Query psy1747
Match_columns 68
No_of_seqs 177 out of 1379
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 23:21:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vaa_A Shikimate kinase, SK; s 99.3 1.6E-12 5.3E-17 77.9 4.1 44 4-47 16-59 (199)
2 3a8t_A Adenylate isopentenyltr 99.3 2.4E-12 8.3E-17 83.9 4.5 50 12-61 39-88 (339)
3 3exa_A TRNA delta(2)-isopenten 99.2 1E-11 3.5E-16 80.5 4.7 49 13-61 3-51 (322)
4 3foz_A TRNA delta(2)-isopenten 99.2 2.1E-11 7.2E-16 78.9 4.8 49 13-61 10-58 (316)
5 2ze6_A Isopentenyl transferase 99.2 3.3E-11 1.1E-15 75.0 5.4 43 14-56 2-44 (253)
6 3d3q_A TRNA delta(2)-isopenten 99.1 4.4E-11 1.5E-15 78.0 5.1 46 14-59 8-53 (340)
7 1kag_A SKI, shikimate kinase I 99.1 4.2E-11 1.4E-15 69.6 4.1 37 11-47 2-38 (173)
8 1z6g_A Guanylate kinase; struc 99.1 3.1E-11 1.1E-15 73.6 3.6 34 4-37 14-47 (218)
9 3eph_A TRNA isopentenyltransfe 99.1 5.8E-11 2E-15 79.0 5.1 49 14-62 3-51 (409)
10 3tif_A Uncharacterized ABC tra 99.1 2.8E-11 9.5E-16 74.9 3.0 34 4-37 22-55 (235)
11 1y63_A LMAJ004144AAA protein; 99.1 5.7E-11 1.9E-15 70.4 4.1 42 6-47 3-45 (184)
12 3tr0_A Guanylate kinase, GMP k 99.1 5.6E-11 1.9E-15 70.6 4.1 32 7-38 1-32 (205)
13 3crm_A TRNA delta(2)-isopenten 99.1 6.5E-11 2.2E-15 76.7 4.7 46 14-59 6-51 (323)
14 2cbz_A Multidrug resistance-as 99.1 2.5E-11 8.5E-16 75.2 2.5 33 4-36 22-54 (237)
15 2jeo_A Uridine-cytidine kinase 99.1 6.9E-11 2.4E-15 72.8 4.3 37 4-40 16-52 (245)
16 2pcj_A ABC transporter, lipopr 99.1 3.4E-11 1.2E-15 74.0 2.7 34 4-37 21-54 (224)
17 4eun_A Thermoresistant glucoki 99.1 1.6E-10 5.6E-15 69.1 5.3 37 11-47 27-63 (200)
18 1b0u_A Histidine permease; ABC 99.1 5.1E-11 1.7E-15 74.8 3.0 34 4-37 23-56 (262)
19 1cke_A CK, MSSA, protein (cyti 99.1 1.2E-10 4.1E-15 70.2 4.4 37 12-48 4-40 (227)
20 1g6h_A High-affinity branched- 99.1 5E-11 1.7E-15 74.5 2.8 34 4-37 24-57 (257)
21 3gfo_A Cobalt import ATP-bindi 99.1 4.7E-11 1.6E-15 75.6 2.6 34 4-37 25-58 (275)
22 2bbs_A Cystic fibrosis transme 99.1 4.3E-11 1.5E-15 76.3 2.3 34 4-37 55-88 (290)
23 3nwj_A ATSK2; P loop, shikimat 99.1 3.7E-11 1.2E-15 75.3 2.0 43 5-47 37-82 (250)
24 1zp6_A Hypothetical protein AT 99.1 1.3E-10 4.4E-15 68.5 4.2 32 9-40 5-36 (191)
25 4g1u_C Hemin import ATP-bindin 99.1 5.3E-11 1.8E-15 74.9 2.6 34 4-37 28-61 (266)
26 2zu0_C Probable ATP-dependent 99.1 8.5E-11 2.9E-15 73.9 3.5 33 4-36 37-69 (267)
27 2olj_A Amino acid ABC transpor 99.1 6.6E-11 2.3E-15 74.5 3.0 34 4-37 41-74 (263)
28 3cm0_A Adenylate kinase; ATP-b 99.1 8.2E-11 2.8E-15 69.1 3.2 37 11-47 2-38 (186)
29 1ji0_A ABC transporter; ATP bi 99.1 5.9E-11 2E-15 73.6 2.6 34 4-37 23-56 (240)
30 1htw_A HI0065; nucleotide-bind 99.1 7.5E-11 2.6E-15 69.4 2.9 33 5-37 25-57 (158)
31 2d2e_A SUFC protein; ABC-ATPas 99.1 7.7E-11 2.6E-15 73.4 3.1 33 4-36 20-52 (250)
32 1knq_A Gluconate kinase; ALFA/ 99.1 2.5E-10 8.6E-15 66.6 5.1 37 11-47 6-42 (175)
33 4gp7_A Metallophosphoesterase; 99.1 7.2E-11 2.5E-15 69.5 2.7 30 5-34 1-30 (171)
34 1vpl_A ABC transporter, ATP-bi 99.0 8.1E-11 2.8E-15 73.8 3.0 34 4-37 32-65 (256)
35 2pze_A Cystic fibrosis transme 99.0 6.9E-11 2.4E-15 72.8 2.6 34 4-37 25-58 (229)
36 2ff7_A Alpha-hemolysin translo 99.0 7.1E-11 2.4E-15 73.6 2.6 34 4-37 26-59 (247)
37 3nh6_A ATP-binding cassette SU 99.0 1.8E-11 6.2E-16 78.6 -0.1 35 4-38 71-105 (306)
38 2ihy_A ABC transporter, ATP-bi 99.0 8.1E-11 2.8E-15 74.6 2.6 34 4-37 38-71 (279)
39 2ixe_A Antigen peptide transpo 99.0 9.8E-11 3.4E-15 73.8 3.0 34 4-37 36-69 (271)
40 2yz2_A Putative ABC transporte 99.0 9.9E-11 3.4E-15 73.5 3.0 34 4-37 24-57 (266)
41 1mv5_A LMRA, multidrug resista 99.0 7.8E-11 2.7E-15 73.0 2.5 34 4-37 19-52 (243)
42 1sgw_A Putative ABC transporte 99.0 6.9E-11 2.4E-15 72.5 2.2 34 4-37 26-59 (214)
43 3fvq_A Fe(3+) IONS import ATP- 99.0 1.4E-10 4.9E-15 76.0 3.6 34 4-37 21-54 (359)
44 2ghi_A Transport protein; mult 99.0 1.1E-10 3.8E-15 73.1 3.0 33 5-37 38-70 (260)
45 3trf_A Shikimate kinase, SK; a 99.0 2.3E-10 7.8E-15 67.2 4.0 35 13-47 5-39 (185)
46 2qi9_C Vitamin B12 import ATP- 99.0 1E-10 3.5E-15 73.1 2.6 34 4-37 17-50 (249)
47 2qt1_A Nicotinamide riboside k 99.0 2.7E-10 9.1E-15 68.2 4.3 45 4-48 12-57 (207)
48 2c95_A Adenylate kinase 1; tra 99.0 2.7E-10 9.2E-15 67.1 4.3 38 10-47 6-43 (196)
49 2rhm_A Putative kinase; P-loop 99.0 2.3E-10 7.9E-15 67.3 3.9 38 10-47 2-39 (193)
50 3kb2_A SPBC2 prophage-derived 99.0 4.5E-10 1.5E-14 64.8 5.0 35 14-48 2-36 (173)
51 2nq2_C Hypothetical ABC transp 99.0 1.1E-10 3.9E-15 72.9 2.6 34 4-37 22-55 (253)
52 3tui_C Methionine import ATP-b 99.0 1.9E-10 6.4E-15 75.6 3.5 34 4-37 45-78 (366)
53 4e22_A Cytidylate kinase; P-lo 99.0 3.5E-10 1.2E-14 70.2 4.5 37 11-47 25-61 (252)
54 3t61_A Gluconokinase; PSI-biol 99.0 4.4E-10 1.5E-14 67.0 4.8 35 13-47 18-52 (202)
55 3iij_A Coilin-interacting nucl 99.0 3.3E-10 1.1E-14 66.4 4.1 40 8-47 6-45 (180)
56 3rlf_A Maltose/maltodextrin im 99.0 2.1E-10 7E-15 75.7 3.5 34 4-37 20-53 (381)
57 2v9p_A Replication protein E1; 99.0 2.9E-10 9.9E-15 73.1 4.1 38 5-42 118-155 (305)
58 1znw_A Guanylate kinase, GMP k 99.0 3.4E-10 1.2E-14 68.1 4.0 30 8-37 15-44 (207)
59 2yyz_A Sugar ABC transporter, 99.0 2.4E-10 8.1E-15 74.9 3.5 34 4-37 20-53 (359)
60 3asz_A Uridine kinase; cytidin 99.0 3.2E-10 1.1E-14 67.8 3.8 38 10-47 3-42 (211)
61 3lnc_A Guanylate kinase, GMP k 99.0 1.4E-10 4.9E-15 70.6 2.3 34 4-37 18-52 (231)
62 3umf_A Adenylate kinase; rossm 99.0 3.3E-10 1.1E-14 69.8 3.8 41 6-46 22-62 (217)
63 2onk_A Molybdate/tungstate ABC 99.0 2.6E-10 9E-15 70.9 3.4 33 4-37 16-48 (240)
64 1z47_A CYSA, putative ABC-tran 99.0 2.2E-10 7.6E-15 74.9 3.1 34 4-37 32-65 (355)
65 2it1_A 362AA long hypothetical 99.0 2.7E-10 9.2E-15 74.6 3.5 34 4-37 20-53 (362)
66 1via_A Shikimate kinase; struc 99.0 3.5E-10 1.2E-14 66.2 3.5 34 14-47 5-38 (175)
67 1v43_A Sugar-binding transport 99.0 2.9E-10 1E-14 74.7 3.5 34 4-37 28-61 (372)
68 3d31_A Sulfate/molybdate ABC t 99.0 2.3E-10 7.8E-15 74.6 2.7 34 4-37 17-50 (348)
69 1g29_1 MALK, maltose transport 99.0 2.9E-10 9.8E-15 74.7 3.1 34 4-37 20-53 (372)
70 3gd7_A Fusion complex of cysti 99.0 3.7E-10 1.3E-14 74.6 3.6 33 4-36 38-70 (390)
71 2bwj_A Adenylate kinase 5; pho 99.0 3.3E-10 1.1E-14 66.9 2.9 38 10-47 9-46 (199)
72 1zuh_A Shikimate kinase; alpha 99.0 5.5E-10 1.9E-14 64.8 3.8 35 13-47 7-41 (168)
73 1oxx_K GLCV, glucose, ABC tran 99.0 1.9E-10 6.6E-15 75.0 2.0 34 4-37 22-55 (353)
74 2iyv_A Shikimate kinase, SK; t 98.9 4.8E-10 1.6E-14 65.8 3.4 34 14-47 3-36 (184)
75 3c8u_A Fructokinase; YP_612366 98.9 4.3E-10 1.5E-14 67.7 3.1 39 10-48 19-62 (208)
76 1tev_A UMP-CMP kinase; ploop, 98.9 6.1E-10 2.1E-14 65.3 3.6 35 13-47 3-37 (196)
77 3b5x_A Lipid A export ATP-bind 98.9 3.3E-10 1.1E-14 77.3 2.6 34 4-37 360-393 (582)
78 2pjz_A Hypothetical protein ST 98.9 4.3E-10 1.5E-14 70.8 2.9 33 4-37 22-54 (263)
79 1qhx_A CPT, protein (chloramph 98.9 1.3E-09 4.3E-14 63.6 4.6 31 13-43 3-33 (178)
80 3uie_A Adenylyl-sulfate kinase 98.9 4.9E-10 1.7E-14 67.0 2.7 30 8-37 20-49 (200)
81 1zd8_A GTP:AMP phosphotransfer 98.9 1.1E-09 3.8E-14 66.4 4.2 37 11-47 5-41 (227)
82 2if2_A Dephospho-COA kinase; a 98.9 1.1E-09 3.7E-14 65.2 4.0 33 14-47 2-34 (204)
83 2bbw_A Adenylate kinase 4, AK4 98.9 8.6E-10 2.9E-14 67.7 3.6 36 12-47 26-61 (246)
84 3lw7_A Adenylate kinase relate 98.9 1.1E-09 3.8E-14 62.8 3.9 33 14-47 2-34 (179)
85 1aky_A Adenylate kinase; ATP:A 98.9 1.2E-09 4.3E-14 65.9 4.2 36 12-47 3-38 (220)
86 2cdn_A Adenylate kinase; phosp 98.9 1.3E-09 4.4E-14 64.9 4.2 37 11-47 18-54 (201)
87 1lvg_A Guanylate kinase, GMP k 98.9 8.1E-10 2.8E-14 66.3 3.3 28 10-37 1-28 (198)
88 2pez_A Bifunctional 3'-phospho 98.9 1.4E-09 5E-14 63.7 4.2 38 11-48 3-43 (179)
89 1e6c_A Shikimate kinase; phosp 98.9 1.2E-09 4E-14 63.4 3.6 34 14-47 3-36 (173)
90 1kht_A Adenylate kinase; phosp 98.9 1E-09 3.5E-14 64.2 3.4 34 13-46 3-41 (192)
91 2j41_A Guanylate kinase; GMP, 98.9 1.3E-09 4.4E-14 64.6 3.7 29 9-37 2-30 (207)
92 3b60_A Lipid A export ATP-bind 98.9 2.8E-10 9.7E-15 77.6 0.9 35 4-38 360-394 (582)
93 1vht_A Dephospho-COA kinase; s 98.9 1.4E-09 4.7E-14 65.5 3.8 35 12-47 3-37 (218)
94 1s96_A Guanylate kinase, GMP k 98.9 1.6E-09 5.3E-14 66.5 4.0 30 9-38 12-41 (219)
95 1ukz_A Uridylate kinase; trans 98.9 1.9E-09 6.5E-14 64.1 4.2 36 12-47 14-49 (203)
96 1jjv_A Dephospho-COA kinase; P 98.9 1.2E-09 4E-14 65.2 3.3 33 14-47 3-35 (206)
97 3fb4_A Adenylate kinase; psych 98.9 1.6E-09 5.5E-14 65.0 3.9 33 15-47 2-34 (216)
98 2pt5_A Shikimate kinase, SK; a 98.9 1.7E-09 5.8E-14 62.5 3.8 34 14-47 1-34 (168)
99 3dl0_A Adenylate kinase; phosp 98.9 1.7E-09 5.8E-14 65.0 3.9 33 15-47 2-34 (216)
100 3sr0_A Adenylate kinase; phosp 98.9 1.8E-09 6E-14 65.9 4.0 34 14-47 1-34 (206)
101 1qf9_A UMP/CMP kinase, protein 98.9 2E-09 6.9E-14 62.9 4.1 35 13-47 6-40 (194)
102 3be4_A Adenylate kinase; malar 98.9 2E-09 6.8E-14 65.1 4.1 36 12-47 4-39 (217)
103 3r20_A Cytidylate kinase; stru 98.9 2.6E-09 8.8E-14 66.5 4.6 37 11-47 7-43 (233)
104 3tlx_A Adenylate kinase 2; str 98.9 1.9E-09 6.6E-14 66.5 3.9 37 11-47 27-63 (243)
105 2v54_A DTMP kinase, thymidylat 98.9 2.2E-09 7.6E-14 63.6 4.0 35 11-45 2-37 (204)
106 2bdt_A BH3686; alpha-beta prot 98.9 1.9E-09 6.5E-14 63.6 3.7 33 13-45 2-35 (189)
107 3qf4_B Uncharacterized ABC tra 98.9 3E-10 1E-14 77.8 0.2 35 4-38 372-406 (598)
108 2x8a_A Nuclear valosin-contain 98.9 2.7E-09 9.3E-14 67.1 4.5 39 6-46 39-77 (274)
109 1sq5_A Pantothenate kinase; P- 98.8 1.4E-09 4.6E-14 69.3 3.1 37 11-47 78-121 (308)
110 1uf9_A TT1252 protein; P-loop, 98.8 2E-09 6.8E-14 63.6 3.6 34 13-47 8-41 (203)
111 4a82_A Cystic fibrosis transme 98.8 2.3E-10 7.9E-15 78.0 -0.7 35 4-38 358-392 (578)
112 3qf4_A ABC transporter, ATP-bi 98.8 3.5E-10 1.2E-14 77.4 0.1 35 4-38 360-394 (587)
113 1zak_A Adenylate kinase; ATP:A 98.8 1.8E-09 6.2E-14 65.2 3.3 36 12-47 4-39 (222)
114 1kgd_A CASK, peripheral plasma 98.8 2.9E-09 9.9E-14 62.9 4.0 27 12-38 4-30 (180)
115 3ec2_A DNA replication protein 98.8 2.3E-09 7.7E-14 62.9 3.5 31 7-37 32-62 (180)
116 2grj_A Dephospho-COA kinase; T 98.8 2.7E-09 9.4E-14 64.4 3.9 35 13-47 12-46 (192)
117 1q3t_A Cytidylate kinase; nucl 98.8 3.5E-09 1.2E-13 64.7 4.4 38 10-47 13-50 (236)
118 1lw7_A Transcriptional regulat 98.8 2.9E-09 1E-13 68.9 4.0 37 4-40 159-197 (365)
119 2wwf_A Thymidilate kinase, put 98.8 1.1E-09 3.8E-14 65.2 1.9 31 9-39 6-36 (212)
120 2ehv_A Hypothetical protein PH 98.8 2.6E-09 8.8E-14 64.7 3.4 26 9-34 26-51 (251)
121 1uj2_A Uridine-cytidine kinase 98.8 4.1E-09 1.4E-13 65.0 4.3 36 12-47 21-66 (252)
122 3ake_A Cytidylate kinase; CMP 98.8 3.9E-09 1.3E-13 62.6 4.0 33 15-47 4-36 (208)
123 3tau_A Guanylate kinase, GMP k 98.8 4.5E-09 1.5E-13 63.3 4.0 28 11-38 6-33 (208)
124 1ak2_A Adenylate kinase isoenz 98.8 5.3E-09 1.8E-13 63.8 4.3 36 12-47 15-50 (233)
125 3b9q_A Chloroplast SRP recepto 98.8 4.4E-09 1.5E-13 67.2 4.1 33 5-37 92-124 (302)
126 3a00_A Guanylate kinase, GMP k 98.8 3.5E-09 1.2E-13 62.7 3.4 25 13-37 1-25 (186)
127 1e4v_A Adenylate kinase; trans 98.8 5.1E-09 1.8E-13 63.0 4.0 33 15-47 2-34 (214)
128 4f4c_A Multidrug resistance pr 98.8 4.6E-10 1.6E-14 82.4 -1.0 59 4-63 1096-1165(1321)
129 1ly1_A Polynucleotide kinase; 98.8 3.3E-09 1.1E-13 61.5 2.8 33 14-46 3-36 (181)
130 1ixz_A ATP-dependent metallopr 98.8 6E-09 2.1E-13 63.9 4.1 39 6-46 44-82 (254)
131 4a74_A DNA repair and recombin 98.8 4E-09 1.4E-13 63.2 3.0 28 9-36 21-48 (231)
132 2pbr_A DTMP kinase, thymidylat 98.8 8.6E-09 2.9E-13 60.4 4.4 33 14-46 1-36 (195)
133 2qor_A Guanylate kinase; phosp 98.8 6.8E-09 2.3E-13 62.1 3.9 30 9-38 8-37 (204)
134 2yl4_A ATP-binding cassette SU 98.8 1.9E-09 6.4E-14 73.7 1.5 34 4-37 361-394 (595)
135 2vli_A Antibiotic resistance p 98.8 5.6E-09 1.9E-13 60.9 3.4 31 12-42 4-34 (183)
136 2gza_A Type IV secretion syste 98.8 1.9E-09 6.7E-14 70.1 1.5 35 4-38 166-200 (361)
137 2xb4_A Adenylate kinase; ATP-b 98.7 8.4E-09 2.9E-13 62.7 4.0 33 15-47 2-34 (223)
138 3aez_A Pantothenate kinase; tr 98.7 6.7E-09 2.3E-13 66.6 3.7 28 10-37 87-114 (312)
139 1yqt_A RNAse L inhibitor; ATP- 98.7 7.8E-09 2.7E-13 70.3 4.1 30 6-36 41-70 (538)
140 2qmh_A HPR kinase/phosphorylas 98.7 4.6E-09 1.6E-13 64.5 2.7 42 12-54 33-74 (205)
141 2yhs_A FTSY, cell division pro 98.7 8.4E-09 2.9E-13 70.2 4.1 34 4-37 284-317 (503)
142 2og2_A Putative signal recogni 98.7 9.5E-09 3.3E-13 67.3 4.1 33 5-37 149-181 (359)
143 1gvn_B Zeta; postsegregational 98.7 8.7E-09 3E-13 65.2 3.8 37 11-47 31-69 (287)
144 2npi_A Protein CLP1; CLP1-PCF1 98.7 5.6E-09 1.9E-13 70.1 3.0 31 6-36 131-161 (460)
145 1iy2_A ATP-dependent metallopr 98.7 1.1E-08 3.7E-13 63.8 4.0 39 6-46 68-106 (278)
146 1svm_A Large T antigen; AAA+ f 98.7 1.2E-08 4.1E-13 67.1 4.2 38 6-43 162-199 (377)
147 1cr0_A DNA primase/helicase; R 98.7 9.7E-09 3.3E-13 64.4 3.6 32 5-36 27-58 (296)
148 3b85_A Phosphate starvation-in 98.7 3.2E-09 1.1E-13 64.7 1.4 27 10-36 19-45 (208)
149 4f4c_A Multidrug resistance pr 98.7 2.1E-09 7.3E-14 78.9 0.7 35 4-38 435-469 (1321)
150 1yqt_A RNAse L inhibitor; ATP- 98.7 8.2E-09 2.8E-13 70.2 3.5 31 6-36 305-335 (538)
151 1ye8_A Protein THEP1, hypothet 98.7 1.1E-08 3.9E-13 60.8 3.7 27 14-40 1-27 (178)
152 2eyu_A Twitching motility prot 98.7 1E-08 3.6E-13 64.2 3.6 28 10-37 22-49 (261)
153 2jaq_A Deoxyguanosine kinase; 98.7 1.9E-08 6.6E-13 59.2 4.6 30 14-43 1-30 (205)
154 3zvl_A Bifunctional polynucleo 98.7 1.5E-08 5E-13 66.9 4.4 40 9-48 254-293 (416)
155 3a4m_A L-seryl-tRNA(SEC) kinas 98.7 1.2E-08 4E-13 63.4 3.8 36 11-46 2-42 (260)
156 3ney_A 55 kDa erythrocyte memb 98.7 1.7E-08 5.9E-13 61.4 4.4 32 7-38 13-44 (197)
157 2p5t_B PEZT; postsegregational 98.7 1.1E-08 3.7E-13 63.3 3.5 37 10-46 29-67 (253)
158 3cf0_A Transitional endoplasmi 98.7 1.8E-08 6.2E-13 63.6 4.5 40 8-47 44-83 (301)
159 1nks_A Adenylate kinase; therm 98.7 7E-09 2.4E-13 60.6 2.3 32 14-45 2-38 (194)
160 2h92_A Cytidylate kinase; ross 98.7 1.5E-08 5.1E-13 60.8 3.8 35 13-47 3-37 (219)
161 2iw3_A Elongation factor 3A; a 98.7 8.7E-09 3E-13 74.4 3.1 32 4-35 452-483 (986)
162 3bk7_A ABC transporter ATP-bin 98.7 1.1E-08 3.7E-13 70.6 3.5 31 6-36 375-405 (607)
163 3ux8_A Excinuclease ABC, A sub 98.7 5E-09 1.7E-13 72.4 1.8 31 4-34 339-369 (670)
164 1rz3_A Hypothetical protein rb 98.7 2.8E-08 9.5E-13 59.5 4.9 33 10-42 19-54 (201)
165 2obl_A ESCN; ATPase, hydrolase 98.7 1.3E-08 4.4E-13 66.2 3.5 31 8-38 66-96 (347)
166 1nn5_A Similar to deoxythymidy 98.7 5.1E-09 1.7E-13 62.4 1.5 29 10-38 6-34 (215)
167 2f6r_A COA synthase, bifunctio 98.7 1.5E-08 5.3E-13 63.8 3.8 34 13-47 75-108 (281)
168 3kta_A Chromosome segregation 98.7 2.6E-08 8.8E-13 58.3 4.5 34 4-38 18-51 (182)
169 3ozx_A RNAse L inhibitor; ATP 98.7 9.2E-09 3.1E-13 70.1 2.9 30 7-36 288-317 (538)
170 2pt7_A CAG-ALFA; ATPase, prote 98.7 3E-09 1E-13 68.6 0.4 34 5-38 163-196 (330)
171 2z0h_A DTMP kinase, thymidylat 98.7 3E-08 1E-12 58.3 4.5 31 15-45 2-35 (197)
172 1a7j_A Phosphoribulokinase; tr 98.7 6.5E-09 2.2E-13 65.9 1.7 37 12-48 4-45 (290)
173 3g5u_A MCG1178, multidrug resi 98.7 3.2E-09 1.1E-13 77.8 0.2 35 4-38 407-441 (1284)
174 3euj_A Chromosome partition pr 98.6 1.7E-08 5.9E-13 68.3 3.7 33 4-37 21-53 (483)
175 2dpy_A FLII, flagellum-specifi 98.6 2E-08 6.7E-13 67.1 3.9 31 8-38 152-182 (438)
176 3bk7_A ABC transporter ATP-bin 98.6 1.7E-08 5.9E-13 69.6 3.6 28 9-36 113-140 (607)
