Query psy1747
Match_columns 68
No_of_seqs 177 out of 1379
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:21:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02165 adenylate isopentenyl 99.3 6.7E-12 1.5E-16 82.6 4.5 50 11-60 41-90 (334)
2 COG1120 FepC ABC-type cobalami 99.3 3.3E-12 7.2E-17 81.7 2.9 35 4-38 19-53 (258)
3 PLN02748 tRNA dimethylallyltra 99.2 1.6E-11 3.5E-16 83.7 4.6 51 11-61 20-70 (468)
4 PRK14729 miaA tRNA delta(2)-is 99.2 2.6E-11 5.6E-16 78.9 4.7 51 11-62 2-52 (300)
5 PF13207 AAA_17: AAA domain; P 99.2 2.8E-11 6.1E-16 68.2 4.1 32 15-46 1-32 (121)
6 PRK00091 miaA tRNA delta(2)-is 99.2 3E-11 6.4E-16 78.8 4.7 50 12-61 3-52 (307)
7 COG4619 ABC-type uncharacteriz 99.2 1.9E-11 4.1E-16 75.1 2.8 33 4-36 20-52 (223)
8 COG0324 MiaA tRNA delta(2)-iso 99.1 4.4E-11 9.6E-16 78.1 4.0 50 13-62 3-52 (308)
9 COG1116 TauB ABC-type nitrate/ 99.1 6.4E-11 1.4E-15 75.3 3.6 32 4-35 20-51 (248)
10 PRK08118 topology modulation p 99.1 9.3E-11 2E-15 70.5 4.0 37 14-50 2-38 (167)
11 PLN02840 tRNA dimethylallyltra 99.1 9E-11 1.9E-15 79.3 4.2 51 11-61 19-69 (421)
12 TIGR00174 miaA tRNA isopenteny 99.1 8E-11 1.7E-15 76.3 3.8 48 15-62 1-48 (287)
13 COG1125 OpuBA ABC-type proline 99.1 1.2E-10 2.6E-15 75.1 3.8 60 4-63 18-87 (309)
14 PRK07261 topology modulation p 99.1 2.2E-10 4.7E-15 69.0 4.3 37 14-50 1-37 (171)
15 COG1131 CcmA ABC-type multidru 99.1 1.5E-10 3.2E-15 74.9 3.8 34 4-37 22-55 (293)
16 COG3842 PotA ABC-type spermidi 99.1 1.3E-10 2.9E-15 77.0 3.5 32 4-35 22-53 (352)
17 TIGR01166 cbiO cobalt transpor 99.1 1.5E-10 3.3E-15 70.0 3.5 33 4-36 9-41 (190)
18 COG1117 PstB ABC-type phosphat 99.1 6.5E-11 1.4E-15 74.6 1.8 33 5-37 25-57 (253)
19 COG1126 GlnQ ABC-type polar am 99.1 1.7E-10 3.6E-15 72.7 3.7 31 4-34 19-49 (240)
20 PRK00131 aroK shikimate kinase 99.1 3E-10 6.5E-15 67.0 4.6 38 10-47 1-38 (175)
21 cd03238 ABC_UvrA The excision 99.1 1.6E-10 3.4E-15 70.2 3.4 31 4-34 12-42 (176)
22 COG1124 DppF ABC-type dipeptid 99.1 1.5E-10 3.3E-15 73.6 3.5 32 4-35 24-55 (252)
23 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.1 1.5E-10 3.4E-15 71.1 3.4 34 4-37 21-54 (218)
24 PRK06217 hypothetical protein; 99.1 2.6E-10 5.6E-15 68.9 4.3 37 14-50 2-38 (183)
25 COG1136 SalX ABC-type antimicr 99.1 1.7E-10 3.7E-15 72.7 3.6 32 4-35 22-53 (226)
26 PF00005 ABC_tran: ABC transpo 99.0 1.3E-10 2.8E-15 66.7 2.7 34 4-37 2-35 (137)
27 cd03225 ABC_cobalt_CbiO_domain 99.0 1.8E-10 3.8E-15 70.6 3.4 34 4-37 18-51 (211)
28 PF01745 IPT: Isopentenyl tran 99.0 4.5E-10 9.8E-15 70.6 5.2 52 14-65 2-53 (233)
29 cd03261 ABC_Org_Solvent_Resist 99.0 1.8E-10 3.9E-15 71.7 3.4 34 4-37 17-50 (235)
30 COG3839 MalK ABC-type sugar tr 99.0 1.8E-10 3.9E-15 76.0 3.5 31 5-35 21-51 (338)
31 TIGR00960 3a0501s02 Type II (G 99.0 2E-10 4.3E-15 70.6 3.4 34 4-37 20-53 (216)
32 TIGR02673 FtsE cell division A 99.0 2.2E-10 4.7E-15 70.3 3.5 33 4-36 19-51 (214)
33 cd03259 ABC_Carb_Solutes_like 99.0 2.4E-10 5.1E-15 70.2 3.5 33 4-36 17-49 (213)
34 cd03257 ABC_NikE_OppD_transpor 99.0 2.4E-10 5.3E-15 70.5 3.6 33 4-36 22-54 (228)
35 cd03226 ABC_cobalt_CbiO_domain 99.0 2.3E-10 4.9E-15 70.0 3.4 33 4-36 17-49 (205)
36 PRK15177 Vi polysaccharide exp 99.0 2.3E-10 5.1E-15 70.7 3.4 33 4-36 4-36 (213)
37 TIGR02315 ABC_phnC phosphonate 99.0 2.5E-10 5.5E-15 71.1 3.6 33 4-36 19-51 (243)
38 cd03269 ABC_putative_ATPase Th 99.0 2.4E-10 5.2E-15 70.0 3.4 33 4-36 17-49 (210)
39 cd03263 ABC_subfamily_A The AB 99.0 2.6E-10 5.5E-15 70.2 3.5 33 4-36 19-51 (220)
40 cd03260 ABC_PstB_phosphate_tra 99.0 2.7E-10 6E-15 70.4 3.6 34 4-37 17-50 (227)
41 TIGR03608 L_ocin_972_ABC putat 99.0 2.6E-10 5.6E-15 69.5 3.4 34 4-37 15-48 (206)
42 cd03258 ABC_MetN_methionine_tr 99.0 2.8E-10 6.1E-15 70.6 3.6 34 4-37 22-55 (233)
43 cd03262 ABC_HisP_GlnQ_permease 99.0 3E-10 6.5E-15 69.6 3.6 33 4-36 17-49 (213)
44 cd03293 ABC_NrtD_SsuB_transpor 99.0 2.5E-10 5.3E-15 70.5 3.3 33 4-36 21-53 (220)
45 TIGR02211 LolD_lipo_ex lipopro 99.0 2.8E-10 6.1E-15 70.1 3.4 33 4-36 22-54 (221)
46 cd03235 ABC_Metallic_Cations A 99.0 2.6E-10 5.7E-15 70.0 3.3 33 4-36 16-48 (213)
47 cd03256 ABC_PhnC_transporter A 99.0 3E-10 6.4E-15 70.7 3.5 33 4-36 18-50 (241)
48 cd03292 ABC_FtsE_transporter F 99.0 2.8E-10 6.1E-15 69.7 3.4 34 4-37 18-51 (214)
49 TIGR02868 CydC thiol reductant 99.0 1.4E-10 2.9E-15 79.2 2.2 34 4-37 352-385 (529)
50 COG0563 Adk Adenylate kinase a 99.0 3.8E-10 8.2E-15 68.7 3.9 34 14-47 1-34 (178)
51 cd03224 ABC_TM1139_LivF_branch 99.0 2.6E-10 5.6E-15 70.2 3.1 33 4-36 17-49 (222)
52 PRK03839 putative kinase; Prov 99.0 5.4E-10 1.2E-14 67.1 4.5 34 15-48 2-35 (180)
53 cd03219 ABC_Mj1267_LivG_branch 99.0 2.9E-10 6.2E-15 70.6 3.3 33 4-36 17-49 (236)
54 cd03301 ABC_MalK_N The N-termi 99.0 3.3E-10 7E-15 69.5 3.5 34 4-37 17-50 (213)
55 cd03265 ABC_DrrA DrrA is the A 99.0 3.4E-10 7.3E-15 69.8 3.6 33 4-36 17-49 (220)
56 cd03218 ABC_YhbG The ABC trans 99.0 3.4E-10 7.4E-15 70.2 3.6 33 4-36 17-49 (232)
57 PRK10584 putative ABC transpor 99.0 3.3E-10 7.2E-15 70.1 3.5 34 4-37 27-60 (228)
58 TIGR01978 sufC FeS assembly AT 99.0 3.4E-10 7.4E-15 70.5 3.5 33 4-36 17-49 (243)
59 TIGR03410 urea_trans_UrtE urea 99.0 3.4E-10 7.4E-15 70.2 3.5 34 4-37 17-50 (230)
60 COG4608 AppF ABC-type oligopep 99.0 2.9E-10 6.3E-15 73.0 3.1 34 4-37 30-63 (268)
61 PRK11629 lolD lipoprotein tran 99.0 3.4E-10 7.3E-15 70.4 3.4 33 4-36 26-58 (233)
62 COG1121 ZnuC ABC-type Mn/Zn tr 99.0 3.3E-10 7.2E-15 72.4 3.3 32 4-35 21-52 (254)
63 cd03229 ABC_Class3 This class 99.0 3.9E-10 8.4E-15 67.8 3.4 33 4-36 17-49 (178)
64 COG0396 sufC Cysteine desulfur 99.0 3.3E-10 7.1E-15 71.8 3.1 33 4-36 21-53 (251)
65 PRK11248 tauB taurine transpor 99.0 3.8E-10 8.2E-15 71.4 3.4 33 4-36 18-50 (255)
66 cd03296 ABC_CysA_sulfate_impor 99.0 3.9E-10 8.4E-15 70.4 3.4 33 4-36 19-51 (239)
67 PRK13539 cytochrome c biogenes 99.0 4.2E-10 9E-15 69.1 3.5 33 4-36 19-51 (207)
68 PRK10247 putative ABC transpor 99.0 4.2E-10 9.1E-15 69.8 3.5 33 4-36 24-56 (225)
69 TIGR03864 PQQ_ABC_ATP ABC tran 99.0 4E-10 8.7E-15 70.2 3.5 33 4-36 18-50 (236)
70 PRK10908 cell division protein 99.0 4.3E-10 9.3E-15 69.5 3.5 34 4-37 19-52 (222)
71 PRK14242 phosphate transporter 99.0 4.4E-10 9.5E-15 70.6 3.4 33 4-36 23-55 (253)
72 TIGR03797 NHPM_micro_ABC2 NHPM 99.0 3E-10 6.6E-15 79.6 3.0 34 4-37 470-503 (686)
73 TIGR01189 ccmA heme ABC export 99.0 4.6E-10 1E-14 68.4 3.4 33 4-36 17-49 (198)
74 cd03230 ABC_DR_subfamily_A Thi 99.0 4.6E-10 1E-14 67.2 3.4 33 4-36 17-49 (173)
75 TIGR01188 drrA daunorubicin re 99.0 4.4E-10 9.4E-15 72.6 3.5 34 4-37 10-43 (302)
76 PRK13538 cytochrome c biogenes 99.0 5E-10 1.1E-14 68.6 3.5 33 4-36 18-50 (204)
77 PRK11174 cysteine/glutathione 99.0 3.2E-10 6.9E-15 78.2 2.9 34 4-37 367-400 (588)
78 PRK10895 lipopolysaccharide AB 99.0 4.8E-10 1E-14 70.0 3.4 33 4-36 20-52 (241)
79 cd03266 ABC_NatA_sodium_export 99.0 5E-10 1.1E-14 68.9 3.5 33 4-36 22-54 (218)
80 PRK11264 putative amino-acid A 99.0 5.3E-10 1.2E-14 70.0 3.6 34 4-37 20-53 (250)
81 cd03268 ABC_BcrA_bacitracin_re 99.0 5.1E-10 1.1E-14 68.5 3.4 33 4-36 17-49 (208)
82 PRK13540 cytochrome c biogenes 99.0 5.3E-10 1.2E-14 68.2 3.5 34 4-37 18-51 (200)
83 PRK14530 adenylate kinase; Pro 99.0 1E-09 2.2E-14 67.8 4.7 35 13-47 3-37 (215)
84 PRK14247 phosphate ABC transpo 99.0 5.4E-10 1.2E-14 70.1 3.5 34 4-37 20-53 (250)
85 KOG0058|consensus 99.0 4.6E-10 9.9E-15 79.4 3.5 60 4-63 485-554 (716)
86 TIGR00972 3a0107s01c2 phosphat 99.0 5.6E-10 1.2E-14 70.0 3.5 34 4-37 18-51 (247)
87 PRK14267 phosphate ABC transpo 99.0 5.5E-10 1.2E-14 70.1 3.5 34 4-37 21-54 (253)
88 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.0 5.8E-10 1.3E-14 69.4 3.6 33 4-36 20-52 (238)
89 TIGR01184 ntrCD nitrate transp 99.0 5.8E-10 1.3E-14 69.5 3.5 33 4-36 2-34 (230)
90 cd03216 ABC_Carb_Monos_I This 99.0 5.7E-10 1.2E-14 66.5 3.3 33 4-36 17-49 (163)
91 cd03254 ABCC_Glucan_exporter_l 99.0 5.9E-10 1.3E-14 69.0 3.5 34 4-37 20-53 (229)
92 cd03295 ABC_OpuCA_Osmoprotecti 99.0 5.7E-10 1.2E-14 69.7 3.5 33 4-36 18-50 (242)
93 PRK14250 phosphate ABC transpo 99.0 5.7E-10 1.2E-14 69.8 3.5 33 4-36 20-52 (241)
94 cd03245 ABCC_bacteriocin_expor 99.0 6.1E-10 1.3E-14 68.6 3.5 33 4-36 21-53 (220)
95 PRK09493 glnQ glutamine ABC tr 99.0 5.8E-10 1.3E-14 69.6 3.5 34 4-37 18-51 (240)
96 PRK10744 pstB phosphate transp 99.0 5.8E-10 1.3E-14 70.5 3.5 34 4-37 30-63 (260)
97 TIGR02323 CP_lyasePhnK phospho 99.0 5.5E-10 1.2E-14 70.1 3.4 34 4-37 20-53 (253)
98 cd03215 ABC_Carb_Monos_II This 99.0 5.8E-10 1.3E-14 67.3 3.3 34 4-37 17-50 (182)
99 PRK11176 lipid transporter ATP 99.0 4.4E-10 9.6E-15 77.3 3.2 34 4-37 360-393 (582)
100 cd03223 ABCD_peroxisomal_ALDP 99.0 6.8E-10 1.5E-14 66.3 3.6 34 4-37 18-51 (166)
101 PRK14241 phosphate transporter 99.0 5.6E-10 1.2E-14 70.4 3.4 34 4-37 21-54 (258)
102 cd03232 ABC_PDR_domain2 The pl 99.0 5.4E-10 1.2E-14 68.0 3.2 32 4-35 24-55 (192)
103 PRK11247 ssuB aliphatic sulfon 99.0 5.8E-10 1.2E-14 70.9 3.4 34 4-37 29-62 (257)
104 TIGR03005 ectoine_ehuA ectoine 99.0 5.7E-10 1.2E-14 70.1 3.4 33 4-36 17-49 (252)
105 PRK14274 phosphate ABC transpo 99.0 6.4E-10 1.4E-14 70.2 3.6 34 4-37 29-62 (259)
106 TIGR02324 CP_lyasePhnL phospho 99.0 6.5E-10 1.4E-14 68.7 3.5 34 4-37 25-58 (224)
107 TIGR02770 nickel_nikD nickel i 99.0 6.3E-10 1.4E-14 69.2 3.5 34 4-37 3-36 (230)
108 cd03267 ABC_NatA_like Similar 99.0 6.2E-10 1.3E-14 69.6 3.4 33 4-36 38-70 (236)
109 cd03251 ABCC_MsbA MsbA is an e 99.0 6.5E-10 1.4E-14 69.0 3.5 34 4-37 19-52 (234)
110 PRK11124 artP arginine transpo 99.0 6.5E-10 1.4E-14 69.4 3.5 33 4-36 19-51 (242)
111 cd03228 ABCC_MRP_Like The MRP 99.0 7.2E-10 1.6E-14 66.3 3.5 34 4-37 19-52 (171)
112 cd03247 ABCC_cytochrome_bd The 99.0 6.5E-10 1.4E-14 66.8 3.4 33 5-37 20-52 (178)
113 TIGR01288 nodI ATP-binding ABC 99.0 6.3E-10 1.4E-14 71.9 3.5 33 4-36 21-53 (303)
114 PRK14240 phosphate transporter 99.0 6.6E-10 1.4E-14 69.7 3.5 33 4-36 20-52 (250)
115 PRK14262 phosphate ABC transpo 99.0 6.5E-10 1.4E-14 69.7 3.5 33 4-36 20-52 (250)
116 PRK14273 phosphate ABC transpo 99.0 7E-10 1.5E-14 69.7 3.6 34 4-37 24-57 (254)
117 TIGR02769 nickel_nikE nickel i 99.0 6.8E-10 1.5E-14 70.4 3.5 34 4-37 28-61 (265)
118 cd03244 ABCC_MRP_domain2 Domai 99.0 7.3E-10 1.6E-14 68.2 3.6 33 4-36 21-53 (221)
119 PRK13541 cytochrome c biogenes 99.0 6.9E-10 1.5E-14 67.5 3.4 31 6-36 19-49 (195)
120 cd03233 ABC_PDR_domain1 The pl 98.9 5.7E-10 1.2E-14 68.4 3.0 34 4-37 24-57 (202)
121 PRK14239 phosphate transporter 98.9 7E-10 1.5E-14 69.6 3.4 33 4-36 22-54 (252)
122 PRK13537 nodulation ABC transp 98.9 6.6E-10 1.4E-14 72.1 3.4 34 4-37 24-57 (306)
123 PRK11831 putative ABC transpor 98.9 6.5E-10 1.4E-14 70.7 3.3 34 4-37 24-57 (269)
124 PRK14256 phosphate ABC transpo 98.9 7.5E-10 1.6E-14 69.5 3.5 34 4-37 21-54 (252)
125 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.9 7E-10 1.5E-14 65.1 3.2 33 5-37 18-50 (144)
126 PRK14259 phosphate ABC transpo 98.9 7.3E-10 1.6E-14 70.5 3.5 33 4-36 30-62 (269)
127 PRK13638 cbiO cobalt transport 98.9 6.7E-10 1.5E-14 70.6 3.3 33 4-36 18-50 (271)
128 cd03298 ABC_ThiQ_thiamine_tran 98.9 7.7E-10 1.7E-14 67.8 3.4 33 5-37 16-48 (211)
129 PRK14248 phosphate ABC transpo 98.9 7.7E-10 1.7E-14 70.2 3.5 33 4-36 38-70 (268)
130 PRK10575 iron-hydroxamate tran 98.9 6.7E-10 1.5E-14 70.4 3.2 33 4-36 28-60 (265)
131 cd03214 ABC_Iron-Siderophores_ 98.9 8.3E-10 1.8E-14 66.5 3.5 34 4-37 16-49 (180)
132 cd03250 ABCC_MRP_domain1 Domai 98.9 8.3E-10 1.8E-14 67.4 3.5 33 4-36 22-54 (204)
133 cd03234 ABCG_White The White s 98.9 7.5E-10 1.6E-14 68.6 3.3 34 4-37 24-57 (226)
134 PRK15112 antimicrobial peptide 98.9 7.8E-10 1.7E-14 70.2 3.5 34 4-37 30-63 (267)
135 COG0444 DppD ABC-type dipeptid 98.9 5.5E-10 1.2E-14 73.1 2.8 35 4-38 22-56 (316)
136 TIGR00958 3a01208 Conjugate Tr 98.9 4.6E-10 9.9E-15 79.3 2.6 35 4-38 498-532 (711)
137 CHL00131 ycf16 sulfate ABC tra 98.9 7.1E-10 1.5E-14 69.5 3.2 33 4-36 24-56 (252)
138 PRK10790 putative multidrug tr 98.9 4.7E-10 1E-14 77.5 2.6 35 4-38 358-392 (592)
139 PRK13543 cytochrome c biogenes 98.9 8.5E-10 1.8E-14 68.0 3.5 33 4-36 28-60 (214)
140 cd03252 ABCC_Hemolysin The ABC 98.9 8.2E-10 1.8E-14 68.7 3.5 34 4-37 19-52 (237)
141 PRK15056 manganese/iron transp 98.9 7.4E-10 1.6E-14 70.5 3.3 33 4-36 24-56 (272)
142 PRK11614 livF leucine/isoleuci 98.9 6.8E-10 1.5E-14 69.2 3.0 33 4-36 22-54 (237)
143 PRK13548 hmuV hemin importer A 98.9 7.8E-10 1.7E-14 69.9 3.4 33 4-36 19-51 (258)
144 PRK15093 antimicrobial peptide 98.9 8E-10 1.7E-14 72.3 3.5 34 4-37 24-57 (330)
145 PRK11701 phnK phosphonate C-P 98.9 7.8E-10 1.7E-14 69.8 3.3 34 4-37 23-56 (258)
146 cd03231 ABC_CcmA_heme_exporter 98.9 9E-10 2E-14 67.3 3.5 34 4-37 17-50 (201)
147 PRK14261 phosphate ABC transpo 98.9 8.3E-10 1.8E-14 69.4 3.4 33 4-36 23-55 (253)
148 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.9 8.1E-10 1.8E-14 68.6 3.3 33 4-36 39-71 (224)
149 PRK13645 cbiO cobalt transport 98.9 7.5E-10 1.6E-14 71.0 3.2 34 4-37 28-61 (289)
150 cd03294 ABC_Pro_Gly_Bertaine T 98.9 8.5E-10 1.8E-14 70.2 3.4 34 4-37 41-74 (269)
151 cd03290 ABCC_SUR1_N The SUR do 98.9 8.9E-10 1.9E-14 67.9 3.5 33 4-36 18-50 (218)
152 PRK14255 phosphate ABC transpo 98.9 9.1E-10 2E-14 69.1 3.5 33 4-36 22-54 (252)
153 PRK11300 livG leucine/isoleuci 98.9 7.5E-10 1.6E-14 69.5 3.2 33 4-36 22-54 (255)
154 COG3638 ABC-type phosphate/pho 98.9 5.7E-10 1.2E-14 71.0 2.6 33 4-36 21-53 (258)
155 TIGR03411 urea_trans_UrtD urea 98.9 8.6E-10 1.9E-14 68.8 3.4 33 4-36 19-51 (242)
156 PRK14245 phosphate ABC transpo 98.9 8.4E-10 1.8E-14 69.3 3.3 33 4-36 20-52 (250)
157 cd03246 ABCC_Protease_Secretio 98.9 9.7E-10 2.1E-14 65.9 3.5 33 5-37 20-52 (173)
158 PRK14244 phosphate ABC transpo 98.9 9.1E-10 2E-14 69.2 3.5 33 4-36 22-54 (251)
159 cd03264 ABC_drug_resistance_li 98.9 7.8E-10 1.7E-14 67.8 3.1 32 4-36 17-48 (211)
160 PRK13649 cbiO cobalt transport 98.9 8E-10 1.7E-14 70.5 3.3 33 4-36 24-56 (280)
161 PRK11022 dppD dipeptide transp 98.9 8.3E-10 1.8E-14 72.2 3.4 34 4-37 24-57 (326)
162 PRK09544 znuC high-affinity zi 98.9 8.5E-10 1.8E-14 69.8 3.3 33 4-36 21-53 (251)
163 PRK14253 phosphate ABC transpo 98.9 9.8E-10 2.1E-14 68.9 3.6 34 4-37 20-53 (249)
164 PRK14272 phosphate ABC transpo 98.9 9.9E-10 2.1E-14 68.9 3.6 34 4-37 21-54 (252)
165 COG2274 SunT ABC-type bacterio 98.9 4.3E-10 9.3E-15 79.9 2.2 35 4-38 490-524 (709)
166 PRK14235 phosphate transporter 98.9 9.9E-10 2.1E-14 69.8 3.6 34 4-37 36-69 (267)
167 PRK13547 hmuV hemin importer A 98.9 9.1E-10 2E-14 70.4 3.4 34 4-37 18-51 (272)
168 PRK05057 aroK shikimate kinase 98.9 2.4E-09 5.2E-14 64.5 5.1 36 12-47 3-38 (172)
169 PRK14237 phosphate transporter 98.9 9.5E-10 2.1E-14 69.9 3.4 34 4-37 37-70 (267)
170 PRK14268 phosphate ABC transpo 98.9 9.4E-10 2E-14 69.5 3.4 33 4-36 29-61 (258)
171 PRK14251 phosphate ABC transpo 98.9 1E-09 2.2E-14 68.9 3.5 34 4-37 21-54 (251)
172 PRK13536 nodulation factor exp 98.9 9.3E-10 2E-14 72.5 3.5 34 4-37 58-91 (340)
173 TIGR02857 CydD thiol reductant 98.9 7E-10 1.5E-14 75.7 2.9 34 4-37 339-372 (529)
174 TIGR01193 bacteriocin_ABC ABC- 98.9 4.1E-10 9E-15 79.2 1.9 34 4-37 491-524 (708)
175 PRK13646 cbiO cobalt transport 98.9 9.2E-10 2E-14 70.6 3.3 33 4-36 24-56 (286)
176 TIGR03740 galliderm_ABC gallid 98.9 1E-09 2.2E-14 67.8 3.4 34 4-37 17-50 (223)
177 cd03248 ABCC_TAP TAP, the Tran 98.9 1.1E-09 2.4E-14 67.7 3.5 34 4-37 31-64 (226)
178 cd03217 ABC_FeS_Assembly ABC-t 98.9 1.2E-09 2.5E-14 66.9 3.6 33 4-36 17-49 (200)
179 COG1132 MdlB ABC-type multidru 98.9 8.6E-10 1.9E-14 75.9 3.3 59 4-63 346-415 (567)
180 PRK11153 metN DL-methionine tr 98.9 9.4E-10 2E-14 72.3 3.3 34 4-37 22-55 (343)
181 PRK10253 iron-enterobactin tra 98.9 9.8E-10 2.1E-14 69.7 3.3 34 4-37 24-57 (265)
182 PRK13637 cbiO cobalt transport 98.9 9.8E-10 2.1E-14 70.6 3.3 33 4-36 24-56 (287)
183 PRK10418 nikD nickel transport 98.9 1.1E-09 2.4E-14 69.0 3.5 33 4-36 20-52 (254)
184 PRK13648 cbiO cobalt transport 98.9 1.1E-09 2.3E-14 69.6 3.4 33 4-36 26-58 (269)
185 TIGR03796 NHPM_micro_ABC1 NHPM 98.9 4.5E-10 9.7E-15 79.0 1.8 34 4-37 496-529 (710)
186 PRK09984 phosphonate/organopho 98.9 1.1E-09 2.4E-14 69.2 3.4 34 4-37 21-54 (262)
