RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1747
(68 letters)
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 34.6 bits (78), Expect = 3e-04
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
SK + +LG G+GK I + F +SA +
Sbjct: 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDL 40
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 34.3 bits (77), Expect = 4e-04
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
+ P+ I G +G GK L +A+ ++ + ++
Sbjct: 1 AIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 34.3 bits (77), Expect = 4e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
ILG +GKS L ++A FN +
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSAWEYGRE 42
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 34.2 bits (77), Expect = 4e-04
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
+V + +LG G GK ++ K ++ +SA +
Sbjct: 2 AFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDL 42
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 31.8 bits (71), Expect = 0.003
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
+ K I ++G G+GK +I +K+ +S +
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDL 42
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.4 bits (67), Expect = 0.008
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNGEII 42
I+V++G +G+GKS + E+A + + +
Sbjct: 8 IYVLMGVSGSGKSAVASEVAHQLHAAFL 35
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 30.3 bits (67), Expect = 0.010
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
+ +P ++ G+ G GK+ LG E+A K + I+ +
Sbjct: 1 LMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL 38
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 30.3 bits (67), Expect = 0.010
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
M++ PIF++ G+ G G + +G E+A+ E + D
Sbjct: 1 MTE-PIFMV-GARGCGMTTVGRELARALGYEFVDTDIFM 37
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 29.9 bits (66), Expect = 0.012
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
+ +LG G GK I +K+ +SA +
Sbjct: 2 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGEL 35
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 29.5 bits (65), Expect = 0.016
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
+ +I G+ +GK I K+ ISA +
Sbjct: 1 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDL 37
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 29.5 bits (65), Expect = 0.020
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
V++G G GK + ++F+ ++ M
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLATGDM 36
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 29.2 bits (64), Expect = 0.022
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 14 PIFVILGSTGTGKSKLGIEIAKKFN 38
P V++G G+GKS +G +AK
Sbjct: 2 PKAVLVGLPGSGKSTIGRRLAKALG 26
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 29.2 bits (64), Expect = 0.023
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
M + I I G +GKS + IAK F + +M
Sbjct: 1 MKTIQI-AIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 29.1 bits (64), Expect = 0.024
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
V +G G+GKS L +AK + + +D +
Sbjct: 4 VFIGFMGSGKSTLARALAKDLDLVFLDSDFL 34
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 28.8 bits (63), Expect = 0.029
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
V+LG G GK ++AK F ++ M
Sbjct: 7 VLLGPPGAGKGTQAPKLAKNFCVCHLATGDM 37
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 29.0 bits (64), Expect = 0.031
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 11 SKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
+++ I+G+ G+GK + I K F + +S+ +
Sbjct: 4 ARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDL 40
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 28.8 bits (63), Expect = 0.031
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISAD 45
+I G+ GTGK+ + IA + +G
Sbjct: 9 LITGTPGTGKTSMAEMIAAELDGFQHLEV 37
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 28.7 bits (63), Expect = 0.037
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
++LG G GK +++A+K IS +
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQISTGEL 34
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 28.0 bits (62), Expect = 0.060
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGE-----IISADS 46
K PI + GS+G G S + + F E I D+