177 2qag_B Septin-6, protein NEDD5 98.6 1E-08 3.5E-13 68.5 2.3 33 4-36 31-65 (427)
178 3ux8_A Excinuclease ABC, A sub 98.6 1.2E-08 4.1E-13 70.5 2.6 27 4-30 35-61 (670)
179 2plr_A DTMP kinase, probable t 98.6 2.4E-08 8.3E-13 59.1 3.7 28 12-39 3-30 (213)
180 1lv7_A FTSH; alpha/beta domain 98.6 5.1E-08 1.7E-12 59.9 5.1 34 13-46 45-78 (257)
181 2w0m_A SSO2452; RECA, SSPF, un 98.6 2.7E-08 9.1E-13 59.4 3.8 28 9-36 19-46 (235)
182 3g5u_A MCG1178, multidrug resi 98.6 1.2E-08 4.1E-13 74.9 2.4 35 4-38 1050-1084(1284)
183 2qm8_A GTPase/ATPase; G protei 98.6 2.3E-08 7.8E-13 64.6 3.3 32 5-36 47-78 (337)
184 1m7g_A Adenylylsulfate kinase; 98.6 1.6E-08 5.3E-13 60.8 2.4 31 8-38 20-50 (211)
185 2cvh_A DNA repair and recombin 98.6 6.1E-08 2.1E-12 57.7 4.9 36 9-44 16-51 (220)
186 1tf7_A KAIC; homohexamer, hexa 98.6 2.3E-08 7.8E-13 67.5 3.1 29 5-33 30-59 (525)
187 3j16_B RLI1P; ribosome recycli 98.6 3.7E-08 1.3E-12 68.0 4.1 28 9-36 99-126 (608)
188 3t15_A Ribulose bisphosphate c 98.6 4.8E-08 1.6E-12 61.7 4.3 37 11-47 34-70 (293)
189 3h4m_A Proteasome-activating n 98.6 6.1E-08 2.1E-12 60.0 4.6 37 10-46 48-84 (285)
190 2i3b_A HCR-ntpase, human cance 98.6 3.3E-08 1.1E-12 59.4 3.3 25 13-37 1-25 (189)
191 2iw3_A Elongation factor 3A; a 98.6 1.1E-08 3.8E-13 73.8 1.4 34 4-37 690-723 (986)
192 2kjq_A DNAA-related protein; s 98.6 3.6E-08 1.2E-12 57.1 3.2 26 12-37 35-60 (149)
193 4b4t_M 26S protease regulatory 98.6 5.9E-08 2E-12 65.0 4.6 40 9-48 211-250 (434)
194 2yvu_A Probable adenylyl-sulfa 98.6 3.8E-08 1.3E-12 57.9 3.1 31 8-38 8-38 (186)
195 3ozx_A RNAse L inhibitor; ATP 98.6 3.2E-08 1.1E-12 67.4 3.1 28 9-36 21-48 (538)
196 2vp4_A Deoxynucleoside kinase; 98.6 3.8E-08 1.3E-12 60.0 3.1 34 7-41 14-47 (230)
197 4b4t_L 26S protease subunit RP 98.6 6.9E-08 2.3E-12 64.7 4.6 39 9-47 211-249 (437)
198 2qz4_A Paraplegin; AAA+, SPG7, 98.6 9.1E-08 3.1E-12 58.4 4.8 35 11-45 37-71 (262)
199 4b4t_K 26S protease regulatory 98.6 7E-08 2.4E-12 64.5 4.5 40 9-48 202-241 (428)
200 3j16_B RLI1P; ribosome recycli 98.5 4.4E-08 1.5E-12 67.7 3.6 32 5-36 365-401 (608)
201 4b4t_J 26S protease regulatory 98.5 6.3E-08 2.1E-12 64.4 4.2 41 9-49 178-218 (405)
202 4aby_A DNA repair protein RECN 98.5 1.6E-08 5.5E-13 65.7 1.3 33 5-38 53-85 (415)
203 1rj9_A FTSY, signal recognitio 98.5 6.4E-08 2.2E-12 61.9 4.0 26 12-37 101-126 (304)
204 4eaq_A DTMP kinase, thymidylat 98.5 5.8E-08 2E-12 59.6 3.7 33 10-42 23-57 (229)
205 3gmt_A Adenylate kinase; ssgci 98.5 5.7E-08 1.9E-12 60.4 3.6 35 13-47 8-42 (230)
206 3tqc_A Pantothenate kinase; bi 98.5 7.8E-08 2.7E-12 62.1 4.3 34 14-47 93-133 (321)
207 3cr8_A Sulfate adenylyltranfer 98.5 4.8E-08 1.6E-12 66.9 3.4 30 9-38 365-394 (552)
208 1ltq_A Polynucleotide kinase; 98.5 5.7E-08 1.9E-12 60.8 3.4 33 14-46 3-36 (301)
209 1tq4_A IIGP1, interferon-induc 98.5 2.1E-08 7.1E-13 66.7 1.4 21 15-35 71-91 (413)
210 2oap_1 GSPE-2, type II secreti 98.5 2.1E-08 7.1E-13 68.0 1.4 33 5-37 252-284 (511)
211 3fdi_A Uncharacterized protein 98.5 1.3E-07 4.6E-12 57.0 4.7 31 13-43 6-36 (201)
212 3b9p_A CG5977-PA, isoform A; A 98.5 1.5E-07 5.1E-12 58.7 5.0 34 12-45 53-86 (297)
213 1n0w_A DNA repair protein RAD5 98.5 6.8E-08 2.3E-12 58.3 3.3 28 9-36 20-47 (243)
214 2ewv_A Twitching motility prot 98.5 6.3E-08 2.1E-12 63.3 3.4 29 9-37 132-160 (372)
215 3thx_B DNA mismatch repair pro 98.5 4.8E-08 1.6E-12 70.1 3.0 31 4-34 664-694 (918)
216 2dhr_A FTSH; AAA+ protein, hex 98.5 1.4E-07 4.9E-12 63.9 5.1 39 7-47 60-98 (499)
217 1ypw_A Transitional endoplasmi 98.5 1.2E-07 4.2E-12 67.0 4.7 42 5-46 230-271 (806)
218 1pzn_A RAD51, DNA repair and r 98.5 1.2E-07 3.9E-12 61.5 4.3 31 7-37 125-155 (349)
219 3e70_C DPA, signal recognition 98.5 8.9E-08 3E-12 61.9 3.6 27 11-37 127-153 (328)
220 4b4t_H 26S protease regulatory 98.5 1.1E-07 3.8E-12 64.2 4.1 41 8-48 238-278 (467)
221 1in4_A RUVB, holliday junction 98.5 1.5E-07 5.1E-12 60.2 4.5 28 14-41 52-79 (334)
222 4b4t_I 26S protease regulatory 98.5 1.7E-07 5.7E-12 63.0 4.6 41 9-49 212-252 (437)
223 3thx_A DNA mismatch repair pro 98.5 1.1E-07 3.7E-12 68.4 3.6 31 4-34 653-683 (934)
224 1x6v_B Bifunctional 3'-phospho 98.5 1.9E-07 6.4E-12 65.0 4.7 38 12-49 51-91 (630)
225 3sop_A Neuronal-specific septi 98.4 1.4E-07 4.7E-12 59.4 3.6 23 15-37 4-26 (270)
226 3hws_A ATP-dependent CLP prote 98.4 2E-07 6.8E-12 60.0 4.4 36 12-47 50-85 (363)
227 3jvv_A Twitching mobility prot 98.4 9.2E-08 3.1E-12 62.4 2.8 29 9-37 119-147 (356)
228 3m6a_A ATP-dependent protease 98.4 2.6E-07 8.9E-12 62.8 5.1 34 8-42 104-137 (543)
229 1nlf_A Regulatory protein REPA 98.4 1.4E-07 4.7E-12 58.8 3.4 27 9-35 26-52 (279)
230 1odf_A YGR205W, hypothetical 3 98.4 1.5E-07 5.1E-12 59.8 3.6 38 11-48 29-74 (290)
231 1wb9_A DNA mismatch repair pro 98.4 1.5E-07 5E-12 66.8 3.8 31 4-35 599-629 (800)
232 1jbk_A CLPB protein; beta barr 98.4 4.6E-07 1.6E-11 52.0 5.2 26 12-37 42-67 (195)
233 1pui_A ENGB, probable GTP-bind 98.4 8.2E-08 2.8E-12 56.8 1.9 28 8-35 21-48 (210)
234 3eie_A Vacuolar protein sortin 98.4 3.4E-07 1.2E-11 58.2 4.9 35 12-46 50-84 (322)
235 1ex7_A Guanylate kinase; subst 98.4 1.8E-07 6.2E-12 56.3 3.4 25 14-38 2-26 (186)
236 3qf7_A RAD50; ABC-ATPase, ATPa 98.4 1.8E-07 6.2E-12 60.9 3.2 28 6-34 17-44 (365)
237 2p65_A Hypothetical protein PF 98.4 3.9E-07 1.3E-11 52.4 4.3 26 12-37 42-67 (187)
238 1gtv_A TMK, thymidylate kinase 98.4 1.2E-07 4.1E-12 56.4 2.1 25 14-38 1-25 (214)
239 2f1r_A Molybdopterin-guanine d 98.4 1.3E-07 4.4E-12 56.1 2.3 24 14-37 3-26 (171)
240 1ofh_A ATP-dependent HSL prote 98.4 4.4E-07 1.5E-11 56.3 4.7 33 13-45 50-82 (310)
241 2yv5_A YJEQ protein; hydrolase 98.4 2.1E-07 7.1E-12 59.2 3.2 28 9-37 161-188 (302)
242 3hdt_A Putative kinase; struct 98.4 3.2E-07 1.1E-11 56.5 3.9 33 13-45 14-46 (223)
243 1d2n_A N-ethylmaleimide-sensit 98.4 3.3E-07 1.1E-11 56.7 3.9 34 12-45 63-96 (272)
244 1p9r_A General secretion pathw 98.4 2.8E-07 9.4E-12 61.3 3.7 28 11-38 165-192 (418)
245 1um8_A ATP-dependent CLP prote 98.4 4.1E-07 1.4E-11 58.7 4.4 34 13-46 72-105 (376)
246 3d8b_A Fidgetin-like protein 1 98.4 6.3E-07 2.2E-11 57.8 5.3 35 12-46 116-150 (357)
247 1l8q_A Chromosomal replication 98.4 3.7E-07 1.3E-11 57.7 4.0 33 13-45 37-72 (324)
248 1vma_A Cell division protein F 98.4 3.7E-07 1.3E-11 58.5 3.9 31 7-37 98-128 (306)
249 4i1u_A Dephospho-COA kinase; s 98.3 3.7E-07 1.3E-11 56.0 3.8 33 14-47 10-42 (210)
250 2dr3_A UPF0273 protein PH0284; 98.3 3.3E-07 1.1E-11 55.3 3.5 27 9-35 19-45 (247)
251 2ga8_A Hypothetical 39.9 kDa p 98.3 7.7E-08 2.6E-12 63.2 0.7 35 7-41 16-52 (359)
252 1xwi_A SKD1 protein; VPS4B, AA 98.3 6.1E-07 2.1E-11 57.3 4.9 34 12-45 44-78 (322)
253 1zu4_A FTSY; GTPase, signal re 98.3 4.1E-07 1.4E-11 58.5 4.0 33 4-36 96-128 (320)
254 2qp9_X Vacuolar protein sortin 98.3 5E-07 1.7E-11 58.4 4.4 35 12-46 83-117 (355)
255 2o5v_A DNA replication and rep 98.3 3.3E-07 1.1E-11 59.9 3.5 30 5-35 19-48 (359)
256 1u0l_A Probable GTPase ENGC; p 98.3 1.6E-07 5.6E-12 59.6 2.0 29 8-36 164-192 (301)
257 1g8f_A Sulfate adenylyltransfe 98.3 3.1E-07 1.1E-11 62.5 3.4 36 11-46 393-435 (511)
258 3vfd_A Spastin; ATPase, microt 98.3 7.9E-07 2.7E-11 57.8 5.2 34 13-46 148-181 (389)
259 2ce7_A Cell division protein F 98.3 7E-07 2.4E-11 60.2 5.0 33 14-46 50-82 (476)
260 2r62_A Cell division protease 98.3 1E-07 3.6E-12 58.6 0.9 33 13-45 44-76 (268)
261 3bos_A Putative DNA replicatio 98.3 6.3E-07 2.2E-11 53.5 4.0 26 12-37 51-76 (242)
262 3cf2_A TER ATPase, transitiona 98.3 6.9E-07 2.4E-11 63.6 4.8 43 6-48 231-273 (806)
263 1t9h_A YLOQ, probable GTPase E 98.3 1.6E-07 5.6E-12 60.3 1.5 28 8-35 168-195 (307)
264 2c9o_A RUVB-like 1; hexameric 98.3 8.5E-07 2.9E-11 58.9 4.9 37 12-48 62-100 (456)
265 1g41_A Heat shock protein HSLU 98.3 7.8E-07 2.7E-11 59.7 4.7 34 13-46 50-83 (444)
266 1ewq_A DNA mismatch repair pro 98.3 4E-07 1.4E-11 64.3 3.4 23 13-35 576-598 (765)
267 2ygr_A Uvrabc system protein A 98.3 2E-07 6.7E-12 67.5 1.8 30 4-33 659-688 (993)
268 1sxj_A Activator 1 95 kDa subu 98.3 1.1E-06 3.9E-11 59.1 5.2 34 13-46 77-110 (516)
269 3syl_A Protein CBBX; photosynt 98.3 1.4E-06 4.9E-11 54.3 5.4 26 12-37 66-91 (309)
270 2qby_A CDC6 homolog 1, cell di 98.3 9.2E-07 3.2E-11 55.9 4.5 35 11-45 43-83 (386)
271 3pfi_A Holliday junction ATP-d 98.3 9E-07 3.1E-11 56.0 4.4 32 14-45 56-87 (338)
272 2px0_A Flagellar biosynthesis 98.3 8.4E-07 2.9E-11 56.5 4.1 26 11-36 103-128 (296)
273 1tue_A Replication protein E1; 98.3 7.7E-07 2.6E-11 54.9 3.8 35 10-44 55-89 (212)
274 2o8b_B DNA mismatch repair pro 98.3 5.7E-07 1.9E-11 65.2 3.6 31 4-34 773-810 (1022)
275 2rcn_A Probable GTPase ENGC; Y 98.3 6.9E-07 2.4E-11 58.5 3.6 26 11-36 213-238 (358)
276 1m8p_A Sulfate adenylyltransfe 98.2 6E-07 2.1E-11 61.6 3.4 38 11-48 394-435 (573)
277 2r6f_A Excinuclease ABC subuni 98.2 1.9E-07 6.4E-12 67.5 0.9 31 4-34 641-671 (972)
278 1ypw_A Transitional endoplasmi 98.2 3E-07 1E-11 65.0 1.8 41 6-46 504-544 (806)
279 1nij_A Hypothetical protein YJ 98.2 4.2E-07 1.4E-11 58.0 2.3 25 12-36 3-27 (318)
280 1tf7_A KAIC; homohexamer, hexa 98.2 9.1E-07 3.1E-11 59.7 3.8 30 7-36 275-304 (525)
281 2zan_A Vacuolar protein sortin 98.2 1.9E-06 6.4E-11 57.2 5.3 34 12-45 166-200 (444)
282 1np6_A Molybdopterin-guanine d 98.2 1.2E-06 4.2E-11 52.1 3.9 24 13-36 6-29 (174)
283 1e69_A Chromosome segregation 98.2 5.4E-07 1.9E-11 57.4 2.5 30 6-36 18-47 (322)
284 2w58_A DNAI, primosome compone 98.2 1.2E-06 4.1E-11 51.8 3.8 24 14-37 55-78 (202)
285 3n70_A Transport activator; si 98.2 8.9E-07 3E-11 50.5 3.1 26 12-37 23-48 (145)
286 3lda_A DNA repair protein RAD5 98.2 8.8E-07 3E-11 58.6 3.4 25 10-34 175-199 (400)
287 2vf7_A UVRA2, excinuclease ABC 98.2 2.8E-07 9.4E-12 65.8 1.1 31 4-34 514-545 (842)
288 1sxj_C Activator 1 40 kDa subu 98.2 4.1E-07 1.4E-11 58.0 1.7 28 10-37 41-70 (340)
289 3v9p_A DTMP kinase, thymidylat 98.2 8.3E-07 2.9E-11 54.8 3.0 29 9-37 21-49 (227)
290 1oix_A RAS-related protein RAB 98.2 1.1E-06 3.9E-11 51.7 3.4 23 14-36 30-52 (191)
291 3hu3_A Transitional endoplasmi 98.2 1.4E-06 4.9E-11 58.8 4.3 37 10-46 235-271 (489)
292 1w1w_A Structural maintenance 98.2 1.7E-06 5.9E-11 56.9 4.4 31 8-38 21-51 (430)
293 3tmk_A Thymidylate kinase; pho 98.2 1.9E-06 6.5E-11 52.8 4.3 30 10-39 2-31 (216)
294 1udx_A The GTP-binding protein 98.2 5.5E-07 1.9E-11 59.9 2.0 33 4-36 148-180 (416)
295 1fnn_A CDC6P, cell division co 98.2 2.4E-06 8.1E-11 54.4 4.9 31 15-45 46-80 (389)
296 2v1u_A Cell division control p 98.2 1.3E-06 4.4E-11 55.4 3.6 27 11-37 42-68 (387)
297 4fcw_A Chaperone protein CLPB; 98.2 1.2E-06 4.2E-11 54.5 3.4 24 14-37 48-71 (311)
298 3k1j_A LON protease, ATP-depen 98.2 4.9E-07 1.7E-11 61.9 1.7 33 6-38 53-85 (604)
299 2qby_B CDC6 homolog 3, cell di 98.2 2.7E-06 9.1E-11 54.2 5.0 33 13-45 45-88 (384)
300 2ocp_A DGK, deoxyguanosine kin 98.2 2.5E-06 8.4E-11 52.1 4.4 26 13-38 2-27 (241)
301 2f9l_A RAB11B, member RAS onco 98.2 1.4E-06 4.9E-11 51.3 3.3 23 14-36 6-28 (199)
302 3hr8_A Protein RECA; alpha and 98.2 1.8E-06 6.1E-11 56.5 4.0 36 10-45 58-96 (356)
303 3pih_A Uvrabc system protein A 98.2 8.7E-07 3E-11 63.7 2.7 27 4-30 601-627 (916)
304 3pvs_A Replication-associated 98.1 2.5E-06 8.4E-11 57.0 4.6 32 14-45 51-82 (447)
305 1xjc_A MOBB protein homolog; s 98.1 2E-06 6.9E-11 51.2 3.8 25 13-37 4-28 (169)
306 3uk6_A RUVB-like 2; hexameric 98.1 2E-06 6.9E-11 54.7 4.0 27 13-39 70-96 (368)
307 2p67_A LAO/AO transport system 98.1 1.5E-06 5.1E-11 55.9 3.4 31 6-36 49-79 (341)
308 2r44_A Uncharacterized protein 98.1 1.5E-06 5.2E-11 54.9 3.3 31 13-43 46-76 (331)
309 2z4s_A Chromosomal replication 98.1 1.9E-06 6.5E-11 57.2 3.9 33 13-45 130-167 (440)
310 3co5_A Putative two-component 98.1 7.5E-07 2.6E-11 50.8 1.6 33 12-45 26-58 (143)
311 1ls1_A Signal recognition part 98.1 2.2E-06 7.4E-11 54.4 3.9 29 6-36 93-121 (295)
312 1p5z_B DCK, deoxycytidine kina 98.1 7.8E-07 2.7E-11 55.0 1.7 32 11-42 22-54 (263)
313 3cf2_A TER ATPase, transitiona 98.1 2.8E-06 9.7E-11 60.5 4.7 41 9-49 507-547 (806)
314 1hqc_A RUVB; extended AAA-ATPa 98.1 1.7E-06 5.9E-11 54.1 3.2 32 13-44 38-69 (324)
315 1njg_A DNA polymerase III subu 98.1 2.5E-06 8.5E-11 50.3 3.8 25 14-38 46-70 (250)
316 2z43_A DNA repair and recombin 98.1 3.4E-06 1.2E-10 53.8 4.6 28 9-36 103-130 (324)
317 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 2.2E-06 7.7E-11 49.5 3.3 22 14-35 24-45 (149)
318 2gj8_A MNME, tRNA modification 98.1 2.3E-06 7.8E-11 49.6 3.2 25 12-36 3-27 (172)
319 2zr9_A Protein RECA, recombina 98.1 3.7E-06 1.3E-10 54.6 4.4 26 10-35 58-83 (349)
320 1v5w_A DMC1, meiotic recombina 98.1 4.5E-06 1.5E-10 53.8 4.6 28 9-36 118-145 (343)
321 3lv8_A DTMP kinase, thymidylat 98.1 3.8E-06 1.3E-10 52.1 4.0 27 11-37 25-51 (236)
322 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 3.5E-06 1.2E-10 55.7 4.1 27 9-35 16-42 (392)
323 1sxj_E Activator 1 40 kDa subu 98.1 2.4E-06 8.3E-11 54.1 3.1 23 14-36 37-59 (354)
324 4edh_A DTMP kinase, thymidylat 98.1 3E-06 1E-10 51.6 3.4 27 11-37 4-30 (213)
325 2chg_A Replication factor C sm 98.1 3.5E-06 1.2E-10 49.3 3.5 24 14-37 39-62 (226)
326 1qhl_A Protein (cell division 98.1 8E-08 2.7E-12 59.4 -3.8 29 8-37 23-51 (227)
327 3ice_A Transcription terminati 98.0 1.6E-06 5.6E-11 57.9 2.2 32 5-36 166-197 (422)
328 3pxg_A Negative regulator of g 98.0 4.8E-06 1.6E-10 55.6 4.3 26 12-37 200-225 (468)
329 2www_A Methylmalonic aciduria 98.0 3.3E-06 1.1E-10 54.6 3.3 24 13-36 74-97 (349)
330 2axn_A 6-phosphofructo-2-kinas 98.0 3.2E-06 1.1E-10 57.4 3.3 27 12-38 34-60 (520)
331 2wji_A Ferrous iron transport 98.0 4.1E-06 1.4E-10 48.0 3.3 22 14-35 4-25 (165)
332 2qgz_A Helicase loader, putati 98.0 5.1E-06 1.7E-10 52.9 4.0 24 13-36 152-175 (308)
333 2bjv_A PSP operon transcriptio 98.0 6E-06 2E-10 50.7 4.2 34 12-45 28-64 (265)
334 3szr_A Interferon-induced GTP- 98.0 2.5E-06 8.6E-11 58.7 2.6 21 16-36 48-68 (608)
335 4tmk_A Protein (thymidylate ki 98.0 6.2E-06 2.1E-10 50.3 4.0 26 12-37 2-27 (213)
336 2qnr_A Septin-2, protein NEDD5 98.0 4.1E-06 1.4E-10 53.2 3.2 21 15-35 20-40 (301)
337 1bif_A 6-phosphofructo-2-kinas 98.0 1.3E-06 4.3E-11 58.3 0.8 27 12-38 38-64 (469)
338 2zts_A Putative uncharacterize 98.0 5.1E-06 1.8E-10 50.0 3.4 25 10-34 27-51 (251)
339 3ld9_A DTMP kinase, thymidylat 98.0 5.6E-06 1.9E-10 51.0 3.5 28 11-38 19-46 (223)
340 3u61_B DNA polymerase accessor 98.0 6.6E-06 2.3E-10 51.8 3.9 32 14-45 49-80 (324)
341 1c9k_A COBU, adenosylcobinamid 98.0 4.8E-06 1.6E-10 50.0 3.0 30 16-46 2-31 (180)
342 3tqf_A HPR(Ser) kinase; transf 98.0 1.1E-05 3.7E-10 48.7 4.5 35 11-46 14-48 (181)
343 1sxj_D Activator 1 41 kDa subu 98.0 6.3E-06 2.2E-10 51.9 3.7 24 14-37 59-82 (353)
344 2wjg_A FEOB, ferrous iron tran 98.0 6.1E-06 2.1E-10 47.7 3.3 22 14-35 8-29 (188)
345 2zej_A Dardarin, leucine-rich 97.9 4.8E-06 1.7E-10 48.5 2.8 22 14-35 3-24 (184)
346 2orw_A Thymidine kinase; TMTK, 97.9 9.4E-06 3.2E-10 48.3 4.0 25 12-36 2-26 (184)
347 2qag_C Septin-7; cell cycle, c 97.9 3.7E-06 1.3E-10 55.9 2.4 22 15-36 33-54 (418)
348 3qks_A DNA double-strand break 97.9 6.6E-06 2.3E-10 49.5 3.3 24 14-37 24-47 (203)
349 1ega_A Protein (GTP-binding pr 97.9 4.7E-06 1.6E-10 52.8 2.8 25 11-35 6-30 (301)
350 3qkt_A DNA double-strand break 97.9 7.2E-06 2.5E-10 52.6 3.3 21 14-34 24-44 (339)