187 PRK13651 cobalt transporter AT 98.9 9.8E-10 2.1E-14 71.3 3.3 33 4-36 24-56 (305)
188 PRK11231 fecE iron-dicitrate t 98.9 1.1E-09 2.3E-14 69.0 3.4 33 4-36 19-51 (255)
189 PRK13640 cbiO cobalt transport 98.9 1E-09 2.3E-14 70.3 3.4 34 4-37 24-57 (282)
190 PRK10771 thiQ thiamine transpo 98.9 1.1E-09 2.3E-14 68.1 3.3 32 5-36 17-48 (232)
191 PRK14265 phosphate ABC transpo 98.9 1.1E-09 2.5E-14 69.8 3.5 33 4-36 37-69 (274)
192 PRK09580 sufC cysteine desulfu 98.9 1E-09 2.2E-14 68.6 3.2 33 4-36 18-50 (248)
193 cd03253 ABCC_ATM1_transporter 98.9 1.2E-09 2.6E-14 67.9 3.5 33 4-36 18-50 (236)
194 PRK13644 cbiO cobalt transport 98.9 1.1E-09 2.3E-14 70.0 3.3 33 4-36 19-51 (274)
195 PRK11160 cysteine/glutathione 98.9 7.2E-10 1.6E-14 76.7 2.7 34 4-37 357-390 (574)
196 PRK13652 cbiO cobalt transport 98.9 1.1E-09 2.4E-14 69.9 3.3 33 4-36 21-53 (277)
197 PRK14270 phosphate ABC transpo 98.9 1.3E-09 2.7E-14 68.5 3.6 33 4-36 21-53 (251)
198 PRK14243 phosphate transporter 98.9 1.3E-09 2.8E-14 69.2 3.6 33 4-36 27-59 (264)
199 cd03369 ABCC_NFT1 Domain 2 of 98.9 1.4E-09 3E-14 66.6 3.6 33 4-36 25-57 (207)
200 PRK13641 cbiO cobalt transport 98.9 1.1E-09 2.4E-14 70.3 3.3 33 4-36 24-56 (287)
201 PRK03695 vitamin B12-transport 98.9 1.1E-09 2.4E-14 69.0 3.2 33 4-36 13-45 (248)
202 PRK13657 cyclic beta-1,2-gluca 98.9 7.8E-10 1.7E-14 76.4 2.7 34 4-37 352-385 (588)
203 PRK10619 histidine/lysine/argi 98.9 1.2E-09 2.7E-14 68.8 3.4 34 4-37 22-55 (257)
204 PRK14249 phosphate ABC transpo 98.9 1.3E-09 2.9E-14 68.4 3.5 34 4-37 21-54 (251)
205 PRK14269 phosphate ABC transpo 98.9 1.3E-09 2.8E-14 68.4 3.4 33 4-36 19-51 (246)
206 PRK13647 cbiO cobalt transport 98.9 1.2E-09 2.6E-14 69.7 3.4 34 4-37 22-55 (274)
207 PRK13632 cbiO cobalt transport 98.9 1.2E-09 2.7E-14 69.5 3.4 34 4-37 26-59 (271)
208 PRK14238 phosphate transporter 98.9 1.3E-09 2.9E-14 69.4 3.5 34 4-37 41-74 (271)
209 TIGR03873 F420-0_ABC_ATP propo 98.9 1.2E-09 2.6E-14 68.9 3.2 33 4-36 18-50 (256)
210 TIGR03375 type_I_sec_LssB type 98.9 7E-10 1.5E-14 77.9 2.4 34 4-37 482-515 (694)
211 TIGR00968 3a0106s01 sulfate AB 98.9 1.4E-09 3.1E-14 67.9 3.4 33 4-36 17-49 (237)
212 PRK11650 ugpC glycerol-3-phosp 98.9 1.4E-09 2.9E-14 72.1 3.4 32 5-36 22-53 (356)
213 PRK13639 cbiO cobalt transport 98.9 1.3E-09 2.9E-14 69.5 3.3 33 4-36 19-51 (275)
214 PRK13650 cbiO cobalt transport 98.9 1.3E-09 2.9E-14 69.7 3.3 34 4-37 24-57 (279)
215 TIGR02314 ABC_MetN D-methionin 98.9 1.3E-09 2.9E-14 71.9 3.4 34 4-37 22-55 (343)
216 TIGR03522 GldA_ABC_ATP gliding 98.9 1.2E-09 2.6E-14 70.6 3.1 33 4-36 19-51 (301)
217 PRK10419 nikE nickel transport 98.9 1.5E-09 3.2E-14 69.1 3.4 33 4-36 29-61 (268)
218 PRK13634 cbiO cobalt transport 98.9 1.4E-09 2.9E-14 70.0 3.3 33 4-36 24-56 (290)
219 PRK11000 maltose/maltodextrin 98.9 1.4E-09 3E-14 72.3 3.4 33 4-36 20-52 (369)
220 PRK13643 cbiO cobalt transport 98.9 1.4E-09 3E-14 69.9 3.3 33 4-36 23-55 (288)
221 PRK14260 phosphate ABC transpo 98.9 1.5E-09 3.3E-14 68.5 3.5 34 4-37 24-57 (259)
222 PRK09473 oppD oligopeptide tra 98.9 1.3E-09 2.9E-14 71.4 3.3 34 4-37 33-66 (330)
223 PRK13635 cbiO cobalt transport 98.9 1.4E-09 3.1E-14 69.6 3.4 33 4-36 24-56 (279)
224 cd03213 ABCG_EPDR ABCG transpo 98.9 1.6E-09 3.4E-14 66.1 3.4 34 4-37 26-59 (194)
225 COG4559 ABC-type hemin transpo 98.9 1.5E-09 3.1E-14 68.6 3.2 35 4-38 18-52 (259)
226 TIGR01277 thiQ thiamine ABC tr 98.9 1.5E-09 3.2E-14 66.8 3.2 33 4-36 15-47 (213)
227 PRK13546 teichoic acids export 98.9 1.5E-09 3.3E-14 69.2 3.4 33 4-36 41-73 (264)
228 PRK11432 fbpC ferric transport 98.9 1.6E-09 3.4E-14 71.7 3.5 33 4-36 23-55 (351)
229 PRK14532 adenylate kinase; Pro 98.9 3.1E-09 6.8E-14 64.1 4.5 33 15-47 2-34 (188)
230 PRK14252 phosphate ABC transpo 98.9 1.6E-09 3.6E-14 68.6 3.4 33 4-36 33-65 (265)
231 PRK14275 phosphate ABC transpo 98.9 1.6E-09 3.4E-14 69.6 3.4 33 4-36 56-88 (286)
232 TIGR02982 heterocyst_DevA ABC 98.9 1.7E-09 3.8E-14 66.7 3.5 33 4-36 22-54 (220)
233 PF13671 AAA_33: AAA domain; P 98.9 2E-09 4.3E-14 61.9 3.5 33 15-47 1-33 (143)
234 TIGR01360 aden_kin_iso1 adenyl 98.9 2.2E-09 4.8E-14 64.2 3.8 34 13-46 3-36 (188)
235 PRK14236 phosphate transporter 98.9 1.7E-09 3.6E-14 68.9 3.4 33 4-36 42-74 (272)
236 TIGR02204 MsbA_rel ABC transpo 98.9 1.1E-09 2.5E-14 75.2 2.8 34 4-37 357-390 (576)
237 PRK11308 dppF dipeptide transp 98.9 1.7E-09 3.7E-14 70.8 3.5 34 4-37 32-65 (327)
238 PRK14266 phosphate ABC transpo 98.9 1.8E-09 4E-14 67.7 3.5 33 4-36 20-52 (250)
239 PRK15079 oligopeptide ABC tran 98.9 1.7E-09 3.6E-14 71.0 3.4 34 4-37 38-71 (331)
240 PRK14254 phosphate ABC transpo 98.9 1.8E-09 3.9E-14 69.4 3.4 34 4-37 56-89 (285)
241 cd00820 PEPCK_HprK Phosphoenol 98.9 1.8E-09 3.9E-14 61.3 3.0 31 4-34 6-36 (107)
242 cd03300 ABC_PotA_N PotA is an 98.9 2.2E-09 4.7E-14 66.9 3.6 34 4-37 17-50 (232)
243 COG1134 TagH ABC-type polysacc 98.9 2E-09 4.3E-14 68.5 3.4 34 4-37 44-77 (249)
244 PRK13633 cobalt transporter AT 98.9 1.9E-09 4E-14 69.0 3.4 33 4-36 27-59 (280)
245 PRK13947 shikimate kinase; Pro 98.9 3.8E-09 8.3E-14 62.7 4.5 33 15-47 3-35 (171)
246 COG4988 CydD ABC-type transpor 98.9 2E-09 4.3E-14 74.7 3.7 60 4-63 338-407 (559)
247 PRK14271 phosphate ABC transpo 98.9 2E-09 4.3E-14 68.8 3.5 34 4-37 38-71 (276)
248 TIGR03265 PhnT2 putative 2-ami 98.9 1.8E-09 4E-14 71.4 3.4 32 5-36 22-53 (353)
249 PRK10851 sulfate/thiosulfate t 98.9 1.8E-09 3.9E-14 71.4 3.3 33 4-36 19-51 (353)
250 PRK00625 shikimate kinase; Pro 98.9 3.2E-09 7E-14 64.3 4.2 34 15-48 2-35 (173)
251 TIGR01359 UMP_CMP_kin_fam UMP- 98.9 3.2E-09 6.9E-14 63.6 4.1 33 15-47 1-33 (183)
252 PRK13949 shikimate kinase; Pro 98.9 3.5E-09 7.6E-14 63.7 4.3 34 14-47 2-35 (169)
253 PRK14263 phosphate ABC transpo 98.9 2E-09 4.4E-14 68.3 3.4 34 4-37 25-58 (261)
254 COG0411 LivG ABC-type branched 98.9 2.3E-10 5E-15 72.7 -0.9 35 3-37 20-54 (250)
255 PLN02200 adenylate kinase fami 98.9 5E-09 1.1E-13 66.0 5.1 40 8-47 38-77 (234)
256 TIGR01186 proV glycine betaine 98.9 1.8E-09 4E-14 71.7 3.2 34 4-37 10-43 (363)
257 COG2884 FtsE Predicted ATPase 98.9 2.4E-09 5.1E-14 66.6 3.5 33 4-36 19-51 (223)
258 PRK14258 phosphate ABC transpo 98.9 2.3E-09 4.9E-14 67.9 3.5 34 4-37 24-57 (261)
259 PTZ00088 adenylate kinase 1; P 98.9 5.2E-09 1.1E-13 65.9 5.1 36 13-48 6-41 (229)
260 PRK13636 cbiO cobalt transport 98.9 2.2E-09 4.7E-14 68.8 3.4 34 4-37 23-56 (283)
261 PRK13631 cbiO cobalt transport 98.9 2.1E-09 4.5E-14 70.2 3.4 34 4-37 43-76 (320)
262 PRK10938 putative molybdenum t 98.9 2.1E-09 4.6E-14 73.0 3.5 34 4-37 20-53 (490)
263 COG0703 AroK Shikimate kinase 98.9 2.7E-09 5.9E-14 64.9 3.6 35 13-47 2-36 (172)
264 TIGR02203 MsbA_lipidA lipid A 98.9 1.4E-09 3.1E-14 74.5 2.7 34 4-37 349-382 (571)
265 COG1123 ATPase components of v 98.9 2.1E-09 4.6E-14 74.4 3.4 35 3-37 307-341 (539)
266 TIGR01842 type_I_sec_PrtD type 98.9 1.7E-09 3.6E-14 74.3 2.9 34 4-37 335-368 (544)
267 COG4604 CeuD ABC-type enteroch 98.9 3.6E-09 7.9E-14 66.4 4.1 35 4-38 18-52 (252)
268 PRK09536 btuD corrinoid ABC tr 98.9 2.1E-09 4.6E-14 72.3 3.3 34 4-37 20-53 (402)
269 PRK13642 cbiO cobalt transport 98.9 2.4E-09 5.1E-14 68.4 3.4 34 4-37 24-57 (277)
270 PRK10078 ribose 1,5-bisphospho 98.9 4.5E-09 9.7E-14 63.7 4.4 33 13-45 2-34 (186)
271 PRK10522 multidrug transporter 98.9 1.1E-09 2.3E-14 75.4 1.8 34 4-37 340-373 (547)
272 PRK11144 modC molybdate transp 98.8 2.4E-09 5.1E-14 70.7 3.4 32 5-36 16-47 (352)
273 TIGR01313 therm_gnt_kin carboh 98.8 3.7E-09 8E-14 62.5 3.9 32 16-47 1-32 (163)
274 TIGR03269 met_CoM_red_A2 methy 98.8 2.4E-09 5.2E-14 73.2 3.5 33 4-36 17-49 (520)
275 PRK09700 D-allose transporter 98.8 2E-09 4.4E-14 73.4 3.1 34 4-37 22-55 (510)
276 cd00267 ABC_ATPase ABC (ATP-bi 98.8 2.8E-09 6E-14 62.8 3.3 33 5-37 17-49 (157)
277 PRK09452 potA putrescine/sperm 98.8 2.4E-09 5.3E-14 71.4 3.3 32 5-36 32-63 (375)
278 cd03297 ABC_ModC_molybdenum_tr 98.8 2.6E-09 5.7E-14 65.6 3.3 32 5-37 16-47 (214)
279 cd03291 ABCC_CFTR1 The CFTR su 98.8 2.7E-09 5.9E-14 68.7 3.4 34 4-37 54-87 (282)
280 cd03222 ABC_RNaseL_inhibitor T 98.8 3E-09 6.5E-14 64.7 3.4 30 7-36 19-48 (177)
281 cd02020 CMPK Cytidine monophos 98.8 4E-09 8.6E-14 60.8 3.8 32 15-46 1-32 (147)
282 TIGR02142 modC_ABC molybdenum 98.8 2.6E-09 5.7E-14 70.5 3.4 33 5-37 15-47 (354)
283 PRK10070 glycine betaine trans 98.8 2.3E-09 5.1E-14 72.0 3.2 34 4-37 45-78 (400)
284 KOG0055|consensus 98.8 3.3E-09 7.2E-14 78.4 4.2 61 4-64 1007-1077(1228)
285 cd03299 ABC_ModC_like Archeal 98.8 2.8E-09 6.1E-14 66.5 3.3 33 4-36 16-48 (235)
286 PRK13948 shikimate kinase; Pro 98.8 7.1E-09 1.5E-13 63.3 5.0 36 12-47 9-44 (182)
287 PRK15064 ABC transporter ATP-b 98.8 2.8E-09 6E-14 73.1 3.6 33 4-36 18-50 (530)
288 COG4555 NatA ABC-type Na+ tran 98.8 1.9E-09 4.1E-14 67.7 2.5 34 4-37 19-52 (245)
289 PRK10762 D-ribose transporter 98.8 2.4E-09 5.1E-14 73.0 3.2 34 4-37 21-54 (501)
290 PRK10789 putative multidrug tr 98.8 1.8E-09 3.9E-14 74.6 2.6 34 4-37 332-365 (569)
291 PRK09700 D-allose transporter 98.8 2.5E-09 5.5E-14 72.9 3.3 33 4-36 280-312 (510)
292 PRK10636 putative ABC transpor 98.8 2.7E-09 5.8E-14 74.9 3.5 33 4-36 18-50 (638)
293 PRK14527 adenylate kinase; Pro 98.8 4E-09 8.6E-14 64.1 3.8 37 11-47 4-40 (191)
294 PRK13549 xylose transporter AT 98.8 2.4E-09 5.1E-14 73.1 3.1 34 4-37 22-55 (506)
295 PRK14264 phosphate ABC transpo 98.8 3E-09 6.5E-14 68.9 3.5 34 4-37 62-95 (305)
296 TIGR03258 PhnT 2-aminoethylpho 98.8 2.9E-09 6.3E-14 70.7 3.4 33 4-36 22-54 (362)
297 TIGR00235 udk uridine kinase. 98.8 5E-09 1.1E-13 64.4 4.2 37 11-47 4-43 (207)
298 cd03270 ABC_UvrA_I The excisio 98.8 2.9E-09 6.2E-14 66.4 3.2 27 4-30 12-38 (226)
299 PRK11819 putative ABC transpor 98.8 3E-09 6.6E-14 73.4 3.6 34 4-37 24-57 (556)
300 PRK14531 adenylate kinase; Pro 98.8 6.3E-09 1.4E-13 62.9 4.6 34 14-47 3-36 (183)
301 PRK15134 microcin C ABC transp 98.8 2.8E-09 6.1E-14 73.0 3.4 34 4-37 26-59 (529)
302 cd02021 GntK Gluconate kinase 98.8 5.6E-09 1.2E-13 60.9 4.1 33 15-47 1-33 (150)
303 PRK11607 potG putrescine trans 98.8 3E-09 6.6E-14 70.9 3.3 32 5-36 37-68 (377)
304 PRK14246 phosphate ABC transpo 98.8 3.4E-09 7.4E-14 67.1 3.4 33 4-36 27-59 (257)
305 PRK09825 idnK D-gluconate kina 98.8 7.5E-09 1.6E-13 62.7 4.7 36 12-47 2-37 (176)
306 TIGR02633 xylG D-xylose ABC tr 98.8 3.1E-09 6.7E-14 72.3 3.3 34 4-37 18-51 (500)
307 PRK15439 autoinducer 2 ABC tra 98.8 3.2E-09 6.9E-14 72.6 3.3 34 4-37 28-61 (510)
308 cd03288 ABCC_SUR2 The SUR doma 98.8 3.7E-09 7.9E-14 66.8 3.4 34 4-37 38-71 (257)
309 PRK10938 putative molybdenum t 98.8 3.2E-09 6.9E-14 72.1 3.3 33 4-36 277-309 (490)
310 TIGR01846 type_I_sec_HlyB type 98.8 2.6E-09 5.6E-14 75.2 2.8 34 4-37 474-507 (694)
311 PRK06547 hypothetical protein; 98.8 6.5E-09 1.4E-13 62.9 4.2 37 11-47 13-49 (172)
312 cd03289 ABCC_CFTR2 The CFTR su 98.8 4.2E-09 9.1E-14 67.6 3.6 34 4-37 21-54 (275)
313 PRK10261 glutathione transport 98.8 3.4E-09 7.3E-14 74.1 3.4 34 4-37 33-66 (623)
314 TIGR03415 ABC_choXWV_ATP choli 98.8 3.4E-09 7.3E-14 70.9 3.3 34 4-37 41-74 (382)
315 COG0410 LivF ABC-type branched 98.8 4.1E-09 8.9E-14 66.7 3.5 31 5-35 21-51 (237)
316 PRK11147 ABC transporter ATPas 98.8 3.4E-09 7.4E-14 74.2 3.4 33 4-36 20-52 (635)
317 cd00464 SK Shikimate kinase (S 98.8 5.8E-09 1.3E-13 60.7 3.8 33 15-47 1-33 (154)
318 COG1118 CysA ABC-type sulfate/ 98.8 4.3E-09 9.4E-14 69.1 3.5 31 5-35 20-50 (345)
319 COG4987 CydC ABC-type transpor 98.8 4.4E-09 9.6E-14 72.8 3.8 34 4-37 355-388 (573)
320 PRK13549 xylose transporter AT 98.8 3.7E-09 8E-14 72.1 3.3 33 4-36 279-311 (506)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 98.8 4.5E-09 9.7E-14 72.5 3.6 34 4-37 22-55 (552)
322 COG1102 Cmk Cytidylate kinase 98.8 7.3E-09 1.6E-13 62.8 4.1 32 15-46 2-33 (179)
323 COG4525 TauB ABC-type taurine 98.8 5.2E-09 1.1E-13 65.7 3.5 33 4-36 22-54 (259)
324 PRK15134 microcin C ABC transp 98.8 4.4E-09 9.5E-14 72.1 3.5 33 4-36 303-335 (529)
325 TIGR02633 xylG D-xylose ABC tr 98.8 4E-09 8.7E-14 71.8 3.2 33 4-36 277-309 (500)
326 COG4618 ArpD ABC-type protease 98.8 3.2E-09 6.9E-14 73.3 2.7 32 4-35 353-384 (580)
327 TIGR03269 met_CoM_red_A2 methy 98.8 4.4E-09 9.5E-14 71.9 3.4 33 4-36 301-333 (520)
328 cd03237 ABC_RNaseL_inhibitor_d 98.8 5.9E-09 1.3E-13 65.9 3.8 29 8-36 20-48 (246)
329 TIGR01192 chvA glucan exporter 98.8 3.2E-09 6.9E-14 73.7 2.7 34 4-37 352-385 (585)
330 PRK05480 uridine/cytidine kina 98.8 1E-08 2.2E-13 62.9 4.6 37 11-47 4-43 (209)
331 KOG0057|consensus 98.8 4.8E-09 1E-13 72.8 3.5 35 4-38 369-403 (591)
332 TIGR03771 anch_rpt_ABC anchore 98.8 6E-09 1.3E-13 64.6 3.6 29 8-36 1-29 (223)
333 PRK10261 glutathione transport 98.8 4.7E-09 1E-13 73.4 3.5 34 4-37 341-374 (623)
334 TIGR01194 cyc_pep_trnsptr cycl 98.8 2.7E-09 5.8E-14 73.6 2.2 34 4-37 359-392 (555)
335 PRK10982 galactose/methyl gala 98.8 4.3E-09 9.3E-14 71.5 3.1 33 4-36 15-47 (491)
336 cd01428 ADK Adenylate kinase ( 98.8 8.2E-09 1.8E-13 62.1 4.0 32 16-47 2-33 (194)
337 PF00004 AAA: ATPase family as 98.8 1.1E-08 2.4E-13 57.7 4.4 35 16-50 1-35 (132)
338 PRK11288 araG L-arabinose tran 98.8 4.2E-09 9.1E-14 71.8 3.1 33 4-36 270-302 (501)
339 PLN03232 ABC transporter C fam 98.8 3.3E-09 7.1E-14 79.8 2.7 59 4-63 1253-1322(1495)
340 PRK15064 ABC transporter ATP-b 98.8 5.5E-09 1.2E-13 71.7 3.5 33 4-36 336-368 (530)
341 PRK13946 shikimate kinase; Pro 98.8 1E-08 2.2E-13 62.1 4.3 34 13-46 10-43 (184)
342 COG1127 Ttg2A ABC-type transpo 98.8 6.2E-09 1.3E-13 66.4 3.4 33 4-36 25-57 (263)
343 PRK10762 D-ribose transporter 98.8 5.6E-09 1.2E-13 71.2 3.4 33 4-36 269-301 (501)
344 PRK10636 putative ABC transpor 98.8 5.9E-09 1.3E-13 73.2 3.5 33 4-36 329-361 (638)
345 PRK14257 phosphate ABC transpo 98.8 6.3E-09 1.4E-13 68.3 3.4 34 4-37 99-132 (329)
346 PRK11288 araG L-arabinose tran 98.8 5.5E-09 1.2E-13 71.2 3.2 33 4-36 21-53 (501)
347 PLN03130 ABC transporter C fam 98.8 4.6E-09 9.9E-14 79.6 3.0 60 4-63 1256-1325(1622)
348 COG4107 PhnK ABC-type phosphon 98.8 1.1E-08 2.3E-13 63.6 4.1 34 4-37 23-56 (258)
349 PRK15439 autoinducer 2 ABC tra 98.8 5.5E-09 1.2E-13 71.5 3.2 33 4-36 280-312 (510)
350 COG0283 Cmk Cytidylate kinase 98.8 1.3E-08 2.9E-13 63.8 4.6 41 14-56 5-45 (222)
351 PRK03731 aroL shikimate kinase 98.8 1.4E-08 2.9E-13 60.4 4.5 34 14-47 3-36 (171)
352 PRK11147 ABC transporter ATPas 98.8 6.4E-09 1.4E-13 72.8 3.5 33 4-36 336-368 (635)
353 KOG0055|consensus 98.8 7.2E-09 1.6E-13 76.7 3.8 60 4-63 370-439 (1228)
354 PRK10982 galactose/methyl gala 98.8 5.5E-09 1.2E-13 71.0 3.0 33 4-36 265-297 (491)
355 TIGR00957 MRP_assoc_pro multi 98.8 5.7E-09 1.2E-13 78.7 3.3 60 4-63 1303-1372(1522)
356 PRK00300 gmk guanylate kinase; 98.8 1E-08 2.3E-13 62.4 3.9 29 10-38 2-30 (205)
357 COG1119 ModF ABC-type molybden 98.8 7.8E-09 1.7E-13 66.0 3.4 32 5-36 49-80 (257)
358 PRK13477 bifunctional pantoate 98.8 1.3E-08 2.9E-13 70.3 4.8 40 12-53 283-322 (512)
359 PLN03073 ABC transporter F fam 98.7 6.8E-09 1.5E-13 73.9 3.2 32 4-35 194-225 (718)
360 PRK00279 adk adenylate kinase; 98.7 1.7E-08 3.8E-13 62.3 4.7 33 15-47 2-34 (215)
361 TIGR03719 ABC_ABC_ChvD ATP-bin 98.7 7.1E-09 1.5E-13 71.5 3.3 33 4-36 339-371 (552)
362 PRK11819 putative ABC transpor 98.7 8.6E-09 1.9E-13 71.2 3.5 33 4-36 341-373 (556)
363 PTZ00265 multidrug resistance 98.7 8.1E-09 1.8E-13 77.8 3.6 36 4-39 1185-1220(1466)
364 cd00227 CPT Chloramphenicol (C 98.7 1.7E-08 3.7E-13 60.6 4.3 36 12-47 1-38 (175)
365 PRK04182 cytidylate kinase; Pr 98.7 1.2E-08 2.5E-13 60.6 3.6 32 15-46 2-33 (180)
366 PRK02496 adk adenylate kinase; 98.7 1.2E-08 2.6E-13 61.4 3.7 34 14-47 2-35 (184)
367 PTZ00243 ABC transporter; Prov 98.7 7.1E-09 1.5E-13 78.4 3.2 59 4-63 1327-1396(1560)
368 PRK14528 adenylate kinase; Pro 98.7 1.7E-08 3.6E-13 61.4 4.3 34 14-47 2-35 (186)
369 KOG3354|consensus 98.7 2E-08 4.3E-13 60.9 4.5 41 14-54 13-53 (191)
370 TIGR01351 adk adenylate kinase 98.7 1.4E-08 3.1E-13 62.4 3.9 32 16-47 2-33 (210)
371 PRK08233 hypothetical protein; 98.7 2.3E-08 4.9E-13 59.5 4.6 34 13-46 3-37 (182)
372 COG1122 CbiO ABC-type cobalt t 98.7 1.1E-08 2.4E-13 64.8 3.3 32 5-36 22-53 (235)
373 COG4133 CcmA ABC-type transpor 98.7 1.3E-08 2.8E-13 63.1 3.5 32 5-36 20-51 (209)
