Query psy17474
Match_columns 343
No_of_seqs 99 out of 105
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 23:26:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05918 API5: Apoptosis inhib 100.0 1.6E-79 3.6E-84 628.4 25.3 255 2-265 58-320 (556)
2 KOG2213|consensus 100.0 4.7E-69 1E-73 527.7 18.6 254 2-292 60-317 (460)
3 PF05918 API5: Apoptosis inhib 99.7 4.5E-18 9.8E-23 175.9 6.5 73 250-322 54-135 (556)
4 KOG2213|consensus 98.6 2.5E-08 5.4E-13 100.0 4.6 42 261-314 76-117 (460)
5 PF01602 Adaptin_N: Adaptin N 97.4 0.034 7.4E-07 56.1 20.7 281 3-317 114-411 (526)
6 PF01602 Adaptin_N: Adaptin N 97.3 0.051 1.1E-06 54.8 21.9 264 4-298 80-355 (526)
7 PF12717 Cnd1: non-SMC mitotic 97.1 0.037 8.1E-07 49.5 16.0 162 16-185 1-174 (178)
8 PTZ00429 beta-adaptin; Provisi 97.0 0.35 7.5E-06 53.2 24.8 280 2-317 139-438 (746)
9 PF14500 MMS19_N: Dos2-interac 96.8 0.15 3.3E-06 49.1 18.5 227 14-261 10-256 (262)
10 PF13646 HEAT_2: HEAT repeats; 96.4 0.031 6.8E-07 42.8 8.7 84 5-97 1-86 (88)
11 cd00020 ARM Armadillo/beta-cat 96.4 0.027 5.8E-07 44.5 8.5 96 4-99 8-116 (120)
12 PF12717 Cnd1: non-SMC mitotic 96.2 0.17 3.7E-06 45.2 13.9 135 1-142 23-175 (178)
13 PTZ00429 beta-adaptin; Provisi 96.0 2.8 6.1E-05 46.2 24.2 272 3-312 105-394 (746)
14 PF12719 Cnd3: Nuclear condens 95.7 0.17 3.8E-06 48.7 12.4 169 11-218 35-207 (298)
15 PF13646 HEAT_2: HEAT repeats; 95.6 0.03 6.5E-07 43.0 5.6 49 2-56 30-78 (88)
16 PF10363 DUF2435: Protein of u 95.5 0.091 2E-06 43.1 8.3 84 3-86 3-89 (92)
17 PF10508 Proteasom_PSMB: Prote 95.3 1.1 2.4E-05 46.6 17.4 291 4-316 120-465 (503)
18 PRK09687 putative lyase; Provi 94.5 0.25 5.3E-06 47.8 9.5 63 3-66 54-117 (280)
19 PRK13800 putative oxidoreducta 94.5 8.1 0.00018 43.2 22.3 90 3-100 621-710 (897)
20 PF02985 HEAT: HEAT repeat; I 93.8 0.06 1.3E-06 35.1 2.6 29 5-33 2-30 (31)
21 KOG2025|consensus 93.4 1.5 3.1E-05 48.3 13.4 111 197-320 78-197 (892)
22 PRK09687 putative lyase; Provi 93.4 3 6.5E-05 40.4 14.6 95 2-99 89-184 (280)
23 KOG1062|consensus 93.1 8.8 0.00019 42.8 18.8 279 15-319 246-548 (866)
24 KOG2171|consensus 92.2 16 0.00035 42.0 19.8 223 45-320 10-243 (1075)
25 KOG1061|consensus 91.7 10 0.00022 41.9 17.2 282 3-320 86-384 (734)
26 PLN03200 cellulose synthase-in 90.9 17 0.00036 44.7 19.2 95 184-279 754-864 (2102)
27 KOG1020|consensus 90.8 25 0.00054 41.9 19.7 60 12-72 901-963 (1692)
28 KOG2025|consensus 90.5 12 0.00027 41.4 16.3 276 7-293 130-448 (892)
29 COG5096 Vesicle coat complex, 90.1 9.1 0.0002 42.5 15.1 69 4-74 93-161 (757)
30 PLN03200 cellulose synthase-in 89.0 19 0.00041 44.3 17.7 288 4-312 489-811 (2102)
31 cd00020 ARM Armadillo/beta-cat 88.9 0.75 1.6E-05 36.2 4.5 64 3-66 49-117 (120)
32 PF12348 CLASP_N: CLASP N term 87.7 11 0.00024 34.1 11.9 127 6-132 56-192 (228)
33 KOG1061|consensus 87.4 7.4 0.00016 42.9 12.2 271 2-317 120-420 (734)
34 KOG2171|consensus 86.8 13 0.00028 42.7 13.9 133 2-136 388-535 (1075)
35 PF01347 Vitellogenin_N: Lipop 86.8 9.1 0.0002 40.1 12.3 248 38-320 323-594 (618)
36 KOG0166|consensus 85.1 17 0.00037 38.7 13.1 235 11-296 118-377 (514)
37 PF10508 Proteasom_PSMB: Prote 84.4 26 0.00056 36.6 14.1 142 5-154 79-237 (503)
38 PRK13800 putative oxidoreducta 84.0 6 0.00013 44.2 9.8 88 6-99 745-832 (897)
39 PF11935 DUF3453: Domain of un 81.0 42 0.00091 31.7 13.0 69 11-100 1-69 (239)
40 KOG2259|consensus 80.4 87 0.0019 34.9 16.3 226 8-302 378-611 (823)
41 COG5218 YCG1 Chromosome conden 80.3 21 0.00046 39.1 11.7 112 179-300 65-186 (885)
42 PF03715 Noc2: Noc2p family; 79.8 21 0.00046 35.2 10.9 156 19-207 130-297 (299)
43 KOG1058|consensus 79.7 11 0.00024 42.0 9.5 95 3-99 134-231 (948)
44 PF12755 Vac14_Fab1_bd: Vacuol 79.6 4.8 0.0001 33.3 5.4 49 2-50 26-78 (97)
45 PF01347 Vitellogenin_N: Lipop 79.5 13 0.00028 39.1 9.8 68 3-75 521-592 (618)
46 KOG1060|consensus 78.7 19 0.00042 40.4 11.0 167 8-186 397-573 (968)
47 COG1413 FOG: HEAT repeat [Ener 77.4 64 0.0014 30.9 13.3 77 2-86 73-149 (335)
48 KOG1943|consensus 76.8 17 0.00036 41.9 10.1 85 176-271 732-833 (1133)
49 PF13513 HEAT_EZ: HEAT-like re 76.5 3.9 8.5E-05 29.1 3.6 38 17-54 1-42 (55)
50 COG1413 FOG: HEAT repeat [Ener 76.4 12 0.00026 35.9 8.0 85 2-93 179-263 (335)
51 COG5240 SEC21 Vesicle coat com 75.3 72 0.0016 35.1 13.8 97 2-101 302-410 (898)
52 KOG1058|consensus 74.8 25 0.00053 39.4 10.4 185 112-323 15-209 (948)
53 PF00514 Arm: Armadillo/beta-c 74.1 4 8.6E-05 27.7 3.0 29 4-32 13-41 (41)
54 PF05804 KAP: Kinesin-associat 73.2 27 0.00059 38.6 10.5 140 135-300 468-614 (708)
55 PF08506 Cse1: Cse1; InterPro 73.2 56 0.0012 33.2 12.1 95 26-125 71-192 (370)
56 TIGR02270 conserved hypothetic 72.9 19 0.0004 37.1 8.7 86 4-99 87-172 (410)
57 PF08713 DNA_alkylation: DNA a 72.6 12 0.00027 33.4 6.6 78 3-82 120-197 (213)
58 PF01465 GRIP: GRIP domain; I 68.8 7 0.00015 28.2 3.3 32 43-74 10-41 (46)
59 KOG0212|consensus 68.6 74 0.0016 34.7 12.1 185 36-244 204-409 (675)
60 PF13513 HEAT_EZ: HEAT-like re 68.5 4.6 9.9E-05 28.8 2.4 29 2-30 27-55 (55)
61 PF07539 DRIM: Down-regulated 67.7 54 0.0012 28.9 9.4 121 3-142 17-138 (141)
62 KOG1243|consensus 67.0 16 0.00034 40.1 7.0 131 33-172 323-462 (690)
63 KOG1077|consensus 65.7 2.4E+02 0.0052 31.9 17.2 248 36-298 142-419 (938)
64 PF04826 Arm_2: Armadillo-like 65.0 29 0.00063 33.4 7.8 94 5-100 56-160 (254)
65 KOG0212|consensus 63.4 1.1E+02 0.0023 33.6 12.1 156 6-163 253-427 (675)
66 KOG1020|consensus 62.3 2.7E+02 0.0059 33.9 15.7 168 128-313 741-961 (1692)
67 cd06561 AlkD_like A new struct 61.3 42 0.00091 29.6 7.6 76 6-82 108-183 (197)
68 KOG2259|consensus 60.4 19 0.00042 39.7 6.1 31 3-33 198-228 (823)
69 smart00638 LPD_N Lipoprotein N 57.2 59 0.0013 34.0 9.0 53 17-74 494-547 (574)
70 KOG0166|consensus 55.1 63 0.0014 34.6 8.7 118 4-121 153-287 (514)
71 smart00549 TAFH TAF homology. 54.7 32 0.0007 28.8 5.2 44 92-136 3-47 (92)
72 PF03378 CAS_CSE1: CAS/CSE pro 54.6 1.5E+02 0.0033 30.7 11.4 224 23-261 95-345 (435)
73 PF12348 CLASP_N: CLASP N term 54.1 1.3E+02 0.0028 27.1 9.7 70 2-72 93-163 (228)
74 KOG1240|consensus 53.9 1.8E+02 0.004 34.5 12.5 101 86-188 614-764 (1431)
75 KOG1824|consensus 53.0 2.4E+02 0.0052 32.9 13.0 226 79-319 10-249 (1233)
76 cd07064 AlkD_like_1 A new stru 53.0 92 0.002 28.8 8.6 76 5-82 117-192 (208)
77 smart00638 LPD_N Lipoprotein N 52.5 3E+02 0.0065 28.8 18.9 249 36-321 285-551 (574)
78 smart00185 ARM Armadillo/beta- 52.2 14 0.0003 24.0 2.3 28 4-31 13-40 (41)
79 PF04380 BMFP: Membrane fusoge 50.8 49 0.0011 26.4 5.6 36 109-144 24-62 (79)
80 PF01465 GRIP: GRIP domain; I 50.2 23 0.00049 25.6 3.3 34 286-319 10-43 (46)
81 KOG4500|consensus 48.9 2.6E+02 0.0056 30.1 11.8 183 3-186 87-325 (604)
82 PRK05686 fliG flagellar motor 48.8 72 0.0016 31.7 7.7 78 19-97 160-244 (339)
83 smart00582 RPR domain present 45.1 55 0.0012 26.9 5.4 36 19-54 11-46 (121)
84 PRK15338 type III secretion sy 43.8 3.4E+02 0.0075 28.0 11.6 98 39-152 144-261 (372)
85 PF01603 B56: Protein phosphat 41.3 4.1E+02 0.0088 27.2 15.1 31 40-70 133-163 (409)
86 PF14838 INTS5_C: Integrator c 39.6 5.9E+02 0.013 28.5 20.4 210 14-244 40-291 (696)
87 KOG1059|consensus 39.6 90 0.002 35.0 7.2 49 7-55 303-351 (877)
88 PF10193 Telomere_reg-2: Telom 38.8 1.1E+02 0.0023 26.0 6.2 85 14-98 15-110 (114)
89 PF06685 DUF1186: Protein of u 38.5 81 0.0017 30.6 6.0 47 5-51 113-161 (249)
90 KOG2956|consensus 37.5 3.7E+02 0.008 28.9 11.0 95 5-99 331-431 (516)
91 PF14500 MMS19_N: Dos2-interac 35.8 2E+02 0.0043 27.8 8.3 46 84-129 9-54 (262)
92 PF07531 TAFH: NHR1 homology t 35.5 53 0.0011 27.7 3.7 44 92-136 4-48 (96)
93 PF04826 Arm_2: Armadillo-like 35.4 92 0.002 30.0 5.9 29 5-33 136-164 (254)
94 PF10521 DUF2454: Protein of u 35.1 3.2E+02 0.007 26.3 9.6 64 7-70 123-204 (282)
95 KOG2956|consensus 34.9 3.6E+02 0.0077 29.0 10.4 70 35-104 279-360 (516)
96 PF10395 Utp8: Utp8 family; I 33.7 3.1E+02 0.0068 30.4 10.1 73 114-194 548-621 (670)
97 PF06861 BALF1: BALF1 protein; 33.2 1.8E+02 0.0039 27.2 7.0 90 114-214 54-153 (182)
98 PF10363 DUF2435: Protein of u 33.0 1.2E+02 0.0027 24.7 5.5 58 262-319 19-79 (92)
99 PF05823 Gp-FAR-1: Nematode fa 32.8 44 0.00096 29.8 3.1 133 113-254 5-150 (154)
100 PF14631 FancD2: Fanconi anaem 32.3 9.9E+02 0.021 29.0 14.9 279 2-313 191-540 (1426)
101 PF07079 DUF1347: Protein of u 32.0 4.1E+02 0.009 28.6 10.3 95 131-243 314-413 (549)
102 KOG1060|consensus 31.4 8.6E+02 0.019 28.0 15.4 280 5-318 145-464 (968)
103 smart00755 Grip golgin-97, Ran 31.2 68 0.0015 23.3 3.3 31 43-74 9-39 (46)
104 KOG2235|consensus 30.9 1.5E+02 0.0033 32.7 7.1 39 153-191 606-646 (776)
105 PF04282 DUF438: Family of unk 30.9 1.6E+02 0.0036 23.4 5.6 50 108-159 8-57 (71)
106 PRK14964 DNA polymerase III su 30.6 5.3E+02 0.011 27.4 11.0 92 6-100 182-287 (491)
107 KOG2160|consensus 30.5 6.1E+02 0.013 26.0 11.2 68 8-75 129-202 (342)
108 PF03130 HEAT_PBS: PBS lyase H 30.2 67 0.0014 20.2 2.8 26 19-50 1-26 (27)
109 PF05327 RRN3: RNA polymerase 30.1 3.8E+02 0.0083 28.6 10.0 104 5-109 75-217 (563)
110 KOG1293|consensus 29.4 8.4E+02 0.018 27.2 13.0 18 16-33 390-407 (678)
111 KOG1243|consensus 29.4 2.7E+02 0.006 31.0 8.8 120 86-207 266-415 (690)
112 KOG1242|consensus 29.3 7.9E+02 0.017 26.9 12.1 65 228-293 273-343 (569)
113 PF11838 ERAP1_C: ERAP1-like C 29.1 4.5E+02 0.0098 24.7 9.4 30 129-163 233-263 (324)
114 COG5218 YCG1 Chromosome conden 29.1 1.6E+02 0.0035 32.7 6.9 58 12-72 141-198 (885)
115 PF04286 DUF445: Protein of un 28.6 2.7E+02 0.0059 26.7 8.0 95 12-106 200-307 (367)
116 smart00567 EZ_HEAT E-Z type HE 28.6 73 0.0016 20.0 2.8 28 18-51 2-29 (30)
117 KOG1077|consensus 28.4 2.2E+02 0.0048 32.1 7.9 51 13-65 379-431 (938)
118 PRK14961 DNA polymerase III su 28.3 4.5E+02 0.0098 26.1 9.7 35 11-45 190-224 (363)
119 TIGR02270 conserved hypothetic 28.1 3E+02 0.0066 28.4 8.6 53 6-64 150-202 (410)
120 KOG1410|consensus 27.9 1.2E+02 0.0025 34.2 5.7 88 74-162 255-356 (1082)
121 KOG1824|consensus 27.6 80 0.0017 36.5 4.5 84 4-99 1008-1091(1233)
122 PF05503 Pox_G7: Poxvirus G7-l 27.4 1.4E+02 0.003 30.6 5.8 73 2-97 49-122 (363)
123 KOG1991|consensus 27.3 1.1E+03 0.023 27.7 17.7 139 154-301 588-746 (1010)
124 PF13001 Ecm29: Proteasome sta 26.4 2.1E+02 0.0047 30.0 7.3 56 15-70 386-444 (501)
125 COG5096 Vesicle coat complex, 25.2 1.5E+02 0.0033 33.2 6.1 81 2-85 126-211 (757)
126 PF13929 mRNA_stabil: mRNA sta 24.8 5.5E+02 0.012 25.7 9.3 107 121-241 101-217 (292)
127 KOG1967|consensus 24.6 1.2E+03 0.025 27.4 16.7 218 5-244 45-287 (1030)
128 PF02637 GatB_Yqey: GatB domai 24.1 2E+02 0.0042 24.9 5.5 47 73-119 91-145 (148)
129 PF08064 UME: UME (NUC010) dom 23.8 3.6E+02 0.0078 22.3 6.8 44 7-50 19-62 (107)
130 KOG4653|consensus 23.8 6.9E+02 0.015 28.9 10.7 34 2-35 767-800 (982)
131 cd08321 Pyrin_ASC-like Pyrin D 23.4 1.7E+02 0.0037 23.4 4.6 44 120-163 2-54 (82)
132 KOG0413|consensus 23.0 9.8E+02 0.021 28.5 11.7 293 6-306 619-988 (1529)
133 KOG1222|consensus 22.9 1E+03 0.023 26.2 12.5 251 5-300 347-628 (791)
134 KOG1104|consensus 22.7 6.6E+02 0.014 28.4 10.2 155 12-194 9-182 (759)
135 PF04147 Nop14: Nop14-like fam 22.6 1.2E+03 0.025 26.6 15.5 49 26-74 454-509 (840)
136 PRK05686 fliG flagellar motor 22.4 4.6E+02 0.0099 26.1 8.4 32 154-185 288-319 (339)
137 COG4789 EscV Type III secretor 22.3 1.9E+02 0.0041 31.8 5.9 92 25-125 511-609 (689)
138 PF09088 MIF4G_like: MIF4G lik 22.2 3.1E+02 0.0067 25.7 6.7 64 43-106 74-145 (191)
139 PRK07764 DNA polymerase III su 21.8 8E+02 0.017 27.8 11.0 51 117-167 314-365 (824)
140 KOG2274|consensus 21.1 1.4E+02 0.0031 34.2 4.9 65 11-75 499-565 (1005)
141 PF12530 DUF3730: Protein of u 21.0 6.9E+02 0.015 23.3 13.4 63 11-74 9-72 (234)
142 PF12765 Cohesin_HEAT: HEAT re 20.7 1.1E+02 0.0024 21.4 2.7 24 3-26 18-41 (42)
143 TIGR00207 fliG flagellar motor 20.6 4.2E+02 0.0091 26.5 7.8 87 38-125 201-320 (338)
144 cd06157 NR_LBD The ligand bind 20.6 4.5E+02 0.0099 21.5 6.9 35 114-148 84-119 (168)
145 PHA03080 putative virion core 20.5 2.2E+02 0.0049 29.2 5.7 75 2-99 50-125 (366)
146 cd08305 Pyrin Pyrin: a protein 20.4 1.4E+02 0.003 23.4 3.5 42 123-164 2-47 (73)
147 KOG2274|consensus 20.4 1.4E+03 0.03 26.7 14.5 87 233-319 468-566 (1005)
No 1
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=100.00 E-value=1.6e-79 Score=628.40 Aligned_cols=255 Identities=48% Similarity=0.805 Sum_probs=219.0
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFN 81 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~ 81 (343)
|+||||++|||||||+.||+||||+||.+||+||+|++||||||+|||||||++|+.+||+||++||++|||+||+|+|+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~ 137 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFS 137 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh---cCCchHHHHHHHHhhHhhhhhhhhhch--HHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccc---cChHHH
Q psy17474 82 LIE---ISNGPVREKCLRFLVPKIKMLGRDIMT--KEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLS---QSLAGQ 153 (343)
Q Consensus 82 qI~---~~de~vRe~~lkFl~~kl~~l~~~ll~--~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~---~t~~g~ 153 (343)
||. +|||.+|||+|+||++|++++++++++ +|+|++|+++|||+|+|||++||++||++|+++++| +|++||
T Consensus 138 ~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~ 217 (556)
T PF05918_consen 138 QIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGR 217 (556)
T ss_dssp HHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHH
T ss_pred HHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHH
Confidence 999 789999999999999999999999999 799999999999999999999999999999999995 799999
Q ss_pred HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHH
Q psy17474 154 KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEAL 233 (343)
Q Consensus 154 qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lL 233 (343)
|+|+++|.+||+|+++|+++|+++|||+|+|+++|+||||++++|++||+|||++|||+|++|++ +.|+++|
T Consensus 218 qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e--------~~kl~lL 289 (556)
T PF05918_consen 218 QELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPE--------DRKLDLL 289 (556)
T ss_dssp HHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-------------HHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCCh--------HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999965 6999999
Q ss_pred HHHHhhcCCCCCCCCchhhHHHHHHHHHHHHh
Q psy17474 234 KLLAELSPFYVVHEDTPQHITSIVDCLFVRKQ 265 (343)
Q Consensus 234 K~lAEls~~~~~~e~~pqllesi~d~LL~r~q 265 (343)
|++||+|||||++| ++++++++|+.|+.+++
T Consensus 290 k~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 290 KLLAELSPFCGAQD-ARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHHHHTT----T-HHHHHHHHHHHHHTTS-
T ss_pred HHHHHHcCCCCccc-HHHHHHHHHHHHHHhCC
Confidence 99999999999998 99999999999985544
No 2
>KOG2213|consensus
Probab=100.00 E-value=4.7e-69 Score=527.73 Aligned_cols=254 Identities=39% Similarity=0.620 Sum_probs=231.8
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFN 81 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~ 81 (343)
++||||++|||||+|++||+||||+||+|||+ +.++||+|+|+|||| |++|+|+|.
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLn----------------------k~sl~~Lf~ 115 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLN----------------------KASLTGLFG 115 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHH----------------------HHHHHHHHh
Confidence 68999999999999999999999999999999 999999999999999 899999999
Q ss_pred hhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHH---HHHHH
Q psy17474 82 LIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQ---KELME 158 (343)
Q Consensus 82 qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~---qeLv~ 158 (343)
||..||+.+|||+++||++|+++++.+++++|+|++|+++|||+|+||||+||.+||++|.++|++++.+|+ |+|++
T Consensus 116 ~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~ 195 (460)
T KOG2213|consen 116 QIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAE 195 (460)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 56666
Q ss_pred HHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCC-CCCCCCcccccCCchhhHHHHHHHH
Q psy17474 159 IIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPK-LDQIPETKDEAGGLDNQLEALKLLA 237 (343)
Q Consensus 159 li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~-l~~L~~~~~e~~~~~~kl~lLK~lA 237 (343)
.++++|++|. |+++|+++|||||||+++|+||||||++||+||.|+|+|++|+ ++.+++ ++||++||+||
T Consensus 196 ~~e~~a~lda-f~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e--------~rkL~lLK~lA 266 (460)
T KOG2213|consen 196 EQEGLADLDA-FNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTE--------ERKLDLLKALA 266 (460)
T ss_pred HHhhhhccCc-ccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchH--------HHHHHHHHHHH
Confidence 6667777888 9999999999999999999999999999999999999999998 888865 79999999999
Q ss_pred hhcCCCCCCCCchhhHHHHHHHHHHHHhhhhccchhhhhcCCCcchhHHHHHHHh
Q psy17474 238 ELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLL 292 (343)
Q Consensus 238 Els~~~~~~e~~pqllesi~d~LL~r~qAik~lp~~c~~~~~~~~~v~diL~Qll 292 (343)
|||||| +.+.+.|+++++|+.|+.+|+|-|.-|.+=- .|+-.+-.++-+|.