351 3pxi_A Negative regulator of g 97.9 1.1E-05 3.6E-10 56.4 4.3 26 12-37 200-225 (758)
352 2vf7_A UVRA2, excinuclease ABC 97.9 4.7E-06 1.6E-10 59.6 2.6 27 5-31 28-54 (842)
353 3te6_A Regulatory protein SIR3 97.9 9.3E-06 3.2E-10 52.4 3.6 27 11-37 43-69 (318)
354 3bh0_A DNAB-like replicative h 97.9 1.1E-05 3.7E-10 51.4 3.9 27 10-36 65-91 (315)
355 2r6a_A DNAB helicase, replicat 97.9 1.1E-05 3.9E-10 53.5 4.1 27 9-35 199-225 (454)
356 2gks_A Bifunctional SAT/APS ki 97.9 4.5E-06 1.6E-10 57.0 2.2 27 12-38 371-397 (546)
357 1u94_A RECA protein, recombina 97.9 1.5E-05 5.2E-10 51.9 4.4 36 10-45 60-98 (356)
358 3pih_A Uvrabc system protein A 97.9 5.1E-06 1.7E-10 59.8 2.3 26 5-30 16-41 (916)
359 1j8m_F SRP54, signal recogniti 97.9 7.4E-06 2.5E-10 52.2 2.8 31 6-37 92-122 (297)
360 3kkq_A RAS-related protein M-R 97.9 1E-05 3.5E-10 46.5 3.2 22 14-35 19-40 (183)
361 1svi_A GTP-binding protein YSX 97.9 2.2E-05 7.4E-10 45.5 4.6 24 12-35 22-45 (195)
362 2ffh_A Protein (FFH); SRP54, s 97.9 1.2E-05 4.2E-10 53.6 3.9 30 6-37 93-122 (425)
363 2lkc_A Translation initiation 97.9 1.4E-05 4.9E-10 45.6 3.7 25 11-35 6-30 (178)
364 2ged_A SR-beta, signal recogni 97.9 1.5E-05 5.1E-10 46.3 3.8 25 12-36 47-71 (193)
365 1r6b_X CLPA protein; AAA+, N-t 97.9 1.5E-05 5E-10 55.5 4.4 31 15-45 490-520 (758)
366 2ygr_A Uvrabc system protein A 97.9 6.6E-06 2.3E-10 59.7 2.7 27 5-31 38-64 (993)
367 1z0f_A RAB14, member RAS oncog 97.9 9.1E-06 3.1E-10 46.3 2.8 24 12-35 14-37 (179)
368 1qvr_A CLPB protein; coiled co 97.9 1.4E-05 4.9E-10 56.6 4.3 33 13-45 191-233 (854)
369 1upt_A ARL1, ADP-ribosylation 97.9 1.4E-05 4.6E-10 45.3 3.4 25 11-35 5-29 (171)
370 2r6f_A Excinuclease ABC subuni 97.9 7E-06 2.4E-10 59.5 2.7 27 5-31 36-62 (972)
371 2i1q_A DNA repair and recombin 97.8 9.4E-06 3.2E-10 51.4 3.0 27 10-36 95-121 (322)
372 1z2a_A RAS-related protein RAB 97.8 1.5E-05 5E-10 44.9 3.3 22 14-35 6-27 (168)
373 2ce2_X GTPase HRAS; signaling 97.8 1.6E-05 5.5E-10 44.4 3.4 22 15-36 5-26 (166)
374 2fna_A Conserved hypothetical 97.8 2.3E-05 7.9E-10 49.0 4.4 29 14-42 31-59 (357)
375 3kl4_A SRP54, signal recogniti 97.8 1.2E-05 3.9E-10 53.9 3.2 25 12-36 96-120 (433)
376 2dyk_A GTP-binding protein; GT 97.8 1.6E-05 5.4E-10 44.6 3.3 22 15-36 3-24 (161)
377 2vhj_A Ntpase P4, P4; non- hyd 97.8 9.5E-06 3.2E-10 52.8 2.5 28 10-37 120-147 (331)
378 3pqc_A Probable GTP-binding pr 97.8 3.1E-05 1.1E-09 44.6 4.5 24 13-36 23-46 (195)
379 1kao_A RAP2A; GTP-binding prot 97.8 1.7E-05 5.9E-10 44.4 3.3 22 14-35 4-25 (167)
380 4ad8_A DNA repair protein RECN 97.8 6.2E-06 2.1E-10 55.5 1.7 32 6-38 54-85 (517)
381 1g8p_A Magnesium-chelatase 38 97.8 6.6E-06 2.2E-10 51.9 1.7 25 14-38 46-70 (350)
382 1dek_A Deoxynucleoside monopho 97.8 1.6E-05 5.5E-10 49.5 3.4 33 14-46 2-34 (241)
383 3lxx_A GTPase IMAP family memb 97.8 1.6E-05 5.6E-10 48.2 3.3 22 14-35 30-51 (239)
384 1u8z_A RAS-related protein RAL 97.8 1.9E-05 6.4E-10 44.3 3.3 22 14-35 5-26 (168)
385 1jr3_A DNA polymerase III subu 97.8 2E-05 6.9E-10 49.9 3.8 25 14-38 39-63 (373)
386 2nzj_A GTP-binding protein REM 97.8 1.9E-05 6.5E-10 44.8 3.3 21 14-34 5-25 (175)
387 3k53_A Ferrous iron transport 97.8 1.8E-05 6E-10 49.1 3.4 22 14-35 4-25 (271)
388 1f6b_A SAR1; gtpases, N-termin 97.8 1.4E-05 4.9E-10 47.1 2.8 27 7-34 20-46 (198)
389 2erx_A GTP-binding protein DI- 97.8 2E-05 6.9E-10 44.4 3.3 22 14-35 4-25 (172)
390 1nrj_B SR-beta, signal recogni 97.8 2.7E-05 9.3E-10 46.1 4.0 24 13-36 12-35 (218)
391 1g16_A RAS-related protein SEC 97.8 2.2E-05 7.5E-10 44.3 3.4 22 14-35 4-25 (170)
392 1ky3_A GTP-binding protein YPT 97.8 2.1E-05 7.1E-10 44.8 3.3 22 14-35 9-30 (182)
393 3q85_A GTP-binding protein REM 97.8 2.2E-05 7.4E-10 44.4 3.3 20 15-34 4-23 (169)
394 1iqp_A RFCS; clamp loader, ext 97.8 2.5E-05 8.7E-10 48.5 3.9 24 14-37 47-70 (327)
395 1ek0_A Protein (GTP-binding pr 97.8 2.2E-05 7.6E-10 44.2 3.3 21 15-35 5-25 (170)
396 1ko7_A HPR kinase/phosphatase; 97.8 3.4E-05 1.2E-09 49.8 4.6 33 12-45 143-175 (314)
397 1r6b_X CLPA protein; AAA+, N-t 97.8 4.4E-05 1.5E-09 53.2 5.4 26 12-37 206-231 (758)
398 4ag6_A VIRB4 ATPase, type IV s 97.8 2.7E-05 9.2E-10 50.5 4.1 24 12-35 34-57 (392)
399 3q72_A GTP-binding protein RAD 97.8 2.1E-05 7.3E-10 44.3 3.3 21 14-34 3-23 (166)
400 1z08_A RAS-related protein RAB 97.8 2.2E-05 7.6E-10 44.3 3.3 22 14-35 7-28 (170)
401 1wms_A RAB-9, RAB9, RAS-relate 97.8 2.2E-05 7.6E-10 44.7 3.3 22 14-35 8-29 (177)
402 1c1y_A RAS-related protein RAP 97.8 2.3E-05 7.8E-10 44.1 3.3 22 14-35 4-25 (167)
403 3bwd_D RAC-like GTP-binding pr 97.8 2.7E-05 9.3E-10 44.5 3.7 24 12-35 7-30 (182)
404 2wsm_A Hydrogenase expression/ 97.8 2.6E-05 8.9E-10 46.3 3.7 26 12-37 29-54 (221)
405 1z0j_A RAB-22, RAS-related pro 97.8 2.3E-05 7.9E-10 44.2 3.3 23 14-36 7-29 (170)
406 2dy1_A Elongation factor G; tr 97.7 2.1E-05 7.3E-10 54.7 3.7 31 7-37 3-33 (665)
407 2qen_A Walker-type ATPase; unk 97.7 3.2E-05 1.1E-09 48.3 4.1 31 13-43 31-61 (350)
408 2fn4_A P23, RAS-related protei 97.7 2.5E-05 8.6E-10 44.4 3.4 23 14-36 10-32 (181)
409 3cpj_B GTP-binding protein YPT 97.7 1.6E-05 5.5E-10 47.5 2.7 24 12-35 12-35 (223)
410 1m2o_B GTP-binding protein SAR 97.7 2.7E-05 9.3E-10 45.6 3.6 23 13-35 23-45 (190)
411 3llm_A ATP-dependent RNA helic 97.7 1.4E-05 4.9E-10 48.5 2.4 25 10-34 73-97 (235)
412 2cxx_A Probable GTP-binding pr 97.7 2.6E-05 9E-10 44.9 3.4 21 15-35 3-23 (190)
413 3nbx_X ATPase RAVA; AAA+ ATPas 97.7 1.7E-05 5.9E-10 53.7 3.0 27 12-38 40-66 (500)
414 2y8e_A RAB-protein 6, GH09086P 97.7 2.8E-05 9.6E-10 44.2 3.4 22 14-35 15-36 (179)
415 1r2q_A RAS-related protein RAB 97.7 2.7E-05 9.3E-10 43.8 3.3 22 14-35 7-28 (170)
416 1moz_A ARL1, ADP-ribosylation 97.7 1.8E-05 6.1E-10 45.4 2.6 24 11-34 16-39 (183)
417 3bc1_A RAS-related protein RAB 97.7 2.7E-05 9.1E-10 44.7 3.3 22 14-35 12-33 (195)
418 1x3s_A RAS-related protein RAB 97.7 1.7E-05 5.7E-10 45.9 2.4 24 12-35 14-37 (195)
419 2hf9_A Probable hydrogenase ni 97.7 3.2E-05 1.1E-09 46.1 3.7 26 12-37 37-62 (226)
420 4dsu_A GTPase KRAS, isoform 2B 97.7 2.8E-05 9.6E-10 44.6 3.3 22 14-35 5-26 (189)
421 3tw8_B RAS-related protein RAB 97.7 2.6E-05 8.8E-10 44.4 3.1 21 14-34 10-30 (181)
422 2q6t_A DNAB replication FORK h 97.7 3.2E-05 1.1E-09 51.2 4.0 26 10-35 197-222 (444)
423 3con_A GTPase NRAS; structural 97.7 3E-05 1E-09 44.9 3.3 23 14-36 22-44 (190)
424 3clv_A RAB5 protein, putative; 97.7 3E-05 1E-09 44.7 3.3 24 13-36 7-30 (208)
425 2a9k_A RAS-related protein RAL 97.7 3E-05 1E-09 44.3 3.3 22 14-35 19-40 (187)
426 1xp8_A RECA protein, recombina 97.7 4.4E-05 1.5E-09 49.9 4.4 27 10-36 71-97 (366)
427 2hxs_A RAB-26, RAS-related pro 97.7 3.1E-05 1.1E-09 44.1 3.3 22 14-35 7-28 (178)
428 3pxi_A Negative regulator of g 97.7 3.5E-05 1.2E-09 53.8 4.2 31 15-45 523-556 (758)
429 3auy_A DNA double-strand break 97.7 2.8E-05 9.5E-10 50.4 3.4 22 14-35 26-47 (371)
430 1fzq_A ADP-ribosylation factor 97.7 3.1E-05 1E-09 44.9 3.3 23 13-35 16-38 (181)
431 1r8s_A ADP-ribosylation factor 97.7 3.3E-05 1.1E-09 43.5 3.3 21 15-35 2-22 (164)
432 2chq_A Replication factor C sm 97.7 2.8E-05 9.5E-10 48.2 3.2 23 15-37 40-62 (319)
433 2bme_A RAB4A, RAS-related prot 97.7 2.9E-05 9.8E-10 44.6 3.1 24 12-35 9-32 (186)
434 3io5_A Recombination and repai 97.7 5.9E-05 2E-09 49.2 4.7 36 10-46 26-66 (333)
435 2oil_A CATX-8, RAS-related pro 97.7 3.4E-05 1.2E-09 44.8 3.3 22 14-35 26-47 (193)
436 2efe_B Small GTP-binding prote 97.7 3.6E-05 1.2E-09 43.9 3.3 22 14-35 13-34 (181)
437 1u0j_A DNA replication protein 97.7 5.7E-05 2E-09 47.8 4.5 26 12-37 103-128 (267)
438 3t5g_A GTP-binding protein RHE 97.7 3.9E-05 1.3E-09 44.0 3.4 22 14-35 7-28 (181)
439 1m7b_A RND3/RHOE small GTP-bin 97.7 3.8E-05 1.3E-09 44.4 3.4 22 14-35 8-29 (184)
440 2b8t_A Thymidine kinase; deoxy 97.7 3.7E-05 1.3E-09 47.4 3.4 27 11-37 10-36 (223)
441 2g6b_A RAS-related protein RAB 97.7 3.9E-05 1.3E-09 43.8 3.3 23 13-35 10-32 (180)
442 3ihw_A Centg3; RAS, centaurin, 97.7 3.8E-05 1.3E-09 44.8 3.3 22 14-35 21-42 (184)
443 3tkl_A RAS-related protein RAB 97.7 3.9E-05 1.3E-09 44.4 3.3 22 14-35 17-38 (196)
444 4a1f_A DNAB helicase, replicat 97.7 4.7E-05 1.6E-09 49.5 4.0 34 9-42 42-78 (338)
445 2bov_A RAla, RAS-related prote 97.6 3.9E-05 1.3E-09 44.7 3.3 22 14-35 15-36 (206)
446 3p32_A Probable GTPase RV1496/ 97.6 3.9E-05 1.3E-09 49.5 3.5 26 12-37 78-103 (355)
447 1sxj_B Activator 1 37 kDa subu 97.6 3.7E-05 1.3E-09 47.7 3.3 23 15-37 44-66 (323)
448 1mh1_A RAC1; GTP-binding, GTPa 97.6 4.2E-05 1.4E-09 43.8 3.3 22 14-35 6-27 (186)
449 3t1o_A Gliding protein MGLA; G 97.6 4.4E-05 1.5E-09 44.0 3.4 23 14-36 15-37 (198)
450 3t34_A Dynamin-related protein 97.6 4.4E-05 1.5E-09 49.1 3.7 21 15-35 36-56 (360)
451 1vg8_A RAS-related protein RAB 97.6 4.3E-05 1.5E-09 44.7 3.3 23 13-35 8-30 (207)
452 4hlc_A DTMP kinase, thymidylat 97.6 4.1E-05 1.4E-09 46.3 3.3 30 13-42 2-33 (205)
453 2p5s_A RAS and EF-hand domain 97.6 3.7E-05 1.3E-09 45.1 3.0 24 12-35 27-50 (199)
454 1qvr_A CLPB protein; coiled co 97.6 3.5E-05 1.2E-09 54.6 3.4 32 14-45 589-623 (854)
455 2gf0_A GTP-binding protein DI- 97.6 4.7E-05 1.6E-09 44.2 3.4 23 13-35 8-30 (199)
456 2fg5_A RAB-22B, RAS-related pr 97.6 4.7E-05 1.6E-09 44.4 3.4 22 14-35 24-45 (192)
457 1zj6_A ADP-ribosylation factor 97.6 4.8E-05 1.7E-09 44.0 3.4 24 12-35 15-38 (187)
458 3oes_A GTPase rhebl1; small GT 97.6 4.8E-05 1.6E-09 44.6 3.4 24 12-35 23-46 (201)
459 3iby_A Ferrous iron transport 97.6 4.8E-05 1.6E-09 47.2 3.6 22 14-35 2-23 (256)
460 2gf9_A RAS-related protein RAB 97.6 4.7E-05 1.6E-09 44.1 3.3 22 14-35 23-44 (189)
461 1ojl_A Transcriptional regulat 97.6 5.1E-05 1.8E-09 48.1 3.7 26 12-37 24-49 (304)
462 2fh5_B SR-beta, signal recogni 97.6 5.1E-05 1.7E-09 44.8 3.5 23 13-35 7-29 (214)
463 3dz8_A RAS-related protein RAB 97.6 5.1E-05 1.7E-09 44.1 3.4 23 14-36 24-46 (191)
464 3dm5_A SRP54, signal recogniti 97.6 4.3E-05 1.5E-09 51.3 3.5 25 12-36 99-123 (443)
465 1mky_A Probable GTP-binding pr 97.6 4.1E-05 1.4E-09 50.6 3.3 23 14-36 181-203 (439)
466 2xtp_A GTPase IMAP family memb 97.6 4.9E-05 1.7E-09 46.5 3.4 22 14-35 23-44 (260)
467 2ius_A DNA translocase FTSK; n 97.6 3.3E-05 1.1E-09 52.7 2.8 30 6-35 160-189 (512)
468 1w5s_A Origin recognition comp 97.6 3.7E-05 1.2E-09 49.3 2.9 26 12-37 49-76 (412)
469 1z06_A RAS-related protein RAB 97.6 5.1E-05 1.8E-09 44.0 3.3 22 14-35 21-42 (189)
470 1zbd_A Rabphilin-3A; G protein 97.6 5.2E-05 1.8E-09 44.3 3.3 22 14-35 9-30 (203)
471 1ksh_A ARF-like protein 2; sma 97.6 4.5E-05 1.5E-09 44.0 3.0 25 11-35 16-40 (186)
472 3b1v_A Ferrous iron uptake tra 97.6 4.8E-05 1.7E-09 47.7 3.3 22 14-35 4-25 (272)
473 2bcg_Y Protein YP2, GTP-bindin 97.6 4.5E-05 1.5E-09 44.8 3.0 23 13-35 8-30 (206)
474 3cph_A RAS-related protein SEC 97.6 4.7E-05 1.6E-09 44.7 3.1 24 12-35 19-42 (213)
475 2qtf_A Protein HFLX, GTP-bindi 97.6 4.7E-05 1.6E-09 49.6 3.3 21 15-35 181-201 (364)
476 2ohf_A Protein OLA1, GTP-bindi 97.6 5.2E-05 1.8E-09 50.3 3.5 27 9-35 18-44 (396)
477 2a5j_A RAS-related protein RAB 97.6 5.5E-05 1.9E-09 44.0 3.3 22 14-35 22-43 (191)
478 2b6h_A ADP-ribosylation factor 97.6 6.8E-05 2.3E-09 43.9 3.7 23 12-34 28-50 (192)
479 2h17_A ADP-ribosylation factor 97.6 5.5E-05 1.9E-09 43.6 3.2 23 13-35 21-43 (181)
480 2atv_A RERG, RAS-like estrogen 97.6 5.6E-05 1.9E-09 44.1 3.3 23 13-35 28-50 (196)
481 2ew1_A RAS-related protein RAB 97.6 5.8E-05 2E-09 44.8 3.4 22 14-35 27-48 (201)
482 2o52_A RAS-related protein RAB 97.6 6E-05 2E-09 44.3 3.4 21 14-34 26-46 (200)
483 1zd9_A ADP-ribosylation factor 97.6 5.9E-05 2E-09 43.8 3.3 23 13-35 22-44 (188)
484 3lxw_A GTPase IMAP family memb 97.6 5.3E-05 1.8E-09 46.6 3.3 22 14-35 22-43 (247)
485 1sky_E F1-ATPase, F1-ATP synth 97.6 6.3E-05 2.1E-09 51.0 3.8 29 8-36 146-174 (473)
486 2cjw_A GTP-binding protein GEM 97.6 6.1E-05 2.1E-09 44.2 3.3 22 14-35 7-28 (192)
487 3reg_A RHO-like small GTPase; 97.6 6.2E-05 2.1E-09 43.8 3.3 22 14-35 24-45 (194)
488 1gwn_A RHO-related GTP-binding 97.6 6.5E-05 2.2E-09 44.7 3.4 22 14-35 29-50 (205)
489 3bgw_A DNAB-like replicative h 97.6 7.5E-05 2.6E-09 49.8 4.0 33 10-42 194-229 (444)
490 3c5c_A RAS-like protein 12; GD 97.5 6.6E-05 2.2E-09 43.7 3.3 22 14-35 22-43 (187)
491 2fv8_A H6, RHO-related GTP-bin 97.5 5.7E-05 1.9E-09 44.6 3.1 22 14-35 26-47 (207)
492 4bas_A ADP-ribosylation factor 97.5 6.1E-05 2.1E-09 43.6 3.1 22 13-34 17-38 (199)
493 3cbq_A GTP-binding protein REM 97.5 4.6E-05 1.6E-09 44.9 2.6 21 14-34 24-44 (195)
494 3t5d_A Septin-7; GTP-binding p 97.5 6E-05 2E-09 46.8 3.2 21 14-34 9-29 (274)
495 1knx_A Probable HPR(Ser) kinas 97.5 7.6E-05 2.6E-09 48.2 3.7 33 12-45 146-178 (312)
496 2j1l_A RHO-related GTP-binding 97.5 7.3E-05 2.5E-09 44.4 3.4 21 14-34 35-55 (214)
497 4dhe_A Probable GTP-binding pr 97.5 5.6E-05 1.9E-09 44.8 2.9 24 13-36 29-52 (223)
498 2f7s_A C25KG, RAS-related prot 97.5 7E-05 2.4E-09 44.2 3.3 22 14-35 26-47 (217)
499 2qu8_A Putative nucleolar GTP- 97.5 6.6E-05 2.2E-09 45.0 3.2 23 13-35 29-51 (228)
500 2il1_A RAB12; G-protein, GDP, 97.5 6.8E-05 2.3E-09 43.8 3.2 21 14-34 27-47 (192)
No 1
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=1.6e-12 Score=77.92 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=34.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+++++.+.+++.++|+|++||||||+++.|++.++.++++.|..
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~ 59 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWY 59 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHH
Confidence 56789999999999999999999999999999999999988865
No 2
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.29 E-value=2.4e-12 Score=83.92 Aligned_cols=50 Identities=42% Similarity=0.585 Sum_probs=45.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhcccc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLE 61 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 61 (68)
++++++|+||+|||||||+..||+.++.++++.|+.++|+++++.+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~ 88 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS 88 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC
Confidence 34589999999999999999999999999999999999999999776543
No 3
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=99.22 E-value=1e-11 Score=80.54 Aligned_cols=49 Identities=37% Similarity=0.525 Sum_probs=44.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhcccc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLE 61 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 61 (68)
+.+++|+||+|||||||+..|++.++..+++.|+.++|+++++.+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~ 51 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKIT 51 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCC
Confidence 4579999999999999999999999999999999999999999876653
No 4
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=99.18 E-value=2.1e-11 Score=78.93 Aligned_cols=49 Identities=31% Similarity=0.320 Sum_probs=44.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhcccc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLE 61 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 61 (68)
..+++|+||+|||||||+..|++.++.++++.|+.++|+++++.+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~ 58 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPN 58 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCC
Confidence 4579999999999999999999999999999999999999999876653
No 5
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.18 E-value=3.3e-11 Score=75.00 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=38.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhh
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVEC 56 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~ 56 (68)
++++|+|++||||||+++.|++.++.++++.|..++++++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~ 44 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATG 44 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTT
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccc
Confidence 3789999999999999999999999999999998777766543
No 6
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.15 E-value=4.4e-11 Score=77.99 Aligned_cols=46 Identities=52% Similarity=0.681 Sum_probs=41.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhcc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVK 59 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~ 59 (68)
.+++|+||+||||||+++.|++.++..+++.|++++|+++++.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Tak 53 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAK 53 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccC
Confidence 4899999999999999999999999999999999999998876443
No 7
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.13 E-value=4.2e-11 Score=69.65 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=31.9
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
..+++++|+|++||||||+++.|+..++..+++.|..
T Consensus 2 ~~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~ 38 (173)
T 1kag_A 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE 38 (173)
T ss_dssp -CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHH
Confidence 3467899999999999999999999999988877643
No 8
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.13 E-value=3.1e-11 Score=73.57 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=24.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||++.|+..+
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999999999999999766
No 9
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=99.13 E-value=5.8e-11 Score=79.02 Aligned_cols=49 Identities=49% Similarity=0.676 Sum_probs=44.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhccccc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLEL 62 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 62 (68)
.+++|+||+|||||||+..|++.++..+++.|+.++|+++++.+..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~ 51 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPL 51 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCG
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCH
Confidence 4789999999999999999999999999999999999999987766543
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.12 E-value=2.8e-11 Score=74.89 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++++..+
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4678999999999999999999999999998543
No 11
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.11 E-value=5.7e-11 Score=70.40 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=35.6
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHH-cCCeEEecCch
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKK-FNGEIISADSM 47 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~-~~~~~~~~d~~ 47 (68)
.++...++.+++|+|++||||||+++.|++. ++.++++.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~ 45 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL 45 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHH
Confidence 4566778899999999999999999999999 79999988864
No 12
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.11 E-value=5.6e-11 Score=70.58 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=25.9
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
|++|.+|++++|+|||||||||+++.|+..+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46788899999999999999999999997753
No 13
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=99.11 E-value=6.5e-11 Score=76.74 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=41.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhhhhhcc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLVECRVK 59 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~ 59 (68)
.+++|+||+||||||+++.|++.++..+++.|+.++++++++.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTak 51 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAK 51 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCC
Confidence 4799999999999999999999999999999999999888775544
No 14
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.11 E-value=2.5e-11 Score=75.21 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=29.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+||||||||||+++|+..
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999999999999854
No 15
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.10 E-value=6.9e-11 Score=72.79 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=27.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCe
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGE 40 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~ 40 (68)
+.++|++.++.+++|+|||||||||+++.|+..++..
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4578999999999999999999999999999877643
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.10 E-value=3.4e-11 Score=73.98 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++++|++++|+||||||||||+++++..+
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999999999998543
No 17
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.08 E-value=1.6e-10 Score=69.10 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=32.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++++++|+|+|||||||+++.|+..++..+++.|..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccccc
Confidence 4688999999999999999999999999888877654
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.08 E-value=5.1e-11 Score=74.78 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++++..+
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999999999998543
No 19
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.08 E-value=1.2e-10 Score=70.18 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=32.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchh
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~ 48 (68)
.+.+++|+|++||||||+++.|++.++.++++.|...
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~ 40 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 40 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCccee
Confidence 3568999999999999999999999999999877553
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.08 E-value=5e-11 Score=74.52 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++++|++++|+||||||||||+++++..+
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999998543
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.07 E-value=4.7e-11 Score=75.61 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++++..+
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4678999999999999999999999999998543
No 22
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.07 E-value=4.3e-11 Score=76.30 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++|+..+
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4578999999999999999999999999998543
No 23
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.07 E-value=3.7e-11 Score=75.26 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=38.4
Q ss_pred ccccccCC---CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 5 FLKVVMSK---VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 5 ~~~~~~~~---~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+++++.+ ++.++|+|++||||||+++.|++.+++++++.|..
T Consensus 37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~ 82 (250)
T 3nwj_A 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTL 82 (250)
T ss_dssp HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHH
Confidence 45677777 99999999999999999999999999999988754
No 24
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.07 E-value=1.3e-10 Score=68.47 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=27.5
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCCe
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNGE 40 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~ 40 (68)
.+.+|++++|+|+|||||||+++.|+...+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g 36 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVP 36 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 46789999999999999999999999776544
No 25
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.06 E-value=5.3e-11 Score=74.92 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++++..+
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3578999999999999999999999999998543
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.06 E-value=8.5e-11 Score=73.93 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.++|++.+|++++|+||||||||||+++|+..
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999964
No 27
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.06 E-value=6.6e-11 Score=74.51 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++|+..+
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3578999999999999999999999999998544
No 28
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.06 E-value=8.2e-11 Score=69.06 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=32.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++..++|+|++||||||+++.|++.++.++++.|..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~ 38 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDI 38 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 4677899999999999999999999999999987643
No 29
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.06 E-value=5.9e-11 Score=73.56 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++++|++++|+||||||||||+++++..+
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999999998543
No 30
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.06 E-value=7.5e-11 Score=69.43 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=30.2
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+++++.+|++++|+||||||||||++.++..+
T Consensus 25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467889999999999999999999999999765
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.06 E-value=7.7e-11 Score=73.41 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|++++|+||||||||||++.|+..
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999999999954
No 32
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.05 E-value=2.5e-10 Score=66.59 Aligned_cols=37 Identities=27% Similarity=0.604 Sum_probs=33.1
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++++++|+|++||||||+++.|+..++..+++.|..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccc
Confidence 4578999999999999999999999889999988764
No 33
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.05 E-value=7.2e-11 Score=69.49 Aligned_cols=30 Identities=27% Similarity=0.565 Sum_probs=26.8
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+++|++++|++++|+||||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 368899999999999999999999999643
No 34
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.05 E-value=8.1e-11 Score=73.80 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++|+..+
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999999999998543
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.05 E-value=6.9e-11 Score=72.81 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++++|++++|+||||||||||+++++..+
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999999998543
No 36
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.05 E-value=7.1e-11 Score=73.58 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++++|++++|+||||||||||+++|+..+
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999999999998554
No 37
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.05 E-value=1.8e-11 Score=78.62 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=31.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++++|++++|+.++|+||||||||||++.|+..+.
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 35789999999999999999999999999986553
No 38
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.04 E-value=8.1e-11 Score=74.58 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++|+..+
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999999999999998543
No 39
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.04 E-value=9.8e-11 Score=73.82 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++|+..+
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999999999998554
No 40
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.04 E-value=9.9e-11 Score=73.52 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++++..+
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999999999999998543
No 41
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.04 E-value=7.8e-11 Score=73.05 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++++|++++|+||||||||||+++|+..+
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999999999998543
No 42
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.04 E-value=6.9e-11 Score=72.53 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++++..+
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999999999998543
No 43
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.03 E-value=1.4e-10 Score=75.98 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||+++|+...
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3678999999999999999999999999999543
No 44
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.03 E-value=1.1e-10 Score=73.15 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=30.1
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+++++++|++++|+||||||||||+++|+..+
T Consensus 38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 568999999999999999999999999998554
No 45
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.02 E-value=2.3e-10 Score=67.20 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=32.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++.++|+|++||||||+++.|++.++.++++.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence 56899999999999999999999999999988865
No 46
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.02 E-value=1e-10 Score=73.07 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++++..+
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999999999999998543
No 47
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.02 E-value=2.7e-10 Score=68.20 Aligned_cols=45 Identities=36% Similarity=0.339 Sum_probs=36.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc-CCeEEecCchh
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF-NGEIISADSMQ 48 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~-~~~~~~~d~~~ 48 (68)
+..-..+.++.+++|+|++||||||+++.|++.+ +..+++.|...