374 PRK06762 hypothetical protein; 98.7 2.4E-08 5.1E-13 59.2 4.5 33 13-45 2-36 (166)
375 COG4152 ABC-type uncharacteriz 98.7 9.1E-09 2E-13 66.2 2.6 61 4-64 19-85 (300)
376 cd03236 ABC_RNaseL_inhibitor_d 98.7 1.8E-08 3.8E-13 64.1 3.9 32 5-37 19-50 (255)
377 COG1123 ATPase components of v 98.7 8E-09 1.7E-13 71.6 2.4 35 4-38 26-60 (539)
378 COG4586 ABC-type uncharacteriz 98.7 1.2E-08 2.5E-13 66.4 2.9 33 4-36 41-73 (325)
379 KOG1384|consensus 98.7 1.7E-08 3.6E-13 66.6 3.6 50 12-61 6-55 (348)
380 PTZ00265 multidrug resistance 98.7 1.3E-08 2.9E-13 76.7 3.5 35 4-38 402-436 (1466)
381 TIGR00017 cmk cytidylate kinas 98.7 3E-08 6.6E-13 61.9 4.6 33 14-46 3-35 (217)
382 PRK14730 coaE dephospho-CoA ki 98.7 2.7E-08 5.8E-13 61.1 4.3 34 14-47 2-35 (195)
383 PLN03073 ABC transporter F fam 98.7 1.4E-08 3E-13 72.3 3.4 33 4-36 526-558 (718)
384 PRK08154 anaerobic benzoate ca 98.7 2.6E-08 5.6E-13 64.8 4.3 39 9-47 129-167 (309)
385 TIGR02173 cyt_kin_arch cytidyl 98.7 2.4E-08 5.2E-13 58.9 3.7 32 15-46 2-33 (171)
386 PRK01184 hypothetical protein; 98.7 2.8E-08 6E-13 59.8 4.0 32 14-46 2-33 (184)
387 TIGR02322 phosphon_PhnN phosph 98.7 2.3E-08 5.1E-13 59.8 3.7 26 13-38 1-26 (179)
388 cd03283 ABC_MutS-like MutS-lik 98.7 2E-08 4.3E-13 61.9 3.4 29 7-35 19-47 (199)
389 cd03278 ABC_SMC_barmotin Barmo 98.7 2E-08 4.4E-13 61.6 3.4 32 5-37 15-46 (197)
390 PHA02530 pseT polynucleotide k 98.7 2.9E-08 6.4E-13 63.5 4.2 34 14-47 3-37 (300)
391 cd02023 UMPK Uridine monophosp 98.7 2.9E-08 6.2E-13 60.4 3.9 33 15-47 1-36 (198)
392 PRK13545 tagH teichoic acids e 98.7 1.7E-08 3.8E-13 70.1 3.2 34 4-37 41-74 (549)
393 TIGR01271 CFTR_protein cystic 98.7 1.7E-08 3.6E-13 76.2 3.3 59 4-63 1236-1304(1490)
394 PLN02674 adenylate kinase 98.7 3.6E-08 7.7E-13 62.8 4.4 37 11-47 29-65 (244)
395 PRK05541 adenylylsulfate kinas 98.7 3.3E-08 7.2E-13 59.1 4.0 29 10-38 4-32 (176)
396 COG1135 AbcC ABC-type metal io 98.7 2.1E-08 4.5E-13 66.0 3.3 31 4-34 23-53 (339)
397 smart00382 AAA ATPases associa 98.7 4.8E-08 1E-12 54.2 4.4 28 13-40 2-29 (148)
398 cd02024 NRK1 Nicotinamide ribo 98.7 3.4E-08 7.4E-13 60.6 4.0 35 15-49 1-36 (187)
399 TIGR00954 3a01203 Peroxysomal 98.7 2.2E-08 4.8E-13 70.5 3.5 34 4-37 469-502 (659)
400 PRK04040 adenylate kinase; Pro 98.7 5.2E-08 1.1E-12 59.6 4.7 35 13-47 2-38 (188)
401 TIGR03263 guanyl_kin guanylate 98.7 2.7E-08 5.8E-13 59.5 3.4 26 13-38 1-26 (180)
402 PRK13409 putative ATPase RIL; 98.7 2.4E-08 5.1E-13 69.8 3.5 32 5-36 357-388 (590)
403 COG3840 ThiQ ABC-type thiamine 98.7 2.6E-08 5.5E-13 62.0 3.3 30 7-36 19-48 (231)
404 PLN03211 ABC transporter G-25; 98.6 1.8E-08 4E-13 71.1 2.9 34 4-37 85-118 (659)
405 COG0488 Uup ATPase components 98.6 2.6E-08 5.7E-13 69.0 3.6 34 4-37 20-53 (530)
406 PRK06696 uridine kinase; Valid 98.6 6.1E-08 1.3E-12 60.2 4.7 36 12-47 21-61 (223)
407 PF00406 ADK: Adenylate kinase 98.6 3E-08 6.4E-13 58.1 3.2 30 18-47 1-30 (151)
408 PRK00023 cmk cytidylate kinase 98.6 4.8E-08 1E-12 61.2 4.2 34 13-46 4-37 (225)
409 cd03243 ABC_MutS_homologs The 98.6 3E-08 6.6E-13 60.7 3.1 28 7-34 23-50 (202)
410 PRK14526 adenylate kinase; Pro 98.6 5.9E-08 1.3E-12 60.4 4.5 33 15-47 2-34 (211)
411 COG4167 SapF ABC-type antimicr 98.6 3.1E-08 6.7E-13 61.9 3.2 33 4-36 30-62 (267)
412 COG0488 Uup ATPase components 98.6 3.5E-08 7.6E-13 68.4 3.7 33 5-37 340-372 (530)
413 cd02025 PanK Pantothenate kina 98.6 4.3E-08 9.4E-13 61.2 3.8 33 15-47 1-40 (220)
414 COG4136 ABC-type uncharacteriz 98.6 3.9E-08 8.5E-13 59.8 3.5 34 5-38 20-53 (213)
415 COG0572 Udk Uridine kinase [Nu 98.6 6.4E-08 1.4E-12 60.8 4.5 36 12-47 7-45 (218)
416 PLN02459 probable adenylate ki 98.6 7.9E-08 1.7E-12 61.8 5.0 37 11-47 27-63 (261)
417 KOG0056|consensus 98.6 6E-08 1.3E-12 67.6 4.5 35 4-38 555-589 (790)
418 COG0529 CysC Adenylylsulfate k 98.6 6E-08 1.3E-12 59.7 4.0 42 9-50 19-63 (197)
419 PF00485 PRK: Phosphoribulokin 98.6 5.5E-08 1.2E-12 59.2 3.8 24 15-38 1-24 (194)
420 cd03280 ABC_MutS2 MutS2 homolo 98.6 4.4E-08 9.5E-13 60.0 3.3 30 5-34 19-49 (200)
421 PRK00889 adenylylsulfate kinas 98.6 7E-08 1.5E-12 57.7 4.1 27 11-37 2-28 (175)
422 COG4181 Predicted ABC-type tra 98.6 4.6E-08 1E-12 60.5 3.3 30 5-34 28-57 (228)
423 TIGR03238 dnd_assoc_3 dnd syst 98.6 3.7E-08 8E-13 67.8 3.1 27 5-31 24-50 (504)
424 cd02022 DPCK Dephospho-coenzym 98.6 6.2E-08 1.3E-12 58.5 3.8 32 15-47 1-32 (179)
425 cd01130 VirB11-like_ATPase Typ 98.6 3.3E-08 7.2E-13 60.0 2.6 32 6-37 18-49 (186)
426 PLN02199 shikimate kinase 98.6 8.5E-08 1.8E-12 62.7 4.3 36 12-47 101-136 (303)
427 PF01583 APS_kinase: Adenylyls 98.6 8.1E-08 1.8E-12 57.7 3.9 40 12-51 1-43 (156)
428 KOG3347|consensus 98.6 9.2E-08 2E-12 57.6 4.0 36 12-47 6-41 (176)
429 COG4175 ProV ABC-type proline/ 98.6 4E-08 8.7E-13 65.1 2.6 34 4-37 45-78 (386)
430 PTZ00301 uridine kinase; Provi 98.6 8.2E-08 1.8E-12 59.8 3.8 24 14-37 4-27 (210)
431 PRK00081 coaE dephospho-CoA ki 98.6 1E-07 2.3E-12 58.3 4.2 33 14-47 3-35 (194)
432 COG1129 MglA ABC-type sugar tr 98.6 5.4E-08 1.2E-12 67.1 3.2 32 4-35 25-56 (500)
433 PRK13409 putative ATPase RIL; 98.6 7.3E-08 1.6E-12 67.4 3.8 31 5-36 92-122 (590)
434 COG3845 ABC-type uncharacteriz 98.5 6.3E-08 1.4E-12 66.5 3.2 35 3-37 20-54 (501)
435 TIGR00955 3a01204 The Eye Pigm 98.5 6E-08 1.3E-12 67.9 3.1 34 4-37 42-75 (617)
436 PRK09518 bifunctional cytidyla 98.5 1.1E-07 2.3E-12 67.7 4.3 32 15-46 3-34 (712)
437 TIGR00554 panK_bact pantothena 98.5 1.4E-07 2.9E-12 61.4 4.4 38 11-48 60-104 (290)
438 PRK03846 adenylylsulfate kinas 98.5 1.7E-07 3.7E-12 57.3 4.5 27 11-37 22-48 (198)
439 PRK14529 adenylate kinase; Pro 98.5 1.1E-07 2.4E-12 59.8 3.7 32 15-46 2-33 (223)
440 cd02019 NK Nucleoside/nucleoti 98.5 1.6E-07 3.6E-12 49.0 3.8 23 15-37 1-23 (69)
441 cd00009 AAA The AAA+ (ATPases 98.5 2.5E-07 5.5E-12 51.9 4.8 35 12-46 18-55 (151)
442 PRK10535 macrolide transporter 98.5 8.7E-08 1.9E-12 67.4 3.4 34 4-37 25-58 (648)
443 TIGR00150 HI0065_YjeE ATPase, 98.5 1.9E-07 4E-12 54.8 4.2 30 10-39 19-48 (133)
444 TIGR01271 CFTR_protein cystic 98.5 6.4E-08 1.4E-12 73.1 2.8 34 4-37 443-476 (1490)
445 PF07728 AAA_5: AAA domain (dy 98.5 2.4E-07 5.2E-12 53.3 4.6 28 15-42 1-28 (139)
446 PRK14731 coaE dephospho-CoA ki 98.5 1.9E-07 4.1E-12 57.7 4.4 33 14-47 6-38 (208)
447 PRK08356 hypothetical protein; 98.5 2.1E-07 4.5E-12 56.8 4.5 32 14-46 6-37 (195)
448 COG4615 PvdE ABC-type sideroph 98.5 6.6E-08 1.4E-12 65.8 2.5 31 6-36 342-372 (546)
449 COG4172 ABC-type uncharacteriz 98.5 6.4E-08 1.4E-12 66.0 2.4 35 3-37 303-337 (534)
450 PRK14733 coaE dephospho-CoA ki 98.5 2.2E-07 4.8E-12 57.8 4.5 34 14-47 7-40 (204)
451 PLN03130 ABC transporter C fam 98.5 6.5E-08 1.4E-12 73.5 2.5 35 4-38 634-668 (1622)
452 PRK12338 hypothetical protein; 98.5 2.2E-07 4.7E-12 61.2 4.7 34 12-45 3-36 (319)
453 PLN03140 ABC transporter G fam 98.5 7.9E-08 1.7E-12 72.7 2.8 34 4-37 182-215 (1470)
454 PRK13808 adenylate kinase; Pro 98.5 1.9E-07 4.1E-12 61.8 4.2 33 15-47 2-34 (333)
455 TIGR00957 MRP_assoc_pro multi 98.5 8.4E-08 1.8E-12 72.6 2.8 34 4-37 655-688 (1522)
456 PF13238 AAA_18: AAA domain; P 98.5 1.6E-07 3.6E-12 52.7 3.4 22 16-37 1-22 (129)
457 PRK14021 bifunctional shikimat 98.5 1.7E-07 3.8E-12 65.0 4.2 36 12-47 5-40 (542)
458 PRK15453 phosphoribulokinase; 98.5 2.6E-07 5.5E-12 60.2 4.5 39 11-49 3-46 (290)
459 PRK11545 gntK gluconate kinase 98.5 1.5E-07 3.2E-12 56.3 3.2 29 19-47 1-29 (163)
460 cd02028 UMPK_like Uridine mono 98.5 1.7E-07 3.8E-12 56.8 3.5 35 15-49 1-40 (179)
461 PRK11860 bifunctional 3-phosph 98.5 2.3E-07 5.1E-12 65.5 4.6 41 12-54 441-481 (661)
462 TIGR00152 dephospho-CoA kinase 98.5 2.2E-07 4.7E-12 56.3 3.9 33 15-47 1-33 (188)
463 PLN03232 ABC transporter C fam 98.5 1.2E-07 2.6E-12 71.7 3.1 34 4-37 634-667 (1495)
464 PF05496 RuvB_N: Holliday junc 98.5 2.8E-07 6.1E-12 58.4 4.3 31 14-44 51-81 (233)
465 TIGR00956 3a01205 Pleiotropic 98.5 1.1E-07 2.5E-12 71.5 2.9 34 4-37 78-111 (1394)
466 PRK09270 nucleoside triphospha 98.5 2E-07 4.2E-12 58.2 3.6 27 11-37 31-57 (229)
467 COG1936 Predicted nucleotide k 98.5 2.2E-07 4.8E-12 56.8 3.6 32 14-46 1-32 (180)
468 TIGR00956 3a01205 Pleiotropic 98.5 1.2E-07 2.7E-12 71.3 3.0 34 4-37 780-813 (1394)
469 cd02026 PRK Phosphoribulokinas 98.5 2.5E-07 5.4E-12 59.5 4.0 33 15-47 1-36 (273)
470 PRK12339 2-phosphoglycerate ki 98.4 3.4E-07 7.3E-12 56.5 4.4 34 12-45 2-35 (197)
471 PTZ00243 ABC transporter; Prov 98.4 1.1E-07 2.5E-12 72.1 2.6 33 5-37 678-710 (1560)
472 COG0237 CoaE Dephospho-CoA kin 98.4 3.9E-07 8.4E-12 56.6 4.5 33 14-47 3-35 (201)
473 PRK14734 coaE dephospho-CoA ki 98.4 3.4E-07 7.4E-12 56.4 4.2 33 14-47 2-34 (200)
474 cd03271 ABC_UvrA_II The excisi 98.4 2.2E-07 4.7E-12 59.6 3.5 29 5-33 13-41 (261)
475 COG4778 PhnL ABC-type phosphon 98.4 2.3E-07 5E-12 57.5 3.3 34 4-37 28-61 (235)
476 PLN03140 ABC transporter G fam 98.4 1.4E-07 3E-12 71.4 2.9 34 4-37 897-930 (1470)
477 COG1137 YhbG ABC-type (unclass 98.4 7.1E-08 1.5E-12 60.6 1.1 31 4-34 21-51 (243)
478 PLN00020 ribulose bisphosphate 98.4 3.4E-07 7.5E-12 61.7 4.4 43 8-50 143-185 (413)
479 cd02027 APSK Adenosine 5'-phos 98.4 3.9E-07 8.5E-12 53.7 4.2 31 15-45 1-34 (149)
480 PF13555 AAA_29: P-loop contai 98.4 3.7E-07 8.1E-12 47.3 3.6 30 6-35 15-45 (62)
481 PLN02348 phosphoribulokinase 98.4 3.9E-07 8.4E-12 61.5 4.4 27 12-38 48-74 (395)
482 TIGR01257 rim_protein retinal- 98.4 1.9E-07 4.2E-12 72.6 3.4 33 4-36 1956-1988(2272)
483 TIGR01526 nadR_NMN_Atrans nico 98.4 2.4E-07 5.3E-12 60.8 3.4 36 7-42 154-191 (325)
484 PRK04220 2-phosphoglycerate ki 98.4 4.4E-07 9.4E-12 59.4 4.5 36 13-48 92-128 (301)
485 PF03215 Rad17: Rad17 cell cyc 98.4 4.4E-07 9.5E-12 63.0 4.7 32 12-43 44-75 (519)
486 cd03272 ABC_SMC3_euk Eukaryoti 98.4 2.4E-07 5.1E-12 57.8 3.1 22 13-34 23-44 (243)
487 PRK07429 phosphoribulokinase; 98.4 4.2E-07 9E-12 59.9 4.4 36 12-47 7-45 (327)
488 PRK07667 uridine kinase; Provi 98.4 5.2E-07 1.1E-11 55.1 4.4 35 13-47 17-56 (193)
489 cd03279 ABC_sbcCD SbcCD and ot 98.4 2.3E-07 5.1E-12 57.2 2.9 23 12-34 27-49 (213)
490 KOG0060|consensus 98.4 2.6E-07 5.7E-12 64.8 3.3 32 4-35 452-483 (659)
491 PRK14738 gmk guanylate kinase; 98.4 3.6E-07 7.8E-12 56.4 3.5 26 11-36 11-36 (206)
492 cd03282 ABC_MSH4_euk MutS4 hom 98.4 3.4E-07 7.3E-12 56.7 3.4 31 4-34 20-50 (204)
493 cd00071 GMPK Guanosine monopho 98.4 2.9E-07 6.2E-12 53.7 2.9 24 15-38 1-24 (137)
494 cd03240 ABC_Rad50 The catalyti 98.4 3.8E-07 8.2E-12 56.3 3.5 27 7-34 17-43 (204)
495 COG1101 PhnK ABC-type uncharac 98.4 3.4E-07 7.3E-12 58.2 3.3 34 4-37 23-56 (263)
496 TIGR00390 hslU ATP-dependent p 98.4 5.8E-07 1.3E-11 61.3 4.5 34 14-47 48-81 (441)
497 KOG0061|consensus 98.4 2.6E-07 5.6E-12 65.0 3.0 34 4-37 47-80 (613)
498 cd01672 TMPK Thymidine monopho 98.4 7E-07 1.5E-11 53.4 4.4 29 14-42 1-32 (200)
499 smart00763 AAA_PrkA PrkA AAA d 98.4 4.2E-07 9E-12 60.7 3.7 28 12-39 77-104 (361)
500 PTZ00451 dephospho-CoA kinase; 98.4 6.2E-07 1.3E-11 57.1 4.3 34 14-47 2-35 (244)
No 1
>PLN02165 adenylate isopentenyltransferase
Probab=99.26 E-value=6.7e-12 Score=82.65 Aligned_cols=50 Identities=38% Similarity=0.596 Sum_probs=45.3
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhccc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKL 60 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~ 60 (68)
.++++++|+||+|||||+|+..|++.++.++++.|+.++|+++++.+..+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakp 90 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQI 90 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCC
Confidence 45779999999999999999999999999999999999999999876544
No 2
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.26 E-value=3.3e-12 Score=81.66 Aligned_cols=35 Identities=34% Similarity=0.335 Sum_probs=31.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++++|++++|++++|+||||||||||++++++.+.
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46789999999999999999999999999997543
No 3
>PLN02748 tRNA dimethylallyltransferase
Probab=99.21 E-value=1.6e-11 Score=83.74 Aligned_cols=51 Identities=43% Similarity=0.573 Sum_probs=46.7
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhcccc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLE 61 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 61 (68)
.++.+++|+||+|||||+|+..||+.++.++++.|+.++|+++++.+..+.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt 70 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVP 70 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCC
Confidence 345789999999999999999999999999999999999999999887764
No 4
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=99.20 E-value=2.6e-11 Score=78.94 Aligned_cols=51 Identities=31% Similarity=0.344 Sum_probs=45.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhccccc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLEL 62 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 62 (68)
...++++|+||+|||||.|+-.||+. ..++++.|+.++|+++++.+.++..
T Consensus 2 ~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~ 52 (300)
T PRK14729 2 KENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSK 52 (300)
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCH
Confidence 45578999999999999999999999 5699999999999999998877643
No 5
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.19 E-value=2.8e-11 Score=68.20 Aligned_cols=32 Identities=38% Similarity=0.646 Sum_probs=30.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
+|+|.|++||||||+++.|++.++.++++.|+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 58999999999999999999999999999987
No 6
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.19 E-value=3e-11 Score=78.82 Aligned_cols=50 Identities=48% Similarity=0.616 Sum_probs=45.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhcccc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLE 61 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 61 (68)
+..+++|+||+|||||+++..|++.++.++++.|+.++|+++++.+..+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~ 52 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPT 52 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCC
Confidence 34689999999999999999999999999999999999999999876654
No 7
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.16 E-value=1.9e-11 Score=75.06 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.||.+.+|+.++|+||||||||||.+++|..
T Consensus 20 ~~isl~v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 20 NNISLSVRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cceeeeecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 567899999999999999999999999999943
No 8
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4.4e-11 Score=78.09 Aligned_cols=50 Identities=44% Similarity=0.539 Sum_probs=46.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhccccc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLEL 62 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 62 (68)
.+.++|+||++||||-++-.||++++.++++.|+.++|+++++.+.++..
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~ 52 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSL 52 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCH
Confidence 46899999999999999999999999999999999999999998877643
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=6.4e-11 Score=75.33 Aligned_cols=32 Identities=34% Similarity=0.386 Sum_probs=29.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+.++++.+|+.++|+||||||||||++.+|.
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999999999999994
No 10
>PRK08118 topology modulation protein; Reviewed
Probab=99.11 E-value=9.3e-11 Score=70.47 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=33.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhh
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGL 50 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~ 50 (68)
+.|+|+|++||||||+++.|++.++.++++.|...+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 4689999999999999999999999999999976543
No 11
>PLN02840 tRNA dimethylallyltransferase
Probab=99.10 E-value=9e-11 Score=79.29 Aligned_cols=51 Identities=49% Similarity=0.627 Sum_probs=46.2