T Consensus 267 EMss~t-taq~a~q~Lpsi~elLk~yMpa~kt~ee~~f---syvEClly~~h~Lg 317 (460)
T KOG2213|consen 267 EMSSYT-TAQAARQMLPSIVELLKEYMPAPKTGEEMQF---SYVECLLYALHHLG 317 (460)
T ss_pred HhCccc-hHHHHHHHHHHHHHHHHHhcccCCccHHHHH---HHHHHHHHHHHHHh
Confidence 999999 5677999999999999999997766554432 34444444444443
No 3
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=99.72 E-value=4.5e-18 Score=175.89 Aligned_cols=73 Identities=47% Similarity=0.653 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHH---------HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhh
Q psy17474 250 PQHITSIVDCLF---------VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSL 320 (343)
Q Consensus 250 pqllesi~d~LL---------~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~~~~~ 320 (343)
|.+.+.++|+++ ||+||||+||.+||+|++|++||||||+|||||||+.|+++||+||++||++|||.|+-
T Consensus 54 P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~ 133 (556)
T PF05918_consen 54 PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT 133 (556)
T ss_dssp GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 444445555555 99999999999999999999999999999999999999999999999999999999986
Q ss_pred hc
Q psy17474 321 SL 322 (343)
Q Consensus 321 ~~ 322 (343)
++
T Consensus 134 ~l 135 (556)
T PF05918_consen 134 GL 135 (556)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 4
>KOG2213|consensus
Probab=98.63 E-value=2.5e-08 Score=100.04 Aligned_cols=42 Identities=40% Similarity=0.589 Sum_probs=37.2
Q ss_pred HHHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhhc
Q psy17474 261 FVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKND 314 (343)
Q Consensus 261 L~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~d 314 (343)
-||+||||+||.||++ ++++||+|+|+|||+ +.||-.||.+=
T Consensus 76 ~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLn----------k~sl~~Lf~~~ 117 (460)
T KOG2213|consen 76 GIRRQAIKGLPLFCKG--DALSRVNDVLVQLLN----------KASLTGLFGQI 117 (460)
T ss_pred hhHHHHHhccchhccC--chhhhhHHHHHHHHH----------HHHHHHHHhhh
Confidence 3999999999999999 899999999999999 66777777653
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.35 E-value=0.034 Score=56.09 Aligned_cols=281 Identities=17% Similarity=0.147 Sum_probs=152.2
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchh-hHhHHHHhhccCChhHHHHHHHHHHHHH--hhChhh---hH
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPK-VTDILGQLLQTNDTTELSVVQSSIMTLC--KNDIKG---AL 76 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~k-iaDVL~QLLqtdd~~E~~~V~~sL~~Ll--k~Dpk~---tL 76 (343)
.-+..+..+..|.++.||+.|+-.+..+.+.+|+.++. +.+.|.++|...|+ .++..|+.-+. +.+|+. .+
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~---~V~~~a~~~l~~i~~~~~~~~~~~ 190 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDP---SVVSAALSLLSEIKCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSH---HHHHHHHHHHHHHHCTHHHHTTHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcc---hhHHHHHHHHHHHccCcchhhhhH
Confidence 34567788888999999999999999999999999988 79999999966663 44445555444 445554 46
Q ss_pred HHHHHhhh----cCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhccc-ccChH
Q psy17474 77 KGMFNLIE----ISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRL-SQSLA 151 (343)
Q Consensus 77 ~~lf~qI~----~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~-~~t~~ 151 (343)
..++.++. ..++-.+.++++++..-. +.....-.+ ..+...+...++.. . -..+++..+.+-. .....
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~-~~~~~~~~~---~~~i~~l~~~l~s~--~-~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRRYA-PMEPEDADK---NRIIEPLLNLLQSS--S-PSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTTST-SSSHHHHHH---HHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHSSSHH
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHhcc-cCChhhhhH---HHHHHHHHHHhhcc--c-cHHHHHHHHHHHHhhcchH
Confidence 66666654 357778888998888432 221111110 23444444444421 1 1112222222111 22222
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHH
Q psy17474 152 GQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLE 231 (343)
Q Consensus 152 g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~ 231 (343)
-.+..++.+..... .+|+..--=.+.++.+...-. .+++.+.--.++ .+. .+ +....|..
T Consensus 264 ~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~------~~~v~~~~~~~~-~l~--~~-----~d~~Ir~~ 323 (526)
T PF01602_consen 264 LLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSN------PPAVFNQSLILF-FLL--YD-----DDPSIRKK 323 (526)
T ss_dssp HHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHC------HHHHGTHHHHHH-HHH--CS-----SSHHHHHH
T ss_pred HHHhhHHHHHHHhh------cccchhehhHHHHHHHhhccc------chhhhhhhhhhh-eec--CC-----CChhHHHH
Confidence 22333333333221 222221101223332222111 111110000000 111 01 11134555
Q ss_pred HHHHHHhhcCCCCCCCCchhhHHHHHHHH------HHHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHHHHHH
Q psy17474 232 ALKLLAELSPFYVVHEDTPQHITSIVDCL------FVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQS 305 (343)
Q Consensus 232 lLK~lAEls~~~~~~e~~pqllesi~d~L------L~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~~v~~ 305 (343)
-|..+..++.- +++...++.+..-+ -+|+.+++.+-.+|.-.+.......|++.+++...+..=.+.+-+
T Consensus 324 ~l~lL~~l~~~----~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~ 399 (526)
T PF01602_consen 324 ALDLLYKLANE----SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIIN 399 (526)
T ss_dssp HHHHHHHH--H----HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHH
T ss_pred HHHHHhhcccc----cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHH
Confidence 55555555331 22333333333333 178889999999999888888889999999999876665666667
Q ss_pred HHHHHHhhchhh
Q psy17474 306 SIMTLCKNDIKV 317 (343)
Q Consensus 306 sl~~l~~~d~~~ 317 (343)
.+..++..+|..
T Consensus 400 ~i~~ll~~~~~~ 411 (526)
T PF01602_consen 400 VIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHSTTT
T ss_pred HHHHHhhcChhh
Confidence 788888777664
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.35 E-value=0.051 Score=54.82 Aligned_cols=264 Identities=16% Similarity=0.139 Sum_probs=157.0
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhh----HHHH
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGA----LKGM 79 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~t----L~~l 79 (343)
++|++..=+.++++.+|-.|++.+..+| +|+.++-+.+.+.++|...+|.=+...=-++..+++.+|... +..+
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l 157 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKL 157 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 6777777788999999999999999999 679999999999999998888333334446778888888642 2223
Q ss_pred HHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHH-HHHHH
Q psy17474 80 FNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQ-KELME 158 (343)
Q Consensus 80 f~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~-qeLv~ 158 (343)
..-+...+..++..++..+.+= ...+..+. ..-..+...+.+.+.+-++--...++.+|..+......... ..+++
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~ 234 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEI--KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIE 234 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHH--HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHH--ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHH
Confidence 3333335668898888888753 11122211 22233334444555444333334466666654332222221 45777
Q ss_pred HHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHh
Q psy17474 159 IIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAE 238 (343)
Q Consensus 159 li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAE 238 (343)
.+..... +....| ..+|++... .-.++..++......+...+.. .+...|.-.|+.+..
T Consensus 235 ~l~~~l~-------s~~~~V--~~e~~~~i~----~l~~~~~~~~~~~~~L~~lL~s--------~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 235 PLLNLLQ-------SSSPSV--VYEAIRLII----KLSPSPELLQKAINPLIKLLSS--------SDPNVRYIALDSLSQ 293 (526)
T ss_dssp HHHHHHH-------HHHHHH--HHHHHHHHH----HHSSSHHHHHHHHHHHHHHHTS--------SSHHHHHHHHHHHHH
T ss_pred HHHHHhh-------ccccHH--HHHHHHHHH----HhhcchHHHHhhHHHHHHHhhc--------ccchhehhHHHHHHH
Confidence 7776654 222334 455554443 2222333444444444444431 122578889999999
Q ss_pred hcCCCCCCCCchhhHHHHHHHHH------HHHhhhhccchhhhhcCCCcchhHHHHHHHh-hcCCch
Q psy17474 239 LSPFYVVHEDTPQHITSIVDCLF------VRKQAIKDLPSLCKENNEYTPKVTDILGQLL-QTNDTT 298 (343)
Q Consensus 239 ls~~~~~~e~~pqllesi~d~LL------~r~qAik~lp~~c~~~~~~~~~v~diL~Qll-~~d~~~ 298 (343)
++.... +... .....+..+. ||+.|+.-|-.+|.. +++..|.+-|.+.+ .+.|..
T Consensus 294 l~~~~~--~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~n~~~Il~eL~~~l~~~~d~~ 355 (526)
T PF01602_consen 294 LAQSNP--PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE--SNVKEILDELLKYLSELSDPD 355 (526)
T ss_dssp HCCHCH--HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHC--HH
T ss_pred hhcccc--hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc--cchhhHHHHHHHHHHhccchh
Confidence 987651 1111 2223333333 899999999999976 56888999998888 453443
No 7
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.10 E-value=0.037 Score=49.48 Aligned_cols=162 Identities=18% Similarity=0.186 Sum_probs=106.7
Q ss_pred chhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh---hhhH-HHHHHhhhcCCchHH
Q psy17474 16 DVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI---KGAL-KGMFNLIEISNGPVR 91 (343)
Q Consensus 16 D~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp---k~tL-~~lf~qI~~~de~vR 91 (343)
|+.||..++..+..+|...|..+.+..+-+...|+.+++.=+...=..|..|+..|. ||.+ ..+..-+.-.++.+|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 578999999999999999999999999999999999987666666666777777776 6665 555555555677899
Q ss_pred HHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc--------cCChhHHHHHHHHHhhcccccChHHHHHHHHHHHHH
Q psy17474 92 EKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR--------NVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHH 163 (343)
Q Consensus 92 e~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~--------dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~eq 163 (343)
.-+..|+.+-.+...++.+. ..+.+.+-..-. ..+.+++..+|.+|-.. .+....+.+|++-+-.+
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~----~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~--i~~d~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIY----NNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDF--IDKDKQKESLVEKLCQR 154 (178)
T ss_pred HHHHHHHHHHHHhccchHHH----HHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHH
Confidence 99999999876664444432 233333322211 36677777777776522 22244445566555544
Q ss_pred hccCCCCCCCCchhhhhHHhhH
Q psy17474 164 AELSKSFDPSNPEDVDRSIYCS 185 (343)
Q Consensus 164 a~Ld~~f~~sD~e~vdRli~C~ 185 (343)
..-... ..++..+.....|+
T Consensus 155 ~~~~~~--~~~~~~~~d~~~~l 174 (178)
T PF12717_consen 155 FLNAVV--DEDERVLRDILYCL 174 (178)
T ss_pred HHHHcc--cccHHHHHHHHHHH
Confidence 322110 22445555555554
No 8
>PTZ00429 beta-adaptin; Provisional
Probab=96.96 E-value=0.35 Score=53.16 Aligned_cols=280 Identities=14% Similarity=0.121 Sum_probs=144.0
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcch--hhHhHHHHhhccCChhHHHHHHHHHHHHHhhC---h----
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTP--KVTDILGQLLQTNDTTELSVVQSSIMTLCKND---I---- 72 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~--kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~D---p---- 72 (343)
+..+.++...+.|.++-|||.|+=++..+-+.+|+.+. +..+.|..||...|+ .++.||+..|..+. |
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp---~Vv~nAl~aL~eI~~~~~~~l~ 215 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNP---VVASNAAAIVCEVNDYGSEKIE 215 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCc---cHHHHHHHHHHHHHHhCchhhH
Confidence 44567778888999999999999999999999998864 678889998875444 56777777666654 3
Q ss_pred --hhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCCh-hHHHHHHHHHhhcccccC
Q psy17474 73 --KGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTG-DEFMQIMDLLAWSRLSQS 149 (343)
Q Consensus 73 --k~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~-~EF~l~m~lL~~l~~~~t 149 (343)
+..+..+++.+..-+|-.+-.+|+++... .+ .+ ..|++ .+...+...|+..++ .=|.-+.-++...+.. .
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y-~P--~~--~~e~~-~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~ 288 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAAQ-RP--SD--KESAE-TLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-S 288 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CC--CC--cHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-C
Confidence 44555666666556777777888888541 11 10 12333 333444454554432 2222222222211111 1
Q ss_pred hHHHHHHHHHH-HHHhccCCCCCCCCch--hhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCc
Q psy17474 150 LAGQKELMEII-KHHAELSKSFDPSNPE--DVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGL 226 (343)
Q Consensus 150 ~~g~qeLv~li-~eqa~Ld~~f~~sD~e--~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~ 226 (343)
+.-+++++.-+ .-...|. .++++ ++ .+.++...+- .+..-|..+ .+.++..+++=.- + .
T Consensus 289 ~~~~~~~~~rl~~pLv~L~----ss~~eiqyv--aLr~I~~i~~-----~~P~lf~~~-~~~Ff~~~~Dp~y-I-----K 350 (746)
T PTZ00429 289 QELIERCTVRVNTALLTLS----RRDAETQYI--VCKNIHALLV-----IFPNLLRTN-LDSFYVRYSDPPF-V-----K 350 (746)
T ss_pred HHHHHHHHHHHHHHHHHhh----CCCccHHHH--HHHHHHHHHH-----HCHHHHHHH-HHhhhcccCCcHH-H-----H
Confidence 11122222111 1111221 22333 22 1112211111 112223332 3444455543111 0 1
Q ss_pred hhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH-----HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHH
Q psy17474 227 DNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF-----VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELS 301 (343)
Q Consensus 227 ~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL-----~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~ 301 (343)
..||++|-.+| + .+++.+.+..+.+-.- .++.||+.+=.+|.--+.....+.++|.+++...... ..
T Consensus 351 ~~KLeIL~~La------n-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~-v~ 422 (746)
T PTZ00429 351 LEKLRLLLKLV------T-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPEL-LP 422 (746)
T ss_pred HHHHHHHHHHc------C-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchh-HH
Confidence 35677665442 1 1223333332222111 4566777777777765666888999999999653321 11
Q ss_pred HHHHHHHHHHhhchhh
Q psy17474 302 VVQSSIMTLCKNDIKV 317 (343)
Q Consensus 302 ~v~~sl~~l~~~d~~~ 317 (343)
.+=..+..|++..|..
T Consensus 423 e~i~vik~IlrkyP~~ 438 (746)
T PTZ00429 423 QVVTAAKDIVRKYPEL 438 (746)
T ss_pred HHHHHHHHHHHHCccH
Confidence 1223445566666653
No 9
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.81 E-value=0.15 Score=49.06 Aligned_cols=227 Identities=14% Similarity=0.189 Sum_probs=133.2
Q ss_pred ccchhHHHHHhhhhhhhhhccCC--cchhhHhHHHHhhc--cCChhHHHHHHHHHHHHHhhCh------hhhHHHHHHhh
Q psy17474 14 DEDVSVRKQAIKDLPSLCKENNE--YTPKVTDILGQLLQ--TNDTTELSVVQSSIMTLCKNDI------KGALKGMFNLI 83 (343)
Q Consensus 14 DeD~~IR~qAIk~Lp~lck~~~e--~v~kiaDVL~QLLq--tdd~~E~~~V~~sL~~Llk~Dp------k~tL~~lf~qI 83 (343)
++|..+|..|+.-|..+...-|. .-+.=+-+|.+.+. -+|..-+..+-.+|.+|.++.. ...+.++|+++
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhC
Confidence 67889999999999988777663 23334455555554 2666666666788888886654 33455555543
Q ss_pred hc--CCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc-cCChhHHHHHHHHHhhc-ccccChHHHHHHHHH
Q psy17474 84 EI--SNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR-NVTGDEFMQIMDLLAWS-RLSQSLAGQKELMEI 159 (343)
Q Consensus 84 ~~--~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~-dVT~~EF~l~m~lL~~l-~~~~t~~g~qeLv~l 159 (343)
.. ---..|..+.+.+..=+..-..++ +++-.-++..+..++. .-.+.-..+.+++++.+ +.|.-...-++|.+.
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~~~~~l--~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~ 167 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLENHREAL--QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDV 167 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhHHHH--HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 22 122578777777665444433333 3333334444444443 22344555566666643 233433334677777
Q ss_pred HHHHhccCCCCCCCCc------hhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHH
Q psy17474 160 IKHHAELSKSFDPSNP------EDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEAL 233 (343)
Q Consensus 160 i~eqa~Ld~~f~~sD~------e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lL 233 (343)
+.---=.+=.-+|.|| +-...+..|+ ..+..|-.|..-.++-+++. +....|+|.|
T Consensus 168 ~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl----------~s~~~fa~~~~p~LleKL~s--------~~~~~K~D~L 229 (262)
T PF14500_consen 168 FSCYFPITFRPPPNDPYGITREDLKRALRNCL----------SSTPLFAPFAFPLLLEKLDS--------TSPSVKLDSL 229 (262)
T ss_pred hhheeeeeeeCCCCCCCCCCHHHHHHHHHHHh----------cCcHhhHHHHHHHHHHHHcC--------CCcHHHHHHH
Confidence 6633222211123455 4556778887 23445555666666655553 1235899999
Q ss_pred HHHHhhcCCCCCCCCchhhHHHHHHHHH
Q psy17474 234 KLLAELSPFYVVHEDTPQHITSIVDCLF 261 (343)
Q Consensus 234 K~lAEls~~~~~~e~~pqllesi~d~LL 261 (343)
+.+...++.+|. +....+..++++++-
T Consensus 230 ~tL~~c~~~y~~-~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 230 QTLKACIENYGA-DSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHCCH-HHHHHHHHHHHHHHH
Confidence 999999998884 457777778877653
No 10
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.37 E-value=0.031 Score=42.84 Aligned_cols=84 Identities=27% Similarity=0.350 Sum_probs=62.6
Q ss_pred HHHHHhhc-cccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhh
Q psy17474 5 IEALFDLC-EDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLI 83 (343)
Q Consensus 5 i~a~lDLc-EDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI 83 (343)
|+.+++.. +|+|+.||..|++.|.++.. +++.+.|.++|+++++ .+-+.+...|=++..+.....+...+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~---~vr~~a~~aL~~i~~~~~~~~L~~~l 71 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKDEDP---MVRRAAARALGRIGDPEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTSSSH---HHHHHHHHHHHCCHHHHTHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 56788888 89999999999999997754 3788999999977665 35566666666777777777777777
Q ss_pred hcCCc-hHHHHHHHH
Q psy17474 84 EISNG-PVREKCLRF 97 (343)
Q Consensus 84 ~~~de-~vRe~~lkF 97 (343)
.++++ .+|..++.=
T Consensus 72 ~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 72 QDDDDEVVREAAAEA 86 (88)
T ss_dssp TC-SSHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHhh
Confidence 66544 568776653
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.35 E-value=0.027 Score=44.54 Aligned_cols=96 Identities=23% Similarity=0.290 Sum_probs=70.5
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcch-----hhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh------
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTP-----KVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI------ 72 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~-----kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp------ 72 (343)
.+..++++..+.+..+|..|+..|-.+|+++|+... .+...|.++|+++++.=....=++|..+....|
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 577888999999999999999999999998777644 455688999998766444455566666655443
Q ss_pred --hhhHHHHHHhhhcCCchHHHHHHHHhh
Q psy17474 73 --KGALKGMFNLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 73 --k~tL~~lf~qI~~~de~vRe~~lkFl~ 99 (343)
.|.+..+...+..++..+|+.++.++.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345566666665566678877777765
No 12
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.23 E-value=0.17 Score=45.24 Aligned_cols=135 Identities=22% Similarity=0.235 Sum_probs=83.9
Q ss_pred ChHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhH-hHHHHhhccCChhHHHHHHHHHHHHHhh-ChhhhHHH
Q psy17474 1 MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVT-DILGQLLQTNDTTELSVVQSSIMTLCKN-DIKGALKG 78 (343)
Q Consensus 1 ~e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kia-DVL~QLLqtdd~~E~~~V~~sL~~Llk~-Dpk~tL~~ 78 (343)
+|.-+..++..-.|+|+.||++|+.-|-.+-..+.-.++... .-+..+|..+++.=....+..+.++.+. +|.. +..
T Consensus 23 ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~-i~~ 101 (178)
T PF12717_consen 23 VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNI-IYN 101 (178)
T ss_pred HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchH-HHH
Confidence 466778899999999999999999999998876333333322 3334466556655566788888888887 6643 233
Q ss_pred HHHhh----hc---------CCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccC---ChhHHHHHHHHHh
Q psy17474 79 MFNLI----EI---------SNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNV---TGDEFMQIMDLLA 142 (343)
Q Consensus 79 lf~qI----~~---------~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dV---T~~EF~l~m~lL~ 142 (343)
.|..+ .+ .++.-|.++++|+-..+.. .+..|..+...+.+++... ++....-+.-+|.
T Consensus 102 ~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~------d~~~~~l~~kl~~~~~~~~~~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 102 NFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK------DKQKESLVEKLCQRFLNAVVDEDERVLRDILYCLS 175 (178)
T ss_pred HHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 33333 22 1235688999999876552 2245555555555555544 4444433444443
No 13
>PTZ00429 beta-adaptin; Provisional
Probab=95.97 E-value=2.8 Score=46.24 Aligned_cols=272 Identities=13% Similarity=0.178 Sum_probs=142.9
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhH-HHHHH
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGAL-KGMFN 81 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL-~~lf~ 81 (343)
-|+|++.-=|.|.++.||--|+|.+..+.- |+.+.-+..-+.+.|...+|-=+...=-++..+++.+|.-.- .++..