Sbjct: 3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 42
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 27.7 bits (61), Expect = 0.078
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 1 MKSSFLKVVMSKVP---IFVILGSTGTGKSKLGIEIAKKFNGEIIS 43
+ FLK ++ +P ++ G +GK+ L + + G+ ++
Sbjct: 139 VVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 184
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.6 bits (60), Expect = 0.080
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
++LG+ GK I +K+ IS M
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQISTGDM 34
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 27.6 bits (60), Expect = 0.094
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
V++G G GK +I + IS M
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHISTGDM 34
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.2 bits (59), Expect = 0.12
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
V++G G GK I +K+ IS M
Sbjct: 4 VLMGLPGAGKGTQADRIVEKYGTPHISTGDM 34
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 27.0 bits (58), Expect = 0.12
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
++G G GKS +G ++A++ N E +D
Sbjct: 6 FLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI 37
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 27.3 bits (59), Expect = 0.13
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 13 VPIFVILGSTGTGKSKLGIEIAKKFN 38
+P+ +GTGK+ L ++
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLIPALC 27
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 27.2 bits (59), Expect = 0.14
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 14 PIFV-ILGSTGTGKSKLGIEIAKKFNGEIISADS 46
P + + G T +GKS + +I + +
Sbjct: 2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQ 35
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 26.7 bits (59), Expect = 0.16
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 5 FLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
+ V VP+ V L ++LG + II+A +
Sbjct: 97 AVAEVGVNVPVVVRLEGN---NAELGAKKLADSGLNIIAAKGLT 137
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 26.6 bits (57), Expect = 0.19
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGE 40
+P + G GTGK+ + + K+ G
Sbjct: 32 NLPHMLFYGPPGTGKTSTILALTKELYGP 60
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 26.1 bits (56), Expect = 0.28
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 12 KVPIFV-ILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
K PI + I G+ G+GKS + + + + ++ D++
Sbjct: 1 KHPIIIGITGNIGSGKSTVA-ALLRSWGYPVLDLDAL 36
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.2 bits (56), Expect = 0.30
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45
PI ++LG TGKS + + N I D
Sbjct: 30 PITLVLGLRRTGKSSIIKIGINELNLPYIYLD 61
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 25.6 bits (56), Expect = 0.42
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 7 KVVMSKVPIFVILGSTGTGKS 27
K+ ++ P+ I G +G GK
Sbjct: 18 KISCAECPVL-ITGESGVGKE 37
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 25.6 bits (55), Expect = 0.46
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 12 KVPIFVILGSTGTGKSKLGIEIAKKFNGE 40
+ + ++ G G GK+ L I + +G
Sbjct: 2 PIAVTLLTGFLGAGKTTLLRHILNEQHGY 30
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.1 bits (53), Expect = 0.67
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 15 IFVILGSTGTGKSKL 29
I +I+G G+GKS L
Sbjct: 25 INLIIGQNGSGKSSL 39
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 25.1 bits (53), Expect = 0.70
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 16 FVILGSTGTGKSKLGIEIAKKFNGEIIS 43
++LG+ G GKS L +G
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAE 31
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 25.0 bits (53), Expect = 0.75
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 13 VPIF--VILGSTGTGKSKL 29
+P + V++G G GKS L
Sbjct: 2 LPTYKLVVVGDGGVGKSAL 20
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 24.9 bits (53), Expect = 0.83
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 11 SKVPIFVIL-GSTGTGKSKLGIEIAKKFNGEIISADS 46
+ P +L G G+GK+ L I ++ G +I D+
Sbjct: 29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 65
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 24.8 bits (53), Expect = 0.86
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNGEII 42