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhcccc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLE 61 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 61 (68)
.++.+++|+||+||||||++..|++.++.++++.|+.++|+++++.+..+.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt 69 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPS 69 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCC
Confidence 445789999999999999999999999999999999999999998876664
No 12
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=99.10 E-value=8e-11 Score=76.28 Aligned_cols=48 Identities=48% Similarity=0.585 Sum_probs=43.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhccccc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLEL 62 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 62 (68)
+++|+||+|||||+|+..|++.++..+++.|+.++|+++++.+.++..
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~ 48 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSL 48 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCH
Confidence 378999999999999999999999999999999999999998876643
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.08 E-value=1.2e-10 Score=75.05 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=44.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC----------CeEEecCchhhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN----------GEIISADSMQGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~----------~~~~~~d~~~~~~~~~~~~~~~~~~ 63 (68)
+++++++++|+.++++|||||||||+++++.+... .++-+.|...+.+.++++-|...++
T Consensus 18 ~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF 87 (309)
T COG1125 18 DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF 87 (309)
T ss_pred eeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccC
Confidence 57899999999999999999999999999986542 2223444555666667666555444
No 14
>PRK07261 topology modulation protein; Provisional
Probab=99.06 E-value=2.2e-10 Score=68.99 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=32.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhh
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGL 50 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~ 50 (68)
+.++|+|++|||||||++.|++.++.++++.|...+.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 3689999999999999999999999999999876554
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.06 E-value=1.5e-10 Score=74.91 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++++|++++|+|||||||||++++|+...
T Consensus 22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 5689999999999999999999999999999543
No 16
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.06 E-value=1.3e-10 Score=77.00 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+++++++.+|+.+.|+|||||||||++++||.
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46889999999999999999999999999994
No 17
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.06 E-value=1.5e-10 Score=70.03 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|++++|+|+||||||||+++++..
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 18
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=6.5e-11 Score=74.62 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=30.0
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.++++++++++.+|+|||||||||+++++.+..
T Consensus 25 ~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 25 DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred cCceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 567889999999999999999999999998654
No 19
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.06 E-value=1.7e-10 Score=72.69 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=28.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
.+.++++.+|++++|+||||||||||++++.
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999999999999999998
No 20
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.06 E-value=3e-10 Score=67.03 Aligned_cols=38 Identities=37% Similarity=0.607 Sum_probs=34.4
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
|+++..++|+|++||||||+++.|++.++.++++.|..
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~ 38 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHL 38 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence 46778999999999999999999999999999988754
No 21
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.06 E-value=1.6e-10 Score=70.21 Aligned_cols=31 Identities=32% Similarity=0.345 Sum_probs=28.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
++.+|++.+|++++|+||||||||||++.+.
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4678999999999999999999999999886
No 22
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.05 E-value=1.5e-10 Score=73.55 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+++||++.+|+.++|+|+||||||||+++++.
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 57899999999999999999999999999993
No 23
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.05 E-value=1.5e-10 Score=71.11 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||+++|+..+
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3578999999999999999999999999999543
No 24
>PRK06217 hypothetical protein; Validated
Probab=99.05 E-value=2.6e-10 Score=68.95 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=33.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhh
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGL 50 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~ 50 (68)
+.|+|+|.+||||||+++.|++.++.++++.|...+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 4699999999999999999999999999999976543
No 25
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.05 E-value=1.7e-10 Score=72.67 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=29.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.++++++++|+.++|+||||||||||++.++.
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999999999999999983
No 26
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.05 E-value=1.3e-10 Score=66.69 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+++++.+|++++|+|+||||||||++.|+...
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccc
Confidence 3578899999999999999999999999998543
No 27
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.05 E-value=1.8e-10 Score=70.56 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.|+..+
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999999999543
No 28
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=99.04 E-value=4.5e-10 Score=70.60 Aligned_cols=52 Identities=33% Similarity=0.440 Sum_probs=39.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhcccccccC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLELLRL 65 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 65 (68)
++++|+||+|+|||.++-.+|++++++++..|..++|.++.+.+..+..-++
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el 53 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSEL 53 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHH
Confidence 4789999999999999999999999999999999999999887766554443
No 29
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=1.8e-10 Score=71.67 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999999543
No 30
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.04 E-value=1.8e-10 Score=76.04 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=29.1
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+++++.+|+.++|+|||||||||++++||.
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999999999999993
No 31
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.04 E-value=2e-10 Score=70.62 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||++.++..+
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999999999543
No 32
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.04 E-value=2.2e-10 Score=70.29 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.+|++.+|++++|+|+||||||||++.++..
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 33
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=2.4e-10 Score=70.15 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 34
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.03 E-value=2.4e-10 Score=70.48 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|++++|+|+||||||||++.|+..
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 35
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.03 E-value=2.3e-10 Score=69.96 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+||||||||||++.++..
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999999999954
No 36
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.03 E-value=2.3e-10 Score=70.73 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++++|++++|+|+||||||||++.++..
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999999999999943
No 37
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.03 E-value=2.5e-10 Score=71.14 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 38
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=2.4e-10 Score=70.02 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 39
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.02 E-value=2.6e-10 Score=70.23 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+|+||||||||+++++..
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 40
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.02 E-value=2.7e-10 Score=70.45 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=31.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||++.|+..+
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999999999999765
No 41
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.02 E-value=2.6e-10 Score=69.54 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.++..+
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999999999999543
No 42
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=2.8e-10 Score=70.65 Aligned_cols=34 Identities=32% Similarity=0.316 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.|+..+
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999999999999999543
No 43
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.02 E-value=3e-10 Score=69.55 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 44
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=2.5e-10 Score=70.46 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 45
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.01 E-value=2.8e-10 Score=70.08 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+..+|++.+|++++|+|+||||||||++.|+..
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999999999999954
No 46
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.01 E-value=2.6e-10 Score=69.95 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|++++|+|+||||||||++.|+..
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 357899999999999999999999999999854
No 47
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=3e-10 Score=70.67 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 48
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.01 E-value=2.8e-10 Score=69.70 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+++++.+|++++|+|+||||||||++.++..+
T Consensus 18 ~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999999999999999543
No 49
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.01 E-value=1.4e-10 Score=79.19 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.+++.+
T Consensus 352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 352 DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999999999999655
No 50
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.01 E-value=3.8e-10 Score=68.73 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=30.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.++|+|+|||||||+++.|++.++.++++.++.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~ 34 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDI 34 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHH
Confidence 3689999999999999999999999999987654
No 51
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.01 E-value=2.6e-10 Score=70.20 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999999999854
No 52
>PRK03839 putative kinase; Provisional
Probab=99.01 E-value=5.4e-10 Score=67.11 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=31.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCchh
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~ 48 (68)
.++|+|++||||||+++.|++.++.++++.|+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~ 35 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFA 35 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhh
Confidence 5899999999999999999999999999998654
No 53
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.01 E-value=2.9e-10 Score=70.64 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|+.++|+|+||||||||+++|+..
T Consensus 17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 457899999999999999999999999999954
No 54
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.01 E-value=3.3e-10 Score=69.47 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|+.++|+|+||||||||++.++..+
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999999999543
No 55
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=3.4e-10 Score=69.84 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 56
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.01 E-value=3.4e-10 Score=70.15 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 57
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.01 E-value=3.3e-10 Score=70.11 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|++++|+|+||||||||++.|+..+
T Consensus 27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 27 TGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999999999999999543
No 58
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.00 E-value=3.4e-10 Score=70.49 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999965
No 59
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.00 E-value=3.4e-10 Score=70.15 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||++.|+..+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999999999543
No 60
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.00 E-value=2.9e-10 Score=73.03 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=31.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++||++.+|++++|+|+|||||||+++.+.+..
T Consensus 30 d~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 30 DGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred cceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 5789999999999999999999999999998654
No 61
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=3.4e-10 Score=70.42 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+..+|++.+|++++|+|+||||||||+++|+..
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999999999999954
No 62
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.00 E-value=3.3e-10 Score=72.39 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=29.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+++|++.+|+.++|+||||||||||++.+..
T Consensus 21 ~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 21 EDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred eccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999999999999984
No 63
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=3.9e-10 Score=67.85 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=29.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+.+|++.+|++++|+|+||||||||++.++..
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999999999999954
No 64
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.3e-10 Score=71.79 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..+++++++|++.+|.||||||||||++.|+..
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999944
No 65
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=3.8e-10 Score=71.41 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 66
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=3.9e-10 Score=70.38 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|++++|+|+||||||||++.|+..