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~ 182 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKK 182 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHH
Confidence 378898888889999999999999987765 578888888888999876655444445566677777884311 22333
Q ss_pred hhh----cCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhc---ccCChhHHH--HHHHHHhhcccccChHH
Q psy17474 82 LIE----ISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKIL---RNVTGDEFM--QIMDLLAWSRLSQSLAG 152 (343)
Q Consensus 82 qI~----~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL---~dVT~~EF~--l~m~lL~~l~~~~t~~g 152 (343)
++. .++..|.-.++.-+.+- ..-.++.+ +.....+.+.+ .+.+ |+- .++++|..++- ++...
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI-~~~~~~~l-----~l~~~~~~~Ll~~L~e~~--EW~Qi~IL~lL~~y~P-~~~~e 253 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEV-NDYGSEKI-----ESSNEWVNRLVYHLPECN--EWGQLYILELLAAQRP-SDKES 253 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHH-HHhCchhh-----HHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHhcCC-CCcHH
Confidence 332 24556666666655532 21111111 11222222222 2322 332 24444433211 11111
Q ss_pred HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHH
Q psy17474 153 QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEA 232 (343)
Q Consensus 153 ~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~l 232 (343)
...+++.+..+ +..+++ .| .+.|++-.+-+-.. . ....+.-++.++-+-+-.|... +++.|.=.
T Consensus 254 ~~~il~~l~~~------Lq~~N~-AV--Vl~Aik~il~l~~~-~-~~~~~~~~~~rl~~pLv~L~ss-----~~eiqyva 317 (746)
T PTZ00429 254 AETLLTRVLPR------MSHQNP-AV--VMGAIKVVANLASR-C-SQELIERCTVRVNTALLTLSRR-----DAETQYIV 317 (746)
T ss_pred HHHHHHHHHHH------hcCCCH-HH--HHHHHHHHHHhcCc-C-CHHHHHHHHHHHHHHHHHhhCC-----CccHHHHH
Confidence 23334444332 223332 33 44444433322111 1 1245555555554432233222 23588888
Q ss_pred HHHHHhhcCCCCCCCCchhhHHHHHHHHH--------HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHHHHH
Q psy17474 233 LKLLAELSPFYVVHEDTPQHITSIVDCLF--------VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 304 (343)
Q Consensus 233 LK~lAEls~~~~~~e~~pqllesi~d~LL--------~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~~v~ 304 (343)
|+.+..+.... |..+..-++..+ ||+-++.=|-.+|.+ +++.+|..=|.+-. +| .+.+.++
T Consensus 318 Lr~I~~i~~~~------P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane--~Nv~~IL~EL~eYa-~d--~D~ef~r 386 (746)
T PTZ00429 318 CKNIHALLVIF------PNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP--SVAPEILKELAEYA-SG--VDMVFVV 386 (746)
T ss_pred HHHHHHHHHHC------HHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCc--ccHHHHHHHHHHHh-hc--CCHHHHH
Confidence 88887776543 444544444443 788888888888876 44555544444433 23 3335566
Q ss_pred HHHHHHHh
Q psy17474 305 SSIMTLCK 312 (343)
Q Consensus 305 ~sl~~l~~ 312 (343)
.++..+=+
T Consensus 387 ~aIrAIg~ 394 (746)
T PTZ00429 387 EVVRAIAS 394 (746)
T ss_pred HHHHHHHH
Confidence 66555443
No 14
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.73 E-value=0.17 Score=48.69 Aligned_cols=169 Identities=20% Similarity=0.275 Sum_probs=99.9
Q ss_pred hccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHH-HHHHHHHHHHhhChhhhHHHHHHhhhc-CCc
Q psy17474 11 LCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELS-VVQSSIMTLCKNDIKGALKGMFNLIEI-SNG 88 (343)
Q Consensus 11 LcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~-~V~~sL~~Llk~Dpk~tL~~lf~qI~~-~de 88 (343)
-....|..||..|++-|..+|-=++++......++.+.++.+ ..++. ..=+++..++...... .|+.-.. +++
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~----~~~~~~~~~~~ 109 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGID----IFDSESDNDES 109 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCch----hccchhccCcc
Confidence 345678899999999999999999999999999999999766 44443 3333333333333211 1111111 011
Q ss_pred hHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc--cCChhHHHHHHHHHhhcccccChHHHHHHHHHHHHHhcc
Q psy17474 89 PVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR--NVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAEL 166 (343)
Q Consensus 89 ~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~--dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~L 166 (343)
.-...+++.+..-+..- .+++.....+++-|.+- .++. ++ .-|-.++.-
T Consensus 110 ~~~~~l~~~l~~~l~~~-----~~~~~~~a~EGl~KLlL~~~i~~------------------~~--~vL~~Lll~---- 160 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSE-----NPELQAIAVEGLCKLLLSGRISD------------------PP--KVLSRLLLL---- 160 (298)
T ss_pred chHhHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhcCCCCc------------------HH--HHHHHHHHH----
Confidence 23345555555443333 45677777777777642 3333 11 122222221
Q ss_pred CCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCC
Q psy17474 167 SKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPE 218 (343)
Q Consensus 167 d~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~ 218 (343)
=|+|...+ -.|+.||+..-.|.|+.....++ ..+.+-.+|.+..+..
T Consensus 161 --yF~p~t~~-~~~LrQ~L~~Ffp~y~~s~~~~Q--~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 161 --YFNPSTED-NQRLRQCLSVFFPVYASSSPENQ--ERLAEAFLPTLRTLSN 207 (298)
T ss_pred --HcCcccCC-cHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHHh
Confidence 26664333 34899999999999998666554 6666667776555543
No 15
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.64 E-value=0.03 Score=42.96 Aligned_cols=49 Identities=37% Similarity=0.487 Sum_probs=41.6
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTE 56 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E 56 (343)
+++++.++.++.|+|+.||.+|+..|..+. -++..+.|.+++++++...
T Consensus 30 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~~l~~~~~~~ 78 (88)
T PF13646_consen 30 PEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIKLLQDDDDEV 78 (88)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHHHHTC-SSHH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHHHHcCCCcHH
Confidence 468999999999999999999999999995 2668899999999876533
No 16
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.52 E-value=0.091 Score=43.14 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=71.1
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccC---CcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHH
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENN---EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGM 79 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~---e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~l 79 (343)
++++..+....|+.+-||..|+..|-.+.+... ..++++.+++.+.|+.+|+==.-.+=+.|.+|...+|+.++..+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 456666777789999999999999999999877 67999999999999988875555566789999999999999999
Q ss_pred HHhhhcC
Q psy17474 80 FNLIEIS 86 (343)
Q Consensus 80 f~qI~~~ 86 (343)
..+-...
T Consensus 83 ~~~y~~~ 89 (92)
T PF10363_consen 83 LDEYADP 89 (92)
T ss_pred HHHHhCc
Confidence 8876544
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.28 E-value=1.1 Score=46.62 Aligned_cols=291 Identities=15% Similarity=0.147 Sum_probs=162.1
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhh-----HhHHHHhhccCChhHHHHHHHHHHHHHhhChhh----
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKV-----TDILGQLLQTNDTTELSVVQSSIMTLCKNDIKG---- 74 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~ki-----aDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~---- 74 (343)
.+..++++..|+|..|-..|++.|-.+++. +.....+ ...|.+++...++.-+-.|-..++.+.+..+..
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 355677888999999999999999999996 4555555 777899998855555666888899998888832
Q ss_pred hHHHHHHhhhc----CCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhH-H---HH--HHHHHhhc
Q psy17474 75 ALKGMFNLIEI----SNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDE-F---MQ--IMDLLAWS 144 (343)
Q Consensus 75 tL~~lf~qI~~----~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~E-F---~l--~m~lL~~l 144 (343)
.-+|+|+++.. .|-.+|..++.-+.+= ..-+++. .-=.+.-++..+-..+.+.+.+. + .+ .|.+...+
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~L-a~~~~g~-~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~l 276 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSEL-AETPHGL-QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNL 276 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHH-HcChhHH-HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHH
Confidence 22346666543 3447999999988753 3222221 11122234455555565544433 2 11 34444444
Q ss_pred ccccChHH----HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHH--------HHHHhhcCC
Q psy17474 145 RLSQSLAG----QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVS--------YLCEQVLPK 212 (343)
Q Consensus 145 ~~~~t~~g----~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~--------y~~~~vlP~ 212 (343)
-.. .+.. ...+++.+.+. +++.|+.. ..|+--++-.+.+.+.+-.++. -+.+.+.-.
T Consensus 277 a~~-~~~~v~~~~p~~~~~l~~~------~~s~d~~~----~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 277 ARV-SPQEVLELYPAFLERLFSM------LESQDPTI----REVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHH------hCCCChhH----HHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 443 2222 23444444432 23334433 3455555556666555555551 122222222
Q ss_pred CCCCCCcccccCCchhhHHHHHHHHhhcCCCC--CCCCchhhHHHHHHHH--------H----------HHHhhhhccch
Q psy17474 213 LDQIPETKDEAGGLDNQLEALKLLAELSPFYV--VHEDTPQHITSIVDCL--------F----------VRKQAIKDLPS 272 (343)
Q Consensus 213 l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~--~~e~~pqllesi~d~L--------L----------~r~qAik~lp~ 272 (343)
....+ .+.|++.|..+|-+-...+ .-++.....+..|+.+ + +|..|.+=|=.
T Consensus 346 ~~~~~--------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~ 417 (503)
T PF10508_consen 346 IKSGS--------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQA 417 (503)
T ss_pred hcCCc--------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 22222 2589999999999953332 2233445566777762 2 55555555555
Q ss_pred hhhhcC--CCcchhHHHHHHHh--hcCCchhHHHHHHHHHHHHhhchh
Q psy17474 273 LCKENN--EYTPKVTDILGQLL--QTNDTTELSVVQSSIMTLCKNDIK 316 (343)
Q Consensus 273 ~c~~~~--~~~~~v~diL~Qll--~~d~~~e~~~v~~sl~~l~~~d~~ 316 (343)
+|.-.- +.+..-..+.-.+| ++|...|..-.+..++.-+.--+.
T Consensus 418 l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 418 LAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 544210 00111112222232 466677777777777766654433
No 18
>PRK09687 putative lyase; Provisional
Probab=94.50 E-value=0.25 Score=47.80 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=38.4
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHH-HHHHHHHH
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELS-VVQSSIMT 66 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~-~V~~sL~~ 66 (343)
+++..+..||.|+|+.+|..|+..|.++.... ....++.+.|..++..|...++. ..=.+|-.
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQDNVFNILNNLALEDKSACVRASAINATGH 117 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 46667777777777777777777777775432 22456777777775544444433 44444433
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.48 E-value=8.1 Score=43.15 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=64.2
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
.+.+.++...+|+|+.||+.|++.|..+.. +.....|.++|..+++.=+...=.+|..+....+. ...+-..
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--~~~L~~~ 692 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--APALRDH 692 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--hHHHHHH
Confidence 457888999999999999999999999864 44678899999777665555555566555332222 2334444
Q ss_pred hhcCCchHHHHHHHHhhH
Q psy17474 83 IEISNGPVREKCLRFLVP 100 (343)
Q Consensus 83 I~~~de~vRe~~lkFl~~ 100 (343)
+..+++.+|..++..|..
T Consensus 693 L~~~d~~VR~~A~~aL~~ 710 (897)
T PRK13800 693 LGSPDPVVRAAALDVLRA 710 (897)
T ss_pred hcCCCHHHHHHHHHHHHh
Confidence 445788899999887763
No 20
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.82 E-value=0.06 Score=35.12 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=25.2
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhhhhc
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKE 33 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~lck~ 33 (343)
+..++.+++|++..||..|++.|..+|+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 56788999999999999999999999874
No 21
>KOG2025|consensus
Probab=93.40 E-value=1.5 Score=48.28 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=78.5
Q ss_pred CChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH---------HHHhhh
Q psy17474 197 PSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF---------VRKQAI 267 (343)
Q Consensus 197 ~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL---------~r~qAi 267 (343)
....||.|+..|++..... ..-.-+.+++..+|-++---+..+ ....+-+.++++ +|.||+
T Consensus 78 ~e~DlV~~~f~hlLRg~Es--------kdk~VRfrvlqila~l~d~~~eid--d~vfn~l~e~l~~Rl~Drep~VRiqAv 147 (892)
T KOG2025|consen 78 KEEDLVAGTFYHLLRGTES--------KDKKVRFRVLQILALLSDENAEID--DDVFNKLNEKLLIRLKDREPNVRIQAV 147 (892)
T ss_pred chhhHHHHHHHHHHhcccC--------cchhHHHHHHHHHHHHhccccccC--HHHHHHHHHHHHHHHhccCchHHHHHH
Confidence 3345999999999985432 122468899999999977444333 444444444444 899999
Q ss_pred hccchhhhhcCCCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhh
Q psy17474 268 KDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSL 320 (343)
Q Consensus 268 k~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~~~~~ 320 (343)
+.|-.+=-+.++-=-+|.-+|.-++|-|-+.| |+.|.++-+.-|+++...
T Consensus 148 ~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~E---VRRaaLsnI~vdnsTlp~ 197 (892)
T KOG2025|consen 148 LALSRLQGDPKDEECPVVNLLKDLIQNDPSDE---VRRAALSNISVDNSTLPC 197 (892)
T ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCcHH---HHHHHHHhhccCcccchh
Confidence 99988875555555578889999999999998 567777777777766543
No 22
>PRK09687 putative lyase; Provisional
Probab=93.40 E-value=3 Score=40.38 Aligned_cols=95 Identities=26% Similarity=0.291 Sum_probs=66.1
Q ss_pred hHHHHHHHhh-ccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHH
Q psy17474 2 DQAIEALFDL-CEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMF 80 (343)
Q Consensus 2 e~Ai~a~lDL-cEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf 80 (343)
++++..+..+ .+|+|..||..|+..|..+|...+.|.++....|..++..+++.=+..+-.|| =++.....+..|.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aL---g~~~~~~ai~~L~ 165 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFAL---SVINDEAAIPLLI 165 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHH---hccCCHHHHHHHH
Confidence 4678888877 79999999999999999999888888888888777777766654333334444 2333344556666
Q ss_pred HhhhcCCchHHHHHHHHhh
Q psy17474 81 NLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 81 ~qI~~~de~vRe~~lkFl~ 99 (343)
.-+...+..||..+..-|-
T Consensus 166 ~~L~d~~~~VR~~A~~aLg 184 (280)
T PRK09687 166 NLLKDPNGDVRNWAAFALN 184 (280)
T ss_pred HHhcCCCHHHHHHHHHHHh
Confidence 6665556667766655544
No 23
>KOG1062|consensus
Probab=93.10 E-value=8.8 Score=42.79 Aligned_cols=279 Identities=14% Similarity=0.139 Sum_probs=141.7
Q ss_pred cchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhc-cCChhH--HHHHHHHHHHHHhhChhhhHHHHHHhhhc-----C
Q psy17474 15 EDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ-TNDTTE--LSVVQSSIMTLCKNDIKGALKGMFNLIEI-----S 86 (343)
Q Consensus 15 eD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq-tdd~~E--~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~-----~ 86 (343)
.|+=+-++.+|-|--+.+++++.-....|||+|..- ||.+.- -.+.=.+..+++.++|++.|.++--.|.+ .
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~ 325 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNR 325 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCC
Confidence 466677889999999999999999999999999987 555432 33556677799999999999888887754 3
Q ss_pred CchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHH-HHHHHHHHHH--
Q psy17474 87 NGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQ-KELMEIIKHH-- 163 (343)
Q Consensus 87 de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~-qeLv~li~eq-- 163 (343)
|-++|--.|+-|-.-+..= ...++++=. -|...|+|....=-.-=|+++..+---+.+... +||++++...
T Consensus 326 d~NirYvaLn~L~r~V~~d-----~~avqrHr~-tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 326 DNNIRYVALNMLLRVVQQD-----PTAVQRHRS-TILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDE 399 (866)
T ss_pred ccceeeeehhhHHhhhcCC-----cHHHHHHHH-HHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccH
Confidence 4466655554443211111 114444211 122335543222222233333333334555554 6777776632
Q ss_pred ----------hccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHH
Q psy17474 164 ----------AELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEAL 233 (343)
Q Consensus 164 ----------a~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lL 233 (343)
+.+-..|.|+..=+||.+..-+..|=-|....+-+ .|+.. |..+-+| .+....+++-
T Consensus 400 ~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~-nll~L-----------Ia~~~~e-~~~y~~~rLy 466 (866)
T KOG1062|consen 400 DFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVN-NLLRL-----------IANAFQE-LHEYAVLRLY 466 (866)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHH-HHHHH-----------HhcCCcc-hhhHHHHHHH
Confidence 00112233433333333333333332222211111 01111 1111011 1113344444
Q ss_pred HHHHhhcCCCCCCCCchhh-HHHHHHHHHHHHhhhhccchhhhhcCC--CcchhHHHHHHHhhcCCchhHHHHHHHHHHH
Q psy17474 234 KLLAELSPFYVVHEDTPQH-ITSIVDCLFVRKQAIKDLPSLCKENNE--YTPKVTDILGQLLQTNDTTELSVVQSSIMTL 310 (343)
Q Consensus 234 K~lAEls~~~~~~e~~pql-lesi~d~LL~r~qAik~lp~~c~~~~~--~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l 310 (343)
+.+.|-..-+ ++ .+. +.-++=++-.+-+=. +-.-|.+.+. .=+-|.|+|--++.+..+. ......+|..|
T Consensus 467 ~a~~~~~~~~--is--~e~l~qVa~W~IGEYGdll--l~~~~~~~p~~vtesdivd~l~~v~~~~~s~-~~tk~yal~Al 539 (866)
T KOG1062|consen 467 LALSEDTLLD--IS--QEPLLQVASWCIGEYGDLL--LDGANEEEPIKVTESDIVDKLEKVLMSHSSD-STTKGYALTAL 539 (866)
T ss_pred HHHhhhhhhh--hh--hhhHHHHHHHHhhhhhHHh--hcCccccCCCcCCHHHHHHHHHHHHHhccch-HHHHHHHHHHH
Confidence 5554432111 11 111 111111111111100 0011221111 1267899999889888888 88899999999
Q ss_pred Hhhchhhhh
Q psy17474 311 CKNDIKVLS 319 (343)
Q Consensus 311 ~~~d~~~~~ 319 (343)
+|+-+.-.+
T Consensus 540 ~KLSsr~~s 548 (866)
T KOG1062|consen 540 LKLSSRFHS 548 (866)
T ss_pred HHHHhhccc
Confidence 998766544
No 24
>KOG2171|consensus
Probab=92.20 E-value=16 Score=42.01 Aligned_cols=223 Identities=18% Similarity=0.190 Sum_probs=136.6
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhhhcC-CchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHH
Q psy17474 45 LGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEIS-NGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCK 123 (343)
Q Consensus 45 L~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~~-de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ik 123 (343)
|.||+..|+ .=+....++|.++++.-| ++.+++....++ ++.+|.-+.=+++..+.+ --.-+++|+...|...+.
T Consensus 10 l~~l~spDn-~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~-~w~~l~~e~~~siks~lL 85 (1075)
T KOG2171|consen 10 LQQLLSPDN-EVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTK-HWSRLSAEVQQSIKSSLL 85 (1075)
T ss_pred HHHhcCCCc-hHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HhhcCCHHHHHHHHHHHH
Confidence 334444455 449999999999999888 778888777664 778998887777744443 233345688888888777
Q ss_pred HhcccCChhHHHHHHHHHhhcccccChHHHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHH
Q psy17474 124 KILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVS 203 (343)
Q Consensus 124 KvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~ 203 (343)
..++.-|. ++=|..+.+.+++-|.-+-+= .=||-+.-+++|+ ++..++.+-..
T Consensus 86 ~~~~~E~~------------------~~vr~k~~dviAeia~~~l~e--~WPell~~L~q~~-------~S~~~~~rE~a 138 (1075)
T KOG2171|consen 86 EIIQSETE------------------PSVRHKLADVIAEIARNDLPE--KWPELLQFLFQST-------KSPNPSLRESA 138 (1075)
T ss_pred HHHHhccc------------------hHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHh-------cCCCcchhHHH
Confidence 77665332 233688999999988744221 3346666666666 23444444444
Q ss_pred HHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHhhhhccchhhhhc---CC-
Q psy17474 204 YLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKEN---NE- 279 (343)
Q Consensus 204 y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL~r~qAik~lp~~c~~~---~~- 279 (343)
++.=..+|..- +.. .. ..=-+++..|.+--.-.+ . -||..|.+.+-.+-..+ +.
T Consensus 139 l~il~s~~~~~--~~~----~~-~~~~~l~~lf~q~~~d~s------~---------~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 139 LLILSSLPETF--GNT----LQ-PHLDDLLRLFSQTMTDPS------S---------PVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHhhhhhh--ccc----cc-hhHHHHHHHHHHhccCCc------c---------hHHHHHHHHHHHHHHHhccchHH
Confidence 44333333111 110 00 011244555544322111 1 15555555555544433 22
Q ss_pred ------CcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhh
Q psy17474 280 ------YTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSL 320 (343)
Q Consensus 280 ------~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~~~~~ 320 (343)
.+|++-.+|.-.++.+|..=...+=++|.+|.-.+||-+.-
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~ 243 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRP 243 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHH
Confidence 37778888888888888877888999999999999987653
No 25
>KOG1061|consensus
Probab=91.72 E-value=10 Score=41.88 Aligned_cols=282 Identities=17% Similarity=0.172 Sum_probs=145.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhh-hHHHHHH
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKG-ALKGMFN 81 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~-tL~~lf~ 81 (343)
-|+|..+.=|+|+++.||.-|+|....+-- +..+..+.|=|...|..++|-.+..+.-....+++.||.- .-.|+.+
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~ 163 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRV--DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVD 163 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEee--hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhH
Confidence 478999999999999999999999876654 4778888888899999999999999999999999999842 2233333
Q ss_pred hh---hc-CCchHHHHHHHHhhHhhhhhhh---hhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHH--
Q psy17474 82 LI---EI-SNGPVREKCLRFLVPKIKMLGR---DIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAG-- 152 (343)
Q Consensus 82 qI---~~-~de~vRe~~lkFl~~kl~~l~~---~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g-- 152 (343)
++ .+ +++.|=-.++.=+.+-...-+. -.+.++....+ ...|...|.=.- ..+|..+--|.....
T Consensus 164 ~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~l----L~al~ec~EW~q---i~IL~~l~~y~p~d~~e 236 (734)
T KOG1061|consen 164 ALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKL----LEALNECTEWGQ---IFILDCLAEYVPKDSRE 236 (734)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHH----HHHHHHhhhhhH---HHHHHHHHhcCCCCchh
Confidence 33 33 3444444444444433222211 11122222222 122222211111 112222222222111
Q ss_pred HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHH
Q psy17474 153 QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEA 232 (343)
Q Consensus 153 ~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~l 232 (343)
-+.+++.+.-+ +..+++--+=--..-+.+-++++.. +.+.+.+++-|.+-.+-+.++ ..+.=.