+ + TG+GKS +++
Sbjct: 10 VAHLHAPTGSGKSTKVPAAYAAQGYKVL 37
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 24.8 bits (52), Expect = 0.96
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 14 PIFVILGSTGTGKS 27
I +I+G G+GKS
Sbjct: 24 GINLIIGQNGSGKS 37
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 24.5 bits (52), Expect = 0.99
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 16 FVILGSTGTGKSKLGIEIAK-KFNGEIISADSMQGLKFLVECRVKLELLRL 65
F+++G+ GTGKS L + + KF + ++ ++ K L++
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 58
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 24.3 bits (51), Expect = 1.2
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 16 FVIL--GSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
F I G +GK + + N + + S+
Sbjct: 7 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 41
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 24.4 bits (53), Expect = 1.2
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
+ + KVP+ V L T I I SA ++
Sbjct: 99 RELELKVPLVVRLEGT---NVHEAQNILTNSGLPITSAVDLE 137
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 24.0 bits (51), Expect = 1.5
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGE--IISADSMQGLKFLVECR 57
+LG+TGTGK+ ++ + +++ + + + E R
Sbjct: 32 TLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFR 74
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 24.3 bits (51), Expect = 1.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 15 IFVILGSTGTGKS 27
I+G G+GKS
Sbjct: 27 FTSIIGPNGSGKS 39
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 24.2 bits (51), Expect = 1.6
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNGEIIS 43
I ++ G G GKS + ++ + + + I+
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGIN 31
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 23.9 bits (50), Expect = 1.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 14 PIFVILGSTGTGKSKLGIEIAKKFN 38
I+ +G G GK+ L K+ +
Sbjct: 47 MIYGSIGRVGIGKTTLAKFTVKRVS 71
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 23.7 bits (50), Expect = 1.8
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 13 VPIF--VILGSTGTGKSKL 29
+ + +++GS G GKS L
Sbjct: 2 LALHKVIMVGSGGVGKSAL 20
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 23.7 bits (50), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 14 PIFVILGSTGTGKSKLGIEIAKKFNGEIISADS 46
PI VI G +GTGKS L ++ ++ + S
Sbjct: 3 PI-VISGPSGTGKSTLLKKLFAEYPDSFGFSVS 34
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 24.1 bits (51), Expect = 1.8
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 9 VMSKVPIFVILGSTGTGKS 27
+ K + ++ G GK+
Sbjct: 5 IFRKKRLTIMDLHPGAGKT 23
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 23.8 bits (50), Expect = 1.9
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 7 KVVMSKVPIFVILGSTGTGKSKL 29
K+ K+ V+LG + GKS L
Sbjct: 3 KICQFKL---VLLGESAVGKSSL 22
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 23.6 bits (49), Expect = 2.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 16 FVILGSTGTGKSKL 29
V++G G GKS L
Sbjct: 6 VVLIGEQGVGKSTL 19
>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne
encephalitis virus [TaxId: 11084]}
Length = 302
Score = 23.6 bits (51), Expect = 2.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 54 VECRVKLELLRLK 66
V C V LE L++K
Sbjct: 288 VTCEVGLEKLKMK 300
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 23.8 bits (50), Expect = 2.3
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 15 IFVILGSTGTGKSKL 29
+ I+G G+GKS +
Sbjct: 26 VTAIVGPNGSGKSNI 40
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 23.5 bits (49), Expect = 2.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 16 FVILGSTGTGKSKL 29
V++G G GKS L
Sbjct: 9 LVVVGGGGVGKSAL 22
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 23.7 bits (50), Expect = 2.4
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45
I + G G+GK+ + + ++ AD
Sbjct: 4 IVGLTGGIGSGKTTIA-NLFTDLGVPLVDAD 33
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 23.6 bits (49), Expect = 2.5
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 3 SSFLKVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGE 40
++L+ P +LG GTGK+ ++ + + +
Sbjct: 33 GNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDK 70
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 23.7 bits (50), Expect = 2.5