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999999999954
No 67
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.99 E-value=4.2e-10 Score=69.10 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.+|++.+|++++|+|+||||||||++.++..
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 68
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.99 E-value=4.2e-10 Score=69.84 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 24 NNISFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999999999999999953
No 69
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.99 E-value=4e-10 Score=70.20 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|++++|+|+||||||||++.|+..
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999999999954
No 70
>PRK10908 cell division protein FtsE; Provisional
Probab=98.99 E-value=4.3e-10 Score=69.47 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.|+..+
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999999999543
No 71
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.98 E-value=4.4e-10 Score=70.58 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 457889999999999999999999999999964
No 72
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.98 E-value=3e-10 Score=79.64 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.|++.+
T Consensus 470 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999999999655
No 73
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.98 E-value=4.6e-10 Score=68.36 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.++..
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 74
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=4.6e-10 Score=67.25 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.++++.+|+.++|+|+||||||||++.++..
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 75
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.98 E-value=4.4e-10 Score=72.58 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++|+..+
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999999543
No 76
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.98 E-value=5e-10 Score=68.56 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 77
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.98 E-value=3.2e-10 Score=78.21 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=31.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.|++.+
T Consensus 367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999999999999999765
No 78
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=4.8e-10 Score=69.98 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 79
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.98 E-value=5e-10 Score=68.85 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=29.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+..++++.+|++++|+|+||||||||++.|+..
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356788999999999999999999999999954
No 80
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.98 E-value=5.3e-10 Score=70.02 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+++|++.+|++++|+|+||||||||++.|+..+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 20 HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999999999999543
No 81
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.97 E-value=5.1e-10 Score=68.46 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.++..
T Consensus 17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999999999954
No 82
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.97 E-value=5.3e-10 Score=68.24 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+..++++.+|++++|+|+||||||||++.++...
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999999999999999543
No 83
>PRK14530 adenylate kinase; Provisional
Probab=98.97 E-value=1e-09 Score=67.81 Aligned_cols=35 Identities=26% Similarity=0.522 Sum_probs=31.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+..|+|+|++||||||+++.|++.++.++++.++.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~ 37 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDA 37 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHH
Confidence 45799999999999999999999999999987654
No 84
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=5.4e-10 Score=70.05 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|++++|+|+||||||||+++|+..+
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3578899999999999999999999999999653
No 85
>KOG0058|consensus
Probab=98.97 E-value=4.6e-10 Score=79.38 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=45.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC---Ce-------EEecCchhhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN---GE-------IISADSMQGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~---~~-------~~~~d~~~~~~~~~~~~~~~~~~ 63 (68)
.+.+|++++|++++++||||+||||++..|-+.+. +. +-+.|...+.+.+.++.|+|-++
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF 554 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLF 554 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceee
Confidence 36789999999999999999999999999987764 22 22333334556677777777654
No 86
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.97 E-value=5.6e-10 Score=69.96 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||++.|+..+
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4678999999999999999999999999999543
No 87
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=5.5e-10 Score=70.12 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||++.++..+
T Consensus 21 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 21 KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4578999999999999999999999999999653
No 88
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.97 E-value=5.8e-10 Score=69.40 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.+|++.+|++++|+|+||||||||+++|+..
T Consensus 20 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred eceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 457899999999999999999999999999954
No 89
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.97 E-value=5.8e-10 Score=69.46 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
...+|++.+|++++|+|+||||||||+++++..
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 90
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.97 E-value=5.7e-10 Score=66.50 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.++++.+|++++|+|+||||||||++.++..
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999999999999954
No 91
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=5.9e-10 Score=68.97 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|++++|+||||||||||+++|+...
T Consensus 20 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3578999999999999999999999999999543
No 92
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=5.7e-10 Score=69.74 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|++++|+|+||||||||+++|+..
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999999999999954
No 93
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=5.7e-10 Score=69.83 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 94
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.96 E-value=6.1e-10 Score=68.56 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.+|++.+|++++|+||||||||||++.|+..
T Consensus 21 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999999999999954
No 95
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.96 E-value=5.8e-10 Score=69.57 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||++.++..+
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999999999543
No 96
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.96 E-value=5.8e-10 Score=70.48 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||++.|+..+
T Consensus 30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3578999999999999999999999999999653
No 97
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.96 E-value=5.5e-10 Score=70.13 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++++...
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999999543
No 98
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.96 E-value=5.8e-10 Score=67.28 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+++++.+|+.++|+|+||||||||++.++..+
T Consensus 17 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999999543
No 99
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.96 E-value=4.4e-10 Score=77.35 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=31.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.+++.+
T Consensus 360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4678899999999999999999999999999765
No 100
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.96 E-value=6.8e-10 Score=66.34 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+..++++.+|++++|+|+||||||||++.++..+
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999999999999999543
No 101
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.96 E-value=5.6e-10 Score=70.40 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||++.|+...
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999999999999999999999999999643
No 102
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=5.4e-10 Score=67.99 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=29.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+.+++++.+|++++|+|+||||||||++.++.
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35678999999999999999999999999995
No 103
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.96 E-value=5.8e-10 Score=70.85 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||++.|+..+
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999999999999543
No 104
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.96 E-value=5.7e-10 Score=70.08 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 105
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=6.4e-10 Score=70.18 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.|+...
T Consensus 29 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 29 KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568899999999999999999999999999654
No 106
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.96 E-value=6.5e-10 Score=68.67 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++|++.+|++++|+|+||||||||+++|+..+
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999999999553
No 107
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.96 E-value=6.3e-10 Score=69.19 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||++.|+...
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999999999999999543
No 108
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.96 E-value=6.2e-10 Score=69.57 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 109
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=6.5e-10 Score=68.96 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|++++|+|+||||||||++.|+..+
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4578899999999999999999999999999543
No 110
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=6.5e-10 Score=69.41 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..+++++.+|++++|+|+||||||||++.|+..
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 19 FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999999999954
No 111
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=7.2e-10 Score=66.31 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|+.++|+|+||||||||++.++..+
T Consensus 19 ~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999999999999999999543
No 112
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.96 E-value=6.5e-10 Score=66.79 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.0
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++++.+|++++|+|+||||||||++.++...
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 568999999999999999999999999999543
No 113
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.96 E-value=6.3e-10 Score=71.88 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 114
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.95 E-value=6.6e-10 Score=69.67 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999999999999999953
No 115
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=6.5e-10 Score=69.69 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.+|++.+|++++|+|+||||||||+++|+..
T Consensus 20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred eeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999999999999999954
No 116
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=7e-10 Score=69.75 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++++..+
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 24 NNINIKILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4678999999999999999999999999999644
No 117
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.95 E-value=6.8e-10 Score=70.38 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999999999543
No 118
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.95 E-value=7.3e-10 Score=68.24 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.+|++.+|++++|+|+||||||||+++|+..
T Consensus 21 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred cceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999999999999954
No 119
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.95 E-value=6.9e-10 Score=67.54 Aligned_cols=31 Identities=35% Similarity=0.354 Sum_probs=29.1
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++.+|++++|+|+||||||||+++++..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 7889999999999999999999999999954
No 120
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=5.7e-10 Score=68.42 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.|+..+
T Consensus 24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred eeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 3578899999999999999999999999999653
No 121
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.95 E-value=7e-10 Score=69.55 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++|+..
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 467899999999999999999999999999853
No 122
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.95 E-value=6.6e-10 Score=72.06 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++|+..+
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999999999999999543
No 123
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.95 E-value=6.5e-10 Score=70.69 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.|+...
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999999543
No 124
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=7.5e-10 Score=69.55 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++.+|++++|+|+||||||||++.|+..+
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3568899999999999999999999999999654
No 125
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.95 E-value=7e-10 Score=65.08 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=29.9
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..+|++.+|++++|+|+||||||||+++++..+
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 568899999999999999999999999998543
No 126
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=7.3e-10 Score=70.51 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 30 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999999999999999964
No 127
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=6.7e-10 Score=70.61 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 457899999999999999999999999999854
No 128
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=7.7e-10 Score=67.81 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=30.2
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..+|++.+|++++|+|+||||||||+++++..+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999999999999543
No 129
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=7.7e-10 Score=70.18 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+|+||||||||+++|+..
T Consensus 38 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999999999999999864
No 130
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=6.7e-10 Score=70.41 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 357899999999999999999999999999954
No 131
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.94 E-value=8.3e-10 Score=66.51 Aligned_cols=34 Identities=32% Similarity=0.358 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++.+|++++|+|+||||||||++.++...
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999999999543
No 132
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.94 E-value=8.3e-10 Score=67.43 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++++|++++|+|+||||||||++.++..
T Consensus 22 ~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 357889999999999999999999999999954
No 133
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.94 E-value=7.5e-10 Score=68.61 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||++.|+..+
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3578899999999999999999999999998543
No 134
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.94 E-value=7.8e-10 Score=70.24 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||++.|+..+
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999999999543
No 135
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.94 E-value=5.5e-10 Score=73.11 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=32.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++||++.+|++++|+|.|||||||+++++.+.+.
T Consensus 22 ~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred eceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 57899999999999999999999999999998775
No 136
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.94 E-value=4.6e-10 Score=79.30 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=31.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++.++++++|+.++|+|+|||||||+++.|++.+.
T Consensus 498 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 35789999999999999999999999999997653
No 137
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.94 E-value=7.1e-10 Score=69.51 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 24 KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred ecceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 357899999999999999999999999999863
No 138
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.94 E-value=4.7e-10 Score=77.47 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=31.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++.++++++|+.++|+|+||||||||++.+++.+.
T Consensus 358 ~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 46789999999999999999999999999997653
No 139
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.94 E-value=8.5e-10 Score=68.03 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.++..
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 140
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.94 E-value=8.2e-10 Score=68.70 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+++++.+|++++|+|+||||||||++.|+..+
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 19 DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4578899999999999999999999999999543
No 141
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.94 E-value=7.4e-10 Score=70.50 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+|+||||||||++.|+..
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 142
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=6.8e-10 Score=69.16 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++++..
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 22 HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 457899999999999999999999999999854
No 143
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.94 E-value=7.8e-10 Score=69.95 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 19 DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 144
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=8e-10 Score=72.31 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+...
T Consensus 24 ~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 4678999999999999999999999999999654
No 145
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.94 E-value=7.8e-10 Score=69.76 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|++++|+|+||||||||++.|+..+
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999999543
No 146
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.94 E-value=9e-10 Score=67.34 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+++++.+|++++|+|+||||||||++.|+..+
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999999543
No 147
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=8.3e-10 Score=69.40 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.++..
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 356889999999999999999999999999953
No 148
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.93 E-value=8.1e-10 Score=68.65 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.++..
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999999999999954
No 149
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=7.5e-10 Score=71.00 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||+++|+..+
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999999999999543
No 150
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=8.5e-10 Score=70.21 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999999999999543
No 151
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.93 E-value=8.9e-10 Score=67.88 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 18 SNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999999999999999954
No 152
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=9.1e-10 Score=69.10 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 456889999999999999999999999999854
No 153
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=7.5e-10 Score=69.52 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.++++.+|++++|+|+||||||||+++|+..
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999954
No 154
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=5.7e-10 Score=70.96 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..+++++++|+.++|+|+||||||||+++++..
T Consensus 21 ~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 21 KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc
Confidence 357899999999999999999999999999853
No 155
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.93 E-value=8.6e-10 Score=68.78 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++|+..
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 156
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=8.4e-10 Score=69.28 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++|++.+|++++|+|+||||||||++.|+..
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 357899999999999999999999999999853
No 157
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.93 E-value=9.7e-10 Score=65.85 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=29.8
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++++.+|++++|+|+||||||||++.|+..+
T Consensus 20 ~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 20 NVSFSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467889999999999999999999999999643
No 158
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=9.1e-10 Score=69.15 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999999999999999965
No 159
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=7.8e-10 Score=67.78 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=28.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.+|++.+| +++|+|+||||||||++.++..
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999 9999999999999999999954
No 160
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=8e-10 Score=70.47 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 161
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=8.3e-10 Score=72.23 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=31.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||++.|+..+
T Consensus 24 ~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 24 DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4678999999999999999999999999999654
No 162
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.93 E-value=8.5e-10 Score=69.77 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++|++.+|++++|+|+||||||||+++|+..
T Consensus 21 ~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 21 SDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999999999999954
No 163
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=9.8e-10 Score=68.86 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+++|++.+|++++|+|+||||||||+++|+...
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 20 KSINLPIPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred ecceEEecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999999999998643
No 164
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=9.9e-10 Score=68.87 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4578999999999999999999999999999653
No 165
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.93 E-value=4.3e-10 Score=79.88 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=31.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++.++++++|+.++|+|+||||||||++.+...+.
T Consensus 490 ~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred hceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45689999999999999999999999999996553
No 166
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.93 E-value=9.9e-10 Score=69.78 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||++.|+...
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999999999999654
No 167
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.93 E-value=9.1e-10 Score=70.43 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.|+..+
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999999999543
No 168
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.93 E-value=2.4e-09 Score=64.51 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=32.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.+.|+|+|++||||||+++.+++.++.++++.|..
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~ 38 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE 38 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCch
Confidence 456899999999999999999999999999998863
No 169
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.93 E-value=9.5e-10 Score=69.86 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+++++.+|++++|+|+||||||||++.|+..+
T Consensus 37 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578999999999999999999999999999654
No 170
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=9.4e-10 Score=69.46 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999999999999954
No 171
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=1e-09 Score=68.89 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+++++.+|++++|+|+||||||||++.|+..+
T Consensus 21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 21 HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3578899999999999999999999999999653
No 172
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.92 E-value=9.3e-10 Score=72.46 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++|+..+
T Consensus 58 ~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 58 NGLSFTVASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4678999999999999999999999999999543
No 173
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.92 E-value=7e-10 Score=75.74 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.+++.+
T Consensus 339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999999999655
No 174
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.92 E-value=4.1e-10 Score=79.21 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.|++.+
T Consensus 491 ~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4678999999999999999999999999999655
No 175
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=9.2e-10 Score=70.61 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+|+||||||||+++|+..
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 24 HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999999999999954
No 176
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.92 E-value=1e-09 Score=67.79 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|++++|+|+||||||||++.++..+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999999999543
No 177
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.92 E-value=1.1e-09 Score=67.73 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+++++.+|++++|+|+||||||||++.++...
T Consensus 31 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 31 QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4567899999999999999999999999999543
No 178
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.92 E-value=1.2e-09 Score=66.88 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+..+|++.+|++++|+|+||||||||++.++..
T Consensus 17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999964
No 179
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.92 E-value=8.6e-10 Score=75.94 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=42.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCC---eEEecCch--------hhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNG---EIISADSM--------QGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~---~~~~~d~~--------~~~~~~~~~~~~~~~~ 63 (68)
++.+|.+++|+.++|+|+|||||||+++.+.+.+.. .+.- |+. .+.+.+.+.+|++..+
T Consensus 346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-dg~dI~~i~~~~lr~~I~~V~Qd~~LF 415 (567)
T COG1132 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-DGIDIRDISLDSLRKRIGIVSQDPLLF 415 (567)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE-CCEehhhcCHHHHHHhccEEcccceee
Confidence 467899999999999999999999999999977643 2221 332 3345566666665544
No 180
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=9.4e-10 Score=72.34 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999999999999999543
No 181
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.92 E-value=9.8e-10 Score=69.66 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred eecceEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4678999999999999999999999999999543
No 182
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=9.8e-10 Score=70.59 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|+.++|+|+||||||||+++|+..
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 357899999999999999999999999999954
No 183
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.92 E-value=1.1e-09 Score=68.99 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+..++++.+|++++|+|+||||||||++.|+..
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 184
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=1.1e-09 Score=69.63 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.++++.+|++++|+|+||||||||++.|+..
T Consensus 26 ~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999999999999954
No 185
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.92 E-value=4.5e-10 Score=79.00 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.|+..+
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999999999655
No 186
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.92 E-value=1.1e-09 Score=69.21 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||++.|+..+
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4678899999999999999999999999999654
No 187
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=9.8e-10 Score=71.33 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|+.++|+|+||||||||+++|+..
T Consensus 24 ~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 24 DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 367899999999999999999999999999954
No 188
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=1.1e-09 Score=69.04 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999999999954
No 189
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=1e-09 Score=70.25 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||+++|+..+
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 24 NDISFSIPRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 4578899999999999999999999999999654
No 190
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=1.1e-09 Score=68.13 Aligned_cols=32 Identities=31% Similarity=0.328 Sum_probs=29.8
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++|++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999999999999854
No 191
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=1.1e-09 Score=69.84 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 37 ~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 37 VDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999999999999999954
No 192
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.91 E-value=1e-09 Score=68.57 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|++++|+|+||||||||++.|+..
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 457889999999999999999999999999965
No 193
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=1.2e-09 Score=67.88 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=29.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
...++++.+|++++|+|+||||||||++.|+..
T Consensus 18 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356889999999999999999999999999954
No 194
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=1.1e-09 Score=69.99 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++|+..
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 19 ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999999999999999954
No 195
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.91 E-value=7.2e-10 Score=76.66 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.+++.+
T Consensus 357 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 357 KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999999999999999654
No 196
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=1.1e-09 Score=69.92 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+++|++.+|++++|+|+||||||||+++|+..
T Consensus 21 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 21 NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred eEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999999999999999954
No 197
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=1.3e-09 Score=68.49 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.++++.+|++++|+|+||||||||++.|+..
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 21 NDINLPIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 356889999999999999999999999999964
No 198
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.91 E-value=1.3e-09 Score=69.17 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++++++.+|++++|+|+||||||||+++|+..
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999999999999954
No 199
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.91 E-value=1.4e-09 Score=66.60 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.++++.+|+.++|+|+||||||||+++|+..
T Consensus 25 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 25 KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356889999999999999999999999999854
No 200
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=1.1e-09 Score=70.28 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|++++|+|+||||||||+++|+..
T Consensus 24 ~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 24 DNISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999999999999954
No 201
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.91 E-value=1.1e-09 Score=68.95 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++++..
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 467899999999999999999999999999854
No 202
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.91 E-value=7.8e-10 Score=76.44 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.+++.+
T Consensus 352 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4578899999999999999999999999999654
No 203
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.91 E-value=1.2e-09 Score=68.81 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||++.++..+
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999999999553
No 204
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=1.3e-09 Score=68.40 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|++++|+|+||||||||++.|+..+
T Consensus 21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 21 KNINMDFPERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4678899999999999999999999999999654
No 205
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=1.3e-09 Score=68.39 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+.++++.+|++++|+|+||||||||+++++..
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 19 FDINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356889999999999999999999999999964
No 206
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=1.2e-09 Score=69.74 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||+++|+..+
T Consensus 22 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 22 KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4578899999999999999999999999999543
No 207
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=1.2e-09 Score=69.47 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||++.|+...
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 26 KNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999999999999999543
No 208
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.90 E-value=1.3e-09 Score=69.36 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||++.|+..+
T Consensus 41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999999999999654
No 209
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.90 E-value=1.2e-09 Score=68.87 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 357889999999999999999999999999954
No 210
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.90 E-value=7e-10 Score=77.92 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=31.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.+++.+
T Consensus 482 ~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678999999999999999999999999999655
No 211
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.90 E-value=1.4e-09 Score=67.92 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999999999999954
No 212
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.4e-09 Score=72.07 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=29.7
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..+|++.+|++++|+||||||||||+++|+..
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 57899999999999999999999999999954
No 213
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.3e-09 Score=69.50 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..+++++.+|++++|+|+||||||||+++|+..
T Consensus 19 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 19 KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999854
No 214
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.3e-09 Score=69.67 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||++.++..+
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 24 NDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678999999999999999999999999999543
No 215
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.89 E-value=1.3e-09 Score=71.92 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+...
T Consensus 22 ~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999999999999999543
No 216
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.89 E-value=1.2e-09 Score=70.56 Aligned_cols=33 Identities=27% Similarity=0.200 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+..+|++.+|++++|+||||||||||+++++..
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 217
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.89 E-value=1.5e-09 Score=69.06 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 218
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.4e-09 Score=70.02 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+|+||||||||++.|+..
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 24 YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 467899999999999999999999999999954
No 219
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.4e-09 Score=72.25 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+||||||||||+++|+..
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 367899999999999999999999999999954
No 220
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.4e-09 Score=69.91 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|+.++|+|+||||||||++.|+..
T Consensus 23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 467899999999999999999999999999954
No 221
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.5e-09 Score=68.51 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+.++++.+|++++|+|+||||||||++.|+..+
T Consensus 24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999999999999999653
No 222
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.89 E-value=1.3e-09 Score=71.43 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=31.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4678999999999999999999999999999654
No 223
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.4e-09 Score=69.57 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+|+||||||||+++|+..
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 467899999999999999999999999999954
No 224
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.89 E-value=1.6e-09 Score=66.10 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+..++++.+|++++|+|+||||||||++.++..+
T Consensus 26 ~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999999999654
No 225
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=1.5e-09 Score=68.63 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=31.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+.+++++..|+.++|+||||+|||||++.|+..+.