T Consensus 237 a~~i~~r~~p~------Lqh~n~avvlsavKv~l~~~~~~~~------~~~~~~~K~~~pl~tlls~~~-----e~qyva 299 (734)
T KOG1061|consen 237 AEDICERLTPR------LQHANSAVVLSAVKVILQLVKYLKQ------VNELLFKKVAPPLVTLLSSES-----EIQYVA 299 (734)
T ss_pred HHHHHHHhhhh------hccCCcceEeehHHHHHHHHHHHHH------HHHHHHHHhcccceeeecccc-----hhhHHH
Confidence 12222222211 1111111111111222223333332 555666777777666655432 366666
Q ss_pred HHHHHhhcCCCCCCCCchhhHHHHHHHHH------HHHhhhhccchhhhh-cCCCcchhHHHHHHHhhcCCchhHHHHHH
Q psy17474 233 LKLLAELSPFYVVHEDTPQHITSIVDCLF------VRKQAIKDLPSLCKE-NNEYTPKVTDILGQLLQTNDTTELSVVQS 305 (343)
Q Consensus 233 LK~lAEls~~~~~~e~~pqllesi~d~LL------~r~qAik~lp~~c~~-~~~~~~~v~diL~Qll~~d~~~e~~~v~~ 305 (343)
|+..-.+--.+ |.....-|..++ +++.=.| |=-+|.. |++++.+ ||+++.+-....+.+-|+.
T Consensus 300 LrNi~lil~~~------p~~~~~~~~~Ff~kynDPiYvK~eK-leil~~la~~~nl~q---vl~El~eYatevD~~fvrk 369 (734)
T KOG1061|consen 300 LRNINLILQKR------PEILKVEIKVFFCKYNDPIYVKLEK-LEILIELANDANLAQ---VLAELKEYATEVDVDFVRK 369 (734)
T ss_pred HhhHHHHHHhC------hHHHHhHhHeeeeecCCchhhHHHH-HHHHHHHhhHhHHHH---HHHHHHHhhhhhCHHHHHH
Confidence 66665553222 222222222222 1100000 0011111 1123333 7888888777888888888
Q ss_pred HHHHHHhhchhhhhh
Q psy17474 306 SIMTLCKNDIKVLSL 320 (343)
Q Consensus 306 sl~~l~~~d~~~~~~ 320 (343)
|+--|.+.+.|...-
T Consensus 370 aIraig~~aik~e~~ 384 (734)
T KOG1061|consen 370 AVRAIGRLAIKAEQS 384 (734)
T ss_pred HHHHhhhhhhhhhhh
Confidence 888888887777655
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=90.87 E-value=17 Score=44.72 Aligned_cols=95 Identities=27% Similarity=0.435 Sum_probs=53.1
Q ss_pred hHHhhhhhhccCCCChh-HHHHHHH--hhcCCCCCCCCcccccCCchhhHHHHHHHHhh--------cCCCCCCCCchhh
Q psy17474 184 CSLHCVPYLCSAIPSTP-FVSYLCE--QVLPKLDQIPETKDEAGGLDNQLEALKLLAEL--------SPFYVVHEDTPQH 252 (343)
Q Consensus 184 C~~~Alp~fS~~v~St~-fv~y~~~--~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEl--------s~~~~~~e~~pql 252 (343)
|.-.|+--.+++.+... |..|+.. -|+|-.+.|.....|+..--.-|+.|-.+|-. -||++-.| .|.-
T Consensus 754 ~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e-~p~~ 832 (2102)
T PLN03200 754 NAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAE-VPSS 832 (2102)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHh-ccCc
Confidence 33344433444444333 5455444 25554444433211111111257777777774 14555444 6777
Q ss_pred HHHHHHHHH-----HHHhhhhccchhhhhcCC
Q psy17474 253 ITSIVDCLF-----VRKQAIKDLPSLCKENNE 279 (343)
Q Consensus 253 lesi~d~LL-----~r~qAik~lp~~c~~~~~ 279 (343)
++++..++= +...||.-|-.+|+|-+-
T Consensus 833 l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~ 864 (2102)
T PLN03200 833 LEPLVRCLAEGHPLVQDKAIEILSRLCRDQPV 864 (2102)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHHhccChh
Confidence 788777765 777899999999998763
No 27
>KOG1020|consensus
Probab=90.77 E-value=25 Score=41.94 Aligned_cols=60 Identities=27% Similarity=0.500 Sum_probs=46.1
Q ss_pred ccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhc--cCChh-HHHHHHHHHHHHHhhCh
Q psy17474 12 CEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ--TNDTT-ELSVVQSSIMTLCKNDI 72 (343)
Q Consensus 12 cEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq--tdd~~-E~~~V~~sL~~Llk~Dp 72 (343)
.-|.-+.|||-|||=+-.+|-++|.+ ++++|+.+.+|- +||.. =-+.|...++.+|=.-+
T Consensus 901 IlDtgvsVRKRvIKIlrdic~e~pdf-~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~ 963 (1692)
T KOG1020|consen 901 ILDTGVSVRKRVIKILRDICEETPDF-SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPV 963 (1692)
T ss_pred cCCCchhHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCC
Confidence 34677889999999999999998875 788999999998 34433 35677777777764433
No 28
>KOG2025|consensus
Probab=90.52 E-value=12 Score=41.40 Aligned_cols=276 Identities=18% Similarity=0.231 Sum_probs=138.8
Q ss_pred HHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhhhcC
Q psy17474 7 ALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEIS 86 (343)
Q Consensus 7 a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~~ 86 (343)
+++-=.-|.++.||+||...|..+=-+.++-=-+++-+|.-++|-|-+.| |++|.++-+..|++ |+.-+.---.--
T Consensus 130 ~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~E---VRRaaLsnI~vdns-Tlp~IveRarDV 205 (892)
T KOG2025|consen 130 KLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDE---VRRAALSNISVDNS-TLPCIVERARDV 205 (892)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHH---HHHHHHHhhccCcc-cchhHHHHhhhh
Confidence 34444568889999999999988875555555567888888888888888 45666666666663 444444433333
Q ss_pred CchHHHHHHHHhhHhh----hhhhhh--hchH---HHHHHHHHHHHHhc-ccCChhHH--HHHHHHHhhcccccC-hH--
Q psy17474 87 NGPVREKCLRFLVPKI----KMLGRD--IMTK---EIEEYTIDQCKKIL-RNVTGDEF--MQIMDLLAWSRLSQS-LA-- 151 (343)
Q Consensus 87 de~vRe~~lkFl~~kl----~~l~~~--ll~~---E~E~~i~~~ikKvL-~dVT~~EF--~l~m~lL~~l~~~~t-~~-- 151 (343)
++..|..+-.=+..|+ .++..- ++.. +=|.-+..-+++.+ ++- -+| --+.++|..+....+ ..
T Consensus 206 ~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~W--l~~~dgni~ElL~~ldvsnss~vav 283 (892)
T KOG2025|consen 206 SGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGW--LRFSDGNILELLERLDVSNSSEVAV 283 (892)
T ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH--hhhccccHHHHHHHhccccchHHHH
Confidence 4455533333222222 111111 1111 22222222222221 110 011 014556666655433 22
Q ss_pred -HHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCC-----------CChhHHHHHHHhhcCCCCCCCCc
Q psy17474 152 -GQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAI-----------PSTPFVSYLCEQVLPKLDQIPET 219 (343)
Q Consensus 152 -g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v-----------~St~fv~y~~~~vlP~l~~L~~~ 219 (343)
--..|..++.+..+....|+-.=.+..--=|..+..|+-..|++- ..+.|+.||...+.....- .
T Consensus 284 k~lealf~~v~e~v~~~k~f~~~~~~~~t~Eiaf~~~al~l~~~~~e~~e~le~i~pe~~~~~d~l~~~i~~~~~~-e-- 360 (892)
T KOG2025|consen 284 KALEALFSGVREDVGSCKNFDLILVEDLTPEIAFLWCALCLKSKGDEGTEFLELILPEPVVLVDYLLRYIQSVYEV-E-- 360 (892)
T ss_pred HHHHHHHHHHHHHhhhhhcccchhhhcccHHHHHHHHHHHHHhhcchhhHHHHHhCCCHHHHHHHHHHhhhhHHHH-H--
Confidence 235677778888888777751111111112233333333445433 3367777777654432211 0
Q ss_pred ccccCCch-------hhHHHHHHHHhhcCCCCCCCCch--hhHHHHHHHHH-------HHHhhhhccchhhhhcCCCcch
Q psy17474 220 KDEAGGLD-------NQLEALKLLAELSPFYVVHEDTP--QHITSIVDCLF-------VRKQAIKDLPSLCKENNEYTPK 283 (343)
Q Consensus 220 ~~e~~~~~-------~kl~lLK~lAEls~~~~~~e~~p--qllesi~d~LL-------~r~qAik~lp~~c~~~~~~~~~ 283 (343)
|..+.. .+....+.|-=++.+..-.|++. .++..+++.|- .=+--|..+.++|.+.++++.-
T Consensus 361 --~~~~~~~~~~~~~~~~fi~eqL~~i~~syD~sdE~gRkklL~vv~n~Lal~tlp~slVs~~Ve~l~~i~s~endf~~~ 438 (892)
T KOG2025|consen 361 --EESGSKSYISNYMTQEFIIEQLFRIARSYDFSDEAGRKKLLSVVYNLLALNTLPISLVSEVVEELMQIASLENDFTDD 438 (892)
T ss_pred --HhccchhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhhcchHHHH
Confidence 101222 34555555555555444333332 33445555443 0112344477889888888777
Q ss_pred hHHHHHHHhh
Q psy17474 284 VTDILGQLLQ 293 (343)
Q Consensus 284 v~diL~Qll~ 293 (343)
+.-|.+-.-.
T Consensus 439 l~EiI~eIr~ 448 (892)
T KOG2025|consen 439 LNEIIGEIRK 448 (892)
T ss_pred HHHHHHHHhc
Confidence 6666665544
No 29
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.06 E-value=9.1 Score=42.49 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=35.0
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKG 74 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~ 74 (343)
|+|.+..=.+|+.+-||--|||.+..+-- ++.+.-+.|-+.|+|....+-=+..+=-|+..+|+.|+.-
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l 161 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL 161 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh
Confidence 44555555555555555555555554433 3555555555555555555433333334444555555543
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.04 E-value=19 Score=44.28 Aligned_cols=288 Identities=16% Similarity=0.177 Sum_probs=141.8
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHh-----HHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHH
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKG 78 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaD-----VL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~ 78 (343)
||..++.|-...+..+|++|.-.|..+|.++++....|.+ -|.++|.+.++.=...+-++|..+.+..-+..+..
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~ 568 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ 568 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence 6778899999999999999999999999975554444433 57888888876444455555555555444445544
Q ss_pred HHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHHHH
Q psy17474 79 MFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELME 158 (343)
Q Consensus 79 lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~ 158 (343)
+..-+.+.+..+...++.=+.. +..+.. -++.+... ..+..-.+.+.++|.+ .+..++++-+.
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgn-Ilsl~~------~~d~~~~g------~~~~ggL~~Lv~LL~s----gs~~ikk~Aa~ 631 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGH-VLSVAS------LEDLVREG------SAANDALRTLIQLLSS----SKEETQEKAAS 631 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHH-HHhhcc------hhHHHHHh------hhccccHHHHHHHHcC----CCHHHHHHHHH
Confidence 4444434444455544442211 101000 00000000 0011122223333331 12233333222
Q ss_pred HHHHHhccCCCCC--CCCchhhhhHHhhH-----------HhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCC
Q psy17474 159 IIKHHAELSKSFD--PSNPEDVDRSIYCS-----------LHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGG 225 (343)
Q Consensus 159 li~eqa~Ld~~f~--~sD~e~vdRli~C~-----------~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~ 225 (343)
++..-+.-.++.. .-+.+.|..++..+ -.|+-...++.....-..+.-..++|-+-++-.. ..
T Consensus 632 iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~----~d 707 (2102)
T PLN03200 632 VLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS----SS 707 (2102)
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC----CC
Confidence 2222111000000 00011112222221 2333444445555555555555677755554432 22
Q ss_pred chhhHHHHHHHHhhcCCCCCCCCc--hhhHHHHHHHHH-----HHHhhhhccchhhhhcCC------Ccc--hhHHHHHH
Q psy17474 226 LDNQLEALKLLAELSPFYVVHEDT--PQHITSIVDCLF-----VRKQAIKDLPSLCKENNE------YTP--KVTDILGQ 290 (343)
Q Consensus 226 ~~~kl~lLK~lAEls~~~~~~e~~--pqllesi~d~LL-----~r~qAik~lp~~c~~~~~------~~~--~v~diL~Q 290 (343)
.+.+-..+..||=++.+...-.++ ...+..+...+- .|++|...|-++|+..+. ++. -..--|.-
T Consensus 708 ~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~ 787 (2102)
T PLN03200 708 IEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVD 787 (2102)
T ss_pred hHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHH
Confidence 256777788888777665211101 122223332222 799999999999997651 111 12223456
Q ss_pred HhhcCCchhHHH--HHHHHHHHHh
Q psy17474 291 LLQTNDTTELSV--VQSSIMTLCK 312 (343)
Q Consensus 291 ll~~d~~~e~~~--v~~sl~~l~~ 312 (343)
+|...|...... +=++|.-|.+
T Consensus 788 ~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 788 LLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred HHhcCCcchhhHHHHHHHHHHHHh
Confidence 777877766655 5566666665
No 31
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.86 E-value=0.75 Score=36.18 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=47.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcch-----hhHhHHHHhhccCChhHHHHHHHHHHH
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTP-----KVTDILGQLLQTNDTTELSVVQSSIMT 66 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~-----kiaDVL~QLLqtdd~~E~~~V~~sL~~ 66 (343)
.++..++++-.|+|+.+|..|+..|-.+|.+.++... .+...|.++|++++..-....-++|.+
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4677888888899999999999999999998765433 256778888888765544444444443
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=87.71 E-value=11 Score=34.10 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=78.5
Q ss_pred HHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhh-c---cCChhHHHHHHHHHHHHHhhCh--hhhHHHH
Q psy17474 6 EALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLL-Q---TNDTTELSVVQSSIMTLCKNDI--KGALKGM 79 (343)
Q Consensus 6 ~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLL-q---tdd~~E~~~V~~sL~~Llk~Dp--k~tL~~l 79 (343)
..+.....|.=+.|-+.|..-+-.+++.-+.+....++.+...| . .....=...+.++|.++++.-+ ...+..+
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~ 135 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEI 135 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHH
Confidence 45556666777788889988888888888888887777665533 3 3333456789999999999887 3332444
Q ss_pred HHh-hhcCCchHHHHHHHHhhHhhhhhh--hhhchH-HHHHHHHHHHHHhcccCChh
Q psy17474 80 FNL-IEISNGPVREKCLRFLVPKIKMLG--RDIMTK-EIEEYTIDQCKKILRNVTGD 132 (343)
Q Consensus 80 f~q-I~~~de~vRe~~lkFl~~kl~~l~--~~ll~~-E~E~~i~~~ikKvL~dVT~~ 132 (343)
+.+ ..+....+|..++.|+..-+...+ ...+.+ ..-.-+...+.+.+.|-+++
T Consensus 136 l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 136 LSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHH
Confidence 444 334577899999999999888888 344433 22345666778888886553
No 33
>KOG1061|consensus
Probab=87.42 E-value=7.4 Score=42.88 Aligned_cols=271 Identities=18% Similarity=0.187 Sum_probs=145.2
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCc--chhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEY--TPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGM 79 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~--v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~l 79 (343)
+.+++-+.-.-.|+++-+|+.|.=....+-..++++ -..+.|.|.+|+-.++|.=+...-.||..+..++|...+..+
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l 199 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL 199 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence 456788888889999999999988888888888877 467899999999977766666666777888888885322222
Q ss_pred HHhhh-----cC---CchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc-cCChhHH---HHHHHHHhhcccc
Q psy17474 80 FNLIE-----IS---NGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR-NVTGDEF---MQIMDLLAWSRLS 147 (343)
Q Consensus 80 f~qI~-----~~---de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~-dVT~~EF---~l~m~lL~~l~~~ 147 (343)
=.++. .. +|--|--+++++...+-+- - .|+++.+.-.. --|+ -.++... ..+|..+..++.
T Consensus 200 ~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d---~--~ea~~i~~r~~-p~Lqh~n~avvlsavKv~l~~~~~~~~- 272 (734)
T KOG1061|consen 200 NPQLINKLLEALNECTEWGQIFILDCLAEYVPKD---S--REAEDICERLT-PRLQHANSAVVLSAVKVILQLVKYLKQ- 272 (734)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCC---c--hhHHHHHHHhh-hhhccCCcceEeehHHHHHHHHHHHHH-
Confidence 22221 11 2223333344443221111 1 14444333222 2222 2222222 223333332222
Q ss_pred cChHHHHHHHHHHHHHhccCCCCC---CC--Cchhhh-hHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCccc
Q psy17474 148 QSLAGQKELMEIIKHHAELSKSFD---PS--NPEDVD-RSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKD 221 (343)
Q Consensus 148 ~t~~g~qeLv~li~eqa~Ld~~f~---~s--D~e~vd-Rli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~ 221 (343)
..+.+..+.. .++- ++ -..++- |=|..+-+..|. .-..+.-.|||+.-=|..-++
T Consensus 273 --------~~~~~~~K~~--~pl~tlls~~~e~qyvaLrNi~lil~~~p~----~~~~~~~~Ff~kynDPiYvK~----- 333 (734)
T KOG1061|consen 273 --------VNELLFKKVA--PPLVTLLSSESEIQYVALRNINLILQKRPE----ILKVEIKVFFCKYNDPIYVKL----- 333 (734)
T ss_pred --------HHHHHHHHhc--ccceeeecccchhhHHHHhhHHHHHHhChH----HHHhHhHeeeeecCCchhhHH-----
Confidence 2222222211 1110 11 222221 222333333443 233456667776655543332
Q ss_pred ccCCchhhHHHH----------HHHHhhcCCCCCCCCchhhHHHHHHHHHHHHhhhhccchhhhhcCCCcchhHHHHHHH
Q psy17474 222 EAGGLDNQLEAL----------KLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQL 291 (343)
Q Consensus 222 e~~~~~~kl~lL----------K~lAEls~~~~~~e~~pqllesi~d~LL~r~qAik~lp~~c~~~~~~~~~v~diL~Ql 291 (343)
.|++++ ..++|+..|++..| ..++| .|||.+..+..-..+- -+..|+|-++
T Consensus 334 ------eKleil~~la~~~nl~qvl~El~eYatevD-----------~~fvr-kaIraig~~aik~e~~-~~cv~~lLel 394 (734)
T KOG1061|consen 334 ------EKLEILIELANDANLAQVLAELKEYATEVD-----------VDFVR-KAVRAIGRLAIKAEQS-NDCVSILLEL 394 (734)
T ss_pred ------HHHHHHHHHhhHhHHHHHHHHHHHhhhhhC-----------HHHHH-HHHHHhhhhhhhhhhh-hhhHHHHHHH
Confidence 344444 46677777776554 34556 5788888777655444 7789999999
Q ss_pred hhcCCchhHHHHHHHHHHHHhhchhh
Q psy17474 292 LQTNDTTELSVVQSSIMTLCKNDIKV 317 (343)
Q Consensus 292 l~~d~~~e~~~v~~sl~~l~~~d~~~ 317 (343)
+++.-.-=++.+...+--+++.=|..
T Consensus 395 l~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 395 LETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HhhcccceeeehhHHHHhhhhcCCCc
Confidence 99765544444444444444444443
No 34
>KOG2171|consensus
Probab=86.77 E-value=13 Score=42.73 Aligned_cols=133 Identities=11% Similarity=0.156 Sum_probs=94.5
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCC-----cchhhHhHHHHhhcc-CChhHHHHHHHHHHHHHhhChhhh
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNE-----YTPKVTDILGQLLQT-NDTTELSVVQSSIMTLCKNDIKGA 75 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e-----~v~kiaDVL~QLLqt-dd~~E~~~V~~sL~~Llk~Dpk~t 75 (343)
++-++..+-...|.++.||-.|..+++++..|=.- |-.++-..|...|-+ +.+....+.-.+|..++---+|.-
T Consensus 388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~ 467 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI 467 (1075)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH
Confidence 45677888899999999999999999999988443 345666777777764 444555667788999999999999
Q ss_pred HHHHHHhhhc---------CCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHH
Q psy17474 76 LKGMFNLIEI---------SNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQ 136 (343)
Q Consensus 76 L~~lf~qI~~---------~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l 136 (343)
++..++++.+ +...+||.+++=|..-. ..-.+-+.|=- +.+...++++|+..+.+|+..
T Consensus 468 l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA-~AA~~~F~pY~-d~~Mp~L~~~L~n~~~~d~r~ 535 (1075)
T KOG2171|consen 468 LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA-DAAQEKFIPYF-DRLMPLLKNFLQNADDKDLRE 535 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-HHHhhhhHhHH-HHHHHHHHHHHhCCCchhhHH
Confidence 9999988864 34467888877666422 22222222211 123456688888888778866
No 35
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.77 E-value=9.1 Score=40.12 Aligned_cols=248 Identities=21% Similarity=0.240 Sum_probs=130.0
Q ss_pred chhhHhHHHHhhcc-CChhHHH--HHHHHHHHHHhhChhhhHHHHHHhhhcC--CchHHHHHHHHhhHhhhhhhhhhchH
Q psy17474 38 TPKVTDILGQLLQT-NDTTELS--VVQSSIMTLCKNDIKGALKGMFNLIEIS--NGPVREKCLRFLVPKIKMLGRDIMTK 112 (343)
Q Consensus 38 v~kiaDVL~QLLqt-dd~~E~~--~V~~sL~~Llk~Dpk~tL~~lf~qI~~~--de~vRe~~lkFl~~kl~~l~~~ll~~ 112 (343)
+.++++.+...+++ ++..... ..=.-|+.+++.=....|..++.++..+ .+..|.-.+.-+. ..-|+
T Consensus 323 ~~~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~--------~aGT~ 394 (618)
T PF01347_consen 323 LKELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALP--------QAGTN 394 (618)
T ss_dssp --HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHH--------HH-SH
T ss_pred HHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHH--------HcCCH
Confidence 34788888888742 2322222 2345667888888889999999999766 2333333322222 23356
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHHHHHHhhccccc-ChHHHHHHHHHHHHHhccCCCCCCCCchhhh--hHHhhHHhhh
Q psy17474 113 EIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQ-SLAGQKELMEIIKHHAELSKSFDPSNPEDVD--RSIYCSLHCV 189 (343)
Q Consensus 113 E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~-t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vd--Rli~C~~~Al 189 (343)
++=.++.+.|++ +++++.|...+ |.++...- .|+ .++++.+.+-+.... +.+...+. =++.-...+-
T Consensus 395 ~av~~i~~~I~~--~~~~~~ea~~~---l~~l~~~~~~Pt--~e~l~~l~~L~~~~~---~~~~~~l~~ta~L~~~~lv~ 464 (618)
T PF01347_consen 395 PAVKFIKDLIKS--KKLTDDEAAQL---LASLPFHVRRPT--EELLKELFELAKSPK---VKNSPYLRETALLSLGSLVH 464 (618)
T ss_dssp HHHHHHHHHHHT--T-S-HHHHHHH---HHHHHHT-------HHHHHHHHHHHT-HH---HHT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHH---HHHHHhhcCCCC--HHHHHHHHHHHhCcc---ccCChhHHHHHHHHHHHHhC
Confidence 777888888877 78888887654 33333333 444 556665555544331 11111121 1333333444
Q ss_pred hhhccC-----------CCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHH-
Q psy17474 190 PYLCSA-----------IPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIV- 257 (343)
Q Consensus 190 p~fS~~-----------v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~- 257 (343)
.++... .-..+++.|+-+++-...+ . ++.+.++=.||.|.=+-- .+.++.+..-+.