T Consensus 12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~ 57 (207)
T 2qt1_A 12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFF 57 (207)
T ss_dssp --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGB
T ss_pred ccccccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccc
Confidence 3444567788899999999999999999999887 78888888653
No 48
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.02 E-value=2.7e-10 Score=67.10 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=34.1
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.++.+++|.|++||||||+++.|++.++.++++.|..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~ 43 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDL 43 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHH
Confidence 45778999999999999999999999999999988753
No 49
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.02 E-value=2.3e-10 Score=67.25 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=33.6
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.++..++|.|++||||||+++.|++.++.++++.|..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~ 39 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAF 39 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHH
Confidence 45677899999999999999999999999999988754
No 50
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.02 E-value=4.5e-10 Score=64.83 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=31.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchh
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~ 48 (68)
++++|.|++||||||+++.|++.++.++++.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccc
Confidence 47999999999999999999999999999888653
No 51
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.01 E-value=1.1e-10 Score=72.94 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=30.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++++|++++|+||||||||||+++++..+
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999999998543
No 52
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.01 E-value=1.9e-10 Score=75.61 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++++|++++|+||||||||||+++++...
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3678999999999999999999999999999543
No 53
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.00 E-value=3.5e-10 Score=70.17 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=32.8
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++.+++|+|++||||||+++.|++.+++.+++.+..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i 61 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCce
Confidence 4678999999999999999999999999998876643
No 54
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.00 E-value=4.4e-10 Score=67.04 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=31.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
..+++|+|++||||||+++.|++.++..+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcC
Confidence 46899999999999999999999999999988864
No 55
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.00 E-value=3.3e-10 Score=66.42 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=34.9
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
..+.+++.++|+|++||||||+++.|++.++..+++.|..
T Consensus 6 ~~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~ 45 (180)
T 3iij_A 6 PEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL 45 (180)
T ss_dssp CTTCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred cccccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHH
Confidence 3455678899999999999999999999999999988754
No 56
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.00 E-value=2.1e-10 Score=75.73 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++|+...
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4678999999999999999999999999999543
No 57
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.00 E-value=2.9e-10 Score=73.10 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=34.2
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEE
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEII 42 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~ 42 (68)
.+++++++|+.++|+||||||||||++.|+..+.+.++
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~ 155 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL 155 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence 46789999999999999999999999999988766665
No 58
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.99 E-value=3.4e-10 Score=68.08 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=24.7
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.++.+|++++|+||||||||||+++|+..+
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999999999999999765
No 59
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.99 E-value=2.4e-10 Score=74.85 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++++|++++|+||||||||||+++|+...
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4678999999999999999999999999999543
No 60
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.99 E-value=3.2e-10 Score=67.82 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=31.1
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcC--CeEEecCch
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFN--GEIISADSM 47 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~--~~~~~~d~~ 47 (68)
..++.+++|+|+|||||||+++.|+..++ ..+++.|..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 35778999999999999999999998877 777766643
No 61
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.99 E-value=1.4e-10 Score=70.57 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=22.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH-HHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA-KKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~-~~~ 37 (68)
..+|+++.+|++++|+|||||||||+++.|+ ..+
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3578899999999999999999999999999 665
No 62
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.99 E-value=3.3e-10 Score=69.80 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=34.9
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.+..+.+.++|+|+||+||||+|.++.|++.+++++++.++
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGd 62 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGD 62 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHH
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHH
Confidence 34556777899999999999999999999999999997764
No 63
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.98 E-value=2.6e-10 Score=70.86 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=29.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++++ ++++|+||||||||||+++++..+
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999 999999999999999999999544
No 64
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.98 E-value=2.2e-10 Score=74.91 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++|+...
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999999999999999543
No 65
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.98 E-value=2.7e-10 Score=74.64 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=30.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++|+...
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4678999999999999999999999999999543
No 66
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.98 E-value=3.5e-10 Score=66.18 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++++|+|++||||||+++.|++.++.++++.|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~ 38 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFL 38 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHH
Confidence 4699999999999999999999999999988764
No 67
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.98 E-value=2.9e-10 Score=74.70 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++|+...
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4578999999999999999999999999999543
No 68
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.97 E-value=2.3e-10 Score=74.63 Aligned_cols=34 Identities=35% Similarity=0.367 Sum_probs=30.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++|+...
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 4578999999999999999999999999999543
No 69
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.96 E-value=2.9e-10 Score=74.67 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++|+...
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3578999999999999999999999999999543
No 70
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.96 E-value=3.7e-10 Score=74.58 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=30.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++|++.+|+.++|+||||||||||+++|+..
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 467899999999999999999999999999954
No 71
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.95 E-value=3.3e-10 Score=66.87 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=33.7
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.++.+|+|.|++||||||+++.|++.++..+++.|..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~ 46 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGEL 46 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHH
Confidence 44567999999999999999999999999999988754
No 72
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.95 E-value=5.5e-10 Score=64.85 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=31.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++++|.|++||||||+++.|++.++.++++.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~ 41 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMI 41 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence 47899999999999999999999999999988754
No 73
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.95 E-value=1.9e-10 Score=75.02 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.+|++++|+||||||||||+++|+...
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999999999999999543
No 74
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.95 E-value=4.8e-10 Score=65.84 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=31.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+|+|+|++||||||+++.|++.++.++++.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchH
Confidence 4699999999999999999999999999988864
No 75
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.94 E-value=4.3e-10 Score=67.66 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=31.4
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcC-----CeEEecCchh
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFN-----GEIISADSMQ 48 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~-----~~~~~~d~~~ 48 (68)
..++++++|+||||||||||++.|+..+. ...+..|+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 35789999999999999999999997764 4556666543
No 76
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.94 E-value=6.1e-10 Score=65.26 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.+|+|.|++||||||+++.|++.++.++++.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 37 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGEL 37 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 46899999999999999999999999999988754
No 77
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.93 E-value=3.3e-10 Score=77.29 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=30.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++++|+.++|+||||||||||++.++..+
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999999999999654
No 78
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.93 E-value=4.3e-10 Score=70.77 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++. |++++|+||||||||||+++++..+
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999 9999999999999999999998554
No 79
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.93 E-value=1.3e-09 Score=63.56 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEe
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIIS 43 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~ 43 (68)
+++++|+|++||||||+++.|++.++.++++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 4689999999999999999999998877664
No 80
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.92 E-value=4.9e-10 Score=66.98 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=26.7
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+...++.+++|+|+|||||||+++.|+..+
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999999877
No 81
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.91 E-value=1.1e-09 Score=66.44 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=32.1
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++..|+|.|++||||||+++.|++.++..+++.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~ 41 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDL 41 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHH
Confidence 4567899999999999999999999999999988754
No 82
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.91 E-value=1.1e-09 Score=65.23 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=29.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+++|+|++||||||+++.|++ ++.++++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~ 34 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKL 34 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHH
Confidence 4799999999999999999999 89999988864
No 83
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.91 E-value=8.6e-10 Score=67.73 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=30.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++++++|+|+|||||||+++.|++.++...++.++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 357999999999999999999999988877765543
No 84
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.91 E-value=1.1e-09 Score=62.76 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=29.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++++|.|++||||||+++.| +.++.++++.++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~ 34 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDV 34 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHH
Confidence 57999999999999999999 8999999987643
No 85
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.91 E-value=1.2e-09 Score=65.88 Aligned_cols=36 Identities=19% Similarity=0.464 Sum_probs=32.5
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++..|+|.|++||||||+++.|++.++.++++.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~ 38 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDM 38 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHH
Confidence 467899999999999999999999999999988654
No 86
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.90 E-value=1.3e-09 Score=64.93 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=32.7
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++.+|+|.|++||||||+++.|++.++.++++.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~ 54 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGEL 54 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHH
Confidence 3457899999999999999999999999999988754
No 87
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.90 E-value=8.1e-10 Score=66.34 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=22.4
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
|.+++.++|+||||||||||++.|+..+
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578899999999999999999998764
No 88
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.90 E-value=1.4e-09 Score=63.70 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc---CCeEEecCchh
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF---NGEIISADSMQ 48 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d~~~ 48 (68)
.+|+.++|+|++||||||+++.|+..+ +.+++..|...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 357899999999999999999999877 87887666543
No 89
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.89 E-value=1.2e-09 Score=63.35 Aligned_cols=34 Identities=24% Similarity=0.506 Sum_probs=31.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++|+|.|++||||||+++.|++.++.++++.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHH
Confidence 4799999999999999999999999999988754
No 90
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.89 E-value=1e-09 Score=64.20 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcC-----CeEEecCc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFN-----GEIISADS 46 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~-----~~~~~~d~ 46 (68)
+.+++|.|++||||||+++.|++.++ .++++.|+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 57899999999999999999999887 88887664
No 91
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.89 E-value=1.3e-09 Score=64.62 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=25.2
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+|++++|+|+|||||||+++.|+..+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999999999765
No 92
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.89 E-value=2.8e-10 Score=77.61 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=31.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++++++++|+.++|+||||||||||++.++..+.
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 35789999999999999999999999999996553
No 93
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.88 E-value=1.4e-09 Score=65.53 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=30.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++.+++|+|++||||||+++.|++ ++.++++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHH
Confidence 456899999999999999999988 89999987643
No 94
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.88 E-value=1.6e-09 Score=66.53 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=25.1
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
.|++|++++|+||||||||||++.|+..+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 478899999999999999999999997654
No 95
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.88 E-value=1.9e-09 Score=64.12 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=31.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+..+|+|.|++||||||+++.|++.++..+++.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~ 49 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDL 49 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHH
Confidence 346899999999999999999999999999988753
No 96
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.88 E-value=1.2e-09 Score=65.23 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=29.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+++|+|++||||||+++.|+. +|.++++.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHH
Confidence 3799999999999999999987 89999987754
No 97
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.87 E-value=1.6e-09 Score=64.96 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=30.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.|+|+|++||||||+++.|++.++..+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHH
Confidence 589999999999999999999999999988654
No 98
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.87 E-value=1.7e-09 Score=62.50 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=30.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.|+|.|++||||||+++.|++.++.++++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~ 34 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEE 34 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHH
Confidence 3689999999999999999999999999988754
No 99
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.87 E-value=1.7e-09 Score=64.96 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=30.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.|+|+|++||||||+++.|++.++..+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 589999999999999999999999999988754
No 100
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.87 E-value=1.8e-09 Score=65.86 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=30.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++++|+|||||||+|.++.|++.+++++++..+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdl 34 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDI 34 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHH
Confidence 4689999999999999999999999999987643
No 101
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.87 E-value=2e-09 Score=62.92 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=31.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
..+++|.|++||||||+++.|++.++.++++.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 40 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDL 40 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHH
Confidence 35899999999999999999999999999988753
No 102
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.86 E-value=2e-09 Score=65.10 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=32.4
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++..|+|.|++||||||+++.|++.++.++++.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~l 39 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDM 39 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHH
Confidence 457899999999999999999999999999988754
No 103
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.86 E-value=2.6e-09 Score=66.46 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=31.6
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.+..+++|.||+||||||+++.|++.++..+++.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 3456899999999999999999999999999877743
No 104
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.86 E-value=1.9e-09 Score=66.51 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=33.1
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++..|+|.|++||||||+++.|++.++..+++.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~ 63 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDL 63 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHH
Confidence 4667899999999999999999999999999988754
No 105
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.86 E-value=2.2e-09 Score=63.57 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=29.8
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc-CCeEEecC
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF-NGEIISAD 45 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~-~~~~~~~d 45 (68)
.++..|+|.|++||||||+++.|++.+ +.++++.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 467899999999999999999999988 46666544
No 106
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.86 E-value=1.9e-09 Score=63.58 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=27.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCC-eEEecC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNG-EIISAD 45 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~-~~~~~d 45 (68)
+++++|+|+|||||||+++.|+...+. ..++.|
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d 35 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGD 35 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEccc
Confidence 468999999999999999999987765 445544
No 107
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.85 E-value=3e-10 Score=77.80 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=31.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++++++++|+.++|+||||||||||++.+++.+.
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 46789999999999999999999999999996553
No 108
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.85 E-value=2.7e-09 Score=67.08 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=32.0
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.++.+++| ++|+||||||||||+++++..++...+.++.
T Consensus 39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~g 77 (274)
T 2x8a_A 39 LGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFISVKG 77 (274)
T ss_dssp TTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEET
T ss_pred cCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEEc
Confidence 45566666 9999999999999999999988877665554
No 109
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.85 E-value=1.4e-09 Score=69.30 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=30.2
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcC-------CeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFN-------GEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~-------~~~~~~d~~ 47 (68)
.++.+++|+|+||||||||++.|+..+. ..+++.|+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 6788999999999999999999998655 345555654
No 110
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.85 E-value=2e-09 Score=63.65 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
..+|+|+|++||||||+++.|++. +.++++.|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~ 41 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDAL 41 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHH
Confidence 468999999999999999999988 9999988854
No 111
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.84 E-value=2.3e-10 Score=78.04 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=31.1
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++++++++|+.++|+||||||||||++.++..+.
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 35789999999999999999999999999986553
No 112
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.84 E-value=3.5e-10 Score=77.41 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=31.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++++++++|+.++|+||||||||||++.++..+.
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 45789999999999999999999999999986553
No 113
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.84 E-value=1.8e-09 Score=65.23 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++..|+|.|++||||||+++.|++.++..+++.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~ 39 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDL 39 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence 456899999999999999999999999988877654
No 114
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.84 E-value=2.9e-09 Score=62.87 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+|++++|+||||||||||++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999997653
No 115
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.83 E-value=2.3e-09 Score=62.92 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.1
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++.+.+++.++|+||+|+|||||+++++..+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566788999999999999999999998654
No 116
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.83 E-value=2.7e-09 Score=64.35 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=32.1
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
..+++|+|.+||||||+++.|++.+|.++++.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHH
Confidence 46899999999999999999999889999999865
No 117
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.83 E-value=3.5e-09 Score=64.74 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=33.6
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
-.++.+++|+|++||||||+++.|++.++.++++.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 35678999999999999999999999999999988754
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.82 E-value=2.9e-09 Score=68.89 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=33.0
Q ss_pred cccccccCC--CCEEEEEecCCCcHHHHHHHHHHHcCCe
Q psy1747 4 SFLKVVMSK--VPIFVILGSTGTGKSKLGIEIAKKFNGE 40 (68)
Q Consensus 4 ~~~~~~~~~--~~~i~i~G~sGsGKTtl~~~l~~~~~~~ 40 (68)
.++++.+.+ ++.++|+|+||||||||++.|+..+...
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 568888999 9999999999999999999999877644
No 119
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.82 E-value=1.1e-09 Score=65.22 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=27.0
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCC
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNG 39 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~ 39 (68)
.+.++.+|+|.|++||||||+++.|++.++.
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999987653
No 120
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.81 E-value=2.6e-09 Score=64.75 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=24.4
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
.+++|++++|+||||||||||+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 47889999999999999999999988
No 121
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.81 E-value=4.1e-09 Score=65.04 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=31.0
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCe----------EEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGE----------IISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~----------~~~~d~~ 47 (68)
+..+|+|.|++||||||+++.|++.++.+ +++.|++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 34579999999999999999999988877 6888865
No 122
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.81 E-value=3.9e-09 Score=62.56 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=30.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+++|.|++||||||+++.|++.++.++++.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~ 36 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLL 36 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchH
Confidence 899999999999999999999999999988854
No 123
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.79 E-value=4.5e-09 Score=63.32 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=25.4
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++|++++|+|||||||||+++.|+..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999999998764
No 124
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.79 E-value=5.3e-09 Score=63.80 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=32.3
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++..|+|.|++||||||+++.|++.++..+++.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~l 50 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDM 50 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence 457899999999999999999999999999988753
No 125
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.79 E-value=4.4e-09 Score=67.22 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=29.0
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++++.++++++|+|+|||||||+++.|+..+
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467778899999999999999999999999543
No 126
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.79 E-value=3.5e-09 Score=62.68 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++|+|||||||||++++|+..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999664
No 127
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.78 E-value=5.1e-09 Score=63.00 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=30.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.|+|.|++||||||+++.|++.++.++++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 589999999999999999999999999988653
No 128
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.78 E-value=4.6e-10 Score=82.37 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=43.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC---CeEEecCch--------hhhchhhhhhcccccc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN---GEIISADSM--------QGLKFLVECRVKLELL 63 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~---~~~~~~d~~--------~~~~~~~~~~~~~~~~ 63 (68)
++++|++++|+.++|+|+||||||||++.|.+.+. +. +..|+. .+.+.+.+.+|++..+
T Consensus 1096 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF 1165 (1321)
T 4f4c_A 1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE-IFIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165 (1321)
T ss_dssp EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE-EEETTEETTTBCHHHHHTTEEEECSSCCCC
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE-EEECCEEhhhCCHHHHHhheEEECCCCEee
Confidence 35789999999999999999999999999997664 22 223322 3445667777776554
No 129
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.77 E-value=3.3e-09 Score=61.50 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=28.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHH-HcCCeEEecCc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK-KFNGEIISADS 46 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~-~~~~~~~~~d~ 46 (68)
.+++|.|++||||||+++.|++ .++..+++.|.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~ 36 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD 36 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH
Confidence 4789999999999999999998 67788887664
No 130
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.77 E-value=6e-09 Score=63.94 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=31.0
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.++.+++| ++|+|||||||||++++++...+...+..+.
T Consensus 44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~ 82 (254)
T 1ixz_A 44 MGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITASG 82 (254)
T ss_dssp TTCCCCSE--EEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCCCCe--EEEECCCCCCHHHHHHHHHHHhCCCEEEeeH
Confidence 34555666 9999999999999999999887766665543
No 131
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.76 E-value=4e-09 Score=63.22 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.4
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
-+++|++++|+||||||||||++.++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999863
No 132
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.76 E-value=8.6e-09 Score=60.35 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=29.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc---CCeEEecCc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF---NGEIISADS 46 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d~ 46 (68)
++++|.|++||||||+++.|++.+ +.++++.|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 368999999999999999999887 888887653
No 133
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.76 E-value=6.8e-09 Score=62.14 Aligned_cols=30 Identities=30% Similarity=0.606 Sum_probs=26.6
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
.|.++++++|+|+|||||||+++.|++.++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467889999999999999999999998774
No 134
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.75 E-value=1.9e-09 Score=73.72 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++++|+.++|+||||||||||++.++..+
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3578999999999999999999999999999654
No 135
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.75 E-value=5.6e-09 Score=60.92 Aligned_cols=31 Identities=26% Similarity=0.547 Sum_probs=24.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEE
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEII 42 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~ 42 (68)
++.+|+|.|++||||||+++.|++.++.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5678999999999999999999999998887
No 136
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.75 E-value=1.9e-09 Score=70.07 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=30.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++++.+.+|+.++|+|||||||||+++.|+..+.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45678889999999999999999999999996553
No 137
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.74 E-value=8.4e-09 Score=62.72 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=30.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.++|.|++||||||+++.|++.++.++++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHH
Confidence 689999999999999999999999999988654
No 138
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.74 E-value=6.7e-09 Score=66.62 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=25.7
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++.+++|+|+||||||||++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 6789999999999999999999999754
No 139
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.74 E-value=7.8e-09 Score=70.35 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=26.9
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++ .+.+|++++|+|+||||||||+++|+..
T Consensus 41 vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 41 LP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CC-CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred cC-cCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44 6789999999999999999999999954
No 140
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=98.73 E-value=4.6e-09 Score=64.52 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=37.3
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhhhchhh
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQGLKFLV 54 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~~~~~~ 54 (68)
.++.++|+||+|+||||++..|+++.. ++++.|..++++..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~ 74 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDE 74 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECST
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCC
Confidence 467899999999999999999998866 999999999988766
No 141
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.73 E-value=8.4e-09 Score=70.16 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=30.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|++.++.+++|+|+|||||||+++.|+..+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4678888999999999999999999999999643
No 142
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.72 E-value=9.5e-09 Score=67.25 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=29.1
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++++.++++++|+|+|||||||+++.|+..+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 467778899999999999999999999999643
No 143
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.72 E-value=8.7e-09 Score=65.17 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=30.6
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc--CCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF--NGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~--~~~~~~~d~~ 47 (68)
.++.+++|.|+|||||||+++.|++.+ +..+++.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 346789999999999999999999887 5677776643
No 144
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.72 E-value=5.6e-09 Score=70.09 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=28.4
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++++.+|++++|+||||||||||+++|+..
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 5788899999999999999999999999854
No 145
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.72 E-value=1.1e-08 Score=63.76 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=31.0
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.++.++++ ++|+|||||||||++++++..+....+.++.
T Consensus 68 ~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~ 106 (278)
T 1iy2_A 68 MGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITASG 106 (278)
T ss_dssp TTCCCCCE--EEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCCCCe--EEEECCCcChHHHHHHHHHHHcCCCEEEecH
Confidence 34556666 9999999999999999999887766665543
No 146
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.71 E-value=1.2e-08 Score=67.13 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=34.0
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEe
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIIS 43 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~ 43 (68)
.++.+++++.++|+||+||||||+++.++..++..++.