T Consensus 18 ~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 18 DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred cCcceeccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence 56889999999999999999999999999996553
No 226
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.89 E-value=1.5e-09 Score=66.76 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..+++++.+|++++|+|+||||||||++.++..
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999999999999954
No 227
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.89 E-value=1.5e-09 Score=69.18 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++|+..
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 228
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=1.6e-09 Score=71.70 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+||||||||||+++|+..
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 457899999999999999999999999999954
No 229
>PRK14532 adenylate kinase; Provisional
Probab=98.88 E-value=3.1e-09 Score=64.11 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=30.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++|+|++||||||+++.|++.++..+++.++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~ 34 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDM 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHH
Confidence 588999999999999999999999999988754
No 230
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.6e-09 Score=68.57 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 457889999999999999999999999999854
No 231
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.6e-09 Score=69.60 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999999999963
No 232
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.88 E-value=1.7e-09 Score=66.73 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 22 ~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 22 FDINLEINPGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999999999954
No 233
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.88 E-value=2e-09 Score=61.94 Aligned_cols=33 Identities=33% Similarity=0.676 Sum_probs=29.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+++++|++||||||+++.+++.++..+++.|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~ 33 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEI 33 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHH
Confidence 578999999999999999999999888877754
No 234
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.88 E-value=2.2e-09 Score=64.19 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.++++|+|++||||||+++.+++.++..+++.++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~ 36 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGD 36 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHH
Confidence 4689999999999999999999999999887764
No 235
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.7e-09 Score=68.89 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+++|++.+|++++|+|+||||||||+++++..
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 356889999999999999999999999999865
No 236
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.88 E-value=1.1e-09 Score=75.20 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.++..+
T Consensus 357 ~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578999999999999999999999999999665
No 237
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=1.7e-09 Score=70.83 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||+++|+..+
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 4578999999999999999999999999999643
No 238
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.8e-09 Score=67.66 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+|+||||||||+++|+..
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999999999999854
No 239
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.88 E-value=1.7e-09 Score=71.01 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 5689999999999999999999999999999543
No 240
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.8e-09 Score=69.38 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|++++|+|+||||||||++.|+..+
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4578999999999999999999999999999553
No 241
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.87 E-value=1.8e-09 Score=61.31 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=28.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
..+++++.+++.++|+||||||||||++.+.
T Consensus 6 ~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 6 HGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3567889999999999999999999999987
No 242
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=2.2e-09 Score=66.85 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+..++++.+|++++|+|+||||||||+++|+..+
T Consensus 17 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567889999999999999999999999999553
No 243
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.87 E-value=2e-09 Score=68.52 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|+.++|+|.||||||||++.|+..+
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 4679999999999999999999999999999543
No 244
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=1.9e-09 Score=68.97 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.++..
T Consensus 27 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 27 DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999999999954
No 245
>PRK13947 shikimate kinase; Provisional
Probab=98.87 E-value=3.8e-09 Score=62.67 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.|+|+|++||||||+++.|++.+++++++.|..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~ 35 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE 35 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh
Confidence 589999999999999999999999999988864
No 246
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2e-09 Score=74.71 Aligned_cols=60 Identities=20% Similarity=0.170 Sum_probs=45.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC---Ce-------EEecCchhhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN---GE-------IISADSMQGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~---~~-------~~~~d~~~~~~~~~~~~~~~~~~ 63 (68)
+..++++++|+.++|+|+|||||||+++.++..+. +. .-+.+...|++++.+.+|.+..+
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf 407 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF 407 (559)
T ss_pred CCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccc
Confidence 46788999999999999999999999999995432 11 22344446777788877776554
No 247
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=2e-09 Score=68.83 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.|+..+
T Consensus 38 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4678999999999999999999999999999543
No 248
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.87 E-value=1.8e-09 Score=71.38 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=29.6
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++|++.+|++++|+||||||||||+++|+..
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 57899999999999999999999999999954
No 249
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.87 E-value=1.8e-09 Score=71.40 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+||||||||||+++|+..
T Consensus 19 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 250
>PRK00625 shikimate kinase; Provisional
Probab=98.87 E-value=3.2e-09 Score=64.34 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=31.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCchh
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~ 48 (68)
.|+|+|.+||||||+++.+++.++.++++.|...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I 35 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLI 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHH
Confidence 5899999999999999999999999999998653
No 251
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.87 E-value=3.2e-09 Score=63.61 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=30.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+++|+|++||||||+++.|++.++..+++.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~ 33 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDL 33 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChH
Confidence 478999999999999999999999999988754
No 252
>PRK13949 shikimate kinase; Provisional
Probab=98.87 E-value=3.5e-09 Score=63.73 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=31.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.++|+|++||||||+++.|++.++.++++.|..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~ 35 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFF 35 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHH
Confidence 4689999999999999999999999999999864
No 253
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=2e-09 Score=68.28 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 4578999999999999999999999999998654
No 254
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.87 E-value=2.3e-10 Score=72.73 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=31.7
Q ss_pred ccccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 3 SSFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 3 ~~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
-++++|++.+|++++|+|||||||||+.+++...+
T Consensus 20 l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~ 54 (250)
T COG0411 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY 54 (250)
T ss_pred EeceeEEEcCCeEEEEECCCCCCceeeeeeecccc
Confidence 36889999999999999999999999999998544
No 255
>PLN02200 adenylate kinase family protein
Probab=98.86 E-value=5e-09 Score=66.01 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=33.9
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.+....+++|+|++||||||+++.|++.++..+++.++.
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdl 77 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDL 77 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHH
Confidence 3344457899999999999999999999999999988654
No 256
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.86 E-value=1.8e-09 Score=71.75 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=31.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+...
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4678999999999999999999999999999543
No 257
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.86 E-value=2.4e-09 Score=66.62 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|.+++|+.+.|+||||||||||++.|...
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999999999999999854
No 258
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=2.3e-09 Score=67.87 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+++|++.+|++++|+|+||||||||++.++...
T Consensus 24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 3578999999999999999999999999999653
No 259
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.86 E-value=5.2e-09 Score=65.89 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=32.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchh
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~ 48 (68)
...++|+||+||||||+++.|++.++.++++.++..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdll 41 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNIL 41 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHH
Confidence 356999999999999999999999999999998764
No 260
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=2.2e-09 Score=68.83 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||+++|+..+
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 23 KGININIKKGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999999999999543
No 261
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=2.1e-09 Score=70.24 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||+++|+..+
T Consensus 43 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 43 NNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999999543
No 262
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.86 E-value=2.1e-09 Score=72.97 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++++..+
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4678999999999999999999999999999543
No 263
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.86 E-value=2.7e-09 Score=64.89 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=32.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+.++++|+.||||||+.+.||+.++.+++|.|..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~ 36 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE 36 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH
Confidence 35789999999999999999999999999999865
No 264
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.86 E-value=1.4e-09 Score=74.55 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.|++.+
T Consensus 349 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred cCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4678899999999999999999999999999665
No 265
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.86 E-value=2.1e-09 Score=74.40 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=31.7
Q ss_pred ccccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 3 SSFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 3 ~~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
-+.+||++.+|++++|+|+|||||||+++.++...
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999999999999999999999999999543
No 266
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.85 E-value=1.7e-09 Score=74.31 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.++..+
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999999999654
No 267
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.85 E-value=3.6e-09 Score=66.39 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=31.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+.+|+++++|.+..|+||||+|||||+..+++.+.
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~ 52 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK 52 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhcc
Confidence 46788999999999999999999999999987653
No 268
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.85 E-value=2.1e-09 Score=72.29 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||++.|+..+
T Consensus 20 ~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4678999999999999999999999999999543
No 269
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=2.4e-09 Score=68.41 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|++++|+|+||||||||+++|+..+
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 24 NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4678999999999999999999999999999543
No 270
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.85 E-value=4.5e-09 Score=63.66 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=27.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
|.+++|+|||||||||+++.|+..++..+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~ 34 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAH 34 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcC
Confidence 578999999999999999999987766655444
No 271
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.85 E-value=1.1e-09 Score=75.35 Aligned_cols=34 Identities=18% Similarity=0.503 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.+++.+
T Consensus 340 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 340 GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999999654
No 272
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.85 E-value=2.4e-09 Score=70.67 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=29.6
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++|++.+|++++|+||||||||||+++|+..
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999999999999954
No 273
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.85 E-value=3.7e-09 Score=62.46 Aligned_cols=32 Identities=31% Similarity=0.731 Sum_probs=29.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 16 FVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 16 i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++|+|++||||||+++.+++.++..+++.|+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccc
Confidence 47899999999999999999999999988875
No 274
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.85 E-value=2.4e-09 Score=73.20 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||++.|+..
T Consensus 17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 467899999999999999999999999999965
No 275
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.85 E-value=2e-09 Score=73.40 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+...
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 4678999999999999999999999999998543
No 276
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=2.8e-09 Score=62.81 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=29.6
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++++.+|+.++|+|+||+|||||++.++..+
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999999998543
No 277
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.84 E-value=2.4e-09 Score=71.37 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=29.6
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+++++.+|++++|+||||||||||+++|+..
T Consensus 32 ~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 32 NLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 57899999999999999999999999999953
No 278
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=2.6e-09 Score=65.64 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=29.1
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++|++.+ ++++|+|+||||||||++.++..+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999 999999999999999999999543
No 279
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.84 E-value=2.7e-09 Score=68.73 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+++++.+|++++|+|+||||||||+++|+..+
T Consensus 54 ~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 54 KNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999999999543
No 280
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.84 E-value=3e-09 Score=64.68 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=27.3
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++++|++++|+|+||||||||+++++..
T Consensus 19 ~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 19 LGVVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CcEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 367899999999999999999999999954
No 281
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.84 E-value=4e-09 Score=60.77 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=29.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
+++|.|++||||||+++.|++.++.++++.|.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~ 32 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGG 32 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceecccc
Confidence 47899999999999999999999999998873
No 282
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.84 E-value=2.6e-09 Score=70.46 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=29.9
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..+|++.+|++++|+||||||||||+++|+...
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999999999543
No 283
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=2.3e-09 Score=72.02 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++.+|++++|+|+||||||||+++|+..+
T Consensus 45 ~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~ 78 (400)
T PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred EeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4678999999999999999999999999999543
No 284
>KOG0055|consensus
Probab=98.84 E-value=3.3e-09 Score=78.44 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=46.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCe--EEecCc--------hhhhchhhhhhccccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGE--IISADS--------MQGLKFLVECRVKLELLR 64 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~--~~~~d~--------~~~~~~~~~~~~~~~~~~ 64 (68)
++.++++++|+.++|+|||||||||+...|-+.++.. .+..|+ ..+.+++.++.|+|.++.
T Consensus 1007 ~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~ 1077 (1228)
T KOG0055|consen 1007 NNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN 1077 (1228)
T ss_pred cCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhc
Confidence 4678899999999999999999999999999887421 122222 244567888888887653
No 285
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=2.8e-09 Score=66.51 Aligned_cols=33 Identities=39% Similarity=0.442 Sum_probs=29.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.++++.+|++++|+|+||||||||+++|+..
T Consensus 16 ~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999999999999854
No 286
>PRK13948 shikimate kinase; Provisional
Probab=98.84 E-value=7.1e-09 Score=63.33 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=33.0
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+...|+|+|.+||||||+++.|++.++.++++.|..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ 44 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRY 44 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHH
Confidence 458899999999999999999999999999999854
No 287
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2.8e-09 Score=73.09 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++|+..
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 288
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.84 E-value=1.9e-09 Score=67.70 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=31.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++|++.+|++.+|.|+||+||||+++.|+..+
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHhc
Confidence 4689999999999999999999999999999655
No 289
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.84 E-value=2.4e-09 Score=73.01 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++++..+
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999999999543
No 290
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.84 E-value=1.8e-09 Score=74.61 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.++..+
T Consensus 332 ~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred cCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3578899999999999999999999999999654
No 291
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2.5e-09 Score=72.93 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 312 (510)
T PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 292
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2.7e-09 Score=74.87 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|.+++|+|+||||||||+++|+..
T Consensus 18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~ 50 (638)
T PRK10636 18 DNATATINPGQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999954
No 293
>PRK14527 adenylate kinase; Provisional
Probab=98.84 E-value=4e-09 Score=64.07 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=33.1
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++++++|+|++||||||+++.|++.++..+++.++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~ 40 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDI 40 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHH
Confidence 4678999999999999999999999999998877654
No 294
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=2.4e-09 Score=73.09 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++|+..+
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999999999543
No 295
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=3e-09 Score=68.90 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.|+..+
T Consensus 62 ~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3578999999999999999999999999999553
No 296
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.84 E-value=2.9e-09 Score=70.70 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+||||||||||+++|+..
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999953
No 297
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.83 E-value=5e-09 Score=64.38 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=30.0
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcC---CeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFN---GEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~---~~~~~~d~~ 47 (68)
+++.+++|+|+||||||||++.|+..+. ..++..|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 5688999999999999999999997764 345666654
No 298
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.83 E-value=2.9e-09 Score=66.43 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=25.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLG 30 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~ 30 (68)
++++|++++|++++|+|+||||||||+
T Consensus 12 ~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 12 KNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 468999999999999999999999996
No 299
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.83 E-value=3e-09 Score=73.41 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999999999543
No 300
>PRK14531 adenylate kinase; Provisional
Probab=98.83 E-value=6.3e-09 Score=62.95 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=30.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.++|+|++||||||+++.|++.++..+++.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~ 36 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDL 36 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccH
Confidence 4689999999999999999999999999988654
No 301
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.83 E-value=2.8e-09 Score=73.04 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||++.|+..+
T Consensus 26 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4678999999999999999999999999999654
No 302
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.83 E-value=5.6e-09 Score=60.89 Aligned_cols=33 Identities=33% Similarity=0.741 Sum_probs=29.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+++|.|++||||||+++.+++.++..+++.|..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~ 33 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDL 33 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCccc
Confidence 478999999999999999999999988888765
No 303
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=3e-09 Score=70.91 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=29.6
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++|++.+|++++|+||||||||||+++|+..
T Consensus 37 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 57899999999999999999999999999944
No 304
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=3.4e-09 Score=67.11 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+++|++.+|++++|+|+||||||||++.|+..
T Consensus 27 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 27 KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999954
No 305
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.83 E-value=7.5e-09 Score=62.69 Aligned_cols=36 Identities=31% Similarity=0.641 Sum_probs=31.4
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.|++++|+|+|||||||+++.++..++..+++.|..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence 478999999999999999999999888877766653
No 306
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.82 E-value=3.1e-09 Score=72.32 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+...
T Consensus 18 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 18 DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred cceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999999999543
No 307
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.82 E-value=3.2e-09 Score=72.63 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 28 KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999999999543
No 308
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.82 E-value=3.7e-09 Score=66.80 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++|++.+|++++|+|+||||||||+++|+..+
T Consensus 38 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 38 KHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred eEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 3567899999999999999999999999999643
No 309
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.82 E-value=3.2e-09 Score=72.09 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++++..
T Consensus 277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 457899999999999999999999999999853
No 310
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.82 E-value=2.6e-09 Score=75.17 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.++..+
T Consensus 474 ~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999999999654
No 311
>PRK06547 hypothetical protein; Provisional
Probab=98.82 E-value=6.5e-09 Score=62.92 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=32.2
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
....+++|.|++||||||+++.|++.++.++++.|++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~ 49 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDL 49 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccce
Confidence 3456889999999999999999999999998888864
No 312
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.82 E-value=4.2e-09 Score=67.64 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 21 ~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 21 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 4578999999999999999999999999999654
No 313
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.82 E-value=3.4e-09 Score=74.14 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 33 ~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 33 RNLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred EeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3678999999999999999999999999999654
No 314
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.82 E-value=3.4e-09 Score=70.94 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=31.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+..+
T Consensus 41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~ 74 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN 74 (382)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4678999999999999999999999999999644
No 315
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.82 E-value=4.1e-09 Score=66.65 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=29.3
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.++|++++|++++++|+||+||||+++.++.
T Consensus 21 gvsl~v~~Geiv~llG~NGaGKTTlLkti~G 51 (237)
T COG0410 21 GVSLEVERGEIVALLGRNGAGKTTLLKTIMG 51 (237)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999999999999984
No 316
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.81 E-value=3.4e-09 Score=74.20 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 20 ~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred eCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 367899999999999999999999999999954
No 317
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.81 E-value=5.8e-09 Score=60.66 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=30.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++|+|++||||||+++.+++.+++++++.|..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~ 33 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDEL 33 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHH
Confidence 378999999999999999999999999988854
No 318
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=4.3e-09 Score=69.12 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=29.2
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+++++++.|+.+++.|||||||||++++||.
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHhC
Confidence 5788999999999999999999999999993
No 319
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.4e-09 Score=72.81 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++.+|+.++|+|+|||||||+++.+++.+
T Consensus 355 ~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred hccceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 3568899999999999999999999999999643
No 320
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=3.7e-09 Score=72.14 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++|+..
T Consensus 279 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 311 (506)
T PRK13549 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA 311 (506)
T ss_pred cceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.80 E-value=4.5e-09 Score=72.47 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+|+||||||||+++|+...
T Consensus 22 ~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 22 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999999999543
No 322
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.80 E-value=7.3e-09 Score=62.84 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=29.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.+.|.|++||||||+++.||+.+|.++++...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~ 33 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGT 33 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccH
Confidence 68899999999999999999999999997653
No 323
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.80 E-value=5.2e-09 Score=65.70 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=29.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++++++.+|+.++++|||||||||+++.+|..
T Consensus 22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred hccceeecCCCEEEEEcCCCccHHHHHHHHhcC
Confidence 467889999999999999999999999999943
No 324
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.80 E-value=4.4e-09 Score=72.11 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++++..
T Consensus 303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 335 (529)
T PRK15134 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335 (529)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 457899999999999999999999999999954
No 325
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.80 E-value=4e-09 Score=71.77 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.++..
T Consensus 277 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 277 DDVSFSLRRGEILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred ccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 326
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.80 E-value=3.2e-09 Score=73.31 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=29.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...+|.+.+|..++|+||||||||||++.+..
T Consensus 353 ~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 353 KGISFALQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ecceeEecCCceEEEECCCCccHHHHHHHHHc
Confidence 46789999999999999999999999999983
No 327
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.80 E-value=4.4e-09 Score=71.93 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 301 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl 333 (520)
T TIGR03269 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV 333 (520)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.80 E-value=5.9e-09 Score=65.89 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.4
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++.+|++++|+|+||||||||+++|+..
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999999954
No 329
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.79 E-value=3.2e-09 Score=73.67 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|+||||||||++.+++.+
T Consensus 352 ~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 352 FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 4578899999999999999999999999998654
No 330
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.79 E-value=1e-08 Score=62.88 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=30.0
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcC---CeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFN---GEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~---~~~~~~d~~ 47 (68)
.++.+++|.|+||||||||++.|++.++ ..+++.|.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 4567999999999999999999998873 345666654
No 331
>KOG0057|consensus
Probab=98.79 E-value=4.8e-09 Score=72.77 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=32.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+..||++++|+.++|+|+|||||||+++.|.+.+.
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999999999999997764
No 332
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.79 E-value=6e-09 Score=64.64 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=26.4
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
|++.+|++++|+|+||||||||+++++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999999954
No 333
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.79 E-value=4.7e-09 Score=73.41 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||+++|+..+
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4679999999999999999999999999999543
No 334
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.79 E-value=2.7e-09 Score=73.60 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|||||||||+++.+++.+
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 392 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY 392 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999999654
No 335
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.79 E-value=4.3e-09 Score=71.55 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++++..
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 47 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI 47 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 467899999999999999999999999999954
No 336
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.79 E-value=8.2e-09 Score=62.09 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=29.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 16 FVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 16 i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
|+|+|++||||||+++.|++.++..+++.++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHH
Confidence 78999999999999999999999999988764
No 337
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.79 E-value=1.1e-08 Score=57.65 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=29.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhh
Q psy1747 16 FVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGL 50 (68)
Q Consensus 16 i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~ 50 (68)
+.|.||+|+|||++++.+++.++.+++..+...+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 57999999999999999999999888766655443
No 338
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.79 E-value=4.2e-09 Score=71.79 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.++++.+|++++|+||||||||||++.|+..
T Consensus 270 ~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~ 302 (501)
T PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC
Confidence 457899999999999999999999999999854
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=98.78 E-value=3.3e-09 Score=79.84 Aligned_cols=59 Identities=22% Similarity=0.201 Sum_probs=42.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC---CeEEecCc--------hhhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN---GEIISADS--------MQGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~---~~~~~~d~--------~~~~~~~~~~~~~~~~~ 63 (68)
+++++++++|+.++|+|+||||||||++.|.+.+. +. +..|+ ..+.+.+.+.+|++..+
T Consensus 1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~-I~IdG~di~~i~~~~lR~~i~iVpQdp~LF 1322 (1495)
T PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR-IMIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322 (1495)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCce-EEECCEEhhhCCHHHHHhhcEEECCCCeee
Confidence 46789999999999999999999999999997653 22 22222 23445566777776544
No 340
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=5.5e-09 Score=71.65 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+||||||||||+++++..