T Consensus 465 ~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~----~~~~~~~~~LkaLgN~g~----~~~i~~l~~~i~~ 532 (618)
T PF01347_consen 465 KYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVS----R----GDEEEKIVYLKALGNLGH----PESIPVLLPYIEG 532 (618)
T ss_dssp HHHTT-----------SS--GGGTHHHHHHHHHHHH----T----T-HHHHHHHHHHHHHHT-----GGGHHHHHTTSTT
T ss_pred ceeecccccccccccchhhHHHHHHHHHHHHHHHhh----c----cCHHHHHHHHHHhhccCC----chhhHHHHhHhhh
Confidence 444442 2235677776665442111 1 122567888888876531 111222222222
Q ss_pred ---HHHHHHHhhhhccchhhhhcCCCcchhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhchhhhhh
Q psy17474 258 ---DCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ-TNDTTELSVVQSSIMTLCKNDIKVLSL 320 (343)
Q Consensus 258 ---d~LL~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~-~d~~~e~~~v~~sl~~l~~~d~~~~~~ 320 (343)
....+|..||..|..+-. .+-.++-++|-+++. ..++.|+-+ -|+..|++.+|....+
T Consensus 533 ~~~~~~~~R~~Ai~Alr~~~~---~~~~~v~~~l~~I~~n~~e~~EvRi--aA~~~lm~~~P~~~~l 594 (618)
T PF01347_consen 533 KEEVPHFIRVAAIQALRRLAK---HCPEKVREILLPIFMNTTEDPEVRI--AAYLILMRCNPSPSVL 594 (618)
T ss_dssp SS-S-HHHHHHHHHTTTTGGG---T-HHHHHHHHHHHHH-TTS-HHHHH--HHHHHHHHT---HHHH
T ss_pred ccccchHHHHHHHHHHHHHhh---cCcHHHHHHHHHHhcCCCCChhHHH--HHHHHHHhcCCCHHHH
Confidence 235699999999998833 223488999988764 466677554 4688899998877655
No 36
>KOG0166|consensus
Probab=85.09 E-value=17 Score=38.69 Aligned_cols=235 Identities=20% Similarity=0.197 Sum_probs=125.7
Q ss_pred hccccchhHHHHHhhhhhhhhhccCCcchhhHh-----HHHHhhccCChhHHHHHHHHHHHHHhhCh--------hhhHH
Q psy17474 11 LCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTELSVVQSSIMTLCKNDI--------KGALK 77 (343)
Q Consensus 11 LcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaD-----VL~QLLqtdd~~E~~~V~~sL~~Llk~Dp--------k~tL~ 77 (343)
|+.++.+.+|..|--.|..+|.++.++...++| +|.|||++.+..=.++.-|||-.+..--| -|.+.
T Consensus 118 l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~ 197 (514)
T KOG0166|consen 118 LSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALD 197 (514)
T ss_pred HccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchH
Confidence 445777899999999999999999999877754 78999999887767777788765443333 34556
Q ss_pred HHHHhhhcCCc--hHHH--HHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHH
Q psy17474 78 GMFNLIEISNG--PVRE--KCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQ 153 (343)
Q Consensus 78 ~lf~qI~~~de--~vRe--~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~ 153 (343)
.+...+...+. .+|. -++.=++..-.|.|+- +...-+..-+.+.+.+... |. +.+..-.+....- |-
T Consensus 198 pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~----~~v~~iLp~L~~ll~~~D~-~V--l~Da~WAlsyLsd--g~ 268 (514)
T KOG0166|consen 198 PLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF----DVVAPILPALLRLLHSTDE-EV--LTDACWALSYLTD--GS 268 (514)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH----HHHHHHHHHHHHHHhcCCH-HH--HHHHHHHHHHHhc--CC
Confidence 66666655554 2331 1222222111111110 2333334444444443211 11 1221111111110 11
Q ss_pred HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCC---CCCCCcccccCCchhhH
Q psy17474 154 KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKL---DQIPETKDEAGGLDNQL 230 (343)
Q Consensus 154 qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l---~~L~~~~~e~~~~~~kl 230 (343)
.+-.+++. |..-+.|++.++.+.-+-.. .|.+ +.|.+ |.|.|.
T Consensus 269 ne~iq~vi------------~~gvv~~LV~lL~~~~~~v~----------------~PaLRaiGNIvt------G~d~QT 314 (514)
T KOG0166|consen 269 NEKIQMVI------------DAGVVPRLVDLLGHSSPKVV----------------TPALRAIGNIVT------GSDEQT 314 (514)
T ss_pred hHHHHHHH------------HccchHHHHHHHcCCCcccc----------------cHHHhhccceee------ccHHHH
Confidence 33333333 22445677777644322111 3432 22333 335555
Q ss_pred HHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHhhhhccchhhhhcCCCcchhHH-----HHHHHhhcCC
Q psy17474 231 EALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTND 296 (343)
Q Consensus 231 ~lLK~lAEls~~~~~~e~~pqllesi~d~LL~r~qAik~lp~~c~~~~~~~~~v~d-----iL~Qll~~d~ 296 (343)
..+- .||.+.-.+.++..-+.. -||+.|-.-+-++|.+|++|+..|.| .|.-+|++.|
T Consensus 315 q~vi-------~~~~L~~l~~ll~~s~~~-~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e 377 (514)
T KOG0166|consen 315 QVVI-------NSGALPVLSNLLSSSPKE-SIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE 377 (514)
T ss_pred HHHH-------hcChHHHHHHHhccCcch-hHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc
Confidence 5432 344333222222211110 18899999999999999999998887 4566777666
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=84.37 E-value=26 Score=36.63 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=83.4
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhhhhccCCcc-----hhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHH
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYT-----PKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGM 79 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v-----~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~l 79 (343)
...+...-..+++.||..|.+.|-.+.+++...+ ..+.-.+.++|..+|..=....-++|..+.+..+. +..+
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~--~~~l 156 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG--LEQL 156 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh--HHHH
Confidence 3444555567888999999999888777665422 33445566777777655566777788887775442 2333
Q ss_pred --------HHhhh-cCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHH---HHHHHhhcccc
Q psy17474 80 --------FNLIE-ISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQ---IMDLLAWSRLS 147 (343)
Q Consensus 80 --------f~qI~-~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l---~m~lL~~l~~~ 147 (343)
+.++. ++++.+|-|++..+. ++....++.+..=.+.= .+.+++..+.++..-. .+++|..+-.
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v-~i~~~S~~~~~~~~~sg---ll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLV-EIASHSPEAAEAVVNSG---LLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHH-HHHhcCHHHHHHHHhcc---HHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 22222 348899999999877 45555444443222222 3344444444444322 4555655544
Q ss_pred cChHHHH
Q psy17474 148 QSLAGQK 154 (343)
Q Consensus 148 ~t~~g~q 154 (343)
++.|.+
T Consensus 232 -~~~g~~ 237 (503)
T PF10508_consen 232 -TPHGLQ 237 (503)
T ss_pred -ChhHHH
Confidence 666643
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.99 E-value=6 Score=44.17 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=54.0
Q ss_pred HHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhhhc
Q psy17474 6 EALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEI 85 (343)
Q Consensus 6 ~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~ 85 (343)
.+++.+-+|++..||..|.+.|..++...+ ...+.|.++|+.+|+.=+...-.+|-.+- ++......+...+..
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~----~~~~~L~~ll~D~d~~VR~aA~~aLg~~g--~~~~~~~~l~~aL~d 818 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA----PAGDAVRALTGDPDPLVRAAALAALAELG--CPPDDVAAATAALRA 818 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc----hhHHHHHHHhcCCCHHHHHHHHHHHHhcC--CcchhHHHHHHHhcC
Confidence 456677888888899999998888877533 23567778888777432333333333221 122222344454545
Q ss_pred CCchHHHHHHHHhh
Q psy17474 86 SNGPVREKCLRFLV 99 (343)
Q Consensus 86 ~de~vRe~~lkFl~ 99 (343)
.+..||..+++-|.
T Consensus 819 ~d~~VR~~Aa~aL~ 832 (897)
T PRK13800 819 SAWQVRQGAARALA 832 (897)
T ss_pred CChHHHHHHHHHHH
Confidence 56678888877775
No 39
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=80.97 E-value=42 Score=31.73 Aligned_cols=69 Identities=23% Similarity=0.174 Sum_probs=42.1
Q ss_pred hccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhhhcCCchH
Q psy17474 11 LCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPV 90 (343)
Q Consensus 11 LcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~~de~v 90 (343)
|.+|+|+.|-|.||...-.+=+-- -+.+ ....+.. -.|.-++-+| ..+++.+.++.+.+
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~-----------~~~i--~~~~~~~-~~W~~~~~lK-------~~Il~~~~~~~~gv 59 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLV-----------FRWI--CVNPSDE-QLWESMNELK-------DRILSLWDSENPGV 59 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHH-----------HHHH--S--HHHH-HHHHHHHHHH-------HHHHHGGGSSSHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHH-----------HHHH--cCCchHH-HHHHHHHHHH-------HHHHHHhcCCCchH
Confidence 678999999999999887776642 2222 2222222 2233333333 34555566777889
Q ss_pred HHHHHHHhhH
Q psy17474 91 REKCLRFLVP 100 (343)
Q Consensus 91 Re~~lkFl~~ 100 (343)
|..++||+..
T Consensus 60 k~~~iKFle~ 69 (239)
T PF11935_consen 60 KLAAIKFLER 69 (239)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 40
>KOG2259|consensus
Probab=80.36 E-value=87 Score=34.87 Aligned_cols=226 Identities=21% Similarity=0.196 Sum_probs=116.8
Q ss_pred HHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhhhcCC
Q psy17474 8 LFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISN 87 (343)
Q Consensus 8 ~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~~d 87 (343)
++-=.|||=-.||++|.-.+-.+.-..|.+-.+--|.|+-+++.|..+ |+ .+.--+|+.+-+||.
T Consensus 378 ~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~----VR--------L~ai~aL~~Is~~l~--- 442 (823)
T KOG2259|consen 378 LVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEV----VR--------LKAIFALTMISVHLA--- 442 (823)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHH----HH--------HHHHHHHHHHHHHhe---
Confidence 344457888899999999999999999999999999999999865421 11 112223344444432
Q ss_pred chHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHHHHHHHHHhccC
Q psy17474 88 GPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELS 167 (343)
Q Consensus 88 e~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld 167 (343)
+||.-+. .+.++|.|-+.+=-+-+-++|+..+. .+ ++.+++......-.
T Consensus 443 --i~eeql~------------------------~il~~L~D~s~dvRe~l~elL~~~~~-~d----~~~i~m~v~~lL~~ 491 (823)
T KOG2259|consen 443 --IREEQLR------------------------QILESLEDRSVDVREALRELLKNARV-SD----LECIDMCVAHLLKN 491 (823)
T ss_pred --ecHHHHH------------------------HHHHHHHhcCHHHHHHHHHHHHhcCC-Cc----HHHHHHHHHHHHHH
Confidence 2222222 22333444333333333333332222 11 22333332222111
Q ss_pred CCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhh---cCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCC
Q psy17474 168 KSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQV---LPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYV 244 (343)
Q Consensus 168 ~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~v---lP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~ 244 (343)
-.+-|+|.+.| ..|+.+. .+.|. .||.-+..++ .|.+....... |.++--.||-++...|+.-|-.
T Consensus 492 L~kyPqDrd~i---~~cm~~i-----GqnH~-~lv~s~m~rfl~kh~~f~t~e~s~-ed~~y~akLilv~nAa~~~p~i- 560 (823)
T KOG2259|consen 492 LGKYPQDRDEI---LRCMGRI-----GQNHR-RLVLSNMGRFLEKHTSFATIEPSL-EDGFYIAKLILVRNAARADPGI- 560 (823)
T ss_pred hhhCCCCcHHH---HHHHHHH-----hccCh-hhHHHHHHHHHHhcccccccCccc-cChhhhhhhhhhhhhhhhCCCe-
Confidence 11336677665 5566442 23333 3444444443 35555543221 2112224788888877764422
Q ss_pred CCCCchhhHHHHHHH--HHHHHhhhhccchhhhhcCCCcchhHHHHHHHh---hcCCchhHHH
Q psy17474 245 VHEDTPQHITSIVDC--LFVRKQAIKDLPSLCKENNEYTPKVTDILGQLL---QTNDTTELSV 302 (343)
Q Consensus 245 ~~e~~pqllesi~d~--LL~r~qAik~lp~~c~~~~~~~~~v~diL~Qll---~~d~~~e~~~ 302 (343)
.--.| ..+.. .+.|.- -|.+|.+-+ .+..|++-|.+ .+|..+|.+.
T Consensus 561 -i~s~P----ea~hrhla~Lr~s----spnLv~~~p---i~~ld~~~q~~ri~ssd~~te~~a 611 (823)
T KOG2259|consen 561 -IVSRP----EAHHRHLAILRCS----SPNLVGDGP---IFFLDILCQFLRIKSSDGETERQA 611 (823)
T ss_pred -eeech----HHHHHHHHHHhcc----CCCCCCccc---hHHHHHHHHHhhhhcccccchhhH
Confidence 11122 22222 224543 788888544 67889998865 4555566554
No 41
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.33 E-value=21 Score=39.09 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=69.7
Q ss_pred hhHHhhHHhhhhhhccCC-CChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHH
Q psy17474 179 DRSIYCSLHCVPYLCSAI-PSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIV 257 (343)
Q Consensus 179 dRli~C~~~Alp~fS~~v-~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~ 257 (343)
||++.++..-.-|.-.+- .+..||.=+..|++..... ..-.-+-+.|..+|-++-..|+++ +.+.+-+.
T Consensus 65 dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~es--------kdk~VR~r~lqila~~~d~v~eID--e~l~N~L~ 134 (885)
T COG5218 65 DRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTES--------KDKKVRKRSLQILALLSDVVREID--EVLANGLL 134 (885)
T ss_pred HHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccC--------cchhHHHHHHHHHHHHHHhcchHH--HHHHHHHH
Confidence 344444444444443333 3377888888888875442 111457788999999988888766 22333333
Q ss_pred HHHH---------HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhH
Q psy17474 258 DCLF---------VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTEL 300 (343)
Q Consensus 258 d~LL---------~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~ 300 (343)
+++. +|++|++-|-.+=-....---+++-+|.-++|-|-+.|+
T Consensus 135 ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDPS~EV 186 (885)
T COG5218 135 EKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQNDPSDEV 186 (885)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcHHHH
Confidence 3332 899999987655433322345777899989998888885
No 42
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=79.82 E-value=21 Score=35.16 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=97.2
Q ss_pred HHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHH------HHHHHhhChhhhHHHHHHhhhcCCchHHH
Q psy17474 19 VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSS------IMTLCKNDIKGALKGMFNLIEISNGPVRE 92 (343)
Q Consensus 19 IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~s------L~~Llk~Dpk~tL~~lf~qI~~~de~vRe 92 (343)
.|-.-|+.|-+++..++-|+| ++-.|..+|++-+..... +.+ +...+|..++..=+.-| -+.+.+
T Consensus 130 lrlh~ir~L~~L~~~t~~fIP-l~~~lleiL~~~~~~~~~--k~~~~kp~d~~~~Lk~~k~~l~t~~~------~d~v~e 200 (299)
T PF03715_consen 130 LRLHCIRSLNRLSQSTGTFIP-LAPYLLEILESSEFNKKP--KKSSMKPLDFECLLKVSKSQLRTRQF------QDGVIE 200 (299)
T ss_pred hHHHHHHHHHHHHHhcCceEe-cHHHHHHHHhChhhcCCC--CCCCCCCcCHHHHhhccHHHhccHHH------HHHHHH
Confidence 588899999999999988876 344444455543211110 000 11222222221111111 134666
Q ss_pred HHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHHHHHHHHHhc------c
Q psy17474 93 KCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAE------L 166 (343)
Q Consensus 93 ~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~------L 166 (343)
.++.-+.+.+......+-=||.--.++..+||.++......|.. .-++|++-++++++ -
T Consensus 201 ~~~~LL~e~la~~s~sIaFPEl~~pii~~LKr~~K~~k~~~~~~---------------~ik~Li~kiee~~~~I~~kR~ 265 (299)
T PF03715_consen 201 EVYELLLEYLAIYSYSIAFPELALPIIVQLKRFLKSCKNAKFKR---------------QIKQLIDKIEENSKFIESKRS 265 (299)
T ss_pred HHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcccHHHHH---------------HHHHHHHHHHHHHHHHHHHHc
Confidence 66777777666666655567888888888888888765555532 12567777777765 3
Q ss_pred CCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHH
Q psy17474 167 SKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCE 207 (343)
Q Consensus 167 d~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~ 207 (343)
.-+|.|.|.+.|+.+.... + ..+|++-.|+..
T Consensus 266 ~v~f~p~d~~~V~~fe~~~--------~-~~~tPl~~~~~~ 297 (299)
T PF03715_consen 266 KVDFSPKDQAQVEAFESEL--------K-WEGTPLGKYYAS 297 (299)
T ss_pred cCCCCCCCHHHHHHHHHhc--------c-cCCCCHHHHHHh
Confidence 3569999999999988876 2 677888888764
No 43
>KOG1058|consensus
Probab=79.65 E-value=11 Score=41.96 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=71.8
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHH---
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGM--- 79 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~l--- 79 (343)
.-+-++.+-.|-.-.-||+.||-++-.+=|.....++-..+.+.-.|.+|. +-.--+||++.|+..||..+|.-+
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~--DpsCkRNAFi~L~~~D~ErAl~Yl~~~ 211 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQ--DPSCKRNAFLMLFTTDPERALNYLLSN 211 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhcc--CchhHHHHHHHHHhcCHHHHHHHHHhh
Confidence 344566677788888899999999999999877779999999988887764 445679999999999997665544
Q ss_pred HHhhhcCCchHHHHHHHHhh
Q psy17474 80 FNLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 80 f~qI~~~de~vRe~~lkFl~ 99 (343)
++||.+=++.+-.-+++||+
T Consensus 212 idqi~~~~~~LqlViVE~Ir 231 (948)
T KOG1058|consen 212 IDQIPSFNDSLQLVIVELIR 231 (948)
T ss_pred HhhccCccHHHHHHHHHHHH
Confidence 44444445666666666665
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=79.63 E-value=4.8 Score=33.25 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=37.3
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCc----chhhHhHHHHhhc
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEY----TPKVTDILGQLLQ 50 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~----v~kiaDVL~QLLq 50 (343)
++-+.-++....|+|..||-.|...|-+++|..++- ...|=|+|..+..
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455677889999999999999999999999975443 3455555565554
No 45
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=79.49 E-value=13 Score=39.05 Aligned_cols=68 Identities=24% Similarity=0.344 Sum_probs=46.6
Q ss_pred HHHHHHHhhcccc---chhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhc-cCChhHHHHHHHHHHHHHhhChhhh
Q psy17474 3 QAIEALFDLCEDE---DVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ-TNDTTELSVVQSSIMTLCKNDIKGA 75 (343)
Q Consensus 3 ~Ai~a~lDLcEDe---D~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq-tdd~~E~~~V~~sL~~Llk~Dpk~t 75 (343)
.+++.+.-+++++ ...||.+||.+|..+.+ .+-.++-++|.+++. ..++.|+++. |+..|++.+|-.+
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~---~~~~~v~~~l~~I~~n~~e~~EvRia--A~~~lm~~~P~~~ 592 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK---HCPEKVREILLPIFMNTTEDPEVRIA--AYLILMRCNPSPS 592 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG---T-HHHHHHHHHHHHH-TTS-HHHHHH--HHHHHHHT---HH
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhh---cCcHHHHHHHHHHhcCCCCChhHHHH--HHHHHHhcCCCHH
Confidence 5677788888888 56889999999998844 334578888888765 6777886654 5778888888643
No 46
>KOG1060|consensus
Probab=78.74 E-value=19 Score=40.35 Aligned_cols=167 Identities=17% Similarity=0.139 Sum_probs=110.2
Q ss_pred HHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhhhc--
Q psy17474 8 LFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEI-- 85 (343)
Q Consensus 8 ~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~-- 85 (343)
+-+..-+.|-.+=..|+++|....+....|.+-.-+-|+|||.+.|..=+..--.++..|+..||+..+.-+|.--..
T Consensus 397 ~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lld 476 (968)
T KOG1060|consen 397 LQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLD 476 (968)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 344555666667788999999999999999999999999999988765555555667789999999886555543221
Q ss_pred --CCchHHHHHHHHhh---HhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHh-hcccccChHH-HHHHHH
Q psy17474 86 --SNGPVREKCLRFLV---PKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLA-WSRLSQSLAG-QKELME 158 (343)
Q Consensus 86 --~de~vRe~~lkFl~---~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~-~l~~~~t~~g-~qeLv~ 158 (343)
.-+..|--+|=.+. +.+..+ .-+.++|..+..+.|+=+.-.++|. +-|+|-+... -+.++.
T Consensus 477 ti~vp~ARA~IiWLige~~e~vpri------------~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~~kll~~ 544 (968)
T KOG1060|consen 477 TILVPAARAGIIWLIGEYCEIVPRI------------APDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQTKLLVQ 544 (968)
T ss_pred hhhhhhhhceeeeeehhhhhhcchh------------chHHHHHHHHhhccccchhhHHHHHhhhhheEechhhHHHHHH
Confidence 12223322222111 122222 2233445555666655555566776 6777755544 488999
Q ss_pred HHHHHhccCCCCCCCCchhhh-hHHhhHH
Q psy17474 159 IIKHHAELSKSFDPSNPEDVD-RSIYCSL 186 (343)
Q Consensus 159 li~eqa~Ld~~f~~sD~e~vd-Rli~C~~ 186 (343)
++.+-+..|.+++.-|..++= .++.|..