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 45678999999999999999999999999888887765
No 147
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.71 E-value=9.7e-09 Score=64.39 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=28.3
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+++.+++|++++|+|+||+|||||++.++..
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34577899999999999999999999999854
No 148
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.71 E-value=3.2e-09 Score=64.73 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.4
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+|++++|+||||||||||+++++..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999999999854
No 149
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.71 E-value=2.1e-09 Score=78.91 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=31.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++.++++++|+.++|+|++|||||||++.|.+.+.
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 35789999999999999999999999999997664
No 150
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.70 E-value=8.2e-09 Score=70.23 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=27.3
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++++.+|++++|+|+||||||||+++|+..
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CccccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456789999999999999999999999954
No 151
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.70 E-value=1.1e-08 Score=60.82 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCe
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGE 40 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~ 40 (68)
+.++|+||||||||||++.++..++..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 368999999999999999999876533
No 152
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.70 E-value=1e-08 Score=64.24 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=25.5
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.+|.+++|+|||||||||+++.++..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 7889999999999999999999998643
No 153
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.70 E-value=1.9e-08 Score=59.23 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=26.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEe
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIIS 43 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~ 43 (68)
+.|+|.|++||||||+++.|++.++..++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 368999999999999999999999887664
No 154
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.70 E-value=1.5e-08 Score=66.95 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=34.7
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchh
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~ 48 (68)
...+..+|+|+|++||||||+++.|++.+++.+++.|...
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~ 293 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG 293 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH
Confidence 3445689999999999999999999999999999888753
No 155
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.70 E-value=1.2e-08 Score=63.43 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=29.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHH---cCCeEE--ecCc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKK---FNGEII--SADS 46 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~---~~~~~~--~~d~ 46 (68)
.++.+|+|+|++||||||+++.|++. .+.+++ +.|.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 45678999999999999999999987 677777 5553
No 156
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.70 E-value=1.7e-08 Score=61.41 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+....++++++|+||||||||||++.|++.+.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44455789999999999999999999997754
No 157
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.69 E-value=1.1e-08 Score=63.33 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=29.9
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCC--eEEecCc
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNG--EIISADS 46 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~--~~~~~d~ 46 (68)
..++..++|+|+|||||||+++.|++.++. .+++.|.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~ 67 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS 67 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH
Confidence 455678999999999999999999998863 4455554
No 158
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.69 E-value=1.8e-08 Score=63.64 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=34.0
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.+..+..++|.||+|+|||+++++++..++.+++.++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~ 83 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 83 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH
Confidence 3456778899999999999999999999998888776643
No 159
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.68 E-value=7e-09 Score=60.58 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=26.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcC-----CeEEecC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFN-----GEIISAD 45 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~-----~~~~~~d 45 (68)
+.|+|.|++||||||+++.|++.++ ..+++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 3689999999999999999998876 5666544
No 160
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.68 E-value=1.5e-08 Score=60.82 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
+.+++|+|++||||||+++.|++.++.++++.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChH
Confidence 45799999999999999999999999999988754
No 161
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.68 E-value=8.7e-09 Score=74.40 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=29.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
++++|++.+|++++|+|+||||||||+++|+.
T Consensus 452 ~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999999999999983
No 162
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.68 E-value=1.1e-08 Score=70.60 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=27.3
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++++.+|++++|+||||||||||++.|+..
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455789999999999999999999999954
No 163
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.68 E-value=5e-09 Score=72.39 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=27.8
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+++++++++|++++|+||||||||||++.+.
T Consensus 339 ~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 339 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 4678999999999999999999999997653
No 164
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.68 E-value=2.8e-08 Score=59.49 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=27.4
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHc---CCeEE
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKF---NGEII 42 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~ 42 (68)
..++.+++|+|++||||||+++.|+..+ +..++
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 4677899999999999999999999754 55544
No 165
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.67 E-value=1.3e-08 Score=66.21 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=28.9
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++.+|++++|+|+||||||||+++|+....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7889999999999999999999999997765
No 166
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.67 E-value=5.1e-09 Score=62.35 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=25.2
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+.++.+|+|.|++||||||+++.|++.++
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999997653
No 167
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.67 E-value=1.5e-08 Score=63.76 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=30.1
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
..+|+|+|++||||||+++.|+ .++.++++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~ 108 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHL 108 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHH
Confidence 4579999999999999999999 579999988764
No 168
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.67 E-value=2.6e-08 Score=58.28 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=27.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
...++++.++ +.+|+|+|||||||++++|...++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 3456667777 899999999999999999986543
No 169
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.67 E-value=9.2e-09 Score=70.11 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=27.1
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++.+|++++|+||||||||||+++|+..
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556789999999999999999999999854
No 170
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.67 E-value=3e-09 Score=68.58 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=29.6
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++++.+.+|+.++|+|+|||||||+++.|+..+.
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4567788899999999999999999999997653
No 171
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.66 E-value=3e-08 Score=58.30 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=26.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc---CCeEEecC
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF---NGEIISAD 45 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d 45 (68)
.|+|.|++||||||+++.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 68999999999999999999888 88887543
No 172
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.66 E-value=6.5e-09 Score=65.95 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=28.4
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcC-----CeEEecCchh
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFN-----GEIISADSMQ 48 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~-----~~~~~~d~~~ 48 (68)
+..+|+|.|++||||||+++.|++.++ ..+++.|++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999999998766 6778888654
No 173
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.65 E-value=3.2e-09 Score=77.81 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=31.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++++++++|+.++|+|+||||||||++.|++.+.
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35789999999999999999999999999986653
No 174
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.65 E-value=1.7e-08 Score=68.28 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=29.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++++++.+ ++++|+||||||||||+++|+..+
T Consensus 21 ~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 21 FARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 356888999 999999999999999999999654
No 175
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.65 E-value=2e-08 Score=67.06 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=28.8
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++.+|+.++|+|+||||||||+++|+....
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 7899999999999999999999999997764
No 176
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.64 E-value=1.7e-08 Score=69.61 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=25.9
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+.+|++++|+||||||||||+++|+..
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 6789999999999999999999999854
No 177
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.63 E-value=1e-08 Score=68.52 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=28.4
Q ss_pred cccccccCCCCE--EEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPI--FVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~--i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+++++.+|.+ ++|+|+||||||||++.|+..
T Consensus 31 ~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 356788999999 999999999999999999843
No 178
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.63 E-value=1.2e-08 Score=70.51 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=25.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLG 30 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~ 30 (68)
++++|++++|++++|+||||||||||+
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHh
Confidence 468899999999999999999999996
No 179
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.63 E-value=2.4e-08 Score=59.10 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=25.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNG 39 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~ 39 (68)
++.+|+|.|++||||||+++.|++.++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999988765
No 180
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.63 E-value=5.1e-08 Score=59.87 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.1
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
...++|+||+|+||||+++.++..++.+++.++.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~ 78 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 78 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH
Confidence 4569999999999999999999988877776654
No 181
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.63 E-value=2.7e-08 Score=59.41 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=25.3
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+++|++++|+|+||||||||++.++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999999843
No 182
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.62 E-value=1.2e-08 Score=74.86 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=31.4
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++++|++++|+.++|+|+||||||||++.|++.+.
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 46789999999999999999999999999996553
No 183
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.61 E-value=2.3e-08 Score=64.59 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=28.7
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++++.++.+++|+|+||||||||++.++..
T Consensus 47 ~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 47 AVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred hCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45788899999999999999999999999854
No 184
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.61 E-value=1.6e-08 Score=60.84 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=27.1
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+.+.++.+++|.|++||||||+++.|++.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467788999999999999999999997664
No 185
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.60 E-value=6.1e-08 Score=57.70 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=29.4
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEec
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISA 44 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~ 44 (68)
.+++|.+++|+|+||+|||||+..++...+..++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i 51 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYV 51 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEE
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 478899999999999999999999987445554433
No 186
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.59 E-value=2.3e-08 Score=67.47 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=26.4
Q ss_pred cccc-ccCCCCEEEEEecCCCcHHHHHHHH
Q psy1747 5 FLKV-VMSKVPIFVILGSTGTGKSKLGIEI 33 (68)
Q Consensus 5 ~~~~-~~~~~~~i~i~G~sGsGKTtl~~~l 33 (68)
.+++ .+++|++++|+|+||||||||++++
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 4577 8899999999999999999999994
No 187
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.7e-08 Score=68.04 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=25.5
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+.+|++++|+||||||||||+++|+..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 4678999999999999999999999954
No 188
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.59 E-value=4.8e-08 Score=61.68 Aligned_cols=37 Identities=24% Similarity=0.147 Sum_probs=30.9
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
.....+.|.||+|+|||++++++|+.++.+++.++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~ 70 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAG 70 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHH
Confidence 4456788999999999999999999999887766543
No 189
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.58 E-value=6.1e-08 Score=60.03 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=31.5
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
+.....+.|.||+|+|||++++.++..++.+++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 3566789999999999999999999999888776543
No 190
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.58 E-value=3.3e-08 Score=59.43 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
|+.++|+|+|||||||+++.++..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4679999999999999999999654
No 191
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.58 E-value=1.1e-08 Score=73.83 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=30.5
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++|++.+|++++|+||||||||||++.|+..+
T Consensus 690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999999999998543
No 192
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.58 E-value=3.6e-08 Score=57.11 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.8
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++.++|+|++|+|||||+++++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999765
No 193
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=5.9e-08 Score=64.95 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=33.9
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchh
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~ 48 (68)
-++..+-+.+.||||||||++++++|..++.+++.++...
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 3555678999999999999999999999999988766543
No 194
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.56 E-value=3.8e-08 Score=57.90 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=26.2
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
....++.+++|.|++||||||+++.|+..++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3345778999999999999999999997653
No 195
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.56 E-value=3.2e-08 Score=67.44 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.8
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
...+|++++|+||||||||||+++|+..
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3467899999999999999999999854
No 196
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.56 E-value=3.8e-08 Score=60.02 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=28.0
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeE
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEI 41 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~ 41 (68)
.....+|..++|.|++||||||+++.|+.. +..+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 345578899999999999999999999876 4433
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=6.9e-08 Score=64.68 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=33.3
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
-+...+-+.+.||||||||++++++|..++.+++.++..
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 355667899999999999999999999999998866544
No 198
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.55 E-value=9.1e-08 Score=58.36 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
.....+.|+||+|+|||++++.++..++.+++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~ 71 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMA 71 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 45567999999999999999999998887776544
No 199
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=7e-08 Score=64.47 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=33.6
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchh
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~ 48 (68)
-+...+-+.+.||||||||++++++|..++.+++.++...
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 3455667999999999999999999999999988776543
No 200
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.55 E-value=4.4e-08 Score=67.70 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=27.2
Q ss_pred ccccccCCC-----CEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKV-----PIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~-----~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++++.+| ++++|+||||||||||+++|+..
T Consensus 365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS
T ss_pred ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC
Confidence 456677666 78999999999999999999954
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=6.3e-08 Score=64.43 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=33.9
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhh
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQG 49 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~ 49 (68)
-+...+-+.+.||||||||++++++|..++.+++.++...+
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 34555679999999999999999999999999887765433
No 202
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.55 E-value=1.6e-08 Score=65.74 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=28.8
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
.+++++.+| +++|+|+||||||||+++|...++
T Consensus 53 ~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 53 QLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred eEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888999 999999999999999999975554
No 203
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.55 E-value=6.4e-08 Score=61.92 Aligned_cols=26 Identities=19% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++++|+|||||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999543
No 204
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.55 E-value=5.8e-08 Score=59.60 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=28.3
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcC--CeEE
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFN--GEII 42 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~--~~~~ 42 (68)
+.++..++|.|++||||||+++.|++.++ ..++
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 44789999999999999999999998875 4554
No 205
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.54 E-value=5.7e-08 Score=60.42 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=31.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
...++|.|++||||||+++.|++.++.++++.++.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdl 42 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDM 42 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHH
Confidence 46799999999999999999999999999988653
No 206
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.54 E-value=7.8e-08 Score=62.14 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=27.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcC-------CeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFN-------GEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~-------~~~~~~d~~ 47 (68)
.+++|+|+|||||||++++|+..+. ..++..|+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3899999999999999999997764 334666654
No 207
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.53 E-value=4.8e-08 Score=66.91 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=27.1
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
.+.+|++++|+|+|||||||++++|++.+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 467899999999999999999999998764
No 208
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.53 E-value=5.7e-08 Score=60.75 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=28.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc-CCeEEecCc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF-NGEIISADS 46 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~-~~~~~~~d~ 46 (68)
.+++|.|++||||||+++.|++.+ +..+++.|.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~ 36 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD 36 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccH
Confidence 478999999999999999999874 788887773
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.53 E-value=2.1e-08 Score=66.71 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.++|+|+||||||||+++|+.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999999985
No 210
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.52 E-value=2.1e-08 Score=68.05 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=28.6
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++.+.++..++|+|||||||||++++++..+
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 355667889999999999999999999998655
No 211
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.52 E-value=1.3e-07 Score=57.04 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=29.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEe
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIIS 43 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~ 43 (68)
..+|.|.|+.||||||+++.||+++++++++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 4689999999999999999999999999996
No 212
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.51 E-value=1.5e-07 Score=58.66 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=29.4
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
....++|.||+|+||||+++.++..++.+++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~ 86 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNIS 86 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence 3578999999999999999999999887776544
No 213
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.51 E-value=6.8e-08 Score=58.27 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=25.3
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
-+++|.+++|+|+||||||||++.++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3678999999999999999999999973
No 214
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.51 E-value=6.3e-08 Score=63.28 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.5
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+.++..++|+|||||||||+++.++..+
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 36788999999999999999999998653
No 215
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.51 E-value=4.8e-08 Score=70.13 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=28.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+++++++.+|++++|+|||||||||++++++
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 4677888899999999999999999999987
No 216
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.51 E-value=1.4e-07 Score=63.92 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=31.3
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
++.++++ ++|+||||+|||||+++++...+.+++.++..
T Consensus 60 g~~ip~G--vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~ 98 (499)
T 2dhr_A 60 GARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITASGS 98 (499)
T ss_dssp SCCCCSE--EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCCce--EEEECCCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 4445555 99999999999999999999888777766543
No 217
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.49 E-value=1.2e-07 Score=66.97 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=35.6
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
+.++.+..++.++|+|||||||||++++++..++.+++.++.
T Consensus 230 ~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~ 271 (806)
T 1ypw_A 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp GTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEH
T ss_pred HHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 345667888999999999999999999999988887776554
No 218
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.49 E-value=1.2e-07 Score=61.53 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=27.7
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+.+++|.++.|+|+||||||||+++++...
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999999765
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.49 E-value=8.9e-08 Score=61.89 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=24.1
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.++.+++|+|||||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999543
No 220
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.1e-07 Score=64.21 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=34.4
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchh
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~ 48 (68)
+-+...+-+.+.||+|||||++++++|..++.+++.++...
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 34556678999999999999999999999999988766543
No 221
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.48 E-value=1.5e-07 Score=60.22 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeE
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEI 41 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~ 41 (68)
..++|+||||+||||++++++..++.++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 6799999999999999999998876554
No 222
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.7e-07 Score=62.96 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=34.2
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhh
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQG 49 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~ 49 (68)
-+...+-+.+.||+|||||++++++|..++.+++.++...+
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 34556779999999999999999999999999887765443
No 223
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.45 E-value=1.1e-07 Score=68.41 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=27.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+++++.+.+|++++|+|||||||||++++++
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567788889999999999999999999984
No 224
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.45 E-value=1.9e-07 Score=64.98 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=32.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc---CCeEEecCchhh
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF---NGEIISADSMQG 49 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d~~~~ 49 (68)
++.+|+|+|.+||||||+++.|++.+ +.+++.+|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 56789999999999999999999988 888887775444
No 225
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.44 E-value=1.4e-07 Score=59.36 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.++|+||||||||||++.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999644
No 226
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.44 E-value=2e-07 Score=59.96 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=30.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
....++|.||+|+|||++++.+++.++.+++..+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~ 85 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 85 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechH
Confidence 346799999999999999999999999888866543
No 227
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.44 E-value=9.2e-08 Score=62.40 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.3
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
...++.+++|+|||||||||++++++..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34566799999999999999999998543
No 228
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.44 E-value=2.6e-07 Score=62.81 Aligned_cols=34 Identities=32% Similarity=0.582 Sum_probs=28.9
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEE
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEII 42 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~ 42 (68)
+++ ++..++|+||||+||||++++++..++.+..
T Consensus 104 ~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 104 KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 344 6789999999999999999999988876654
No 229
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.44 E-value=1.4e-07 Score=58.84 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.5
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+++|++++|+|+||||||||+..++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999999984
No 230
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.43 E-value=1.5e-07 Score=59.82 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=29.6
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcC-------CeEE-ecCchh
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFN-------GEII-SADSMQ 48 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~-------~~~~-~~d~~~ 48 (68)
.++.+++|+|++||||||+++.|+..+. ...+ ..|++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 4567899999999999999999987654 2344 777653
No 231
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.43 E-value=1.5e-07 Score=66.80 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+..+++ .+|++++|+|||||||||++++++.
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHH
Confidence 345666 7889999999999999999999984
No 232
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.42 E-value=4.6e-07 Score=52.01 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.0
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
....++|+|++|+|||++++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999765
No 233
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.42 E-value=8.2e-08 Score=56.78 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=25.6
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+.+.++..++|+|++|||||||++.++.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 7788899999999999999999998873
No 234
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.41 E-value=3.4e-07 Score=58.19 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=30.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
....+.|.||+|+|||+++++++...+.+++.++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 34679999999999999999999999888876654
No 235
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.41 E-value=1.8e-07 Score=56.32 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=21.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+.|+|+||||+|||||++.|.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5689999999999999999987653
No 236
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.39 E-value=1.8e-07 Score=60.87 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=24.3
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
.++++..+ ..+|+|||||||||++.+++
T Consensus 17 ~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 17 VDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45667777 78899999999999999987
No 237
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.39 E-value=3.9e-07 Score=52.40 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
....++|+|++|+|||++++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999775
No 238
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.39 E-value=1.2e-07 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
++|+|.|++||||||+++.|++.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 239
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.38 E-value=1.3e-07 Score=56.14 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+.++|+|+||||||||++.|++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999664
No 240
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.38 E-value=4.4e-07 Score=56.32 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=28.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
...+.|+||+|+|||++++.+++.++.+++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~ 82 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 467899999999999999999999887776554
No 241
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.38 E-value=2.1e-07 Score=59.20 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.5
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+...+++++|+|+||+|||||+++|+ ..