T Consensus 336 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~ 368 (530)
T PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE 368 (530)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999854
No 341
>PRK13946 shikimate kinase; Provisional
Probab=98.78 E-value=1e-08 Score=62.13 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=31.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.+.|+++|.+||||||+++.|++.+++++++.|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4689999999999999999999999999998885
No 342
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.78 E-value=6.2e-09 Score=66.44 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++++|++++|+|+|||||||+++.+...
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl 57 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGL 57 (263)
T ss_pred cCceeeecCCcEEEEECCCCcCHHHHHHHHhcc
Confidence 467899999999999999999999999999843
No 343
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.77 E-value=5.6e-09 Score=71.18 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++++..
T Consensus 269 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~ 301 (501)
T PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA 301 (501)
T ss_pred ccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999854
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=5.9e-09 Score=73.17 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+||||||||||+++|+..
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 361 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE 361 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999999999954
No 345
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=6.3e-09 Score=68.27 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|+.++|+|+||||||||+++|+...
T Consensus 99 ~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 99 HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4678999999999999999999999999999654
No 346
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.77 E-value=5.5e-09 Score=71.22 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+|+||||||||+++|+..
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 53 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 347
>PLN03130 ABC transporter C family member; Provisional
Probab=98.77 E-value=4.6e-09 Score=79.63 Aligned_cols=60 Identities=27% Similarity=0.150 Sum_probs=43.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCe--EEecCc--------hhhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGE--IISADS--------MQGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~--~~~~d~--------~~~~~~~~~~~~~~~~~ 63 (68)
++++|++++|+.++|+|+||||||||++.|.+.+... -+..|+ ..+.+.+.+.+|++..+
T Consensus 1256 ~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF 1325 (1622)
T PLN03130 1256 HGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLF 1325 (1622)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccc
Confidence 4578999999999999999999999999999765311 122222 23445667777776544
No 348
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.77 E-value=1.1e-08 Score=63.60 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=31.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|.||||||||+++++.++
T Consensus 23 ~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl 56 (258)
T COG4107 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL 56 (258)
T ss_pred cccceeecCCcEEEEEecCCCcHHhHHHHHhccc
Confidence 4689999999999999999999999999999665
No 349
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.77 E-value=5.5e-09 Score=71.45 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl 312 (510)
T PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGL 312 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 457899999999999999999999999999854
No 350
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.77 E-value=1.3e-08 Score=63.82 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=34.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhh
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVEC 56 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~ 56 (68)
.+|+|-||+||||||+++.+|+++++.+++.. .+|+-+.+.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTG--amYRa~a~~ 45 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTG--AMYRAVALA 45 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeeccc--HHHHHHHHH
Confidence 68999999999999999999999999988554 666655443
No 351
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.77 E-value=1.4e-08 Score=60.44 Aligned_cols=34 Identities=21% Similarity=0.530 Sum_probs=31.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.++|+|.+||||||+++.+++.+++++++.|..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~ 36 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQW 36 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 4688999999999999999999999999998854
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.76 E-value=6.4e-09 Score=72.83 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||+++|+..
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 368 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ 368 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 353
>KOG0055|consensus
Probab=98.76 E-value=7.2e-09 Score=76.72 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=42.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCC---e-EEecCc------hhhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNG---E-IISADS------MQGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~---~-~~~~d~------~~~~~~~~~~~~~~~~~ 63 (68)
+++++.++.|+.++|+|+|||||||+.+.|.+.++. . .++..+ ..+...++++.|+|-.+
T Consensus 370 ~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF 439 (1228)
T KOG0055|consen 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF 439 (1228)
T ss_pred CCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhh
Confidence 357899999999999999999999999999987752 2 222221 12334566666666443
No 354
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.76 E-value=5.5e-09 Score=71.02 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++++.+|++++|+|+||||||||+++|+..
T Consensus 265 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 297 (491)
T PRK10982 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI 297 (491)
T ss_pred ceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC
Confidence 457899999999999999999999999999854
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.76 E-value=5.7e-09 Score=78.68 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=43.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCe--EEecCc--------hhhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGE--IISADS--------MQGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~--~~~~d~--------~~~~~~~~~~~~~~~~~ 63 (68)
++++|++++|+.++|+|++|||||||++.|.+.+... -+..|+ ..+.+.+.+.+|++..+
T Consensus 1303 ~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF 1372 (1522)
T TIGR00957 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLF 1372 (1522)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCccc
Confidence 3678999999999999999999999999999765321 122222 23445667777776554
No 356
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.76 E-value=1e-08 Score=62.39 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=26.0
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+.+|++++|+||||||||||++.|++.+.
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46789999999999999999999998764
No 357
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.76 E-value=7.8e-09 Score=65.99 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=28.8
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..+-++++|+.|+|+|+||||||||++.++..
T Consensus 49 ~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 49 DLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred ccceeecCCCcEEEECCCCCCHHHHHHHHhcc
Confidence 45778999999999999999999999999854
No 358
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.76 E-value=1.3e-08 Score=70.30 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=34.3
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchh
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFL 53 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~ 53 (68)
++.+++|.||+||||||+++.|++.++..+++.+ .+|+.+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g--~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTG--AMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCC--ceehHH
Confidence 6789999999999999999999999998888766 445543
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=98.75 E-value=6.8e-09 Score=73.90 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=29.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
++.+|++.+|+.++|+|+||||||||+++|+.
T Consensus 194 ~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 194 VDASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred ECCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 35789999999999999999999999999985
No 360
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.75 E-value=1.7e-08 Score=62.29 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=30.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.|+|.|++||||||+++.|++.++..+++.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCcc
Confidence 589999999999999999999999999988754
No 361
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.75 E-value=7.1e-09 Score=71.49 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|++++|+|+||||||||+++++..
T Consensus 339 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 371 (552)
T TIGR03719 339 DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ 371 (552)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 357899999999999999999999999999854
No 362
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.74 E-value=8.6e-09 Score=71.19 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+|+||||||||++.|+..
T Consensus 341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~ 373 (556)
T PRK11819 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ 373 (556)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999854
No 363
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.74 E-value=8.1e-09 Score=77.77 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=32.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNG 39 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~ 39 (68)
++++|++++|+.++|+|+|||||||+++.|.+.+..
T Consensus 1185 ~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred cCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 357899999999999999999999999999987764
No 364
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.74 E-value=1.7e-08 Score=60.57 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEE--ecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEII--SADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~--~~d~~ 47 (68)
+++++++.|++||||||+++.|++.++.+++ +.|.+
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 4679999999999999999999988765544 44533
No 365
>PRK04182 cytidylate kinase; Provisional
Probab=98.74 E-value=1.2e-08 Score=60.60 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=29.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
+|+|+|++||||||+++.|++.++.++++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~ 33 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGE 33 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHH
Confidence 68999999999999999999999999997653
No 366
>PRK02496 adk adenylate kinase; Provisional
Probab=98.74 E-value=1.2e-08 Score=61.41 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=30.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
..++|+|++||||||+++.|++.++.++++.++.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~ 35 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDI 35 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHH
Confidence 3589999999999999999999999999987654
No 367
>PTZ00243 ABC transporter; Provisional
Probab=98.74 E-value=7.1e-09 Score=78.40 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=42.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC---CeEEecCc--------hhhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN---GEIISADS--------MQGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~---~~~~~~d~--------~~~~~~~~~~~~~~~~~ 63 (68)
++++|++++|+.++|+|+||||||||++.|.+.+. +.+ .+|+ ..+.+.+.+.+|++..+
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I-~IDG~di~~i~l~~LR~~I~iVpQdp~LF 1396 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRRQFSMIPQDPVLF 1396 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccCCHHHHHhcceEECCCCccc
Confidence 46789999999999999999999999999997653 222 2222 23445666777776554
No 368
>PRK14528 adenylate kinase; Provisional
Probab=98.73 E-value=1.7e-08 Score=61.43 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=31.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.++|.|+|||||||+++.+++.++.++++.++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~ 35 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDI 35 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHH
Confidence 4689999999999999999999999999988765
No 369
>KOG3354|consensus
Probab=98.73 E-value=2e-08 Score=60.90 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=35.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhh
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLV 54 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~ 54 (68)
-.+++.|++||||||+++.++.++++++++.|+++-..+.+
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~Nve 53 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVE 53 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHH
Confidence 48999999999999999999999999999999876544433
No 370
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.73 E-value=1.4e-08 Score=62.44 Aligned_cols=32 Identities=34% Similarity=0.566 Sum_probs=29.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 16 FVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 16 i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
|+|+|++||||||+++.|++.++..+++.++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdl 33 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDL 33 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHH
Confidence 78999999999999999999999999988754
No 371
>PRK08233 hypothetical protein; Provisional
Probab=98.73 E-value=2.3e-08 Score=59.54 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=27.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcC-CeEEecCc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFN-GEIISADS 46 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~-~~~~~~d~ 46 (68)
..+++|.|++||||||+++.|+..++ ..++..|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 47899999999999999999998875 34444443
No 372
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=1.1e-08 Score=64.76 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=29.3
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+++++.+|+.++|+|+||||||||++.++..
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCc
Confidence 56899999999999999999999999999843
No 373
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.3e-08 Score=63.08 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=29.4
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..+|.+..|+.+.|.||||+|||||++.++..
T Consensus 20 ~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL 51 (209)
T COG4133 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGL 51 (209)
T ss_pred ceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc
Confidence 56889999999999999999999999999943
No 374
>PRK06762 hypothetical protein; Provisional
Probab=98.72 E-value=2.4e-08 Score=59.15 Aligned_cols=33 Identities=21% Similarity=0.584 Sum_probs=26.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcC--CeEEecC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFN--GEIISAD 45 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~--~~~~~~d 45 (68)
..+++|.|++||||||+++.|++.++ ..+++.|
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D 36 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQD 36 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHH
Confidence 35899999999999999999998884 3344444
No 375
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.71 E-value=9.1e-09 Score=66.18 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=42.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCC--eEEecCc----hhhhchhhhhhccccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNG--EIISADS----MQGLKFLVECRVKLELLR 64 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~--~~~~~d~----~~~~~~~~~~~~~~~~~~ 64 (68)
++.+|++++|++++++|+|||||||.++++...+.. -.+..++ ...+..+++.+.+..+|+
T Consensus 19 ~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~ 85 (300)
T COG4152 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYP 85 (300)
T ss_pred cceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCc
Confidence 678999999999999999999999999999855432 1122222 233445666665555554
No 376
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.71 E-value=1.8e-08 Score=64.10 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=27.3
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++ .+.+|++++|+|+||||||||++.++..+
T Consensus 19 ~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 19 RLP-VPREGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred cCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344 37899999999999999999999999544
No 377
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.70 E-value=8e-09 Score=71.62 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=31.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++||++.+|++++|+|.|||||||++..+...+.
T Consensus 26 ~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~ 60 (539)
T COG1123 26 RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60 (539)
T ss_pred ecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC
Confidence 57899999999999999999999999999985543
No 378
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.70 E-value=1.2e-08 Score=66.44 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
...||++++|.+++++|+|||||||++++|...
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl 73 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL 73 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCc
Confidence 367999999999999999999999999999843
No 379
>KOG1384|consensus
Probab=98.70 E-value=1.7e-08 Score=66.64 Aligned_cols=50 Identities=44% Similarity=0.655 Sum_probs=45.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhcccc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLE 61 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 61 (68)
+.++++|.|++|+|||-|+-.||.+++.++|+.|..++|+++++.+....
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t 55 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKIT 55 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCC
Confidence 55799999999999999999999999999999999999999999876543
No 380
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.69 E-value=1.3e-08 Score=76.68 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=31.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++++|++++|+.++|+|+||||||||++.|++.+.
T Consensus 402 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 436 (1466)
T PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD 436 (1466)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 46789999999999999999999999999997653
No 381
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.69 E-value=3e-08 Score=61.91 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=29.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.+++|.||+||||||+++.|++.++..+++.+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~ 35 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGA 35 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCch
Confidence 479999999999999999999999999887664
No 382
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.69 E-value=2.7e-08 Score=61.13 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=31.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+++|+|++||||||+++.+++.+|.++++.|..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~ 35 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIY 35 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHH
Confidence 4799999999999999999999889999999865
No 383
>PLN03073 ABC transporter F family; Provisional
Probab=98.69 E-value=1.4e-08 Score=72.31 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=30.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|.+++|+|+||||||||+++|+..
T Consensus 526 ~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl 558 (718)
T PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE 558 (718)
T ss_pred eccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 384
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.69 E-value=2.6e-08 Score=64.82 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=34.9
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+.++..|+|+|.+||||||+++.+++.+++++++.|..
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~ 167 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNRE 167 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHH
Confidence 356788999999999999999999999999999988753
No 385
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.68 E-value=2.4e-08 Score=58.91 Aligned_cols=32 Identities=34% Similarity=0.545 Sum_probs=29.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
+|+|.|++||||||+++.+++.++.++++.|.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~ 33 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGD 33 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHH
Confidence 68999999999999999999999999998764
No 386
>PRK01184 hypothetical protein; Provisional
Probab=98.68 E-value=2.8e-08 Score=59.78 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=28.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.+++|+|++||||||+++ +++.++.++++.++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d 33 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGD 33 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhH
Confidence 478999999999999987 67889999998764
No 387
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.68 E-value=2.3e-08 Score=59.81 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++.++|+|+|||||||+++.|+..++
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999987654
No 388
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.68 E-value=2e-08 Score=61.86 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=24.8
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
++++..++.++|+|||||||||+++.++.
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHH
Confidence 34556679999999999999999999983
No 389
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.68 E-value=2e-08 Score=61.65 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=27.5
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++++.+| .++|+||||||||||+++++..+
T Consensus 15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CeeeecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 356778888 99999999999999999998544
No 390
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.67 E-value=2.9e-08 Score=63.49 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=30.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc-CCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF-NGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~-~~~~~~~d~~ 47 (68)
++++++|++||||||+++.|++.+ +..+++.|..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH
Confidence 578999999999999999999998 7888888764
No 391
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.67 E-value=2.9e-08 Score=60.39 Aligned_cols=33 Identities=39% Similarity=0.561 Sum_probs=26.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcC---CeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFN---GEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~---~~~~~~d~~ 47 (68)
+++|+|++||||||+++.|+..+. ..++..|++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 479999999999999999998762 455666643
No 392
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.67 E-value=1.7e-08 Score=70.11 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+|+||||||||+++|+..+
T Consensus 41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999999543
No 393
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.67 E-value=1.7e-08 Score=76.17 Aligned_cols=59 Identities=25% Similarity=0.247 Sum_probs=42.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC--CeEEecCch--------hhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN--GEIISADSM--------QGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~--~~~~~~d~~--------~~~~~~~~~~~~~~~~ 63 (68)
++++|++++|+.++|+|+||||||||++.|.+.+. +.+ ..|+. .+.+.+.+.+|++..+
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I-~IdG~di~~i~~~~lR~~is~IpQdp~LF 1304 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEI-QIDGVSWNSVTLQTWRKAFGVIPQKVFIF 1304 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEE-EECCEEcccCCHHHHHhceEEEeCCCccC
Confidence 45789999999999999999999999999997653 222 22221 2344566666666544
No 394
>PLN02674 adenylate kinase
Probab=98.67 E-value=3.6e-08 Score=62.77 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=32.7
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.....++|+|++||||+|+++.|++.+++.+++.++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~Gdl 65 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDM 65 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHH
Confidence 3346799999999999999999999999999988754
No 395
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.66 E-value=3.3e-08 Score=59.14 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=25.9
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++++..++|.|++||||||+++.+++.+.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999998764
No 396
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.66 E-value=2.1e-08 Score=65.95 Aligned_cols=31 Identities=35% Similarity=0.412 Sum_probs=29.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+++|+++++|++++|+|.||+|||||.+++.
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN 53 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN 53 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Confidence 4689999999999999999999999999997
No 397
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.66 E-value=4.8e-08 Score=54.23 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=24.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCe
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGE 40 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~ 40 (68)
+..+.|.||+|+||||+++.++..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5689999999999999999999877654
No 398
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.66 E-value=3.4e-08 Score=60.65 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=30.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc-CCeEEecCchhh
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF-NGEIISADSMQG 49 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~-~~~~~~~d~~~~ 49 (68)
+++|.|++||||||+++.|++.+ +..+++.|++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 47899999999999999999987 577888887644
No 399
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.66 E-value=2.2e-08 Score=70.54 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+||||||||||++.++..+
T Consensus 469 ~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~ 502 (659)
T TIGR00954 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW 502 (659)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999999999643
No 400
>PRK04040 adenylate kinase; Provisional
Probab=98.65 E-value=5.2e-08 Score=59.63 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=30.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHc--CCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKF--NGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~--~~~~~~~d~~ 47 (68)
.++++|+|.+||||||+++.+++.+ +..+++.++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 3579999999999999999999998 7888888765
No 401
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.65 E-value=2.7e-08 Score=59.46 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
|++++|+||+||||||+++.|++.+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 57899999999999999999997653
No 402
>PRK13409 putative ATPase RIL; Provisional
Probab=98.65 E-value=2.4e-08 Score=69.83 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=28.8
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++++.+|++++|+|+||||||||++.|+..
T Consensus 357 ~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 357 VEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred ecceEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45778899999999999999999999999954
No 403
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.65 E-value=2.6e-08 Score=61.98 Aligned_cols=30 Identities=37% Similarity=0.402 Sum_probs=27.0
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.++.+++++|+||||||||||++.+|..
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhc
Confidence 456789999999999999999999999954
No 404
>PLN03211 ABC transporter G-25; Provisional
Probab=98.64 E-value=1.8e-08 Score=71.11 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++++|+.++|+||||||||||++.|+...
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~ 118 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI 118 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568889999999999999999999999999654
No 405
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.64 E-value=2.6e-08 Score=69.05 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++.+.+|..++|+|+||||||||+++|+...
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4678899999999999999999999999999543
No 406
>PRK06696 uridine kinase; Validated
Probab=98.64 E-value=6.1e-08 Score=60.24 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=29.0
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc---CCeEEe--cCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF---NGEIIS--ADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~--~d~~ 47 (68)
...+|+|.|++||||||+++.|+..+ +.+++. .|++
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 45689999999999999999999877 555543 6654
No 407
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.64 E-value=3e-08 Score=58.14 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=27.5
Q ss_pred EEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 18 ILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 18 i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
|+|||||||||+++.|++.++..+++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~l 30 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDL 30 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHH
Confidence 689999999999999999999999987653
No 408
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.63 E-value=4.8e-08 Score=61.20 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=31.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
..+++|.|++||||||+++.+++.++.++++.+.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~ 37 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGA 37 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCch
Confidence 4689999999999999999999999999887775
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.63 E-value=3e-08 Score=60.71 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=25.3
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
++++..+++++|+||||+||||+++.++
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHH
Confidence 4566788999999999999999999998
No 410
>PRK14526 adenylate kinase; Provisional
Probab=98.63 E-value=5.9e-08 Score=60.42 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=29.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++|+|++||||||+++.|++.++..+++.++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChH
Confidence 478999999999999999999999999887754
No 411
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.63 E-value=3.1e-08 Score=61.95 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.-+||++++++.++|+|.||||||||++.++..
T Consensus 30 ~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred cceEEEecCCcEEEEEccCCCcHhHHHHHHhcc
Confidence 457899999999999999999999999999954
No 412
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.62 E-value=3.5e-08 Score=68.45 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=29.6
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..+|.+.+|..|+|+||||+|||||++.|+...
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 578899999999999999999999999996443
No 413
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.62 E-value=4.3e-08 Score=61.21 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=26.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcC-------CeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFN-------GEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~-------~~~~~~d~~ 47 (68)
+++|.|+|||||||+++.|+..+. ..++..|++
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 479999999999999999997762 234566765
No 414
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.62 E-value=3.9e-08 Score=59.85 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=30.2
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
.+++++.+|+++.|.||||||||||+..++..+.
T Consensus 20 ~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La 53 (213)
T COG4136 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALA 53 (213)
T ss_pred eeeEEecCCcEEEEECCCCccHHHHHHHHHhhcc
Confidence 4688999999999999999999999999886553
No 415
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.62 E-value=6.4e-08 Score=60.81 Aligned_cols=36 Identities=36% Similarity=0.581 Sum_probs=30.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCe---EEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGE---IISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~---~~~~d~~ 47 (68)
+..+|+|.|+|||||||+++.|...++.. ++..|++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y 45 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY 45 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc
Confidence 44689999999999999999999988855 6666754
No 416
>PLN02459 probable adenylate kinase
Probab=98.62 E-value=7.9e-08 Score=61.76 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=32.3
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+...++|+||+||||||+++.|++.+++.+++.++.
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdl 63 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDL 63 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHH
Confidence 3446789999999999999999999999999988754
No 417
>KOG0056|consensus
Probab=98.61 E-value=6e-08 Score=67.62 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=32.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++||++.+|+.++++||||+||||+++.+.+.+.