T Consensus 545 Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~ 573 (968)
T KOG1060|consen 545 YVFELARYDLSYDIRDRARFLRQLISPLE 573 (968)
T ss_pred HHHHHhccCCCcchhHHHHHHHHHhccHH
Confidence 999999999988877766554 4455544
No 47
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=77.40 E-value=64 Score=30.91 Aligned_cols=77 Identities=26% Similarity=0.315 Sum_probs=51.0
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFN 81 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~ 81 (343)
++|+..+..++.|++..||.+|+..|-.+- -+.-.+.|..+|++|++ ..+-..+...|.+...+..+..++.
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~------~~~a~~~li~~l~~d~~--~~vR~~aa~aL~~~~~~~a~~~l~~ 144 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELG------DPEAVPPLVELLENDEN--EGVRAAAARALGKLGDERALDPLLE 144 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccC------ChhHHHHHHHHHHcCCc--HhHHHHHHHHHHhcCchhhhHHHHH
Confidence 578888999999999999999998665543 24556777778886222 2233455555556666666666666
Q ss_pred hhhcC
Q psy17474 82 LIEIS 86 (343)
Q Consensus 82 qI~~~ 86 (343)
.+...
T Consensus 145 ~l~~~ 149 (335)
T COG1413 145 ALQDE 149 (335)
T ss_pred Hhccc
Confidence 65443
No 48
>KOG1943|consensus
Probab=76.83 E-value=17 Score=41.87 Aligned_cols=85 Identities=22% Similarity=0.268 Sum_probs=50.3
Q ss_pred hhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHH
Q psy17474 176 EDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITS 255 (343)
Q Consensus 176 e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqlles 255 (343)
+++.|.+.-....+|.|-= +.++..-+|+.++-.+-....+ ..+...++.+|-.+--.|.. -.+...+.
T Consensus 732 ~~~r~g~~lal~~lp~~~i---~~~~q~~lc~~~l~~~p~d~~a-------~aR~~~V~al~~v~~~~~~~-~~~~~~~k 800 (1133)
T KOG1943|consen 732 ERIRRGLILALGVLPSELI---HRHLQEKLCKLVLELLPSDAWA-------EARQQNVKALAHVCKTVTSL-LFSESIEK 800 (1133)
T ss_pred HHHHHHHHHHHccCcHHhh---chHHHHHHHHHHhccCcccccH-------HHHHHHHHHHHHHHHHHHHh-hccccHHH
Confidence 4455555555555554422 2456666788777654443222 35667788888877766622 23445555
Q ss_pred HHHHHH-----------------HHHhhhhccc
Q psy17474 256 IVDCLF-----------------VRKQAIKDLP 271 (343)
Q Consensus 256 i~d~LL-----------------~r~qAik~lp 271 (343)
.+++++ +|++|+|.+-
T Consensus 801 ~~e~LL~~lddYttd~rGDVGswVReaAm~al~ 833 (1133)
T KOG1943|consen 801 FRETLLNALDDYTTDSRGDVGSWVREAAMKALS 833 (1133)
T ss_pred HHHHHHHHHhhcccccCccHHHHHHHHHHHHHH
Confidence 555555 9999998753
No 49
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=76.50 E-value=3.9 Score=29.14 Aligned_cols=38 Identities=34% Similarity=0.401 Sum_probs=29.5
Q ss_pred hhHHHHHhhhhhhhhhccCC----cchhhHhHHHHhhccCCh
Q psy17474 17 VSVRKQAIKDLPSLCKENNE----YTPKVTDILGQLLQTNDT 54 (343)
Q Consensus 17 ~~IR~qAIk~Lp~lck~~~e----~v~kiaDVL~QLLqtdd~ 54 (343)
+.||.+|+..|..++...++ +++++...|..+|+++++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~ 42 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD 42 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 36899999999888755544 467888888999977665
No 50
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=76.41 E-value=12 Score=35.87 Aligned_cols=85 Identities=26% Similarity=0.312 Sum_probs=67.8
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFN 81 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~ 81 (343)
..++..+..+++|++..||..|+.+|..++.++ .-+++.+.+.++.++.. +-..++..+-.++.......+..
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~---vr~~~~~~l~~~~~~~~~~~l~~ 251 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLE---VRKAALLALGEIGDEEAVDALAK 251 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHH---HHHHHHHHhcccCcchhHHHHHH
Confidence 467889999999999999999999999999986 66778899888877643 33456667777888888888888
Q ss_pred hhhcCCchHHHH
Q psy17474 82 LIEISNGPVREK 93 (343)
Q Consensus 82 qI~~~de~vRe~ 93 (343)
.+..++..+|.+
T Consensus 252 ~l~~~~~~~~~~ 263 (335)
T COG1413 252 ALEDEDVILALL 263 (335)
T ss_pred HHhccchHHHHH
Confidence 887777665533
No 51
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=75.30 E-value=72 Score=35.15 Aligned_cols=97 Identities=22% Similarity=0.276 Sum_probs=66.8
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFN 81 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~ 81 (343)
++++.++--+--..-+..|-.|+|-|-+++.-.|+.+.---==+. =|.+|+. +..-.-|+-+|||-....+..++.+
T Consensus 302 ~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evE-sLIsd~N--r~IstyAITtLLKTGt~e~idrLv~ 378 (898)
T COG5240 302 DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVE-SLISDEN--RTISTYAITTLLKTGTEETIDRLVN 378 (898)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHH-HHhhccc--ccchHHHHHHHHHcCchhhHHHHHH
Confidence 344445545555555677999999999999988887642211122 2333332 4456678889999999999999999
Q ss_pred hhhc-----CC-------chHHHHHHHHhhHh
Q psy17474 82 LIEI-----SN-------GPVREKCLRFLVPK 101 (343)
Q Consensus 82 qI~~-----~d-------e~vRe~~lkFl~~k 101 (343)
+|.+ +| +.+|..+++|=+.+
T Consensus 379 ~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 379 LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred HHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence 9975 23 36898888887655
No 52
>KOG1058|consensus
Probab=74.77 E-value=25 Score=39.43 Aligned_cols=185 Identities=19% Similarity=0.216 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHhcccCC-hhHHHHHHHHHhhcccccChHHHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhh
Q psy17474 112 KEIEEYTIDQCKKILRNVT-GDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVP 190 (343)
Q Consensus 112 ~E~E~~i~~~ikKvL~dVT-~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp 190 (343)
|.+|..-.+++|+-|+.-+ .+-.+-+..++..+--+.+.+| =++.++.. .-|+....+.|+++-+...+|
T Consensus 15 p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~--Llm~IiRf-------vlps~~~elKKLly~ywE~vP 85 (948)
T KOG1058|consen 15 PDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPS--LLMTIIRF-------VLPSRNHELKKLLYYYWELVP 85 (948)
T ss_pred CcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchH--HHHHHhhe-------eeccCchHHHHHHHHHHHHcc
Confidence 4556666677888887432 2333446666666666666665 44555542 237888899999999999999
Q ss_pred hhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH---------
Q psy17474 191 YLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF--------- 261 (343)
Q Consensus 191 ~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL--------- 261 (343)
-.......-.=.-.+|+.+=--+..=++=. +..-|++| |. +. -|+++++.+-+..
T Consensus 86 Kt~~dgkl~~EMILvcna~RkDLQHPNEyi-----RG~TLRFL---------ck-Lk-E~ELlepl~p~IracleHrhsY 149 (948)
T KOG1058|consen 86 KTDSDGKLLHEMILVCNAYRKDLQHPNEYI-----RGSTLRFL---------CK-LK-EPELLEPLMPSIRACLEHRHSY 149 (948)
T ss_pred ccCCCcccHHHHHHHHHHHhhhccCchHhh-----cchhhhhh---------hh-cC-cHHHhhhhHHHHHHHHhCcchh
Confidence 777766665555567776544333311110 11234444 32 32 2556665544443
Q ss_pred HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhcc
Q psy17474 262 VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSLSLG 323 (343)
Q Consensus 262 ~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~~~~~~~~ 323 (343)
+||+||-.+-++-|.-...+|-..+++.-.|.+|. +-+--+||++.|+..||..-+--||
T Consensus 150 VRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~--DpsCkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 150 VRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQ--DPSCKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred hhhhhheeehhHHhhhhhhcCChHHHHHHHHHhcc--CchhHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999754559999999999888875 4567899999999999977654444
No 53
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=74.13 E-value=4 Score=27.71 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=26.0
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCK 32 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck 32 (343)
++..+++|..++|..||++|...|-.+|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 67889999999999999999999988875
No 54
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=73.25 E-value=27 Score=38.56 Aligned_cols=140 Identities=17% Similarity=0.211 Sum_probs=72.1
Q ss_pred HHHHHHHhhcccccChHHHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccC------CCChhHHHHHHHh
Q psy17474 135 MQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSA------IPSTPFVSYLCEQ 208 (343)
Q Consensus 135 ~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~------v~St~fv~y~~~~ 208 (343)
.++|.+++.+..... +-+.-+++++..-+++-. ..|.+ +-.+.|+-.--=+-..+ .....|+.|+.+.
T Consensus 468 ~lLlKlIRNiS~h~~-~~k~~f~~~i~~L~~~v~---~~~~e--e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~ 541 (708)
T PF05804_consen 468 PLLLKLIRNISQHDG-PLKELFVDFIGDLAKIVS---SGDSE--EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDL 541 (708)
T ss_pred HHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhh---cCCcH--HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHH
Confidence 456777776665542 234456677776555422 22333 34677765432221111 2234555566666
Q ss_pred hcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHH-HHHHHHHHHHhhhhccchhhhhcCCCcchhHHH
Q psy17474 209 VLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHIT-SIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDI 287 (343)
Q Consensus 209 vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqlle-si~d~LL~r~qAik~lp~~c~~~~~~~~~v~di 287 (343)
+.|.. .++|..|+..-.++-+|... +-++-... .++..|. +|-.-..++-|++-.+.-+
T Consensus 542 L~~g~----------~~dDl~LE~Vi~~gtla~d~---~~A~lL~~sgli~~Li-------~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 542 LKPGA----------SEDDLLLEVVILLGTLASDP---ECAPLLAKSGLIPTLI-------ELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred hCCCC----------CChHHHHHHHHHHHHHHCCH---HHHHHHHhCChHHHHH-------HHHHhhCchHHHHHHHHHH
Confidence 55532 23468899888877766431 11222221 1222222 0111123455778888888
Q ss_pred HHHHhhcCCchhH
Q psy17474 288 LGQLLQTNDTTEL 300 (343)
Q Consensus 288 L~Qll~~d~~~e~ 300 (343)
+-|||--++..+.
T Consensus 602 f~~ll~h~~tr~~ 614 (708)
T PF05804_consen 602 FYQLLFHEETREV 614 (708)
T ss_pred HHHHHcChHHHHH
Confidence 8888877766654
No 55
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=73.19 E-value=56 Score=33.18 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=49.6
Q ss_pred hhhhhhhccCCcchhhHhHHHHhhccCCh----------hHHHHHHHHHHHHHhhCh-----------hhhHHHHHHhhh
Q psy17474 26 DLPSLCKENNEYTPKVTDILGQLLQTNDT----------TELSVVQSSIMTLCKNDI-----------KGALKGMFNLIE 84 (343)
Q Consensus 26 ~Lp~lck~~~e~v~kiaDVL~QLLqtdd~----------~E~~~V~~sL~~Llk~Dp-----------k~tL~~lf~qI~ 84 (343)
+||.+-.| +......++.++|..+.| ..+..|+.+....+..-. +.-++++++-+.
T Consensus 71 DLPe~fed---~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~ 147 (370)
T PF08506_consen 71 DLPEFFED---NLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLT 147 (370)
T ss_dssp S--HHHHH---THHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHH---HHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67877754 577888888877775433 225577777776555433 334455554443
Q ss_pred c-C----CchHHHHHHHHhhHhhhhhhhh-hchHHHHHHHHHHHHHh
Q psy17474 85 I-S----NGPVREKCLRFLVPKIKMLGRD-IMTKEIEEYTIDQCKKI 125 (343)
Q Consensus 85 ~-~----de~vRe~~lkFl~~kl~~l~~~-ll~~E~E~~i~~~ikKv 125 (343)
+ + .+.+=..+|+||..-....... ++. .+.++...|.++
T Consensus 148 ~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~--~~~~L~~Iie~V 192 (370)
T PF08506_consen 148 KISQQPKYDILVSKALQFLSSVAESPHHKNLFE--NKPHLQQIIEKV 192 (370)
T ss_dssp C--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT---SHHHHHHHHHHT
T ss_pred HhhhcccccHHHHHHHHHHHHHHcchhHHHHhC--CHHHHHHHHHHh
Confidence 3 2 2245577899998643333222 332 244444444444
No 56
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=72.91 E-value=19 Score=37.12 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=57.9
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLI 83 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI 83 (343)
+++++++.-+|.+..||..+.+.|-.+-. +...+.|..+|.++++.=+..+=.++ .....|| ...+-..+
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------~~a~~~L~~~L~~~~p~vR~aal~al-~~r~~~~---~~~L~~~L 156 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG------RQAEPWLEPLLAASEPPGRAIGLAAL-GAHRHDP---GPALEAAL 156 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc------hHHHHHHHHHhcCCChHHHHHHHHHH-HhhccCh---HHHHHHHh
Confidence 58899999999999999999999976543 56778889999888873221222222 2233344 34444445
Q ss_pred hcCCchHHHHHHHHhh
Q psy17474 84 EISNGPVREKCLRFLV 99 (343)
Q Consensus 84 ~~~de~vRe~~lkFl~ 99 (343)
..++..+|...+.-+.
T Consensus 157 ~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 157 THEDALVRAAALRALG 172 (410)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 4667788988777664
No 57
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=72.62 E-value=12 Score=33.37 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=61.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
.+..-+...++++++-+|+.|+-.+-.+.+. .+...+-+++..++.+++.-=..+|-++|.++.+.||..+..-+=.+
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~~ 197 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQKN 197 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHC
Confidence 4566778889999999999999888888887 77888888988888887776667888999999999997665555443
No 58
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=68.83 E-value=7 Score=28.25 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=23.9
Q ss_pred hHHHHhhccCChhHHHHHHHHHHHHHhhChhh
Q psy17474 43 DILGQLLQTNDTTELSVVQSSIMTLCKNDIKG 74 (343)
Q Consensus 43 DVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~ 74 (343)
-|+.|+|.++++.+....=.++.++|+.+|+.
T Consensus 10 Nvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e 41 (46)
T PF01465_consen 10 NVLLQFLESREPSEREQLLPVIATLLKFSPEE 41 (46)
T ss_dssp HHHHHHHTTSS---HHHHHHHHHHHTT--HHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHCCCHHH
Confidence 37899999999999998889999999999975
No 59
>KOG0212|consensus
Probab=68.57 E-value=74 Score=34.72 Aligned_cols=185 Identities=17% Similarity=0.256 Sum_probs=100.1
Q ss_pred CcchhhHhHHHHhhccCChhHHH-HHHHHHHHHH---hhCh-----hhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhh
Q psy17474 36 EYTPKVTDILGQLLQTNDTTELS-VVQSSIMTLC---KNDI-----KGALKGMFNLIEISNGPVREKCLRFLVPKIKMLG 106 (343)
Q Consensus 36 e~v~kiaDVL~QLLqtdd~~E~~-~V~~sL~~Ll---k~Dp-----k~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~ 106 (343)
.|++-+-|.|-++|. |+..|+. +.+..|-+++ +.+| +...+.+-.|..++++.++.++|+||.+-++-.+
T Consensus 204 ~yl~~~ldGLf~~Ls-D~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLS-DSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred hcchHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 357788888888885 5556666 5555444544 3445 4477888888888999999999999999888777
Q ss_pred hhhchHHHHHHHHHHHHHhcccCChhHHH-----------HHHHHHhhcccccChHHHHHHHHHHHHHhccCCCCCCCCc
Q psy17474 107 RDIMTKEIEEYTIDQCKKILRNVTGDEFM-----------QIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNP 175 (343)
Q Consensus 107 ~~ll~~E~E~~i~~~ikKvL~dVT~~EF~-----------l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~~sD~ 175 (343)
.+++- ++-+.+-++|+..+..|-. ++|.+.++-+..+. -.-..+++.+..+ +. .
T Consensus 283 ~~~l~-----~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~------l~---~ 347 (675)
T KOG0212|consen 283 RDLLL-----YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKY------LS---D 347 (675)
T ss_pred cchhh-----hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHH------hh---c
Confidence 77652 1122222333322222211 12222221111111 1112334444433 11 1
Q ss_pred hhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCC-CCCCCCcccccCCchhhHHHHHHHHhhcCCCC
Q psy17474 176 EDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPK-LDQIPETKDEAGGLDNQLEALKLLAELSPFYV 244 (343)
Q Consensus 176 e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~-l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~ 244 (343)
+.++--|.|+.-..-++++.. ++.+.+. +.++|. +..+.+.. ++.=+..|.++|++|....
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p--~ql~~h~-~~if~tLL~tLsd~s-----d~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAP--GQLLVHN-DSIFLTLLKTLSDRS-----DEVVLLALSLLASICSSSN 409 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCc--chhhhhc-cHHHHHHHHhhcCch-----hHHHHHHHHHHHHHhcCcc
Confidence 345667777777766665532 3333332 233332 33343332 2356677888888876544
No 60
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=68.52 E-value=4.6 Score=28.78 Aligned_cols=29 Identities=38% Similarity=0.426 Sum_probs=24.8
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhh
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSL 30 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~l 30 (343)
.+.+..++++-+|++..||.+|...|-++
T Consensus 27 ~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 27 PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46788899999999999999999988654
No 61
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=67.68 E-value=54 Score=28.93 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=74.9
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
+--+.+++|+-+.|+.|.+.|++.|-..-. .++.+-.|-|..|+... ..+..|.++..-+..++
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L~~Lldd~------~frdeL~~f~~~~~~~~------- 80 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNLENLLDDK------TFRDELTTFNLSDESSV------- 80 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHHHHHcCcc------hHHHHHHhhcccCCcCC-------
Confidence 445778899999999999999999877543 47888888888888643 25555555444433332
Q ss_pred hhcCCc-hHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHh
Q psy17474 83 IEISNG-PVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLA 142 (343)
Q Consensus 83 I~~~de-~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~ 142 (343)
|...+. .+=--++.-|-+|+..-+..--++ ..=+..|...|...+.+|+..|++++-
T Consensus 81 I~~ehR~~l~pvvlRILygk~~~~~~~~~~~---~~rR~aIL~~L~~l~~~El~~Fl~l~~ 138 (141)
T PF07539_consen 81 IEEEHRPELMPVVLRILYGKMQSRKGSGSKK---ASRRAAILRFLAGLSEEELGLFLDLML 138 (141)
T ss_pred CCHHHHhHHHHHHHHHHHHHHhhcCCCCCcc---hHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 221111 222334445555555544443333 223334566678888899988888763
No 62
>KOG1243|consensus
Probab=67.01 E-value=16 Score=40.14 Aligned_cols=131 Identities=15% Similarity=0.194 Sum_probs=81.5
Q ss_pred ccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhC-----hhhhHHHHHHhhhcC----CchHHHHHHHHhhHhhh
Q psy17474 33 ENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKND-----IKGALKGMFNLIEIS----NGPVREKCLRFLVPKIK 103 (343)
Q Consensus 33 ~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~D-----pk~tL~~lf~qI~~~----de~vRe~~lkFl~~kl~ 103 (343)
+.++|..|+.++|+||..+-| .++|-.|.+.+... +.-.-..+|.|+..| ++.+||..++++..-+-
T Consensus 323 d~~eyq~~i~p~l~kLF~~~D----r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 323 DEEEYQVRIIPVLLKLFKSPD----RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cccccccchhhhHHHHhcCcc----hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 346799999999999999877 34666666665443 344566888888876 77899999999998888
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHHHHHHHHHhccCCCCCC
Q psy17474 104 MLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDP 172 (343)
Q Consensus 104 ~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~~ 172 (343)
.|....++.|.-+++... -.|--+.=+--=..+|+....+-+++-|+.++.....+ .+..+|.|
T Consensus 399 kL~~~~Ln~Ellr~~ar~----q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftr-alkdpf~p 462 (690)
T KOG1243|consen 399 KLSKRNLNGELLRYLARL----QPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTR-ALKDPFVP 462 (690)
T ss_pred hhchhhhcHHHHHHHHhh----CccccCcccccceeeecccccccchhhhccccchhhhh-hhcCCCCC
Confidence 888887777776665322 11222211111112233333344444465554444444 45556655
No 63
>KOG1077|consensus
Probab=65.75 E-value=2.4e+02 Score=31.93 Aligned_cols=248 Identities=13% Similarity=0.160 Sum_probs=152.1
Q ss_pred CcchhhHhHHHHhhccCChhHHHHHHH--HHHHHHhhChhhh-HHHHHHhhhc--CCchHH-----HHHHHHhhHhhhhh
Q psy17474 36 EYTPKVTDILGQLLQTNDTTELSVVQS--SIMTLCKNDIKGA-LKGMFNLIEI--SNGPVR-----EKCLRFLVPKIKML 105 (343)
Q Consensus 36 e~v~kiaDVL~QLLqtdd~~E~~~V~~--sL~~Llk~Dpk~t-L~~lf~qI~~--~de~vR-----e~~lkFl~~kl~~l 105 (343)
++....+|=+..||.+.+..-.--=+. +|..|||..|... .+.+++-|.. +|..++ .-+|.||+-+--+-
T Consensus 142 e~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~ 221 (938)
T KOG1077|consen 142 EMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES 221 (938)
T ss_pred hHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence 556666666778898887655432222 4568888888653 3467777765 333233 44566666442221
Q ss_pred hhhhchHHHHHHHHHHHHHhc--ccCChhHH-----------HHHHHHHhhcccccChHHHHHHHHHHHHHhc-cCCCCC
Q psy17474 106 GRDIMTKEIEEYTIDQCKKIL--RNVTGDEF-----------MQIMDLLAWSRLSQSLAGQKELMEIIKHHAE-LSKSFD 171 (343)
Q Consensus 106 ~~~ll~~E~E~~i~~~ikKvL--~dVT~~EF-----------~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~-Ld~~f~ 171 (343)
-..-+.+.+ .+++.+. .+.+-.|. +.++.+|..++--.-++-|.+|.+.+.+-.. .+.+..
