
Query: 118 IYIHQYIQGFFDTIKGYGKRVSEVKDCY----SHAVSKAALEHR---EKRKFLRTA-LKE 169
+ + + + K + + Y ++ AL HR + +T +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDD 463
Query: 170 LGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLL-RHNDNPPVQKGKSKSAEDLVDRQLP 228
L + DQ Y Y + H L
Sbjct: 464 LIPPYLDQ----------------Y----FYSHIGHH---------------------LK 482
Query: 229 ELEMKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWH----IASQVQELK 284
+E E F F D L K+ +++ W+ I + +Q+LK
Sbjct: 483 NIEH---PERMTLFR-MVFLDFRFLEQ----------KIRHDSTAWNASGSILNTLQQLK 528
Query: 285 KLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQ 342
+ + + E+ ++ + + L ++ + + + ++AL
Sbjct: 529 FY-----------KPYICDNDPKYER--LVNAILDFLPKIEENLICSKYTDLLRIALM 573
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 4e-09
Identities = 74/474 (15%), Positives = 143/474 (30%), Gaps = 170/474 (35%)
Query: 85 MLCHQPLSQEPVSKLWTAALENNW-VIALF-------------RDEVIY------IHQYI 124
++ +P ++ S L+ A E N ++A+F RD +Y + I
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD--LYQTYHVLVGDLI 188
Query: 125 QGFFDTIKGYGKRVSEVKDCYSHAVS-KAALEHREKR---KFLRTALKELGLLFSDQPGL 180
+ +T+ + + + ++ ++ LE+ +L + S
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI------PIS----- 237
Query: 181 LGPKALLIFIGL----SYARDEVYWLLRHNDNPPVQKGKSKSAEDLVDRQLPELEMKFIA 236
P IG+ Y + KG + ++ LV IA
Sbjct: 238 -CP-----LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV-------TAVAIA 284
Query: 237 EGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLL 296
E + E F + +A+ T+++ I + E A L
Sbjct: 285 ETD---SWESFFV-SVRKAI--------------TVLFFIGVRCYE-----AYPNTSL-- 319
Query: 297 LRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLE---SRVPF-- 351
P I+++ L N E V M L+ + Q +Q+ + S +P
Sbjct: 320 ------PPSILEDS---LENNEGVPSPM------LSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 352 -----LLNSVQDFYQHSPV--GDPKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEH 404
L+N ++ V G P+ S L ++ L A A D
Sbjct: 365 QVEISLVNGAKNL-----VVSGPPQ------S----LYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 405 -----VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCG 459
+ F+ V P F HS H + A + I
Sbjct: 410 SERKLKFS---NRFLPVASP--------F-------HS---HLLVPASDLI--------- 439
Query: 460 QGDLEDRMKEFLALTSSSLLRL-------GQDPDEESTRHRDSVYLLLHQIVQE 506
+D +K ++ + +++ G D S + ++ I++
Sbjct: 440 ---NKDLVKNNVSFNAKD-IQIPVYDTFDGSDLRVLSGSISER---IVDCIIRL 486
Score = 55.8 bits (134), Expect = 3e-08
Identities = 54/370 (14%), Positives = 119/370 (32%), Gaps = 97/370 (26%)
Query: 226 QLPELEMKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKK 285
QL E +F +P E F+ +E A+L+G + + +++S V+ K
Sbjct: 32 QLQE---QFNK--ILPEPTEGFAADDEPTTPAELVGKF---------LGYVSSLVEPSK- 76
Query: 286 LVAANKEVLLLLRTHFDKPEIMKEQSKRLHNV------ENVLQRMTIIGVILNFQRIAQL 339
V +VL L T F+ + + +H + EN + +I N+ +
Sbjct: 77 -VGQFDQVLNLCLTEFEN-CYL--EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 340 ALQEVLESRVPFLLNSV------------------------QDFYQHSPVGDPKIVNEMA 375
A + + L +V +D YQ + + +
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH---VLVGDLIK 189
Query: 376 SAAGLLCTV--DPALATALASDKTD----LDEDEHVLACLLMVFVAVCIPKLARNEACFY 429
+A L + A + + + L+ + ++ + + P + + Y
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 430 LASLE--G--HSNNIHCMASAINH---IFSALFTLCGQGDLEDRMKEFLALTSSSL---- 478
+ + + G + A H + +A+ + D + F ++
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI--AETDSWE---SFFVSVRKAITVLF 304
Query: 479 ---LRLGQD--PDE--ESTRHRDSVYLLLHQIVQESPFL-----TMDLLESCFPYALIR- 525
+R + P+ + DS+ + SP L T + ++ +
Sbjct: 305 FIGVR-CYEAYPNTSLPPSILEDSLE---NNEGVPSPMLSISNLTQEQVQD-----YVNK 355
Query: 526 -NAYHAVSKQ 534
N++ KQ
Sbjct: 356 TNSHLPAGKQ 365
Score = 50.0 bits (119), Expect = 2e-06
Identities = 42/247 (17%), Positives = 73/247 (29%), Gaps = 98/247 (39%)
Query: 349 VP----FLLNSVQDFYQHS---PVGDPKIVNEMASAAGLLCTVDPA--LA-TALASDKTD 398
VP F+ + +Q+ + P +E + A L+ L + + +
