RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17468
         (538 letters)



>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit
           beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 134

 Score = 27.3 bits (61), Expect = 2.7
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 249 DVNELRALADLIGPYGMKLLNET------LMWHIASQVQELKKLVAANKEVL 294
            +  +R + D+   Y    L  T       M    + ++ LK+ +A+ K   
Sbjct: 73  SITHIREMCDIADKYCGGHLRFTTRNNVEFMVADEASLKALKEDLASRKFDG 124


>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 287

 Score = 27.6 bits (59), Expect = 3.8
 Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 6/27 (22%)

Query: 430 LASLEGHSNNIHCMASAINHIFSALFT 456
           L ++ GH+  I  +        + L +
Sbjct: 6   LKTISGHNKGITALT------VNPLIS 26


>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
           (Arabidopsis thaliana), peroxidase N [TaxId: 3702]}
          Length = 300

 Score = 27.3 bits (60), Expect = 4.7
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 160 RKFLRTALKELGLLFSDQPGLLGPKALLIFIGL--SYARDEVYW 201
             + +  L+  GLL SDQ       A+     L  +Y+R +  +
Sbjct: 226 NNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLF 269


>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
           [TaxId: 44689]}
          Length = 306

 Score = 27.1 bits (59), Expect = 6.1
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 222 LVDRQLPELEMKFIAEGAIPFNAEEFSDVNELRALADLIG-PYGMKLLNETLMWHIASQV 280
           +++R   ++  K     ++      F +    +++A+  G  Y  K LN+ LM+HI   +
Sbjct: 235 VINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTL 294

Query: 281 QELKKLV 287
            +LK  V
Sbjct: 295 PDLKVKV 301


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 26.9 bits (59), Expect = 7.6
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 280 VQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQ 338
           +  +   +    E   +LR + D         +RL  V   L++  +       Q + +
Sbjct: 1   INPVNNRIQDLTERSDVLRGYLDYDAK----KERLEEVNAELEQPDVWNEPERAQALGK 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,925,734
Number of extensions: 88643
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 12
Length of query: 538
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 448
Effective length of database: 1,171,896
Effective search space: 525009408
Effective search space used: 525009408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)