T Consensus 222 yk~~~~~av-----s~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~ 296 (938)
T KOG1077|consen 222 YKTCLPLAV-----SRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPK 296 (938)
T ss_pred HhhhHHHHH-----HHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCcc
Confidence 111111211 1122221 12222333 3345555544444444447888888877644 445566
Q ss_pred CCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchh
Q psy17474 172 PSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQ 251 (343)
Q Consensus 172 ~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pq 251 (343)
++++.+..-.=.-+-.|+.+..+--++...+.=-|+++=..+..= |...+-=-|-.++-+++.--.+|....
T Consensus 297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r--------E~NiRYLaLEsm~~L~ss~~s~davK~ 368 (938)
T KOG1077|consen 297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR--------ETNIRYLALESMCKLASSEFSIDAVKK 368 (938)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc--------cccchhhhHHHHHHHHhccchHHHHHH
Confidence 777777765555566677777787777777766666544333321 223455556777777776666788899
Q ss_pred hHHHHHHHHH------HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCch
Q psy17474 252 HITSIVDCLF------VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTT 298 (343)
Q Consensus 252 llesi~d~LL------~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~ 298 (343)
|.+.+|+.|- ||+.|+-=|=.+|-. ++...|.+=|-|-|.|-|.+
T Consensus 369 h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~tAd~s 419 (938)
T KOG1077|consen 369 HQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLETADYS 419 (938)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhhcchH
Confidence 9999999988 899999999999985 56888888888888876653
No 64
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=65.02 E-value=29 Score=33.41 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=62.1
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhc---cCC-hhHHH-HHHHHHHHHHhhCh------h
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ---TND-TTELS-VVQSSIMTLCKNDI------K 73 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq---tdd-~~E~~-~V~~sL~~Llk~Dp------k 73 (343)
+.-+.++-.+.++.||.+|+..|-.++-+ .+...+|-..+.|.+. +.. ..++. +.-+.|..+ ..+. .
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nL-tv~~~~~~~l~ 133 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNL-TVTNDYHHMLA 133 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcc-CCCcchhhhHH
Confidence 44566778888999999999999888665 5677777777777666 221 12322 222333322 1111 3
Q ss_pred hhHHHHHHhhhcCCchHHHHHHHHhhH
Q psy17474 74 GALKGMFNLIEISNGPVREKCLRFLVP 100 (343)
Q Consensus 74 ~tL~~lf~qI~~~de~vRe~~lkFl~~ 100 (343)
..+..+|.-+.+|++.+|..+++.|..
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 467788888888999999999998874
No 65
>KOG0212|consensus
Probab=63.42 E-value=1.1e+02 Score=33.57 Aligned_cols=156 Identities=13% Similarity=0.178 Sum_probs=98.2
Q ss_pred HHHHhhccccchhHHHHHhhhhhhhhhccC-CcchhhHhHHHHhhc-cCCh-----hHHHHH-HHHHHHHHhhChhh---
Q psy17474 6 EALFDLCEDEDVSVRKQAIKDLPSLCKENN-EYTPKVTDILGQLLQ-TNDT-----TELSVV-QSSIMTLCKNDIKG--- 74 (343)
Q Consensus 6 ~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~-e~v~kiaDVL~QLLq-tdd~-----~E~~~V-~~sL~~Llk~Dpk~--- 74 (343)
+-+.+=--..++-|+..|++=|-.|-+--| ..+.-.++||+-+|- ..+. .|..+. ++.|+.++...-++
T Consensus 253 ~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i 332 (675)
T KOG0212|consen 253 NVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEI 332 (675)
T ss_pred hhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 333333345566788888888877776544 457888899988887 2222 334544 44777776554443
Q ss_pred ----hHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccCh
Q psy17474 75 ----ALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSL 150 (343)
Q Consensus 75 ----tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~ 150 (343)
.+.++-.++-...+..|-.+++||..-....|.+++. -+ .-|..-+.|.|.|-+.+=..+-.+++.+.-.-+..
T Consensus 333 d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~-h~-~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 333 DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV-HN-DSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh-hc-cHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 5666666776677899999999999876667766653 12 22344456778886554444456666655444333
Q ss_pred HH-H---HHHHHHHHHH
Q psy17474 151 AG-Q---KELMEIIKHH 163 (343)
Q Consensus 151 ~g-~---qeLv~li~eq 163 (343)
.| + +.|++++.|+
T Consensus 411 ~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 411 PNLRKFLLSLLEMFKED 427 (675)
T ss_pred ccHHHHHHHHHHHHhhh
Confidence 34 3 5677777664
No 66
>KOG1020|consensus
Probab=62.27 E-value=2.7e+02 Score=33.88 Aligned_cols=168 Identities=19% Similarity=0.281 Sum_probs=98.0
Q ss_pred cC-ChhHHHHHHHHHhhcccccChHHH-HHHHHHHHHH--hc----cCCCCCCCCchhhhhHHhhHHhhhhhhccCCCCh
Q psy17474 128 NV-TGDEFMQIMDLLAWSRLSQSLAGQ-KELMEIIKHH--AE----LSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPST 199 (343)
Q Consensus 128 dV-T~~EF~l~m~lL~~l~~~~t~~g~-qeLv~li~eq--a~----Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St 199 (343)
|| |.+.-+.-+++..+++...+...+ +-+..-|... -+ +..+|- |.+...-+..-+-++-|| +
T Consensus 741 d~~s~~~~~~~~~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~--d~~~a~li~~~la~~r~f-------~ 811 (1692)
T KOG1020|consen 741 DVDSNEGTHHWFSFELAYEKVITVENELKYILSKIKDKEKSGRGPKLNSRFA--DDDDAKLIVFYLAHARSF-------S 811 (1692)
T ss_pred CccccccchhHHHHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCCCccc--cchhHHHHHHHHHhhhHH-------H
Confidence 55 333334466666677766666654 3344444332 11 222331 222222233344444444 3
Q ss_pred hHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCC----------------------CC---------
Q psy17474 200 PFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVH----------------------ED--------- 248 (343)
Q Consensus 200 ~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~----------------------e~--------- 248 (343)
.-|..|-++|+-.+++= . ...+..-||-++.+..--..+ |.
T Consensus 812 ~sfD~yLk~Il~~l~e~-~-------ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfv 883 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGEN-A-------IALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFV 883 (1692)
T ss_pred HhhHHHHHHHHHHhcCc-h-------HHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhh
Confidence 55778888888887741 1 146777777777775432211 00
Q ss_pred --chhhHHHHHHHHH---------HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhH---HHHHHHHHHHHhh
Q psy17474 249 --TPQHITSIVDCLF---------VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTEL---SVVQSSIMTLCKN 313 (343)
Q Consensus 249 --~pqllesi~d~LL---------~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~---~~v~~sl~~l~~~ 313 (343)
-|+.+.+.|+.+. |||.|||=+-.+|.++|+ .+++.|+.+-||--=...|- ..|..-+..+|=.
T Consensus 884 l~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-f~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 884 LSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD-FSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred hccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 2334445555554 899999999999998865 57889999999975555555 5566666666643
No 67
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=61.28 E-value=42 Score=29.57 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=60.1
Q ss_pred HHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 6 EALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 6 ~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
..+.....+++.-+|+.|+-.+-...++ ..+...+-+++..++.+++.-=..+|-++|..+.+.||..++.-+-.+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 3566778889998999998888887776 567888899999888877766677899999999999997666555443
No 68
>KOG2259|consensus
Probab=60.36 E-value=19 Score=39.65 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=27.2
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhc
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKE 33 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~ 33 (343)
-|...+.++|.|.|..||.+|+++|-.+..+
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg 228 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEG 228 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhccc
Confidence 4677799999999999999999998887763
No 69
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=57.22 E-value=59 Score=34.04 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=36.3
Q ss_pred hhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhc-cCChhHHHHHHHHHHHHHhhChhh
Q psy17474 17 VSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ-TNDTTELSVVQSSIMTLCKNDIKG 74 (343)
Q Consensus 17 ~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq-tdd~~E~~~V~~sL~~Llk~Dpk~ 74 (343)
..||.+||.+|..+.+.. -.++-++|.+++. ..++.|+++ -|+..+++.+|..
T Consensus 494 ~~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~e~~EvRi--aA~~~lm~t~P~~ 547 (574)
T smart00638 494 TFIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRAEPPEVRM--AAVLVLMETKPSV 547 (574)
T ss_pred HHHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCCH
Confidence 368888888888776643 3466677766655 577777664 3677788887763
No 70
>KOG0166|consensus
Probab=55.11 E-value=63 Score=34.60 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=84.6
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcch-----hhHhHHHHhhccCCh-hHHHHHHHHHHHHHhhC-h----
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTP-----KVTDILGQLLQTNDT-TELSVVQSSIMTLCKND-I---- 72 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~-----kiaDVL~QLLqtdd~-~E~~~V~~sL~~Llk~D-p---- 72 (343)
|.-.++.|.......||-||+=+|..+..|.|.+-. .+.+-|.++++..++ .=+..+.|+|..|.+-- |
T Consensus 153 avp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~ 232 (514)
T KOG0166|consen 153 AVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF 232 (514)
T ss_pred chHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH
Confidence 445577888888999999999999999999888743 455678888888887 55667888888888754 4
Q ss_pred ---hhhHHHHHHhhhcCCchHHH---HHHHHhhHhhhhhhhhhchHHHHHHHHHH
Q psy17474 73 ---KGALKGMFNLIEISNGPVRE---KCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121 (343)
Q Consensus 73 ---k~tL~~lf~qI~~~de~vRe---~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ 121 (343)
+..|.+++..|.+.|+.+.. -++.+|++--...+..++...+=..+++.
T Consensus 233 ~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~l 287 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDL 287 (514)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHH
Confidence 55678888888888887773 34667775555555555544444444433
No 71
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=54.69 E-value=32 Score=28.77 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=35.6
Q ss_pred HHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc-cCChhHHHH
Q psy17474 92 EKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR-NVTGDEFMQ 136 (343)
Q Consensus 92 e~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~-dVT~~EF~l 136 (343)
+||-+|+.. +..+..+.=.+|+.+.+++.|+.++. .++.|||..
T Consensus 3 ~K~k~FL~t-Li~ls~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF~~ 47 (92)
T smart00549 3 SKCKRFLTT-LIQLSNDISQPEVAERVRTLVLGLVNGTITAEEFTS 47 (92)
T ss_pred HHHHHHHHH-HHHHhcCCCcchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 577788874 66666666558999999999999986 999999965
No 72
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=54.56 E-value=1.5e+02 Score=30.75 Aligned_cols=224 Identities=18% Similarity=0.191 Sum_probs=108.6
Q ss_pred Hhhhhhhh-hhccCCcchhhHhHHHHhhc---cCChhHH-HHHHHHHHHHHhhChhhhHH----HHHHhhhcC-----Cc
Q psy17474 23 AIKDLPSL-CKENNEYTPKVTDILGQLLQ---TNDTTEL-SVVQSSIMTLCKNDIKGALK----GMFNLIEIS-----NG 88 (343)
Q Consensus 23 AIk~Lp~l-ck~~~e~v~kiaDVL~QLLq---tdd~~E~-~~V~~sL~~Llk~Dpk~tL~----~lf~qI~~~-----de 88 (343)
+|..+-.+ |+.+|+.++.+-+.|-..++ ..|-.|+ -.|=+=|..++...|.+++. .+|..+.+. ..
T Consensus 95 si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g 174 (435)
T PF03378_consen 95 SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG 174 (435)
T ss_dssp HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC
Confidence 34444444 77788877777777654444 3444553 35666667777777755555 444444432 11
Q ss_pred hHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhccc-C-ChhHHHHHHHHHhhcccccChHHHHHHHHHHHHHhcc
Q psy17474 89 PVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRN-V-TGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAEL 166 (343)
Q Consensus 89 ~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~d-V-T~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~L 166 (343)
.+ --+..+|+.-++.-+..+..+.--+-+...+.|.+.. . ....|+++-.++..++.-.=.+-...++.++..+..-
T Consensus 175 ni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~ 253 (435)
T PF03378_consen 175 NI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQS 253 (435)
T ss_dssp TH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHH
T ss_pred Cc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 12 1122333333333344443333334566777888863 2 3567888888888776521111135677777766432
Q ss_pred CCCCCCCCchhhhhHHhhHHhhhhhh--------ccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHH---HH
Q psy17474 167 SKSFDPSNPEDVDRSIYCSLHCVPYL--------CSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEAL---KL 235 (343)
Q Consensus 167 d~~f~~sD~e~vdRli~C~~~Alp~f--------S~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lL---K~ 235 (343)
.+ -+..+.+++.++-...-.. --++.+.=|...+.+-++|..++++.. .|+|+-.+ |.
T Consensus 254 sk-----T~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~------~erKi~~vGltkL 322 (435)
T PF03378_consen 254 SK-----TEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP------IERKICAVGLTKL 322 (435)
T ss_dssp C-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH------HHHHHHHHHHHHH
T ss_pred CC-----cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc------chhhHHHHHHHHH
Confidence 22 2344445444422221111 125566667777777789998888643 26776654 55
Q ss_pred HHhhcCCCCCCCCchhhHHHHHHHHH
Q psy17474 236 LAELSPFYVVHEDTPQHITSIVDCLF 261 (343)
Q Consensus 236 lAEls~~~~~~e~~pqllesi~d~LL 261 (343)
++|...+.+. ..+....+.++++
T Consensus 323 L~es~~~~~~---~~~~w~~ll~~Ll 345 (435)
T PF03378_consen 323 LCESPAFLSE---YSQLWPPLLEALL 345 (435)
T ss_dssp HHSSTTHHHH----CHHHHHHHHHHH
T ss_pred HhccHhhhhH---HHHHHHHHHHHHH
Confidence 6553333222 2455555555554
No 73
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=54.10 E-value=1.3e+02 Score=27.08 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=50.0
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhh-HhHHHHhhccCChhHHHHHHHHHHHHHhhCh
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKV-TDILGQLLQTNDTTELSVVQSSIMTLCKNDI 72 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~ki-aDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp 72 (343)
+.-+..+++.+-|.-..||..|...|-.+|+..+ +.+++ ..++.+..+.-.+.=+..+-+-|...+..-+
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 4557788999999988999999999999999865 66788 8999999988888777777777777766666
No 74
>KOG1240|consensus
Probab=53.94 E-value=1.8e+02 Score=34.49 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=65.3
Q ss_pred CCchHHHHHHHHhhHhhhhhhhhhchH-----------HHHHHHHHHHHHhcccCChhHHHHH-----HHHHhhcccccC
Q psy17474 86 SNGPVREKCLRFLVPKIKMLGRDIMTK-----------EIEEYTIDQCKKILRNVTGDEFMQI-----MDLLAWSRLSQS 149 (343)
Q Consensus 86 ~de~vRe~~lkFl~~kl~~l~~~ll~~-----------E~E~~i~~~ikKvL~dVT~~EF~l~-----m~lL~~l~~~~t 149 (343)
.++.+=..+++||.+|=..|....+.+ -+++++.=.+...|.| ++||++. +.+|=.+..++.
T Consensus 614 sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD--~EE~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 614 SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTD--GEEAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccC--cchhhHHHHHHHHHHHHHhcccch
Confidence 567777889999999977777776654 4799999998888888 7888763 222323333321
Q ss_pred ---------hHH---------HHHHHHHHHHHhc-------------cCCCCCCCCchhhh---hHHhhHHhh
Q psy17474 150 ---------LAG---------QKELMEIIKHHAE-------------LSKSFDPSNPEDVD---RSIYCSLHC 188 (343)
Q Consensus 150 ---------~~g---------~qeLv~li~eqa~-------------Ld~~f~~sD~e~vd---Rli~C~~~A 188 (343)
+.. |+..+.+|.+-+. +-++|--.++..+. .+++|+..-
T Consensus 692 ~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~i~s~~~LlsclkpP 764 (1431)
T KOG1240|consen 692 PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPP 764 (1431)
T ss_pred HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccHhhhcchHHHHHHhcCC
Confidence 111 6777888877654 22444444444444 468888543
No 75
>KOG1824|consensus
Probab=53.02 E-value=2.4e+02 Score=32.94 Aligned_cols=226 Identities=20% Similarity=0.270 Sum_probs=125.1
Q ss_pred HHHhhhcCCchHHHHHHHHhhHhhhhhhhhhc--hHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHH
Q psy17474 79 MFNLIEISNGPVREKCLRFLVPKIKMLGRDIM--TKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKEL 156 (343)
Q Consensus 79 lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll--~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeL 156 (343)
+.....++|-..|--+.+=|... +..+.+ .-|.|.-++.-+.|.|.|.+|+==.+-...|+-+- +.-+..++
T Consensus 10 LlekmtssDKDfRfMAtsDLm~e---Lqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lv---sKvke~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTE---LQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLV---SKVKEDQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHH---HHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHH---hhchHHHH
Confidence 33444445556664444333333 333322 23888889999999999999965444333333222 33334455
Q ss_pred HHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChh-HHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHH
Q psy17474 157 MEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTP-FVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKL 235 (343)
Q Consensus 157 v~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~-fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~ 235 (343)
..++.+-.. .. -++.|..+-+-+=...+. .-.-..+|++ +-.-+|..++|++..-...- | +-...|.+.|-.
T Consensus 84 e~~ve~L~~---~~-~s~keq~rdissi~Lktv-i~nl~P~~~~~la~tV~~~~t~~l~~~i~~q-e-~~sai~~e~lDi 156 (1233)
T KOG1824|consen 84 ETIVENLCS---NM-LSGKEQLRDISSIGLKTV-IANLPPSSSSFLAATVCKRITPKLKQAISKQ-E-DVSAIKCEVLDI 156 (1233)
T ss_pred HHHHHHHhh---hh-ccchhhhccHHHHHHHHH-HhcCCCccccccccHHHHHHHHHHHHHhhhc-c-cchhhHHHHHHH
Confidence 555554321 10 123333322211111110 0000112222 23346777888765543321 0 111379999999
Q ss_pred HHhhcCCCCCCCCchhhHHHHHHHHH---------HHHhhhhccchhhhhcCC--CcchhHHHHHHHhhcCCchhHHHHH
Q psy17474 236 LAELSPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDLPSLCKENNE--YTPKVTDILGQLLQTNDTTELSVVQ 304 (343)
Q Consensus 236 lAEls~~~~~~e~~pqllesi~d~LL---------~r~qAik~lp~~c~~~~~--~~~~v~diL~Qll~~d~~~e~~~v~ 304 (343)
+|++-+-.|++- |+.-..+-.+++ |||.||-.|-.+..--+. |..-|-+.|.-|=+...+++...--
T Consensus 157 l~d~lsr~g~ll--~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~I 234 (1233)
T KOG1824|consen 157 LADVLSRFGTLL--PNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYI 234 (1233)
T ss_pred HHHHHHhhcccC--cchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 999999999874 556667777777 899988776665543333 3333444455666777788888888
Q ss_pred HHHHHHHhhchhhhh
Q psy17474 305 SSIMTLCKNDIKVLS 319 (343)
Q Consensus 305 ~sl~~l~~~d~~~~~ 319 (343)
++|.++..+-.+...
T Consensus 235 q~l~~i~r~ag~r~~ 249 (1233)
T KOG1824|consen 235 QCLAAICRQAGHRFG 249 (1233)
T ss_pred HHHHHHHHHhcchhh
Confidence 888888776554443
No 76
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=52.98 E-value=92 Score=28.77 Aligned_cols=76 Identities=12% Similarity=0.013 Sum_probs=48.5
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
...+..++.+++.=.|+.||-..-.+.++ .....+-.+...++.+++.==..+|-++|-+.-|-||..+..=+=.|
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~--~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~ 192 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEK--TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVAAH 192 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 45677888888887788887665555554 22345555555556555444455777888888888886554444333
No 77
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=52.51 E-value=3e+02 Score=28.84 Aligned_cols=249 Identities=15% Similarity=0.160 Sum_probs=122.8
Q ss_pred CcchhhHhHHHHhhcc-CChh--HHHHHHHHHHHHHhhChhhhHHHHHHhhhcCC-chHHHHHHHHhhHhhhhhhhhhch
Q psy17474 36 EYTPKVTDILGQLLQT-NDTT--ELSVVQSSIMTLCKNDIKGALKGMFNLIEISN-GPVREKCLRFLVPKIKMLGRDIMT 111 (343)
Q Consensus 36 e~v~kiaDVL~QLLqt-dd~~--E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~~d-e~vRe~~lkFl~~kl~~l~~~ll~ 111 (343)
+-...+..+|.+|.+. .+.. +...-=.-|+++++.=+...|..++.++.. . ...|.-.+.-+. ..-+
T Consensus 285 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~--------~~GT 355 (574)
T smart00638 285 SNEVQIVEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVA--------QAGT 355 (574)
T ss_pred CchhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHH--------hcCC
Confidence 3445555555555542 1111 133334456778888888888888888764 3 223322222221 2335
Q ss_pred HHHHHHHHHHHHHhcccCChhHHHH-HHHHHhhcccccChHHHHHHHHHHHHHhccCCCCCCCCchhhhh--HHhhHHhh
Q psy17474 112 KEIEEYTIDQCKKILRNVTGDEFMQ-IMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDR--SIYCSLHC 188 (343)
Q Consensus 112 ~E~E~~i~~~ikKvL~dVT~~EF~l-~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vdR--li~C~~~A 188 (343)
+++=.++.+.|++ .++++.|... ++.++.. ...|+ .++++.+.+-+..+..- ....+.. ++.-..++
T Consensus 356 ~~a~~~i~~~i~~--~~~~~~ea~~~~~~~~~~---~~~Pt--~~~l~~l~~l~~~~~~~---~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 356 PPALKFIKQWIKN--KKITPLEAAQLLAVLPHT---ARYPT--EEILKALFELAESPEVQ---KQPYLRESALLAYGSLV 425 (574)
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHh---hhcCC--HHHHHHHHHHhcCcccc---ccHHHHHHHHHHHHHHH
Confidence 5666677666654 4677766433 3333331 13333 45555555554444221 1112211 22222223
Q ss_pred hhhhccCCCC-----hhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHH-----H
Q psy17474 189 VPYLCSAIPS-----TPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIV-----D 258 (343)
Q Consensus 189 lp~fS~~v~S-----t~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~-----d 258 (343)
-.++....+. ..|+.|+-+++-...+. ++.+.++=.||.|.= .|... +-..+.... .
T Consensus 426 ~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~~~~~~~LkaLGN----~g~~~-~i~~l~~~l~~~~~~ 492 (574)
T smart00638 426 RRYCVNTPSCPDFVLEELLKYLHELLQQAVSK--------GDEEEIQLYLKALGN----AGHPS-SIKVLEPYLEGAEPL 492 (574)
T ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc--------CCchheeeHHHhhhc----cCChh-HHHHHHHhcCCCCCC
Confidence 2233332221 35666665544221111 111344555666552 12111 111111110 1
Q ss_pred HHHHHHhhhhccchhhhhcCCCcchhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhchhhhhhh
Q psy17474 259 CLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ-TNDTTELSVVQSSIMTLCKNDIKVLSLS 321 (343)
Q Consensus 259 ~LL~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~-~d~~~e~~~v~~sl~~l~~~d~~~~~~~ 321 (343)
...+|.+||..|..+-+ .+-.++-++|-+++. ..++.|+-+ -|+..|++.+|....+.