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV-----GKFLGYVSSLVEPSK 76
Query: 399 LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAI----------- 447
+ + + VL L F E C+ LEG N+IH +A+ +
Sbjct: 77 VGQFDQVLNLCLTEF-----------ENCY----LEG--NDIHALAAKLLQENDTTLVKT 119
Query: 448 -------------------NHIFSALFTLC------------GQGDLEDRMKE------- 469
SALF GQG+ +D +E
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 470 -------FLALTSSSLLRLGQDPDEESTRHRDSVYLL--LHQIVQESPFLTMDLLESC-- 518
+ ++ +L L + + + +L L +P D L S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN-PSNTP--DKDYLLSIPI 236
Query: 519 -FPYALI 524
P LI
Sbjct: 237 SCP--LI 241
Score = 40.0 bits (93), Expect = 0.002
Identities = 65/389 (16%), Positives = 107/389 (27%), Gaps = 157/389 (40%)
Query: 4 EVPM-KKLSEEFIPHAKLLF-QALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPA 61
E M L + A+ ++ +A + Y + D + N+ + G+ K
Sbjct: 1628 EQGMGMDLYKTS-KAAQDVWNRADNHFKDTYGFS--ILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 62 R--TERMSCEYLSQESLDRWIIFGFMLCHQPLSQEPVSKLWTAALENNWVIALFR--DEV 117
R M E + L IF E + FR +
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIF-------KEINEHSTSY------------TFRSEKGL 1725
Query: 118 IYIHQYIQ-GFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREKRKFLRTALKELGLLFSD 176
+ Q+ Q + KAA E LK GL+ +D
Sbjct: 1726 LSATQFTQPALT-------------------LMEKAAFE----------DLKSKGLIPAD 1756
Query: 177 QPGLLGPKALLIFIGLS---YARDEVYWLLRHNDNPPVQKGKSKSAEDLVDRQLPELEMK 233
F G S Y +A L
Sbjct: 1757 A----------TFAGHSLGEY-----------------------AA--LAS--------- 1772
Query: 234 FIAEGAIPFNAEEFSDVNELRALA-------DLIG--PYGMKLLNETLMWHIASQVQE-L 283
+A + E +V R + D +G YGM +N + AS QE L
Sbjct: 1773 -LA-DVMSI--ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV--AASFSQEAL 1826
Query: 284 KKLVAANKEVLLLLRTHFDKPEIMKEQSKRL----HNVENVLQRMTIIG----------V 329
+ +V + K + +NVEN Q +
Sbjct: 1827 QYVVE----------------RVGKRTGWLVEIVNYNVENQ-Q--YVAAGDLRALDTVTN 1867
Query: 330 ILNFQRIAQLALQEVLESRVPFLLNSVQD 358
+LNF ++ ++ + E+ +S L V+
Sbjct: 1868 VLNFIKLQKIDIIELQKS---LSLEEVEG 1893
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 31.8 bits (73), Expect = 0.48
Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 62 RTERMSCEYLSQESLDRWIIF--------GFMLCHQPLSQEPVSKLWTAALENNWVIALF 113
R+ + + +D +I G +L +Q +Q + ++ + ++
Sbjct: 47 RSMGTIQDDVLSLGVDGYIAGGGNYIQYHGELLYNQSFNQRLIKEVVCLLKKREVAFSIE 106
Query: 114 RDEVIYIHQYIQGFFDTIKGYGKRVSEVK 142
E ++++Q + F+T+ S +
Sbjct: 107 SQEKVFMNQKAKEIFETMNQLKGTNSCIN 135
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT
structure initiative; HET: MSE; 1.80A {Pseudomonas
aeruginosa PAO1} SCOP: c.1.15.7
Length = 264
Score = 30.0 bits (67), Expect = 1.8
Identities = 12/61 (19%), Positives = 25/61 (40%)
Query: 242 FNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHF 301
+ + +L AL + +G++LL E +++ L++ + L L F
Sbjct: 103 VSLGLLPEQPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLAERQQLDLAMTF 162
Query: 302 D 302
D
Sbjct: 163 D 163
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 30.0 bits (67), Expect = 1.9
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 2/134 (1%)
Query: 247 FSDVNELRALADLIGPY--GMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKP 304
S EL LAD +GP +K + L ++EL L ++ ++ R D
Sbjct: 92 VSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIG 151
Query: 305 EIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSP 364
+K+Q + + V+ + L + R L+ + +
Sbjct: 152 NTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMSSTGSLAT 211
Query: 365 VGDPKIVNEMASAA 378
+ MA
Sbjct: 212 GDYTRAAVRMAEEH 225
>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel,
unusual catalysis, disease mutati glycosyltransferase,
lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo
sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A*
3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A*
3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A*
3l0n_A* ...