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 10 MSKVPIFVILGSTGTGKSKLGIEIAKKFNGEIISADSM 47
M K V+LG+ G G+ + + K
Sbjct: 2 MRK--TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 37
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 23.4 bits (49), Expect = 2.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 16 FVILGSTGTGKSKL 29
VI+G GK+ L
Sbjct: 5 LVIVGDGACGKTCL 18
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 23.4 bits (49), Expect = 3.0
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 16 FVILGSTGTGKSKL 29
I G G GKS L
Sbjct: 5 LAIFGRAGVGKSAL 18
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 23.4 bits (49), Expect = 3.0
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNGEIIS 43
+ V+ G G G + E ++
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 23.4 bits (49), Expect = 3.0
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKF 37
+ V+ G + GKS + + ++
Sbjct: 4 VVVLSGPSAVGKSTVVRCLRERI 26
>d1ok8a2 f.10.1.1 (A:1-297) Envelope glycoprotein {Dengue virus type
2 [TaxId: 11060]}
Length = 297
Score = 23.1 bits (50), Expect = 3.0
Identities = 5/13 (38%), Positives = 12/13 (92%)
Query: 54 VECRVKLELLRLK 66
++CR++++ L+LK
Sbjct: 283 LKCRLRMDKLQLK 295
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 23.3 bits (49), Expect = 3.0
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 8/31 (25%)
Query: 7 KVVMSKVPI--------FVILGSTGTGKSKL 29
+V ++ VP+ ++ G+TGTGKS L
Sbjct: 36 QVTVAGVPMPRDAEPRHLLVNGATGTGKSVL 66
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 23.3 bits (49), Expect = 3.1
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNGEIISAD 45
I + G G+GKS + +I AD
Sbjct: 5 IVALTGGIGSGKSTVA-NAFADLGINVIDAD 34
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 23.1 bits (49), Expect = 3.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 5 FLKVVMSKVPIFVILGSTGTGKSKL 29
L + + + I+G TGKS L
Sbjct: 24 ILSAITQPMVVVAIVGLYRTGKSYL 48
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 23.1 bits (49), Expect = 3.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 15 IFVILGSTGTGKSKL 29
FVILG TG GK+
Sbjct: 28 YFVILGPTGAGKTLF 42
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 23.4 bits (49), Expect = 3.1
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 12 KVPIF--VILGSTGTGKSKL 29
K +F ++LG G GKS L
Sbjct: 3 KSSLFKVILLGDGGVGKSSL 22
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 23.1 bits (48), Expect = 3.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 10 MSKVPIFVILGSTGTGKSKL 29
M++ +ILG G GK+ +
Sbjct: 2 MTREMRILILGLDGAGKTTI 21
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 23.4 bits (49), Expect = 3.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 15 IFVILGSTGTGKS 27
I+G+ G+GKS
Sbjct: 28 FTAIVGANGSGKS 40
>d1r0ka2 c.2.1.3 (A:3-126,A:265-290)
1-deoxy-D-xylulose-5-phosphate reductoisomerase
{Zymomonas mobilis [TaxId: 542]}
Length = 150
Score = 23.2 bits (49), Expect = 3.2
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 17 VILGSTGT-GKSKLGI--EIAKKFNGEIISADS 46
+LG+TG+ G S L + ++ ++A+
Sbjct: 6 TVLGATGSIGHSTLDLIERNLDRYQVIALTANR 38
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 23.4 bits (50), Expect = 3.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 15 IFVILGSTGTGKSKL 29
V +G +G GKS L
Sbjct: 28 FVVFVGPSGCGKSTL 42
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 23.1 bits (48), Expect = 3.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 11 SKVPIFVILGSTGTGKSKL 29
S P +I G +GK+ L
Sbjct: 1 SYQPSIIIAGPQNSGKTSL 19
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 23.1 bits (48), Expect = 3.6
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 9 VMSKVPIFVILGSTGTGKSKL 29
V+ KV +ILG +G GK+ L
Sbjct: 1 VLLKV---IILGDSGVGKTSL 18
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 23.1 bits (48), Expect = 3.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 16 FVILGSTGTGKSKL 29
V++G G GKS L
Sbjct: 8 LVVVGGGGVGKSAL 21
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 23.0 bits (48), Expect = 3.8
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 16 FVILGSTGTGKSKL 29
V++G GK+ L
Sbjct: 12 CVVVGDGAVGKTCL 25
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 23.1 bits (48), Expect = 3.9
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 16 FVILGSTGTGKSKL 29
V++G + GK+ L
Sbjct: 5 IVVVGDSQCGKTAL 18
