BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1747
(68 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLK 51
+ VI G+TG GKS+L I++A+KFNGE+I++DSMQ K
Sbjct: 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYK 40
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
+ VI+G T +GK++L IE+AKKFNGEIIS DS Q
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSXQ 42
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With
Atp
Length = 339
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFL 53
K + V++G+TGTGKS+L I++A F E+I++D MQ K L
Sbjct: 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGL 80
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans,
Northeast Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
K + I+G T GK+K + +AK+ NGE+IS DS Q
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVXLAKRLNGEVISGDSXQ 38
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 18 ILGSTGTGKSKLGIEIAKKFNGEIISADS 46
++G T +GK+ L IE+ K E+IS DS
Sbjct: 15 LMGPTASGKTALAIELRKILPVELISVDS 43
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45
I+V++G +G+GKS + E+A + + + D
Sbjct: 10 IYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45
PIF++ G+ G GK+ +G E+A+ E + D
Sbjct: 4 PIFMV-GARGCGKTTVGRELARALGYEFVDTD 34
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46
P ++G T GK+ L + +A E+IS DS
Sbjct: 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38
>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
I+V+ G +G+GKS + E+A + + + D +
Sbjct: 10 IYVLXGVSGSGKSAVASEVAHQLHAAFLDGDFLH 43
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe)
Length = 316
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 18 ILGSTGTGKSKLGIEIAKKFNGEIISADS 46
+ G T +GK+ L IE+ K E+IS DS
Sbjct: 15 LXGPTASGKTALAIELRKILPVELISVDS 43
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN-GEIISADSMQGL 50
+K+ + ++ + V++GS+G+GKS K F E+IS+D +GL
Sbjct: 2 MKLTIPELSLVVLIGSSGSGKSTFA---KKHFKPTEVISSDFCRGL 44
>pdb|4GP7|A Chain A, Polynucleotide Kinase
pdb|4GP7|B Chain B, Polynucleotide Kinase
Length = 171
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN-GEIISADSMQGL 50
K+ + ++ + V++GS+G+GKS K F E+IS+D +GL
Sbjct: 3 KLTIPELSLVVLIGSSGSGKSTFA---KKHFKPTEVISSDFCRGL 44
>pdb|2JAS|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|C Chain C, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|D Chain D, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|E Chain E, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|F Chain F, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
Length = 206
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 18 ILGSTGTGKSKLGIEIAKKFNGEI 41
I G+ G GKS + EI+KK EI
Sbjct: 6 IFGTVGAGKSTISAEISKKLGYEI 29
>pdb|2JAQ|A Chain A, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAQ|B Chain B, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAT|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
pdb|2JAT|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
Length = 205
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 18 ILGSTGTGKSKLGIEIAKKFNGEI 41
I G+ G GKS + EI+KK EI
Sbjct: 5 IFGTVGAGKSTISAEISKKLGYEI 28
>pdb|3QYF|A Chain A, Crystal Structure Of The Crispr-Associated Protein Sso1393
From Sulfolobus Solfataricus
pdb|3QYF|B Chain B, Crystal Structure Of The Crispr-Associated Protein Sso1393
From Sulfolobus Solfataricus
Length = 324
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 3 SSFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37
S+F K+ +K I+V L ST T S+L E+ + +
Sbjct: 81 STFEKLKHNKSEIYVFLYSTNTSNSQLAGEVIRDY 115
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 18 ILGSTGTGKSKLGIEIAKKF------NGEIISADSMQGLKFLVECRVKLELLRLKPD 68
I+G+ G+GK + I K F +G+++ + ++G + V + ++ +L PD
Sbjct: 11 IMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPD 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,718,481
Number of Sequences: 62578
Number of extensions: 54591
Number of successful extensions: 371
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 26
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)