Length = 260
Score = 29.6 bits (66), Expect = 2.7
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 247 FSDVNELRALADLIGPY--GMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKP 304
S EL LAD +GP +K + L ++EL L ++ ++ R D
Sbjct: 40 VSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFENRKFADIG 99
Query: 305 EIMKEQSKRLHNVENVLQRMTII 327
+K+Q + +
Sbjct: 100 NTVKKQYEGGIFKIASWADLVNA 122
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 29.4 bits (67), Expect = 2.9
Identities = 10/95 (10%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 86 LCHQPLSQEPVSKLWTAALENNWVIALFRDEVIYI---HQYIQGFFDTIKGYGKRVSEVK 142
+ + + K A E ++ +AL +E +++ ++ ++ V +++
Sbjct: 87 IRKVAIPAQDFRKSMELAREFDFAVALELNEGVFVNRLTPTVEQIAGIVEHPVPPVVDIE 146
Query: 143 DCYS-HAVSKA-ALEHREKRKFLRTALKELGLLFS 175
+ + + E + + L L
Sbjct: 147 EMFERKECCQLCFYFDEEAEQKVMPLLSGLSATRW 181
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 29.3 bits (65), Expect = 3.1
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 247 FSDVNELRALADLIGPY--GMKLLNETLM-WHIASQVQELKKLVAANKEVLLLLRTHFDK 303
EL L + +GP +K + L + + V+ LK L A +L R D
Sbjct: 38 VRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRRFADI 97
Query: 304 PEIMKEQSKRLHNVENVLQRMTII 327
+K Q +T
Sbjct: 98 GNTVKLQYSAGVYRIAEWADITNA 121
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.2
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 30/50 (60%)
Query: 342 QEV--LESRVPFLLNSVQDFYQHSPVGDPKIVNEMASAAGLLCTVDPALA 389
Q + L++ + Y + D SA PALA
Sbjct: 20 QALKKLQASL--------KLY--AD--D--------SA--------PALA 41
Score = 28.0 bits (61), Expect = 4.8
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 25/50 (50%)
Query: 225 RQLPELE--MKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETL 272
+ L +L+ +K A+ + P ALA + T+
Sbjct: 20 QALKKLQASLKLYADDSAP-------------ALA----------IKATM 46
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 29.0 bits (66), Expect = 3.3
Identities = 7/73 (9%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 86 LCHQPLSQEPVSKLWTAALENNWVIALFRDEVIYI----HQYIQGFFDTIKGYGKRVSEV 141
+ + QE V + + + I + + F+D +
Sbjct: 80 IYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEMVKKIFYDFLHVNVIPTVSF 139
Query: 142 KDCYSHAVSKAAL 154
++ + V +
Sbjct: 140 EEASNKEVIQMTP 152
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 29.4 bits (66), Expect = 3.6
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 366 GDPKIVNEMASAAGL--LCTVDPALATALASDKTDLDEDEHVLA 407
DP+I++ + A GL L V +K L++D VL
Sbjct: 330 NDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLV 373
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 29.0 bits (66), Expect = 3.8
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 86 LCHQPLSQEPVSKLWTAALENNWVIALFRDEVIYI----HQYIQGFFDTIK 132
L QPL +E V L A +N + E + H +I ++K
Sbjct: 77 LYKQPLRREKVRALTEEAHKNGHPLVFMDAEKMRASIGDHPHIHVSMASLK 127
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 29.0 bits (66), Expect = 4.1
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 13/59 (22%)
Query: 360 YQHSPVGDPKIVNEMASA---AGLLCT----VDPALATALASDKTDL-----DEDEHVL 406
+ + + M A G + + AL A+AS K L D D V
Sbjct: 495 ISCTRLTRGRYD-MMMEAFGGKGYVANTPAELKAALEEAVASGKPCLINAMIDPDAGVE 552
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate
binding module, xylan degradation; HET: XYP; 1.85A
{Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB:
1us3_A
Length = 530
Score = 29.2 bits (65), Expect = 4.5
Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 228 PELEMKFIA----EGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQEL 283
MK EG FN F++ + A M + L+WH QV
Sbjct: 210 AGNIMKMSYMQPTEGN--FN---FTNADAFVDWATE---NNMTVHGHALVWHSDYQVPNF 261
Query: 284 KKLVAANKEVLL-LLRTHFDK 303
K A + E L L TH
Sbjct: 262 MKNWAGSAEDFLAALDTHITT 282
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 28.7 bits (65), Expect = 4.7
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 156 HREKRKFLRTALKELGL-LFSDQPGLLGPKALLIFIGLSYARDEVYWLLRHN 206
H +R L+ LGL + + +P + + ++ + + +
Sbjct: 271 HTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKVADPQKVLAGTVNEG 322
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia
coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A*
1bkn_A 1nhj_A* 1b62_A*
Length = 333
Score = 28.2 bits (64), Expect = 7.3
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 13/86 (15%)
Query: 160 RKFLRTALKELGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLLRHNDNPPVQKGKSKSA 219
RKFLRT E + + I ++ AR +V L HN Q
Sbjct: 160 RKFLRTEKTEFNHI-DE-----------IIRRIALARFDVTINLSHNGKIVRQYRAVPEG 207
Query: 220 EDLVDRQLPELEMKFIAEGAIPFNAE 245
R F E A+ +
Sbjct: 208 GQKERRLGAICGTAF-LEQALAIEWQ 232
>3nts_A VSDC; mono-ADP ribosyltransferase toxin, transferase; 3.40A
{Aeromonas hydrophila}
Length = 241
Score = 27.9 bits (61), Expect = 8.4
Identities = 5/47 (10%), Positives = 9/47 (19%)
Query: 88 HQPLSQEPVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFDTIKGY 134
+ S K W + Y + + Y
Sbjct: 17 YFQGSHMVAVKGEGKKPAKKWATVEISKADEALRYYSAQGYTLLNNY 63
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 28.3 bits (64), Expect = 8.7
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 16/63 (25%)
Query: 359 FYQ---HSPVGDPKIVNEMASA---AGLLCT----VDPALATALASDKTDL-----DEDE 403
YQ G A + G ++P L A+ D + D +
Sbjct: 487 KYQRLSGVEFGPMDFK-AYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIPVDYRD 545
Query: 404 HVL 406
+ L
Sbjct: 546 NPL 548
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 28.0 bits (63), Expect = 9.4
Identities = 20/161 (12%), Positives = 44/161 (27%), Gaps = 36/161 (22%)
Query: 145 YSHAVSKAALEHREKRKFLRTALKELGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLL- 203
+ + + ++K LR + E + ++ A DE+ WL
Sbjct: 167 LTLGLDYTGISWKDKVADLRLKMAERNV-----------MWFVVT-----ALDEIAWLFN 210
Query: 204 -RHNDNP--PVQKG--------------KSKSAEDLVDRQLPELEMKFIAEGAIPFNAEE 246
R +D PV + V L +
Sbjct: 211 LRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKS 270
Query: 247 FSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLV 287
EL+AL + P +++ + ++ + + +
Sbjct: 271 ILS--ELKALCADLSPREKVWVSDKASYAVSETIPKDHRCC 309
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 27.7 bits (62), Expect = 9.7
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 420 KLARNEACFYLASLEGHSNNIHCMASAINHIFSA-----LFTLCGQGDLEDRMKEFLA 472
+ A+ EA H N + +A + + L +G L + ++
Sbjct: 71 EEAQREAD-MHRLF-NHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKD 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.398
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,070,316
Number of extensions: 489043
Number of successful extensions: 1229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 37
Length of query: 538
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 440
Effective length of database: 3,965,535
Effective search space: 1744835400
Effective search space used: 1744835400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.1 bits)