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 23.0 bits (49), Expect = 4.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 15 IFVILGSTGTGKSKL 29
V+LG TG GKS
Sbjct: 26 YCVLLGPTGAGKSVF 40
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 22.7 bits (48), Expect = 4.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 15 IFVILGSTGTGKSKL 29
F ILG +G GK+
Sbjct: 33 RFGILGPSGAGKTTF 47
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 23.0 bits (48), Expect = 4.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 16 FVILGSTGTGKSKL 29
V+LGS G GKS L
Sbjct: 6 LVVLGSGGVGKSAL 19
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 23.0 bits (48), Expect = 4.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 16 FVILGSTGTGKSKL 29
+LG +GKS L
Sbjct: 8 LGVLGDARSGKSSL 21
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 22.8 bits (47), Expect = 4.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 11 SKVPIFVILGSTGTGKSKL 29
+P + G + GKS
Sbjct: 21 GGLPEIALAGRSNVGKSSF 39
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 22.8 bits (47), Expect = 4.5
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 17 VILGSTGTGKSKL 29
ILG GKS L
Sbjct: 8 AILGYRSVGKSSL 20
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK
{Escherichia coli [TaxId: 562]}
Length = 347
Score = 22.9 bits (49), Expect = 4.5
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 27 SKLGIEIAKKFNGEIISADSMQGLKFLVECRVKLELLRL 65
+ G+ I + G ++ M G + +V E L L
Sbjct: 296 QQAGLTIERNLIGAYCTSLDMTGFSITL-LKVDDETLAL 333
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 22.7 bits (47), Expect = 4.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 16 FVILGSTGTGKSKL 29
+ILG +G GK+ L
Sbjct: 5 VIILGDSGVGKTSL 18
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 22.7 bits (47), Expect = 4.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 16 FVILGSTGTGKSKL 29
V++G GTGK+
Sbjct: 6 LVLVGDGGTGKTTF 19
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 22.6 bits (48), Expect = 4.9
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 17 VILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
++ G +G GKS+ +++ K N + D+++
Sbjct: 19 LLTGRSGIGKSECALDLINK-NHLFVGDDAIE 49
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 22.6 bits (48), Expect = 4.9
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 15 IFVILGSTGTGKSKL 29
++LG +G GK+
Sbjct: 31 FMILLGPSGCGKTTT 45
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 22.7 bits (47), Expect = 4.9
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 16 FVILGSTGTGKSKL 29
V++G+ GKS +
Sbjct: 5 MVVVGNGAVGKSSM 18
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 22.6 bits (47), Expect = 5.1
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 16 FVILGSTGTGKSKL 29
V LG GK+ L
Sbjct: 3 LVFLGEQSVGKTSL 16
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 22.7 bits (47), Expect = 5.2
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 14 PIFVILGSTGTGKSKL 29
+ + G G GKS
Sbjct: 25 LVTTLSGGNGAGKSTT 40
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 22.6 bits (47), Expect = 5.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 16 FVILGSTGTGKSKL 29
V++G+ G GKS L
Sbjct: 6 LVVVGAGGVGKSAL 19
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 22.6 bits (47), Expect = 5.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 16 FVILGSTGTGKSKL 29
V+LG GK+ L
Sbjct: 6 VVLLGEGCVGKTSL 19
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 22.7 bits (48), Expect = 5.5
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 12 KVPIFVILGSTGTGKSKLGIEIAK 35
+ I GK+ L IA+
Sbjct: 45 RGLIV---APPKAGKTMLLQNIAQ 65
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 22.5 bits (47), Expect = 5.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 15 IFVILGSTGTGKSKLGIEIAKKFNG 39
++++ +G GKS L + K
Sbjct: 4 LYIVSAPSGAGKSSLIQALLKTQPL 28
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 22.6 bits (47), Expect = 6.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 16 FVILGSTGTGKSKL 29
V+LGS G GKS L
Sbjct: 6 VVVLGSGGVGKSAL 19
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 22.3 bits (46), Expect = 6.3
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 16 FVILGSTGTGKSKL 29
V++G GK+ L
Sbjct: 6 CVVVGDGAVGKTCL 19