T Consensus 555 ~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd 589 (790)
T KOG0056|consen 555 SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD 589 (790)
T ss_pred ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh
Confidence 46799999999999999999999999999998775
No 418
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.61 E-value=6e-08 Score=59.67 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=32.0
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHc---CCeEEecCchhhh
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKF---NGEIISADSMQGL 50 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d~~~~~ 50 (68)
..+++.++.++|.|||||||++.++.+++ |...+.+|+..+.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 34567799999999999999999998665 5555555555443
No 419
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.60 E-value=5.5e-08 Score=59.23 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+|+|.|++||||||+++.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998775
No 420
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.60 E-value=4.4e-08 Score=59.98 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.1
Q ss_pred ccccccCCC-CEEEEEecCCCcHHHHHHHHH
Q psy1747 5 FLKVVMSKV-PIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 5 ~~~~~~~~~-~~i~i~G~sGsGKTtl~~~l~ 34 (68)
..++++..+ ++++|+||||+||||+++.++
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 356778887 579999999999999999987
No 421
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.60 E-value=7e-08 Score=57.69 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++|+|++||||||+++.++..+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999766
No 422
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.59 E-value=4.6e-08 Score=60.48 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=28.1
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
.+++.+.+|+.++|+||||||||||+..+|
T Consensus 28 ~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlA 57 (228)
T COG4181 28 GVELVVKRGETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred cceEEecCCceEEEEcCCCCcHHhHHHHHh
Confidence 567889999999999999999999999998
No 423
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.59 E-value=3.7e-08 Score=67.80 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=25.6
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGI 31 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~ 31 (68)
.+++++.+|++++|+||||||||||++
T Consensus 24 ~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 24 KFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CCceeecCCCEEEEECCCCCCHHHHHh
Confidence 568899999999999999999999999
No 424
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.59 E-value=6.2e-08 Score=58.46 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=29.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+++|+|.+||||||+++.+++ ++.++++.|..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence 479999999999999999988 89999999864
No 425
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.59 E-value=3.3e-08 Score=59.97 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=27.6
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..+.+..+..++|+|++||||||+++.++..+
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44567889999999999999999999998654
No 426
>PLN02199 shikimate kinase
Probab=98.58 E-value=8.5e-08 Score=62.70 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=33.5
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++..|+|+|.+||||||+++.+++.+++++++.|..
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~l 136 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTL 136 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHH
Confidence 478999999999999999999999999999999865
No 427
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.58 E-value=8.1e-08 Score=57.66 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=29.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc---CCeEEecCchhhhc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF---NGEIISADSMQGLK 51 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d~~~~~~ 51 (68)
++.+++|+|.+||||||+++.+.+++ +.+++.+|...+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 35689999999999999999999665 56666666555443
No 428
>KOG3347|consensus
Probab=98.57 E-value=9.2e-08 Score=57.64 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=31.8
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
....|.|+|.||+||||+++.+|..++++++...+.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~ 41 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDL 41 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhH
Confidence 456799999999999999999999999999877643
No 429
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.57 E-value=4e-08 Score=65.10 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=31.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+..+++++.|++++|.|-||||||||.+++.+..
T Consensus 45 ~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred ccceeeecCCeEEEEEecCCCCHHHHHHHHhccC
Confidence 5679999999999999999999999999998654
No 430
>PTZ00301 uridine kinase; Provisional
Probab=98.56 E-value=8.2e-08 Score=59.81 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+|+|.|+|||||||+++.|++.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 689999999999999999887654
No 431
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.56 E-value=1e-07 Score=58.29 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=30.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+++|+|++||||||+++.++. ++.++++.|..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~ 35 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAI 35 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence 4799999999999999999987 89999999864
No 432
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.56 E-value=5.4e-08 Score=67.11 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+.++|++.+|++.+++|.||||||||++.|+.
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsG 56 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSG 56 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHhC
Confidence 46789999999999999999999999999994
No 433
>PRK13409 putative ATPase RIL; Provisional
Probab=98.56 E-value=7.3e-08 Score=67.42 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=27.3
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++ .+.+|++++|+|||||||||++++|+..
T Consensus 92 ~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~ 122 (590)
T PRK13409 92 GLP-IPKEGKVTGILGPNGIGKTTAVKILSGE 122 (590)
T ss_pred cCC-cCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344 6789999999999999999999999954
No 434
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.55 E-value=6.3e-08 Score=66.51 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=32.0
Q ss_pred ccccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 3 SSFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 3 ~~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++++++.+|++.+|+|.||+|||||+++|...+
T Consensus 20 nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~ 54 (501)
T COG3845 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY 54 (501)
T ss_pred cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc
Confidence 67899999999999999999999999999998433
No 435
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.54 E-value=6e-08 Score=67.89 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++++|+.++|+||||||||||++.|+...
T Consensus 42 ~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~ 75 (617)
T TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS 75 (617)
T ss_pred cCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999999643
No 436
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.54 E-value=1.1e-07 Score=67.69 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
+++|.||+||||||+++.|++.+++.+++.+.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~ 34 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGA 34 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCc
Confidence 78999999999999999999999999887764
No 437
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.53 E-value=1.4e-07 Score=61.40 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=28.2
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcC-------CeEEecCchh
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFN-------GEIISADSMQ 48 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~-------~~~~~~d~~~ 48 (68)
....+++|.|+|||||||+++.|...+. ..++..|++.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 3457899999999999999998875542 2345667643
No 438
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.53 E-value=1.7e-07 Score=57.30 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.6
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++..++|+|.+||||||+++.|+..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999765
No 439
>PRK14529 adenylate kinase; Provisional
Probab=98.53 E-value=1.1e-07 Score=59.85 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=28.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.++|.|++||||||+++.|++.++.++++..+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gd 33 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGA 33 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccch
Confidence 58899999999999999999999998886653
No 440
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.52 E-value=1.6e-07 Score=48.97 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++|.|++||||||+++.+++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999884
No 441
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.52 E-value=2.5e-07 Score=51.86 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=28.5
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc---CCeEEecCc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF---NGEIISADS 46 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d~ 46 (68)
.+..+.|+|++|+|||++++.++..+ +.+++..+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 46789999999999999999999876 556555543
No 442
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.52 E-value=8.7e-08 Score=67.43 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+++|++.+|+.++|+|+||||||||+++++..+
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 58 (648)
T PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD 58 (648)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678899999999999999999999999999554
No 443
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.51 E-value=1.9e-07 Score=54.81 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=27.0
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCC
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNG 39 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~ 39 (68)
++++.+++|.|+.||||||+++.+++.++.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 467889999999999999999999988764
No 444
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.51 E-value=6.4e-08 Score=73.11 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=30.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++++|+.++|+||+|||||||++.|+..+
T Consensus 443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~ 476 (1490)
T TIGR01271 443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL 476 (1490)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577889999999999999999999999999544
No 445
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.51 E-value=2.4e-07 Score=53.33 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=25.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEE
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEII 42 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~ 42 (68)
.++|+|++|+|||++++.+++.++.+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 3789999999999999999999887765
No 446
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.51 E-value=1.9e-07 Score=57.72 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=29.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+++|+|++||||||+++.+.. +|.++++.|..
T Consensus 6 ~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i 38 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRV 38 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHH
Confidence 4789999999999999999985 79999988843
No 447
>PRK08356 hypothetical protein; Provisional
Probab=98.51 E-value=2.1e-07 Score=56.81 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=27.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
++++|+||+||||||+++.|. .++..+++..+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCC
Confidence 579999999999999999996 57888887765
No 448
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.51 E-value=6.6e-08 Score=65.82 Aligned_cols=31 Identities=19% Similarity=0.513 Sum_probs=28.2
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++.+|+++.|+|.|||||||+++.+...
T Consensus 342 iNl~ikrGelvFliG~NGsGKST~~~LLtGL 372 (546)
T COG4615 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGL 372 (546)
T ss_pred eeeEEecCcEEEEECCCCCcHHHHHHHHhcc
Confidence 5778899999999999999999999999843
No 449
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.50 E-value=6.4e-08 Score=65.96 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=31.6
Q ss_pred ccccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 3 SSFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 3 ~~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+.+++++.+|+.++|+|.|||||||+.++|.+.+
T Consensus 303 Vd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~ 337 (534)
T COG4172 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI 337 (534)
T ss_pred eccceeEecCCCeEEEEecCCCCcchHHHHHHhhc
Confidence 35789999999999999999999999999998654
No 450
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.50 E-value=2.2e-07 Score=57.76 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=31.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
..++|+|..||||||+++.++..++.++++.|..
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i 40 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTI 40 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence 5799999999999999999998889999988854
No 451
>PLN03130 ABC transporter C family member; Provisional
Probab=98.50 E-value=6.5e-08 Score=73.55 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=31.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++.++++++|+.++|+|++|||||||++.|.+.+.
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~ 668 (1622)
T PLN03130 634 SNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP 668 (1622)
T ss_pred eceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc
Confidence 35788999999999999999999999999997653
No 452
>PRK12338 hypothetical protein; Provisional
Probab=98.50 E-value=2.2e-07 Score=61.20 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
+..+++|.|+|||||||+++.+|..++..++..+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~t 36 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIET 36 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccC
Confidence 4568999999999999999999999998877333
No 453
>PLN03140 ABC transporter G family member; Provisional
Probab=98.49 E-value=7.9e-08 Score=72.66 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++.+++|+.++|+||||||||||+++|+..+
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l 215 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL 215 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3578889999999999999999999999999654
No 454
>PRK13808 adenylate kinase; Provisional
Probab=98.49 E-value=1.9e-07 Score=61.77 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=30.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.|+|+||+||||||+++.|++.+++.+++.++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdl 34 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDM 34 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHH
Confidence 588999999999999999999999999988754
No 455
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.49 E-value=8.4e-08 Score=72.56 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|++|||||||++.++..+
T Consensus 655 ~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~ 688 (1522)
T TIGR00957 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 688 (1522)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999999999654
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.49 E-value=1.6e-07 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHc
Q psy1747 16 FVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 16 i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
|+|.|++||||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999886
No 457
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.48 E-value=1.7e-07 Score=65.00 Aligned_cols=36 Identities=33% Similarity=0.532 Sum_probs=33.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+...++|+|.+||||||+++.+|+.+++++++.|..
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ 40 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE 40 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH
Confidence 456799999999999999999999999999999975
No 458
>PRK15453 phosphoribulokinase; Provisional
Probab=98.48 E-value=2.6e-07 Score=60.17 Aligned_cols=39 Identities=28% Similarity=0.568 Sum_probs=30.9
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcC-----CeEEecCchhh
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFN-----GEIISADSMQG 49 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~-----~~~~~~d~~~~ 49 (68)
.+..+|+|+|.|||||||+++.++..++ ..++..|++.-
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 3567999999999999999999987653 34577777654
No 459
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.47 E-value=1.5e-07 Score=56.27 Aligned_cols=29 Identities=28% Similarity=0.627 Sum_probs=25.6
Q ss_pred EecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 19 LGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 19 ~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+|+|||||||+++.++..++..+++.|..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence 59999999999999999999888877753
No 460
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.47 E-value=1.7e-07 Score=56.77 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=27.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc-----CCeEEecCchhh
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF-----NGEIISADSMQG 49 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~-----~~~~~~~d~~~~ 49 (68)
+++|.|++||||||+++.|+..+ ...+++.|++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 47999999999999999999775 345667776543
No 461
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.47 E-value=2.3e-07 Score=65.53 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=34.4
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhh
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLV 54 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~ 54 (68)
+..++.|.||+||||||+++.+++.+++++++.+ .+|+.+.
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~--~~~~~~~ 481 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSG--ALYRLTA 481 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHH--HhhhHHH
Confidence 3568999999999999999999999999998666 5555543
No 462
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.47 E-value=2.2e-07 Score=56.30 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=29.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+|+|+|..||||||+++.++...+.++++.|..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~ 33 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKI 33 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHH
Confidence 479999999999999999998877999999865
No 463
>PLN03232 ABC transporter C family member; Provisional
Probab=98.46 E-value=1.2e-07 Score=71.67 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.++++++|+.++|+|++|||||||++.|.+.+
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~ 667 (1495)
T PLN03232 634 SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1495)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999999999999999654
No 464
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.46 E-value=2.8e-07 Score=58.36 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=24.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEec
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISA 44 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~ 44 (68)
..+.++||+|+|||||++.+|..++.++...
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 4689999999999999999999888766433
No 465
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.46 E-value=1.1e-07 Score=71.47 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++.+++|+.++|+||||||||||++.|+...
T Consensus 78 ~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~ 111 (1394)
T TIGR00956 78 KPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNT 111 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578889999999999999999999999999653
No 466
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.46 E-value=2e-07 Score=58.19 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+..+++|.|+||||||||++.|+..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999665
No 467
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.46 E-value=2.2e-07 Score=56.76 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=28.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
+.++|+|.||+||||+++.|+ .++.++++..+
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~e 32 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNE 32 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHH
Confidence 468999999999999999999 88988887653
No 468
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.46 E-value=1.2e-07 Score=71.31 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+|+.++|+||||||||||++.|+...
T Consensus 780 ~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~ 813 (1394)
T TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV 813 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999999999664
No 469
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.45 E-value=2.5e-07 Score=59.54 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=26.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc---CCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF---NGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d~~ 47 (68)
+++|+|+|||||||+++.|+..+ +..++..|++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 47999999999999999999765 3456777754
No 470
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.45 E-value=3.4e-07 Score=56.55 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
++.+++|.|++|+||||+++.++..++..++...
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~ 35 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSG 35 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehh
Confidence 3568999999999999999999999888765443
No 471
>PTZ00243 ABC transporter; Provisional
Probab=98.44 E-value=1.1e-07 Score=72.07 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=30.0
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++++++|+.++|+|+||||||||++.++..+
T Consensus 678 ~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~ 710 (1560)
T PTZ00243 678 DVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF 710 (1560)
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 568899999999999999999999999999554
No 472
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.44 E-value=3.9e-07 Score=56.60 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+|+|+|..||||||+++.++. +|.++++.|..
T Consensus 3 ~iIglTG~igsGKStva~~~~~-~G~~vidaD~v 35 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDV 35 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHH
Confidence 5799999999999999999988 89999999965
No 473
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.44 E-value=3.4e-07 Score=56.42 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=29.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+++|+|.+||||||+++.++. +|.++++.|..
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHH
Confidence 3699999999999999999987 69999999853
No 474
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.44 E-value=2.2e-07 Score=59.59 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=26.4
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEI 33 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l 33 (68)
+++++++.|..++|+|+||||||||++.+
T Consensus 13 ~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 13 NIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred CceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 56788899999999999999999999866
No 475
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=2.3e-07 Score=57.46 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++..|+.+++-||||+||||++++|-..+
T Consensus 28 ~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 28 RNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred eceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence 4678999999999999999999999999997655
No 476
>PLN03140 ABC transporter G family member; Provisional
Probab=98.43 E-value=1.4e-07 Score=71.36 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++.+++|++++|+||||||||||++.|+...
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~ 930 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 930 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCC
Confidence 3578899999999999999999999999999653
No 477
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.43 E-value=7.1e-08 Score=60.63 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=28.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+.+|+++.+|+++++.||||+||||.+.++.
T Consensus 21 ~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~ 51 (243)
T COG1137 21 NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIV 51 (243)
T ss_pred eeeeEEEcCCcEEEEECCCCCCceeEEEEEE
Confidence 5789999999999999999999999888775
No 478
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.43 E-value=3.4e-07 Score=61.72 Aligned_cols=43 Identities=26% Similarity=0.101 Sum_probs=36.0
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhh
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGL 50 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~ 50 (68)
+.+.....++|.||+|||||.+++++++.++.+++.++...+.
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~ 185 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE 185 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence 3456677899999999999999999999999998877765444
No 479
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.43 E-value=3.9e-07 Score=53.71 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=24.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc---CCeEEecC
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF---NGEIISAD 45 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d 45 (68)
+++|.|.+||||||+++.+++.+ +..++..+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 37899999999999999999877 54444333
No 480
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.43 E-value=3.7e-07 Score=47.26 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=23.8
Q ss_pred cccccCC-CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 6 LKVVMSK-VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 6 ~~~~~~~-~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..+++.+ +...+|.|+|||||||++-++.-
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455554 46899999999999999988863
No 481
>PLN02348 phosphoribulokinase
Probab=98.42 E-value=3.9e-07 Score=61.45 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+..+|+|.|+|||||||+++.|+..++
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999998775
No 482
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.42 E-value=1.9e-07 Score=72.60 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|.+.+|++++|+|+|||||||++++|+..
T Consensus 1956 ~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl 1988 (2272)
T TIGR01257 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD 1988 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 483
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.42 E-value=2.4e-07 Score=60.81 Aligned_cols=36 Identities=33% Similarity=0.351 Sum_probs=30.7
Q ss_pred ccccCC--CCEEEEEecCCCcHHHHHHHHHHHcCCeEE
Q psy1747 7 KVVMSK--VPIFVILGSTGTGKSKLGIEIAKKFNGEII 42 (68)
Q Consensus 7 ~~~~~~--~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~ 42 (68)
+..+.+ ++.++|+|++|+|||||++.|++.++.+++
T Consensus 154 ~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 154 PREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 445555 779999999999999999999998887765
No 484
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.42 E-value=4.4e-07 Score=59.39 Aligned_cols=36 Identities=31% Similarity=0.556 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCe-EEecCchh
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGE-IISADSMQ 48 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~-~~~~d~~~ 48 (68)
..+++|.|++||||||++..|+..++.+ ++..|...
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~r 128 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIR 128 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 4589999999999999999999999987 56766553
No 485
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.41 E-value=4.4e-07 Score=62.95 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=28.3
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEe
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIIS 43 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~ 43 (68)
+.++++|.||+||||||++++||+.++..+..
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 35689999999999999999999999877664
No 486
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.41 E-value=2.4e-07 Score=57.78 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+.+++|+||||||||||+++|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 6799999999999999999997
No 487
>PRK07429 phosphoribulokinase; Provisional
Probab=98.41 E-value=4.2e-07 Score=59.93 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=29.8
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcC---CeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFN---GEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~---~~~~~~d~~ 47 (68)
+..+++|.|++||||||+++.++..++ ..++..|++
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 446899999999999999999998876 456677765
No 488
>PRK07667 uridine kinase; Provisional
Probab=98.41 E-value=5.2e-07 Score=55.13 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=28.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcC-----CeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFN-----GEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~-----~~~~~~d~~ 47 (68)
..+|+|.|++||||||+++.|+..++ ..+++.|++
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 35899999999999999999987652 346777764
No 489
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.40 E-value=2.3e-07 Score=57.23 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
++..++|+|+|||||||+++.|+
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHhe
Confidence 36799999999999999999997
No 490
>KOG0060|consensus
Probab=98.40 E-value=2.6e-07 Score=64.81 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=29.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+..+++++.|+.+.|+||||||||+|++.++.
T Consensus 452 e~Ls~~V~~g~~LLItG~sG~GKtSLlRvlgg 483 (659)
T KOG0060|consen 452 ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGG 483 (659)
T ss_pred eeeeeEecCCCeEEEECCCCCchhHHHHHHhc
Confidence 35789999999999999999999999999984
No 491
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.39 E-value=3.6e-07 Score=56.37 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+++.++|+||+|||||||++.|.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45788999999999999999999753
No 492
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.39 E-value=3.4e-07 Score=56.71 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=27.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
++.+++...+++++|+||||+||||+++.++
T Consensus 20 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 20 NDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred eeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4567777888999999999999999999886
No 493
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.39 E-value=2.9e-07 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++|+||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999997653
No 494
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.38 E-value=3.8e-07 Score=56.25 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=23.0
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
.+++.++ +++|+|+||+|||||++++.
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4555665 99999999999999999985
No 495
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.38 E-value=3.4e-07 Score=58.17 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+++++.++..+.|+|.|||||||+++.++..+
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHhhCcc
Confidence 4578999999999999999999999999999543
No 496
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.38 E-value=5.8e-07 Score=61.26 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=31.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
..+.++||+|+|||++++.+++.++.+++.+|..
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 6799999999999999999999999999888854
No 497
>KOG0061|consensus
Probab=98.38 E-value=2.6e-07 Score=64.98 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++..+.+|++.+|.||+|||||||+.+++.+.
T Consensus 47 ~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~ 80 (613)
T KOG0061|consen 47 KGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRL 80 (613)
T ss_pred eCcEEEEecCeEEEEECCCCCCHHHHHHHHhccc
Confidence 3567788999999999999999999999999654
No 498
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.37 E-value=7e-07 Score=53.38 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=24.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc---CCeEE
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF---NGEII 42 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~ 42 (68)
++|+|.|+.||||||+++.|++.+ |..++
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~ 32 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVV 32 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 368999999999999999999776 44444
No 499
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.37 E-value=4.2e-07 Score=60.72 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.5
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNG 39 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~ 39 (68)
+.++++|+||+|+||||++++|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999977653
No 500
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.37 E-value=6.2e-07 Score=57.10 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=30.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+++|+|..||||||+++.+...+|.++++.|..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~i 35 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLV 35 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHH
Confidence 3799999999999999999998889999999864
Done!