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 34568899999999999999999998 54
No 242
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.37 E-value=3.2e-07 Score=56.48 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
..+|+|.|++||||||+++.|++.+++++++.|
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~ 46 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDD 46 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHH
Confidence 458999999999999999999999999998744
No 243
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.37 E-value=3.3e-07 Score=56.71 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=28.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
....+.|+||+|+|||++++.+++..+.+++..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 4467999999999999999999998888776553
No 244
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.37 E-value=2.8e-07 Score=61.30 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
.++.+++|+|||||||||++++++..+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5678999999999999999999987653
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.36 E-value=4.1e-07 Score=58.67 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=29.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
...+.|+||+|+|||++++.+++.++.+++..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~ 105 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA 105 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecc
Confidence 4579999999999999999999999888776543
No 246
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.36 E-value=6.3e-07 Score=57.82 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.3
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
....++|+||+|+|||++++.++..++.+++.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh
Confidence 45689999999999999999999999888775543
No 247
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.36 E-value=3.7e-07 Score=57.72 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHc---CCeEEecC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKF---NGEIISAD 45 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d 45 (68)
+..++|+||+|+||||+++.++..+ +.+++..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4679999999999999999999776 66666554
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.35 E-value=3.7e-07 Score=58.49 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=25.7
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++...++++++|+|++||||||++..|+..+
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 3445677899999999999999999998543
No 249
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.35 E-value=3.7e-07 Score=56.00 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=29.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCch
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~ 47 (68)
-.++|+|..||||||+++.+++ +|.++++.|..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~i 42 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLI 42 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHH
Confidence 4699999999999999999987 89999999863
No 250
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.35 E-value=3.3e-07 Score=55.26 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.8
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
-+++|.+++|+|+||+||||++..++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999887764
No 251
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.35 E-value=7.7e-08 Score=63.19 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=28.7
Q ss_pred ccccCCCCE--EEEEecCCCcHHHHHHHHHHHcCCeE
Q psy1747 7 KVVMSKVPI--FVILGSTGTGKSKLGIEIAKKFNGEI 41 (68)
Q Consensus 7 ~~~~~~~~~--i~i~G~sGsGKTtl~~~l~~~~~~~~ 41 (68)
++.+.+++. ++|+|++||||||+++.|++.++.++
T Consensus 16 ~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 16 DNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 344566655 99999999999999999998877665
No 252
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.35 E-value=6.1e-07 Score=57.30 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=28.0
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc-CCeEEecC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF-NGEIISAD 45 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~-~~~~~~~d 45 (68)
..+.+.|.||+|+|||++++.++..+ +.+++..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~ 78 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 78 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE
Confidence 44789999999999999999999887 66665443
No 253
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.34 E-value=4.1e-07 Score=58.54 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=28.3
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
...+|...++++++|+|++|+||||++..|+..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356677788899999999999999999999854
No 254
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.34 E-value=5e-07 Score=58.38 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=29.8
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
....++|+||+|+|||++++.++..++.+++.++.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 34568999999999999999999999888776653
No 255
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.33 E-value=3.3e-07 Score=59.92 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=26.1
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++++.++ +++|+|||||||||+++++.-
T Consensus 19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 456777788 999999999999999999974
No 256
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.33 E-value=1.6e-07 Score=59.55 Aligned_cols=29 Identities=31% Similarity=0.225 Sum_probs=24.8
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
|++..+++++|+|+||||||||+++|+..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccc
Confidence 34557889999999999999999999854
No 257
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.33 E-value=3.1e-07 Score=62.54 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCC-------eEEecCc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNG-------EIISADS 46 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~-------~~~~~d~ 46 (68)
+++.+|+|+|.+||||||+++.|++.++. .+++.|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 45678999999999999999999999875 4566554
No 258
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.33 E-value=7.9e-07 Score=57.76 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=30.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
...++|+||+|+|||++++.++..++.+++.++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 5789999999999999999999999888876554
No 259
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.33 E-value=7e-07 Score=60.25 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=28.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
+.++|+||+|+|||+++++++...+.+++..+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH
Confidence 458999999999999999999998888776543
No 260
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.33 E-value=1e-07 Score=58.61 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=27.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
...+.|.||+|+|||++++.++..++.+++.++
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 345889999999999999999988877766544
No 261
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.31 E-value=6.3e-07 Score=53.47 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+..++|.||+|+||||+++.++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998654
No 262
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.30 E-value=6.9e-07 Score=63.56 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=35.2
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchh
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~ 48 (68)
..+.+...+-+.|.||+|+|||+|++++|..++.+++.++...
T Consensus 231 ~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~ 273 (806)
T 3cf2_A 231 KAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp TSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHH
T ss_pred hhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHH
Confidence 3344556678999999999999999999999999888776543
No 263
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.30 E-value=1.6e-07 Score=60.31 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=25.3
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+++.+|++++|+|+||+|||||++.|+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 5667899999999999999999999973
No 264
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.30 E-value=8.5e-07 Score=58.90 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=30.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcC--CeEEecCchh
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFN--GEIISADSMQ 48 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~--~~~~~~d~~~ 48 (68)
.+..+.|.||+|+|||++++.+++.++ .+++.++...
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~ 100 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHH
Confidence 346799999999999999999999988 7777665443
No 265
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.30 E-value=7.8e-07 Score=59.72 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=30.1
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
...+++.||+|+||||+++++|+.++.+++..+.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 3569999999999999999999999998887664
No 266
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.29 E-value=4e-07 Score=64.34 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
|++++|+|||||||||++++++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 89999999999999999999984
No 267
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.29 E-value=2e-07 Score=67.52 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=27.6
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEI 33 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l 33 (68)
+++++++++|++++|+|+||||||||++.+
T Consensus 659 k~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 659 RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 467899999999999999999999999985
No 268
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=1.1e-06 Score=59.12 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=30.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
...++|.||+|+||||+++.+++.++.+++..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 4689999999999999999999999988876654
No 269
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.28 E-value=1.4e-06 Score=54.28 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.8
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+..++|+||+|+|||++++.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999766
No 270
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.28 E-value=9.2e-07 Score=55.95 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc------CCeEEecC
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF------NGEIISAD 45 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~------~~~~~~~d 45 (68)
..+..++|+|++|+||||+++.+++.+ +..++..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 346789999999999999999999766 66666554
No 271
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.28 E-value=9e-07 Score=55.97 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=27.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
..+.|.||+|+|||++++.+++.++.+++..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 46899999999999999999998887766544
No 272
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.27 E-value=8.4e-07 Score=56.46 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.1
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++++++|+|++|+||||++..|+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999843
No 273
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.26 E-value=7.7e-07 Score=54.89 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=28.9
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEec
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISA 44 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~ 44 (68)
+++...++|.||+|+||||++.++++.+...++..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f 89 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF 89 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE
Confidence 45556799999999999999999998887666543
No 274
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.26 E-value=5.7e-07 Score=65.19 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=25.7
Q ss_pred cccccccCC-------CCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSK-------VPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~-------~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+.+++.+.+ |++++|+||||+||||++++++
T Consensus 773 ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 773 NDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp EEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHH
T ss_pred eeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHH
Confidence 345566655 7999999999999999999985
No 275
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.25 E-value=6.9e-07 Score=58.52 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.2
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+|++++|+|+||+|||||++.|+..
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcc
Confidence 36789999999999999999999853
No 276
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.25 E-value=6e-07 Score=61.64 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=29.2
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcC----CeEEecCchh
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFN----GEIISADSMQ 48 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~----~~~~~~d~~~ 48 (68)
+++.+|+|.|.+||||||+++.|++.++ .+++.+|...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 3457899999999999999999998875 4444444333
No 277
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.25 E-value=1.9e-07 Score=67.51 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=27.9
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
.++++++++|++++|+|+||||||||++.+.
T Consensus 641 k~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 641 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999999999999853
No 278
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.24 E-value=3e-07 Score=65.04 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=33.3
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
..+.+.++..++|+||||+||||++++++..++.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 544 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCC
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 34556677889999999999999999999988877665543
No 279
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.24 E-value=4.2e-07 Score=58.04 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+-++++|+|++||||||+++.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4468999999999999999999864
No 280
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.22 E-value=9.1e-07 Score=59.69 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=26.5
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
...+.+|.+++|+|+||||||||+++++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999999843
No 281
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.22 E-value=1.9e-06 Score=57.24 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=28.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc-CCeEEecC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF-NGEIISAD 45 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~-~~~~~~~d 45 (68)
..+.++|.||+|+|||++++.++..+ +.+++.++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 44689999999999999999999988 66666544
No 282
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.22 E-value=1.2e-06 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+.++|+|++||||||+++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999999854
No 283
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.22 E-value=5.4e-07 Score=57.44 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=25.2
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++++.++ +.+|+|+|||||||++.++.-.
T Consensus 18 ~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 18 SLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp EEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred eEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 45666677 9999999999999999999843
No 284
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.22 E-value=1.2e-06 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..+.|+|++|+|||++++.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998654
No 285
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.21 E-value=8.9e-07 Score=50.51 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=22.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+..+.|.|++|+|||++++.++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999998654
No 286
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.21 E-value=8.8e-07 Score=58.61 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=23.1
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+++|.++.|+|+||||||||+..++
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 6789999999999999999999776
No 287
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.21 E-value=2.8e-07 Score=65.80 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.7
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHH-HH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIE-IA 34 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~-l~ 34 (68)
+++++++++|++++|+|+||||||||++. |+
T Consensus 514 ~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 514 DNLDVRFPLGVMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp EEEEEEEESSSEEEEECCTTSSHHHHCCCCCH
T ss_pred ccceEEEcCCCEEEEEcCCCcCHHHHHHHHHH
Confidence 45789999999999999999999999996 54
No 288
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=4.1e-07 Score=57.95 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=23.4
Q ss_pred cCCCCE--EEEEecCCCcHHHHHHHHHHHc
Q psy1747 10 MSKVPI--FVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 10 ~~~~~~--i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+..++. ++|+||+|+||||+++++++.+
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 444554 9999999999999999999764
No 289
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.20 E-value=8.3e-07 Score=54.82 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.0
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+|.+|..|+|.|++||||||+++.|++.+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999765
No 290
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.20 E-value=1.1e-06 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++|+|++|||||||++.++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999854
No 291
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.20 E-value=1.4e-06 Score=58.76 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=31.5
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
......+.|.||+|+|||++++.++..++.+++.++.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~ 271 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3455679999999999999999999999888876653
No 292
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.18 E-value=1.7e-06 Score=56.94 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=26.0
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++..+.+++|+|||||||||++.+++..++
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4455678999999999999999999985544
No 293
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.18 E-value=1.9e-06 Score=52.84 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=27.1
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHcCC
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNG 39 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~ 39 (68)
|.+|..|+|.|++||||||+++.|++.++.
T Consensus 2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999998875
No 294
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.18 E-value=5.5e-07 Score=59.89 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=29.2
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..+++++..+..++|+|+||||||||+++++..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 456788899999999999999999999999743
No 295
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.18 E-value=2.4e-06 Score=54.38 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=25.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc----CCeEEecC
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF----NGEIISAD 45 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~----~~~~~~~d 45 (68)
.++|.||+|+||||+++.++..+ +..++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 89999999999999999999776 45555443
No 296
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.18 E-value=1.3e-06 Score=55.38 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.8
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..+..++|+||+|+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999766
No 297
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.18 E-value=1.2e-06 Score=54.54 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=22.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++|+||+|+|||++++.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999765
No 298
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.18 E-value=4.9e-07 Score=61.92 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=28.1
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+++.+..+..++|+||||+||||+++.++..+.
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 345567788999999999999999999997664
No 299
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.17 E-value=2.7e-06 Score=54.22 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=27.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHc-----------CCeEEecC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKF-----------NGEIISAD 45 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~-----------~~~~~~~d 45 (68)
...+.|.||+|+|||++++.+++.+ +..++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4689999999999999999999766 77766554
No 300
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.16 E-value=2.5e-06 Score=52.05 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+..|+|.|+.||||||+++.|++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999884
No 301
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.16 E-value=1.4e-06 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++|+|++|+|||||++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999854
No 302
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.16 E-value=1.8e-06 Score=56.49 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=28.2
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHH---cCCeEEecC
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKK---FNGEIISAD 45 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~---~~~~~~~~d 45 (68)
+++|.++.|.||+|||||||+.+++.. .+..++.++
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 567899999999999999999999854 345544333
No 303
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.15 E-value=8.7e-07 Score=63.73 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=25.0
Q ss_pred cccccccCCCCEEEEEecCCCcHHHHH
Q psy1747 4 SFLKVVMSKVPIFVILGSTGTGKSKLG 30 (68)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~sGsGKTtl~ 30 (68)
++++++++.|++++|+|+||||||||+
T Consensus 601 k~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 601 KNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccceEEcCCcEEEEEccCCCChhhhH
Confidence 467899999999999999999999997
No 304
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.15 E-value=2.5e-06 Score=56.99 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=27.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
..++|+||+|+||||+++.+++.++.+++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 46999999999999999999998887766443
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.15 E-value=2e-06 Score=51.17 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
...++|+|++||||||++..|+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998653
No 306
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.15 E-value=2e-06 Score=54.74 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNG 39 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~ 39 (68)
+..++|.||+|+|||++++.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999988763
No 307
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.15 E-value=1.5e-06 Score=55.95 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=26.7
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++...++.+++|+|++|+||||+++.|+..
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3566778899999999999999999999854
No 308
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.14 E-value=1.5e-06 Score=54.93 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=26.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEe
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIIS 43 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~ 43 (68)
+..+.|.||+|+|||++++.++..++.++..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 5679999999999999999999988776543
No 309
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.14 E-value=1.9e-06 Score=57.20 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHc-----CCeEEecC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKF-----NGEIISAD 45 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~-----~~~~~~~d 45 (68)
...++|+||+|+|||||+++++..+ +..++.++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4679999999999999999999765 55555444
No 310
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.13 E-value=7.5e-07 Score=50.78 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=26.3
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
....+.|.|++|+|||++++.++.... +++..+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~ 58 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPA 58 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCS
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEec
Confidence 446799999999999999999986655 555544
No 311
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.13 E-value=2.2e-06 Score=54.44 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=24.6
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.+++ ++++++|+|++|+||||++..++..
T Consensus 93 i~~~--~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 93 PVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp CCCC--SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred eecC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4454 7789999999999999999999854
No 312
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.12 E-value=7.8e-07 Score=54.99 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=26.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc-CCeEE
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF-NGEII 42 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~-~~~~~ 42 (68)
.++..|+|.|+.||||||+++.|++.+ +..++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 456789999999999999999999887 44444
No 313
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.12 E-value=2.8e-06 Score=60.46 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=34.0
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCchhh
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQG 49 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~~~~ 49 (68)
.+...+-+.+.||+|||||.+++++|...+.+++.++...+
T Consensus 507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred CCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 34455668999999999999999999999999987765443
No 314
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.12 E-value=1.7e-06 Score=54.14 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=27.1
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEec
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIISA 44 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~ 44 (68)
...++|.||+|+|||++++.++..++.+++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~ 69 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 35789999999999999999998887776543
No 315
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.12 E-value=2.5e-06 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
..++|.|++|+||||+++.+++.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3799999999999999999987653
No 316
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.11 E-value=3.4e-06 Score=53.84 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=25.1
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
-+++|.++.|.|++|+|||+++..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3678899999999999999999999865
No 317
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.11 E-value=2.2e-06 Score=49.47 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+.+|+|||||||||++.++.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999874
No 318
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.09 E-value=2.3e-06 Score=49.60 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=21.5
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++..++|+|++|+|||||++.++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999853
No 319
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.09 E-value=3.7e-06 Score=54.57 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=23.6
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+++|.++.|.|++|+|||||+..++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999999998874
No 320
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.07 E-value=4.5e-06 Score=53.79 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=25.3
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
-+++|.++.|.|++|+|||+|+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999999864
No 321
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.07 E-value=3.8e-06 Score=52.12 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.++..|+|.|++||||||+++.|++.+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998665
No 322
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.07 E-value=3.5e-06 Score=55.72 Aligned_cols=27 Identities=26% Similarity=0.132 Sum_probs=24.6
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+.++..++|+|+||+|||||+++|+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 457788999999999999999999986
No 323
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=2.4e-06 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++|+||+|+||||+++.+++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999984
No 324
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.06 E-value=3e-06 Score=51.65 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+|..|+|.|++||||||+++.|++.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998765
No 325
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.05 E-value=3.5e-06 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=21.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++|.||+|+|||++++.+++.+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999998754
No 326
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.05 E-value=8e-08 Score=59.43 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=23.3
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+++.+ .+++|+||||||||||+++|+..+
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhccc
Confidence 34444 577899999999999999998654
No 327
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.05 E-value=1.6e-06 Score=57.93 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=28.9
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+..+.+.+|+.++|+|++|+|||||++.+++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 56778899999999999999999999999864
No 328
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.04 E-value=4.8e-06 Score=55.60 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.0
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
....++|+||+|+|||++++.++..+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999875
No 329
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.03 E-value=3.3e-06 Score=54.61 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+..++|+|++|||||||++.++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999853
No 330
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.02 E-value=3.2e-06 Score=57.36 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=23.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
...+|+++|.+||||||+++.|++.++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999998774
No 331
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.02 E-value=4.1e-06 Score=48.00 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||+++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999984
No 332
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.02 E-value=5.1e-06 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+..+.|+||+|+|||+|+++++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999854
No 333
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.01 E-value=6e-06 Score=50.74 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=26.4
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcC---CeEEecC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFN---GEIISAD 45 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~---~~~~~~d 45 (68)
....+.|.|++|+|||++++.++.... .+++.++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 346789999999999999999997653 4555443
No 334
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.01 E-value=2.5e-06 Score=58.74 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHHHH
Q psy1747 16 FVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 16 i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++|+|+||||||||+++|+..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 999999999999999999853
No 335
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.00 E-value=6.2e-06 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+|..|+|.|++||||||+++.|++.+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998655
No 336
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.99 E-value=4.1e-06 Score=53.18 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.++|+|+||+|||||++.|+.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 469999999999999999873
No 337
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.98 E-value=1.3e-06 Score=58.28 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
+...|+++|.+||||||+++.|++.++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999998764
No 338
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.98 E-value=5.1e-06 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.8
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+++|.++.|.|++|+|||+|+..++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 5788999999999999999998876
No 339
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.98 E-value=5.6e-06 Score=51.02 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=24.5
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
.++..|+|.|++||||||+++.|++.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999997654
No 340
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.98 E-value=6.6e-06 Score=51.77 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=27.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
..+.+.||+|+|||++++.+++.++.+++..+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 46778888999999999999999887777554
No 341
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.97 E-value=4.8e-06 Score=50.05 Aligned_cols=30 Identities=13% Similarity=0.323 Sum_probs=24.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 16 FVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 16 i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
+.|+|++|||||+++..++.. +.++++.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 689999999999999999977 666554443
No 342
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.97 E-value=1.1e-05 Score=48.75 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=27.8
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
..|.-++|.|+||+||||++..+.++ |..++.-|.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~ 48 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDV 48 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCE
Confidence 34678999999999999999999875 666654443
No 343
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=6.3e-06 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=21.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..++|.||+|+||||+++.+++.+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999764
No 344
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.96 E-value=6.1e-06 Score=47.69 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=20.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999985
No 345
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.95 E-value=4.8e-06 Score=48.45 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999974
No 346
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.95 E-value=9.4e-06 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++++++|++|+||||++..++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998666644
No 347
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.94 E-value=3.7e-06 Score=55.94 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++|+|+||+|||||++.++..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3699999999999999999843
No 348
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.94 E-value=6.6e-06 Score=49.51 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=20.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+.+|+|+|||||||++.+|.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999987433
No 349
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.94 E-value=4.7e-06 Score=52.82 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.6
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+...++|+|++|+|||||++.+..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 3445799999999999999999983
No 350
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.91 E-value=7.2e-06 Score=52.59 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=18.9
Q ss_pred CEEEEEecCCCcHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~ 34 (68)
.+.+|+|||||||||++.++.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 477999999999999999875
No 351
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.91 E-value=1.1e-05 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
....++|+||+|+|||++++.+++.+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999876
No 352
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.91 E-value=4.7e-06 Score=59.55 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.3
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGI 31 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~ 31 (68)
++++++++++.++|+|.||||||||+-
T Consensus 28 ni~v~iP~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 28 DISVKVPRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp SEEEEEESSSEEEEESSTTSSHHHHHT
T ss_pred CeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 467788999999999999999999874
No 353
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.90 E-value=9.3e-06 Score=52.41 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=24.2
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.++..+.|.||+|+|||++++.+++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999776
No 354
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.90 E-value=1.1e-05 Score=51.43 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=24.5
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+.+|..++|.|+||+|||||+..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 688999999999999999999998843
No 355
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.90 E-value=1.1e-05 Score=53.50 Aligned_cols=27 Identities=15% Similarity=0.422 Sum_probs=24.7
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
-+++|.+++|.|+||+|||||+..++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999999999884
No 356
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.89 E-value=4.5e-06 Score=57.00 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
.+..++|+|++||||||+++.|++.++
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999998764
No 357
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.87 E-value=1.5e-05 Score=51.95 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=27.8
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHH---cCCeEEecC
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKK---FNGEIISAD 45 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~---~~~~~~~~d 45 (68)
++++.++.|.|++|+|||||+..++.. .+..++.+|
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 568899999999999999999988843 244444333
No 358
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.87 E-value=5.1e-06 Score=59.82 Aligned_cols=26 Identities=38% Similarity=0.578 Sum_probs=24.0
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLG 30 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~ 30 (68)
+++++++++++++|+|+||||||+|+
T Consensus 16 ni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 16 NITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp SBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cceeccCCCcEEEEECCCCCcHHHHH
Confidence 56788999999999999999999986
No 359
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.87 E-value=7.4e-06 Score=52.15 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=25.2
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+++.. +.+++++|++|+||||++..++..+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445544 7899999999999999999998543
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.87 E-value=1e-05 Score=46.51 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999984
No 361
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.87 E-value=2.2e-05 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
....++|+|++|+|||||++.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346799999999999999999974
No 362
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.87 E-value=1.2e-05 Score=53.64 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=24.7
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+++ ++++++|+|++|+||||++..|+..+
T Consensus 93 i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 93 PVLK--DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCC--SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444 67899999999999999999998543
No 363
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.87 E-value=1.4e-05 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.9
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+...++|+|++|+|||||++.+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999973
No 364
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.86 E-value=1.5e-05 Score=46.27 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+...++|+|++|+|||||++.+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999853
No 365
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.86 E-value=1.5e-05 Score=55.53 Aligned_cols=31 Identities=29% Similarity=0.612 Sum_probs=27.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
.+.|+||+|+|||++++.+++.++.+++..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~ 520 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD 520 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEe
Confidence 6899999999999999999999887776554
No 366
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.86 E-value=6.6e-06 Score=59.71 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=24.2
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGI 31 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~ 31 (68)
+++++++++++++|+|.||||||+|+-
T Consensus 38 ni~v~iP~~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 38 SVDLDLPRDALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp SEEEEEESSSEEEEEESTTSSHHHHHT
T ss_pred ceeeeccCCCEEEEECCCCCcHHHHHH
Confidence 467889999999999999999999864
No 367
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.86 E-value=9.1e-06 Score=46.25 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
....++|+|.+|+|||||++.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999984
No 368
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.86 E-value=1.4e-05 Score=56.55 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=27.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHc----------CCeEEecC
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKF----------NGEIISAD 45 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~----------~~~~~~~d 45 (68)
...++|+||+|+|||++++.++..+ +..++.++
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 4568999999999999999999876 66666554
No 369
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.85 E-value=1.4e-05 Score=45.29 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.6
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+...++|+|++|+|||||++.+..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999974
No 370
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.85 E-value=7e-06 Score=59.50 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=24.1
Q ss_pred ccccccCCCCEEEEEecCCCcHHHHHH
Q psy1747 5 FLKVVMSKVPIFVILGSTGTGKSKLGI 31 (68)
Q Consensus 5 ~~~~~~~~~~~i~i~G~sGsGKTtl~~ 31 (68)
+++++++++++++|+|.||||||+|+-
T Consensus 36 ni~v~iP~~~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 36 NIDVEIPRGKLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp SEEEEEETTSEEEEEESTTSSHHHHHT
T ss_pred ceeeeccCCcEEEEECCCCCCHHHHHH
Confidence 467889999999999999999999863
No 371
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.85 E-value=9.4e-06 Score=51.45 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=24.3
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
+++|.++.|.|++|+|||+++..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 577899999999999999999999854
No 372
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.83 E-value=1.5e-05 Score=44.95 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999984
No 373
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.82 E-value=1.6e-05 Score=44.42 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++++|++|+|||||++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999743
No 374
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.82 E-value=2.3e-05 Score=49.01 Aligned_cols=29 Identities=34% Similarity=0.353 Sum_probs=24.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEE
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEII 42 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~ 42 (68)
..++|.|+.|+|||+|++.+++......+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~ 59 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYI 59 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 58999999999999999999977654433
No 375
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.82 E-value=1.2e-05 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.+++++|++|+||||++..|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999843
No 376
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.82 E-value=1.6e-05 Score=44.61 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.++|+|++|+|||||++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999853
No 377
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.81 E-value=9.5e-06 Score=52.85 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=23.8
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++..+.|.||+|+|||+|+.+++...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~ 147 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEAL 147 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhC
Confidence 4566778999999999999999998653
No 378
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.80 E-value=3.1e-05 Score=44.61 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
...++|+|++|+|||||++.+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999743
No 379
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.80 E-value=1.7e-05 Score=44.42 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
-.++|+|++|+|||||++.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999874
No 380
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.80 E-value=6.2e-06 Score=55.54 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.8
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
.++++.+| +.+|+|+||||||+|+.+|.-.++
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44556666 899999999999999999975544
No 381
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.80 E-value=6.6e-06 Score=51.90 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
..+.|.||+|+|||++++.++..++
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 4599999999999999999998775
No 382
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.80 E-value=1.6e-05 Score=49.52 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=28.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcCCeEEecCc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d~ 46 (68)
.+++|+|..||||||+++.+...+|.+++...+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~ 34 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAG 34 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecCh
Confidence 479999999999999999998888888766543
No 383
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.79 E-value=1.6e-05 Score=48.17 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 4799999999999999999984
No 384
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.79 E-value=1.9e-05 Score=44.32 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999984
No 385
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.79 E-value=2e-05 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
..++|.||+|+||||+++.+++.+.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999997764
No 386
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.78 E-value=1.9e-05 Score=44.84 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=19.4
Q ss_pred CEEEEEecCCCcHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~ 34 (68)
..++|+|++|+|||||++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCccHHHHHHHHh
Confidence 368999999999999999997
No 387
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.78 E-value=1.8e-05 Score=49.09 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=20.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|||||||++.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999984
No 388
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.78 E-value=1.4e-05 Score=47.10 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=21.6
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
++..+. ..++|+|++|+|||||++.+.