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 22.2 bits (46), Expect = 6.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 17 VILGSTGTGKSKL 29
+ G+ G GKS L
Sbjct: 6 AVFGAGGVGKSSL 18
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 22.4 bits (48), Expect = 6.6
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 12 KVPIFVILGSTGTGKSKLGIEIA---KKFNGEII 42
K+ +F G G GK+ L +E+ K +G
Sbjct: 70 KIGLF---GGAGVGKTVLIMELINNVAKAHGGYS 100
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 22.5 bits (47), Expect = 6.6
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 16 FVILGSTGTGKSKL 29
V++G+ G GK+ L
Sbjct: 8 IVLIGNAGVGKTCL 21
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 22.1 bits (46), Expect = 6.6
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 16 FVILGSTGTGKSKL 29
+ LG +G GK+
Sbjct: 8 LLALGDSGVGKTTF 21
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 22.4 bits (48), Expect = 6.7
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 15 IFVILGSTGTGKSKL 29
V+LG +G GK+
Sbjct: 34 FLVLLGPSGCGKTTT 48
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 22.2 bits (47), Expect = 6.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 15 IFVILGSTGTGKSKL 29
+ I GSTG+GK+ L
Sbjct: 64 MLAITGSTGSGKTSL 78
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 22.1 bits (47), Expect = 7.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 15 IFVILGSTGTGKSKL 29
+ I+GS+G+GKS
Sbjct: 30 VISIIGSSGSGKSTF 44
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 22.2 bits (47), Expect = 7.3
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 17 VILGSTGTGKSKLGIEIA--------------KKFNGEIISADSMQGLKFLVECR 57
+I G +G GKS+ +E+ + + + I + L L+E R
Sbjct: 18 LITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIR 72
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus
thermophilus [TaxId: 274]}
Length = 208
Score = 22.1 bits (46), Expect = 7.8
Identities = 5/36 (13%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 7 KVVMSKVPIFVILGSTGTGKSKLGIEIAKKFNGEII 42
+V + ++P+ + +G+ +L ++ + N ++
Sbjct: 3 EVAVYQIPVL-----SPSGRRELAADLPAEINPHLL 33
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 22.1 bits (47), Expect = 8.2
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 15 IFVILGSTGTGKSKL 29
I G +G GKS +
Sbjct: 30 IIAFAGPSGGGKSTI 44
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 22.0 bits (46), Expect = 8.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 16 FVILGSTGTGKSKLGIEIAKKFNGEIISAD 45
+++G TG GK+++ +AK N I +
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVE 81
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 22.1 bits (46), Expect = 8.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 16 FVILGSTGTGKSKLGIEIAKKFNGEIISADSMQ 48
+++G TG+GK+ + +AK + I +D+
Sbjct: 71 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATS 103
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 22.1 bits (46), Expect = 8.8
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 16 FVILGSTGTGKSKL 29
+++G++G GKS L
Sbjct: 9 LLLIGNSGVGKSCL 22
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 21.9 bits (46), Expect = 9.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 15 IFVILGSTGTGKSKL 29
+ +I+G G+GKS L
Sbjct: 32 VTLIIGPNGSGKSTL 46
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 21.8 bits (46), Expect = 9.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 15 IFVILGSTGTGKSKL 29
+ I+G +G+GKS L
Sbjct: 31 VIGIVGRSGSGKSTL 45
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 21.9 bits (46), Expect = 9.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 15 IFVILGSTGTGKSKL 29
IF ++G G GK+
Sbjct: 30 IFGLIGPNGAGKTTT 44
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 21.8 bits (45), Expect = 9.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 16 FVILGSTGTGKSKL 29
++I+G TG GKS L
Sbjct: 6 YIIIGDTGVGKSCL 19
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 21.8 bits (46), Expect = 10.0
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 15 IFVILGSTGTGKSKL-----GIEIAK---KFNGEIISADSMQGLK 51
I ++G G GKS L G+ K +F G+ + A S L
Sbjct: 27 ILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLA 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.376
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 233,323
Number of extensions: 8325
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 123
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)