BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17474
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 474
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 162/241 (67%), Gaps = 5/241 (2%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
D AI A DLCEDEDVS+R+QAIK+LP E P+V DIL QLLQT+D+ E ++V
Sbjct: 81 DSAINAQLDLCEDEDVSIRRQAIKELPQFA--TGENLPRVADILTQLLQTDDSAEFNLVN 138
Query: 62 SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121
++++++ K D KG L G+F+ I VRE+ ++FL K+K L +++TKE+EE + +
Sbjct: 139 NALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 198
Query: 122 CKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
KK+L +VTG+EF+ M +L+ + Q+++G+++L+E++ A+L ++F+PS+P+ VDR
Sbjct: 199 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRL 258
Query: 182 IYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP 241
+ C+ VP + ST FV+Y CEQVLP L + + GLD QLE LKLLAE+S
Sbjct: 259 LQCTRQAVPLFSQNVHSTRFVTYFCEQVLPNLGTLTTPVE---GLDIQLEVLKLLAEMSS 315
Query: 242 F 242
F
Sbjct: 316 F 316
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 262 VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK 316
+R+QAIK+LP E P+V DIL QLLQT+D+ E ++V ++++++ K D K
Sbjct: 98 IRRQAIKELPQFA--TGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK 150
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 162/241 (67%), Gaps = 5/241 (2%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
D AI A DLCEDEDVS+R+QAIK+LP E P+V DIL QLLQT+D+ E ++V
Sbjct: 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFA--TGENLPRVADILTQLLQTDDSAEFNLVN 121
Query: 62 SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121
++++++ K D KG L G+F+ I VRE+ ++FL K+K L +++TKE+EE + +
Sbjct: 122 NALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181
Query: 122 CKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
KK+L +VTG+EF+ M +L+ + Q+++G+++L+E++ A+L ++F+PS+P+ VDR
Sbjct: 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRL 241
Query: 182 IYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP 241
+ C+ VP + ST FV+Y CEQVLP L + + GLD QLE LKLLAE+S
Sbjct: 242 LQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVE---GLDIQLEVLKLLAEMSS 298
Query: 242 F 242
F
Sbjct: 299 F 299
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 225 GLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDC---------LFVRKQAIKDLPSLCK 275
G+ + +L A+ P + H P+ S ++ + +R+QAIK+LP
Sbjct: 37 GVKGGTKEKRLAAQFIPKFFKH--FPELADSAINAQLDLCEDEDVSIRRQAIKELPQFA- 93
Query: 276 ENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK 316
E P+V DIL QLLQT+D+ E ++V ++++++ K D K
Sbjct: 94 -TGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK 133
>pdb|3GS3|A Chain A, Structure Of The N-Terminal Heat Domain Of Symplekin From
D. Melanogaster
Length = 257
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
++ +E++ L D ++ VRKQ + + +CK E P V +++ LL+ N V
Sbjct: 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQ----VI 107
Query: 62 SSIMTLCKNDIKGALKGMFNLIE 84
++ C + K L+ + +L+E
Sbjct: 108 KRVIQACGSIYKNGLQYLCSLME 130
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 262 VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVL 318
VRKQ + + +CK E P V +++ LL+ N + V + ++ KN ++ L
Sbjct: 69 VRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL 125
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 155 ELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVS 203
E+M ++ H KS DP NP + DR + H P L + F++
Sbjct: 42 EIMAVLFFHTMRYKSQDPRNPHN-DRFVLSKGHAAPILYAVWAEAGFLA 89
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 155 ELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVS 203
E+M ++ H KS DP NP + DR + H P L + F++
Sbjct: 44 EIMAVLFFHTMRYKSQDPRNPHN-DRFVLSKGHAAPILYAVWAEAGFLA 91
>pdb|1LRV|A Chain A, A Leucine-Rich Repeat Variant With A Novel Repetitive
Protein Structural Motif
Length = 244
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 8 LFDLCEDEDVSVRKQAIKDLP--SLCKENNEYTPKVTDILGQLLQTNDTTEL 57
LF DED VRK K LP SL + P+V I+ L+ +D EL
Sbjct: 151 LFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLEL 202
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 14 DEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK 73
D+ VR AI+ CK+N Y+PK+ + Q+ + +T + + +++ ND K
Sbjct: 102 DKSACVRATAIESTAQRCKKNPIYSPKIVE-QSQITAFDKSTNVRRATAFAISVI-ND-K 158
Query: 74 GALKGMFNLIEISNGPVR 91
+ + NL++ NG VR
Sbjct: 159 ATIPLLINLLKDPNGDVR 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,810,113
Number of Sequences: 62578
Number of extensions: 380658
Number of successful extensions: 916
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 23
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)