T Consensus 20 ~~~~~~-~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 20 GLYKKT-GKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp TCTTCC-EEEEEEEETTSSHHHHHHHHS
T ss_pred hccCCC-cEEEEECCCCCCHHHHHHHHh
Confidence 344444 368999999999999999987
No 389
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.77 E-value=2e-05 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999984
No 390
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.77 E-value=2.7e-05 Score=46.08 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
...++|+|++|+|||||++.+...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999854
No 391
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.77 E-value=2.2e-05 Score=44.29 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3589999999999999999974
No 392
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.77 E-value=2.1e-05 Score=44.84 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999874
No 393
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.76 E-value=2.2e-05 Score=44.43 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~ 34 (68)
.++|+|++|+|||||++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999996
No 394
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=2.5e-05 Score=48.53 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=21.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
..+.|.||+|+||||+++.+++.+
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 369999999999999999999764
No 395
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.76 E-value=2.2e-05 Score=44.18 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.++|+|++|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999974
No 396
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.76 E-value=3.4e-05 Score=49.82 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=26.8
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
.|+-++|.|+||+||||++..+.++ +..++.-|
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD 175 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD 175 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence 4778999999999999999999875 66655443
No 397
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.76 E-value=4.4e-05 Score=53.16 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+..++|+|++|+|||++++.++..+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999765
No 398
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.76 E-value=2.7e-05 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+..++|+|++||||||+++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 399
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.76 E-value=2.1e-05 Score=44.34 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.1
Q ss_pred CEEEEEecCCCcHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~ 34 (68)
-.++|+|.+|+|||||++.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999986
No 400
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.76 E-value=2.2e-05 Score=44.34 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999984
No 401
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.76 E-value=2.2e-05 Score=44.70 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999974
No 402
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.76 E-value=2.3e-05 Score=44.10 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999984
No 403
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.76 E-value=2.7e-05 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+.-.++|+|.+|+|||||++.+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 446799999999999999999974
No 404
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.75 E-value=2.6e-05 Score=46.34 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+...++|+|.+|+||||+++.++..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998653
No 405
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.75 E-value=2.3e-05 Score=44.19 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
-.++|+|++|+|||||++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999843
No 406
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.75 E-value=2.1e-05 Score=54.65 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=25.3
Q ss_pred ccccCCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 7 ~~~~~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
++++.+++.++|+|++|+|||||++.+....
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 4567788999999999999999999998543
No 407
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.74 E-value=3.2e-05 Score=48.33 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHcCCeEEe
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKFNGEIIS 43 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~ 43 (68)
+..++|.|+.|+|||||++.+++..+..+++
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~ 61 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILID 61 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEE
Confidence 4789999999999999999999877633343
No 408
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.74 E-value=2.5e-05 Score=44.44 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++|+|.+|+|||||++.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999853
No 409
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.74 E-value=1.6e-05 Score=47.52 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
....++|+|.+|+|||||++.+..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHhc
Confidence 335799999999999999999984
No 410
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.74 E-value=2.7e-05 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|++|+|||||++.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999985
No 411
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.74 E-value=1.4e-05 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.6
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+.+++.+++.|++||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 3457899999999999999776654
No 412
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.73 E-value=2.6e-05 Score=44.86 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.++|+|.+|+|||||++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999984
No 413
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.73 E-value=1.7e-05 Score=53.74 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFN 38 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~ 38 (68)
.+..+.|.||+|+|||++++.++..++
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 456899999999999999999998764
No 414
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.73 E-value=2.8e-05 Score=44.17 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999973
No 415
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.73 E-value=2.7e-05 Score=43.81 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999984
No 416
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.72 E-value=1.8e-05 Score=45.43 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHH
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
.+...++|+|++|+|||||++.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 345679999999999999999886
No 417
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.72 E-value=2.7e-05 Score=44.74 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999984
No 418
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.72 E-value=1.7e-05 Score=45.86 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+...++|+|++|+|||||++.+..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999974
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.72 E-value=3.2e-05 Score=46.08 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+...++|+|.+|+|||||+..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998653
No 420
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.71 E-value=2.8e-05 Score=44.62 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
-.++|+|++|+|||||++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999984
No 421
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.71 E-value=2.6e-05 Score=44.40 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.4
Q ss_pred CEEEEEecCCCcHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~ 34 (68)
..++|+|++|+|||||++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999986
No 422
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.71 E-value=3.2e-05 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=23.9
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+++|.+++|.|+||+|||+|+..++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999998884
No 423
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.70 E-value=3e-05 Score=44.86 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++|+|.+|+|||||++.++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999843
No 424
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.70 E-value=3e-05 Score=44.67 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
.-.++|+|++|+|||||++.+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999854
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.70 E-value=3e-05 Score=44.31 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4699999999999999999984
No 426
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.70 E-value=4.4e-05 Score=49.94 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.9
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++++.++.|.|++|+|||||+..++..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 568899999999999999999988743
No 427
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.70 E-value=3.1e-05 Score=44.13 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
-.++|+|++|+|||||++.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999973
No 428
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.70 E-value=3.5e-05 Score=53.82 Aligned_cols=31 Identities=35% Similarity=0.667 Sum_probs=25.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc---CCeEEecC
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF---NGEIISAD 45 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d 45 (68)
.+.|+||+|+|||++++.++..+ +.+++.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 69999999999999999999775 44555443
No 429
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.70 E-value=2.8e-05 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+.+|+|+||+|||+++.+|.-
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999874
No 430
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.69 E-value=3.1e-05 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|++|+|||||++.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999974
No 431
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.69 E-value=3.3e-05 Score=43.46 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.++|+|.+|+|||||++.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999974
No 432
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.69 E-value=2.8e-05 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+.|.||+|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999999764
No 433
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.68 E-value=2.9e-05 Score=44.63 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+...++|+|++|+|||||++.+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999974
No 434
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.68 E-value=5.9e-05 Score=49.20 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=27.0
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHc-----CCeEEecCc
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKF-----NGEIISADS 46 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~-----~~~~~~~d~ 46 (68)
+++| ++.|.|++|+|||||+.+++... +..++..|.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 5678 89999999999999988776322 556655554
No 435
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.67 E-value=3.4e-05 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4689999999999999999984
No 436
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.67 E-value=3.6e-05 Score=43.94 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999984
No 437
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.67 E-value=5.7e-05 Score=47.84 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.8
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+...++|.||+|+|||+++.+++..+
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34579999999999999999999764
No 438
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.66 E-value=3.9e-05 Score=43.97 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999983
No 439
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.66 E-value=3.8e-05 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999985
No 440
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.66 E-value=3.7e-05 Score=47.37 Aligned_cols=27 Identities=22% Similarity=0.054 Sum_probs=22.4
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.+|.++++.|++|+||||++..++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999988887544
No 441
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.66 E-value=3.9e-05 Score=43.76 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|.+|+|||||++.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999999974
No 442
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.65 E-value=3.8e-05 Score=44.79 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
-.++|+|.+|+|||||++.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999988874
No 443
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.65 E-value=3.9e-05 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999984
No 444
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.65 E-value=4.7e-05 Score=49.47 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=27.6
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHHH---cCCeEE
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAKK---FNGEII 42 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~~---~~~~~~ 42 (68)
-+.+|.+++|.|+||+|||||+..++.. .+.+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl 78 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA 78 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3678999999999999999999998854 345543
No 445
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.65 E-value=3.9e-05 Score=44.70 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999974
No 446
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.65 E-value=3.9e-05 Score=49.51 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.3
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
+..+++|+|++|+||||++..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998553
No 447
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=3.7e-05 Score=47.73 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHc
Q psy1747 15 IFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
.++|.||+|+|||++++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999764
No 448
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.64 E-value=4.2e-05 Score=43.77 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999974
No 449
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.64 E-value=4.4e-05 Score=43.98 Aligned_cols=23 Identities=26% Similarity=0.053 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++|+|.+|+|||||++.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999888754
No 450
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.64 E-value=4.4e-05 Score=49.13 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.++|+|.+|||||||++.+..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 799999999999999999985
No 451
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.63 E-value=4.3e-05 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|++|+|||||++.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 34699999999999999999974
No 452
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.63 E-value=4.1e-05 Score=46.29 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=24.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHc--CCeEE
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKKF--NGEII 42 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~~--~~~~~ 42 (68)
++.|+|-|+-||||||+++.|++.+ +.+++
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~ 33 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 33 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 4578999999999999999999776 34444
No 453
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.63 E-value=3.7e-05 Score=45.05 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+...++|+|.+|+|||||++.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 345799999999999999999974
No 454
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.63 E-value=3.5e-05 Score=54.60 Aligned_cols=32 Identities=34% Similarity=0.610 Sum_probs=26.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHc---CCeEEecC
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKKF---NGEIISAD 45 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~~~d 45 (68)
..+.|+||+|+|||++++.++..+ +.+++.++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 378999999999999999999876 45555444
No 455
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.63 E-value=4.7e-05 Score=44.16 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|.+|+|||||++.+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 34799999999999999999974
No 456
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.62 E-value=4.7e-05 Score=44.37 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999999974
No 457
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.62 E-value=4.8e-05 Score=44.01 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+...++|+|.+|+|||||++.+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445799999999999999999983
No 458
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.62 E-value=4.8e-05 Score=44.64 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+...++|+|.+|+|||||++.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 345699999999999999999984
No 459
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.62 E-value=4.8e-05 Score=47.20 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+.++|+|.+|||||||++.+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999984
No 460
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.62 E-value=4.7e-05 Score=44.12 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999984
No 461
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.61 E-value=5.1e-05 Score=48.07 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.5
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~ 37 (68)
....+.|.|++|+|||++++.++...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 35679999999999999999998753
No 462
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.61 E-value=5.1e-05 Score=44.78 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|.+|+|||||++.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999984
No 463
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=5.1e-05 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++|+|.+|+|||||++.+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 46999999999999999999854
No 464
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.61 E-value=4.3e-05 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
++.+++++|++|+||||++..|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 3578999999999999999988853
No 465
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.61 E-value=4.1e-05 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..++|+|+||+|||||++.+...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999843
No 466
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.60 E-value=4.9e-05 Score=46.50 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..|+|+|.+|+|||||++.+..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999974
No 467
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.60 E-value=3.3e-05 Score=52.70 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=25.8
Q ss_pred cccccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 6 LKVVMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 6 ~~~~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
+.+++.++..++|.|++|||||++++.+..
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 456677888999999999999999998864
No 468
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.60 E-value=3.7e-05 Score=49.27 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.6
Q ss_pred CCCEEEE--EecCCCcHHHHHHHHHHHc
Q psy1747 12 KVPIFVI--LGSTGTGKSKLGIEIAKKF 37 (68)
Q Consensus 12 ~~~~i~i--~G~sGsGKTtl~~~l~~~~ 37 (68)
.+..++| .|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3456777 9999999999999998654
No 469
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.60 E-value=5.1e-05 Score=43.97 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999974
No 470
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.60 E-value=5.2e-05 Score=44.34 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|++|+|||||++.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999974
No 471
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.59 E-value=4.5e-05 Score=43.96 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.1
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 11 SKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 11 ~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+...++|+|++|+|||||++.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999973
No 472
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.59 E-value=4.8e-05 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999984
No 473
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.59 E-value=4.5e-05 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|++|+|||||++.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999974
No 474
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.59 E-value=4.7e-05 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
....++|+|++|+|||||++.+..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999984
No 475
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.59 E-value=4.7e-05 Score=49.64 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q psy1747 15 IFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 15 ~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.++|+|++|+|||||++.++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 499999999999999999984
No 476
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.59 E-value=5.2e-05 Score=50.29 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=23.5
Q ss_pred ccCCCCEEEEEecCCCcHHHHHHHHHH
Q psy1747 9 VMSKVPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 9 ~~~~~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
.+..+..++|+|.||+|||||++++..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg 44 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTN 44 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 345677899999999999999999984
No 477
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.58 E-value=5.5e-05 Score=43.99 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3689999999999999999984
No 478
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.58 E-value=6.8e-05 Score=43.89 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.4
Q ss_pred CCCEEEEEecCCCcHHHHHHHHH
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
+...++|+|++|+|||||++.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999986
No 479
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.58 E-value=5.5e-05 Score=43.64 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|.+|+|||||++.+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999984
No 480
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.58 E-value=5.6e-05 Score=44.10 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|.+|+|||||++.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999984
No 481
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.58 E-value=5.8e-05 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999874
No 482
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.58 E-value=6e-05 Score=44.34 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.4
Q ss_pred CEEEEEecCCCcHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~ 34 (68)
..++|+|.+|+|||||++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 468999999999999999997
No 483
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.57 E-value=5.9e-05 Score=43.83 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=20.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|.+|+|||||++.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 34699999999999999999984
No 484
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.57 E-value=5.3e-05 Score=46.57 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..|+|+|.+|+|||||++.+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999973
No 485
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.56 E-value=6.3e-05 Score=50.97 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.8
Q ss_pred cccCCCCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 8 VVMSKVPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 8 ~~~~~~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
..+-+|+.++|+|++|+|||||++.++..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 34567899999999999999999988743
No 486
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.56 E-value=6.1e-05 Score=44.24 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999984
No 487
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.56 E-value=6.2e-05 Score=43.77 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
-.++|+|.+|+|||||++.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999999984
No 488
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.56 E-value=6.5e-05 Score=44.66 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999985
No 489
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.55 E-value=7.5e-05 Score=49.79 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=27.0
Q ss_pred cCCCCEEEEEecCCCcHHHHHHHHHHHc---CCeEE
Q psy1747 10 MSKVPIFVILGSTGTGKSKLGIEIAKKF---NGEII 42 (68)
Q Consensus 10 ~~~~~~i~i~G~sGsGKTtl~~~l~~~~---~~~~~ 42 (68)
+.+|..++|.|+||+|||||+..++... +.+++
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl 229 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVN 229 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEE
Confidence 6789999999999999999999887432 44554
No 490
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.55 E-value=6.6e-05 Score=43.73 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.8
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
-.++|+|.+|+|||||++.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 4699999999999999999874
No 491
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.55 E-value=5.7e-05 Score=44.58 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999999984
No 492
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.54 E-value=6.1e-05 Score=43.64 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~ 34 (68)
...++|+|.+|+|||||++.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999999987
No 493
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.54 E-value=4.6e-05 Score=44.86 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.2
Q ss_pred CEEEEEecCCCcHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~ 34 (68)
..++|+|.+|+|||||++.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 494
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.54 E-value=6e-05 Score=46.82 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.9
Q ss_pred CEEEEEecCCCcHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~ 34 (68)
..++|+|.+|+|||||++.|.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999875
No 495
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=97.53 E-value=7.6e-05 Score=48.20 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=25.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHcCCeEEecC
Q psy1747 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45 (68)
Q Consensus 12 ~~~~i~i~G~sGsGKTtl~~~l~~~~~~~~~~~d 45 (68)
.|.-++|.|+||+||||++..+.++ |..++.-|
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~-G~~lv~DD 178 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGDD 178 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCEEEeCC
Confidence 4677999999999999999988753 66655433
No 496
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.53 E-value=7.3e-05 Score=44.44 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.5
Q ss_pred CEEEEEecCCCcHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~ 34 (68)
..++|+|.+|+|||||++.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 469999999999999999997
No 497
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.53 E-value=5.6e-05 Score=44.77 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAKK 36 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~~ 36 (68)
...++|+|.+|+|||||++.+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 467999999999999999999743
No 498
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.53 E-value=7e-05 Score=44.25 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
..++|+|.+|+|||||++.+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999999983
No 499
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.52 E-value=6.6e-05 Score=45.04 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHH
Q psy1747 13 VPIFVILGSTGTGKSKLGIEIAK 35 (68)
Q Consensus 13 ~~~i~i~G~sGsGKTtl~~~l~~ 35 (68)
...++|+|.+|+|||||++.+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999973
No 500
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.52 E-value=6.8e-05 Score=43.75 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.2
Q ss_pred CEEEEEecCCCcHHHHHHHHH
Q psy1747 14 PIFVILGSTGTGKSKLGIEIA 34 (68)
Q Consensus 14 ~~i~i~G~sGsGKTtl~~~l~ 34 (68)
..++|+|.+|+|||||++.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999987
Done!