T Consensus 493 ~~~iR~~Av~Alr~~a~---~~p~~v~~~l~~i~~n~~e~~EvRi--aA~~~lm~t~P~~~~l~ 551 (574)
T smart00638 493 STFIRLAAILALRNLAK---RDPRKVQEVLLPIYLNRAEPPEVRM--AAVLVLMETKPSVALLQ 551 (574)
T ss_pred CHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCCHHHHH
Confidence 23589999999997765 334577888877663 466666544 47888999988776543
No 78
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=52.17 E-value=14 Score=23.99 Aligned_cols=28 Identities=36% Similarity=0.433 Sum_probs=19.4
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLC 31 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lc 31 (343)
+|..++.|...+|..|+.+|+..|-.+|
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666777777777777777777766655
No 79
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=50.78 E-value=49 Score=26.40 Aligned_cols=36 Identities=28% Similarity=0.214 Sum_probs=28.2
Q ss_pred hchHHHHHHHHHHHHHhcc---cCChhHHHHHHHHHhhc
Q psy17474 109 IMTKEIEEYTIDQCKKILR---NVTGDEFMQIMDLLAWS 144 (343)
Q Consensus 109 ll~~E~E~~i~~~ikKvL~---dVT~~EF~l~m~lL~~l 144 (343)
-...|+|..+...+.+.+. =||.+||+....+|..+
T Consensus 24 ~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~ 62 (79)
T PF04380_consen 24 GPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLART 62 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Confidence 3345888888888888875 57999999988888744
No 80
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=50.23 E-value=23 Score=25.57 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=25.4
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhh
Q psy17474 286 DILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLS 319 (343)
Q Consensus 286 diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~~~~ 319 (343)
-|+-|.|.++++.+....=.++.++++++|...-
T Consensus 10 Nvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~ 43 (46)
T PF01465_consen 10 NVLLQFLESREPSEREQLLPVIATLLKFSPEEKQ 43 (46)
T ss_dssp HHHHHHHTTSS---HHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHH
Confidence 4789999999999999888999999999998753
No 81
>KOG4500|consensus
Probab=48.91 E-value=2.6e+02 Score=30.08 Aligned_cols=183 Identities=19% Similarity=0.200 Sum_probs=99.8
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhh---------HhHHHHhhccCCh--hHHHHHHHHHHHHHhhC
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKV---------TDILGQLLQTNDT--TELSVVQSSIMTLCKND 71 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~ki---------aDVL~QLLqtdd~--~E~~~V~~sL~~Llk~D 71 (343)
.+++.+-.+--.+|..|-.|--|+|..+|-+|.|.-+.+ .|+|--+=.-|+| .|+..|.-.+..=+-.|
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 466777777777888999999999999999999985543 6666655555665 56777776666555555
Q ss_pred hhh------------hHHHHHHhhhcCCchHHHHH-------HHHhhHhhhhhhh---------hhchHHHHHHHHHHHH
Q psy17474 72 IKG------------ALKGMFNLIEISNGPVREKC-------LRFLVPKIKMLGR---------DIMTKEIEEYTIDQCK 123 (343)
Q Consensus 72 pk~------------tL~~lf~qI~~~de~vRe~~-------lkFl~~kl~~l~~---------~ll~~E~E~~i~~~ik 123 (343)
..+ ||.+++. |.-.+-...|++ +.|.++-+.+.-. .++.+-+++=+.+-|.
T Consensus 167 ~~~l~aq~~~~gVl~tL~~~~~-I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 167 SRELRAQVADAGVLNTLAITYW-IDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred cHHHHHHHHhcccHHHHHHHhh-cccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 422 1212111 100122233333 4566664443221 1222222322333333
Q ss_pred HhcccC--------Chh---HHHHHHHHHhhcccccChHHHHHHHHHHHHHhccCCCCC------CCCchhhhhHHhhHH
Q psy17474 124 KILRNV--------TGD---EFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFD------PSNPEDVDRSIYCSL 186 (343)
Q Consensus 124 KvL~dV--------T~~---EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~------~sD~e~vdRli~C~~ 186 (343)
.++... +=. =.+-..++++.+|-+...+..-.++..+.|..=|--.-| -.||.-++++.+|++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 333211 000 112356777777777776666666666665533211101 246667777777764
No 82
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=48.83 E-value=72 Score=31.70 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=46.8
Q ss_pred HHHHHhhhhhhhhhccCCcchhhHhHHHHhhcc---CChhHHHHHHHHHHHHHhhChhhhHHHHHHhhhcCCc----hHH
Q psy17474 19 VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQT---NDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNG----PVR 91 (343)
Q Consensus 19 IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqt---dd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~~de----~vR 91 (343)
.|..-+..+..+-.=+|+.+..|.++|.+.+.. ....+..-+ +.+..++..=++++-..++..|...|+ .+|
T Consensus 160 ~~~~v~~ria~l~~v~~~~~~~i~~~L~~~l~~~~~~~~~~~~g~-~~~a~Iln~~~~~~~~~il~~L~~~d~~~a~~Ir 238 (339)
T PRK05686 160 LRADVMMRIATLEGVSPEALKEVEEVLEKKLSSMANADRTKMGGV-KTVAEILNNLDRQTEKTILESLEEEDPELAEKIK 238 (339)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhhcccccccccCcH-HHHHHHHhcCCchHHHHHHHHHHhhCHHHHHHHH
Confidence 455555555556655667777777777777653 122233322 335566766677777777777766544 466
Q ss_pred HHHHHH
Q psy17474 92 EKCLRF 97 (343)
Q Consensus 92 e~~lkF 97 (343)
++.+.|
T Consensus 239 ~~mF~F 244 (339)
T PRK05686 239 DLMFVF 244 (339)
T ss_pred HHhcCH
Confidence 666655
No 83
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=45.13 E-value=55 Score=26.94 Aligned_cols=36 Identities=8% Similarity=0.234 Sum_probs=32.0
Q ss_pred HHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCCh
Q psy17474 19 VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDT 54 (343)
Q Consensus 19 IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~ 54 (343)
.-+..|+.+-.+|-++.++-+.|++++.+-+....+
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~ 46 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPP 46 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 457889999999999999999999999998887665
No 84
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=43.78 E-value=3.4e+02 Score=28.03 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=54.5
Q ss_pred hhhHhHHHHhhccCChhH------HHHHHHHHHHHHhhChh-------------hhHHHHHHhhhcC-CchHHHHHHHHh
Q psy17474 39 PKVTDILGQLLQTNDTTE------LSVVQSSIMTLCKNDIK-------------GALKGMFNLIEIS-NGPVREKCLRFL 98 (343)
Q Consensus 39 ~kiaDVL~QLLqtdd~~E------~~~V~~sL~~Llk~Dpk-------------~tL~~lf~qI~~~-de~vRe~~lkFl 98 (343)
.+|=+.+.+|.+.+++.- ...+-++....++.+|+ +....+|.++... ...-|++++.||
T Consensus 144 ~~le~al~~Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR~lYR~Fl~~d~~~~~iY~~Wieeyg~~~R~~il~Fl 223 (372)
T PRK15338 144 KKLESLLKHVEEETDPKTLKAGINCALKARLFGKALSLKPGLLRASYRQFLQSESHEVEIYSDWIASYGYQRRLVVLDFI 223 (372)
T ss_pred HHHHHHHHHHHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHHHHHHHHHhccCcHHHHHHHHHHHhCccHHHHHHHHH
Confidence 344466666666666522 22344444455555552 2223333333322 223467777776
Q ss_pred hHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHH
Q psy17474 99 VPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAG 152 (343)
Q Consensus 99 ~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g 152 (343)
...+ ..-++..-.++...||-.+++=|+.++..+|.-.
T Consensus 224 ~~AL----------------~~DlqS~~Ps~~~~EFG~l~~~l~~LR~L~Sad~ 261 (372)
T PRK15338 224 EGSL----------------LTDIDANDASCSRLEFGQLLRRLTQLKMLRSADL 261 (372)
T ss_pred HHHH----------------HhHHhcCCCCCCHHHHHHHHHHHHHHHHHHhhHH
Confidence 6432 1222333447788999999999998888888775
No 85
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=41.29 E-value=4.1e+02 Score=27.18 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=20.2
Q ss_pred hhHhHHHHhhccCChhHHHHHHHHHHHHHhh
Q psy17474 40 KVTDILGQLLQTNDTTELSVVQSSIMTLCKN 70 (343)
Q Consensus 40 kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~ 70 (343)
+..==|..++.|+|+.|++.++.-|..++.-
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k 163 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGK 163 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4444456667777777777777777666654
No 86
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=39.59 E-value=5.9e+02 Score=28.53 Aligned_cols=210 Identities=17% Similarity=0.178 Sum_probs=128.0
Q ss_pred ccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhhh---------
Q psy17474 14 DEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIE--------- 84 (343)
Q Consensus 14 DeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~--------- 84 (343)
+.|...|++++=.|=+++-=.|-..+-++-.+++.|.-|--..+..-+.=...+++-++. ++..+-.|+.
T Consensus 40 ~~~~~~~~atVPFlLqla~~S~~LL~~it~~~v~~l~~~~~~~L~~~~~~~~~~~~~~~e-~l~~L~vhLi~~~~~G~~~ 118 (696)
T PF14838_consen 40 EGDKQQKKATVPFLLQLASMSPTLLKAITNDLVDILKPDVIPRLNQLAQDWNKYFREELE-NLIDLVVHLILQCEQGAAR 118 (696)
T ss_pred CCChhhhhhhhHHHHHHHhhcHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHhccccHHH
Confidence 345578999999999999988888888888888888755421222222112223332221 2222222221
Q ss_pred ----------cC----------CchHHHHHHHHhhHhhhhhhhhhchH-----------HHHHHHHHHHHHhcccCChhH
Q psy17474 85 ----------IS----------NGPVREKCLRFLVPKIKMLGRDIMTK-----------EIEEYTIDQCKKILRNVTGDE 133 (343)
Q Consensus 85 ----------~~----------de~vRe~~lkFl~~kl~~l~~~ll~~-----------E~E~~i~~~ikKvL~dVT~~E 133 (343)
.. .+.||+.|-+++..-+-.+.+-+++. |.+..+.+.++..|.. .+.+
T Consensus 119 ll~~Lldta~~~s~~~~~~~~~~~~V~~~C~~iL~~ll~~Lq~lv~~~~~~~~~ipfL~~l~~~~~~Lc~~lL~~-n~~r 197 (696)
T PF14838_consen 119 LLQFLLDTASPASVIDTGGLNAHQAVREACDRILQLLLQDLQKLVRNRGPQPRNIPFLEELKAHITELCKELLSL-NRKR 197 (696)
T ss_pred HHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHHHHHHHhcc-chHH
Confidence 11 14688899888888888887777743 8888888888777765 6778
Q ss_pred HHHHHHHHhhcccccChHHHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCC-
Q psy17474 134 FMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPK- 212 (343)
Q Consensus 134 F~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~- 212 (343)
+.-.-.+|.-+. ++.|+..-+.+-.+..+ +.+++++.=+++=...-.+ ..-...+.++.-.-++.+-.
T Consensus 198 ~~w~~rLL~lL~-~~~Psi~~~~~~~lL~~--------A~~~~~l~lli~L~~~~~~--~~~~~~~~l~~~vle~~l~~i 266 (696)
T PF14838_consen 198 QQWAHRLLCLLS-SQHPSIAIEAISYLLTK--------AQNPEHLALLIRLYAGLSV--VNFPSLPGLFPAVLEQCLRQI 266 (696)
T ss_pred HHHHHHHHHHHh-cCCCchHHHHHHHHHHh--------cCCHHHHHHHHHHHhcccC--CccccccchHHHHHHHHHHHH
Confidence 888888888888 89888876655555544 6677777655554432222 11112233433333333322
Q ss_pred -CCCCCCcccccCCchhhHHHHHHHHhhcCCCC
Q psy17474 213 -LDQIPETKDEAGGLDNQLEALKLLAELSPFYV 244 (343)
Q Consensus 213 -l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~ 244 (343)
-+.++. ..=..+|+.++.++.+=.
T Consensus 267 ~~~~lt~--------~e~~qLl~NL~~L~k~ek 291 (696)
T PF14838_consen 267 HTNTLTP--------TEATQLLQNLALLAKWEK 291 (696)
T ss_pred hcCCCCc--------HHHHHHHHHHHHHHHHhh
Confidence 233322 234678999999988543
No 87
>KOG1059|consensus
Probab=39.56 E-value=90 Score=35.02 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=43.6
Q ss_pred HHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChh
Q psy17474 7 ALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTT 55 (343)
Q Consensus 7 a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~ 55 (343)
.+=-+|||.|++.|--|.=++..+.|-+|..|.+.-|+..++|-..|..
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~S 351 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDES 351 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCch
Confidence 3445799999999999999999999999999999999999999966543
No 88
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=38.82 E-value=1.1e+02 Score=25.96 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=48.5
Q ss_pred cc-chhHHHHHhhhhhhhhhccCCc---chhhHhHHHHhhc-cCChhH----HHHHHHHHHHHHhhChhhhHHHHHHhhh
Q psy17474 14 DE-DVSVRKQAIKDLPSLCKENNEY---TPKVTDILGQLLQ-TNDTTE----LSVVQSSIMTLCKNDIKGALKGMFNLIE 84 (343)
Q Consensus 14 De-D~~IR~qAIk~Lp~lck~~~e~---v~kiaDVL~QLLq-tdd~~E----~~~V~~sL~~Llk~Dpk~tL~~lf~qI~ 84 (343)
++ |......|++..|.+-+.++.| +..+|.=|.+.|- -+|.-+ -..-++||+++.-..|+-.-..++++.-
T Consensus 15 ~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~~~~~L~~~f~ 94 (114)
T PF10193_consen 15 DDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEKVAPYLTEEFF 94 (114)
T ss_dssp -----S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGGHHH-HHHHHT
T ss_pred CcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 44 6777789999999999999884 4444444444333 222211 2356899999999999888888888888
Q ss_pred cCCchHHHH--HHHHh
Q psy17474 85 ISNGPVREK--CLRFL 98 (343)
Q Consensus 85 ~~de~vRe~--~lkFl 98 (343)
+++=.+..| +|.=|
T Consensus 95 ~~~~Sl~qR~~iL~~l 110 (114)
T PF10193_consen 95 SGDYSLQQRMSILSAL 110 (114)
T ss_dssp TS---THHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 776654444 35443
No 89
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=38.48 E-value=81 Score=30.58 Aligned_cols=47 Identities=36% Similarity=0.393 Sum_probs=36.1
Q ss_pred HHHHHhhccccch--hHHHHHhhhhhhhhhccCCcchhhHhHHHHhhcc
Q psy17474 5 IEALFDLCEDEDV--SVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQT 51 (343)
Q Consensus 5 i~a~lDLcEDeD~--~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqt 51 (343)
++.+.++++|++. =||..|+++|..+....|..-..+...+.++++.
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5667778888777 4788888888888888887777777777777753
No 90
>KOG2956|consensus
Probab=37.50 E-value=3.7e+02 Score=28.88 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=56.1
Q ss_pred HHHHHhhccc-cchhHHHHHhhhhhhhhhccCCcchhhHhHH-HHhh----ccCChhHHHHHHHHHHHHHhhChhhhHHH
Q psy17474 5 IEALFDLCED-EDVSVRKQAIKDLPSLCKENNEYTPKVTDIL-GQLL----QTNDTTELSVVQSSIMTLCKNDIKGALKG 78 (343)
Q Consensus 5 i~a~lDLcED-eD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL-~QLL----qtdd~~E~~~V~~sL~~Llk~Dpk~tL~~ 78 (343)
+..+++.-.| +|..+|+-|.|-|-..|+.+|.-..-=+-+- .-.| .+.+.+=..+..-++..+-..+|-.-+..
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~ 410 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN 410 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH
Confidence 3456666667 8899999999999999999876532222111 1122 23333334445555556666666666666
Q ss_pred HHHhhhcCCchHHHHHHHHhh
Q psy17474 79 MFNLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 79 lf~qI~~~de~vRe~~lkFl~ 99 (343)
+.--|.+.|+..---+||.+.
T Consensus 411 i~~~Ilt~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 411 ISPLILTADEPRAVAVIKMLT 431 (516)
T ss_pred HhhHHhcCcchHHHHHHHHHH
Confidence 666666555554444444433
No 91
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=35.79 E-value=2e+02 Score=27.80 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=31.6
Q ss_pred hcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccC
Q psy17474 84 EISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNV 129 (343)
Q Consensus 84 ~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dV 129 (343)
-++|+.+|.|.+.||+.=+..++++.++++-=+++.+-...-|.|.
T Consensus 9 tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~ 54 (262)
T PF14500_consen 9 TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH 54 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH
Confidence 3567789999999999999999988887633344444444444553
No 92
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=35.53 E-value=53 Score=27.66 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=33.9
Q ss_pred HHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc-cCChhHHHH
Q psy17474 92 EKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR-NVTGDEFMQ 136 (343)
Q Consensus 92 e~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~-dVT~~EF~l 136 (343)
.||-+||.. +..+..+-..+|+-+-+.+.+...+. .++.+||..
T Consensus 4 ~Kck~FL~t-Li~las~~~spev~~~Vr~LV~~L~~~~i~~EeF~~ 48 (96)
T PF07531_consen 4 KKCKNFLNT-LIQLASDKQSPEVGENVRELVQNLVDGKIEAEEFTS 48 (96)
T ss_dssp HHHHHHHHH-HHHHHCCSC-CCHHHHHHHHHHHHHTTSS-HHHHHH
T ss_pred HHHHHHHHH-HHHHhcCCCChHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 467788874 66677675677999999999999986 899999955
No 93
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=35.37 E-value=92 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=15.1
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhhhhc
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKE 33 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~lck~ 33 (343)
|-.++.|-...+..+|.|++|-|..++.+
T Consensus 136 i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 136 IPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 34444555555555555555555555543
No 94
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=35.09 E-value=3.2e+02 Score=26.28 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=43.7
Q ss_pred HHHhhccccchhHHHHHhhhhhhhhhccCCcc----------hhhHhHHHHhhc-----cCChhHH---HHHHHHHHHHH
Q psy17474 7 ALFDLCEDEDVSVRKQAIKDLPSLCKENNEYT----------PKVTDILGQLLQ-----TNDTTEL---SVVQSSIMTLC 68 (343)
Q Consensus 7 a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v----------~kiaDVL~QLLq-----tdd~~E~---~~V~~sL~~Ll 68 (343)
.++-|.+|.++.+|.+|++-|-.+.+..+.-. +=+-|.|..+|- |.+..+. .++--+|.+|+
T Consensus 123 ~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~ 202 (282)
T PF10521_consen 123 PILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLL 202 (282)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHH
Confidence 56778999999999999999999998655433 334556666665 3444443 45555666665
Q ss_pred hh
Q psy17474 69 KN 70 (343)
Q Consensus 69 k~ 70 (343)
+.
T Consensus 203 ~~ 204 (282)
T PF10521_consen 203 KT 204 (282)
T ss_pred Hh
Confidence 54
No 95
>KOG2956|consensus
Probab=34.95 E-value=3.6e+02 Score=29.00 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=44.8
Q ss_pred CCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHH---HHhhhc---------CCchHHHHHHHHhhHhh
Q psy17474 35 NEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGM---FNLIEI---------SNGPVREKCLRFLVPKI 102 (343)
Q Consensus 35 ~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~l---f~qI~~---------~de~vRe~~lkFl~~kl 102 (343)
|+.+..++-|.-+|.+..+..-...-+.||.+|.++-..|.++++ |.+|.- .++..|..+++-|..-+
T Consensus 279 p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml 358 (516)
T KOG2956|consen 279 PNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREML 358 (516)
T ss_pred CCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH
Confidence 566777777776666655553334445566667777777766665 666531 35678888888887544
Q ss_pred hh
Q psy17474 103 KM 104 (343)
Q Consensus 103 ~~ 104 (343)
..
T Consensus 359 ~~ 360 (516)
T KOG2956|consen 359 TN 360 (516)
T ss_pred Hh
Confidence 43
No 96
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=33.66 E-value=3.1e+02 Score=30.44 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHH-HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhh
Q psy17474 114 IEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQ-KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYL 192 (343)
Q Consensus 114 ~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~-qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~f 192 (343)
+++|=+++|++-++++.+.+.+-|++.+-+++-.. + -+|+.++.+-.|| |+ =+.+.++|+..-+..=+--.
T Consensus 548 l~dfs~~~It~~~k~l~~~dl~~~I~~li~~~~~~----q~~~Ll~~vID~~GL---fn-~~~~~l~~L~~~Id~kv~~l 619 (670)
T PF10395_consen 548 LQDFSKDEITQEIKKLNKVDLNNFINFLIKLNNNE----QLWQLLSLVIDSNGL---FN-WDMETLEKLSEIIDSKVEVL 619 (670)
T ss_pred HHHhhHHHHHHHHHhhccccHHHHHHHHhccCCcc----chHHHHHHHhhcccc---cc-CCHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444455666666555443 3 5788888887777 54 37788888887776544443
Q ss_pred cc
Q psy17474 193 CS 194 (343)
Q Consensus 193 S~ 194 (343)
..
T Consensus 620 ~~ 621 (670)
T PF10395_consen 620 TQ 621 (670)
T ss_pred Hh
Confidence 33
No 97
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=33.23 E-value=1.8e+02 Score=27.15 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHH-HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhh
Q psy17474 114 IEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQ-KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYL 192 (343)
Q Consensus 114 ~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~-qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~f 192 (343)
.|..+...+|+.++. +|..+.++..+...--+..++ |-|++++.+- --.+-|++.|+.--+-+|.-|.
T Consensus 54 ~E~lL~~LVk~~iKk----~~~~~~elv~~~~~~~~~h~~iq~l~~iir~~-------Y~D~~D~~~rL~~tLa~a~~y~ 122 (182)
T PF06861_consen 54 EEALLCWLVKQSIKK----NFKQLAELVCQPSHNADKHAHIQWLMSIIRAV-------YRDHYDSWSRLCATLAYASMYA 122 (182)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHhccCCCCchhHHHHHHHHHHHHH-------HhchhhHHHHHHHHHHHHHHHH
Confidence 355777777887765 899999977777555555555 7788887753 2235568888888777888787
Q ss_pred ccCCCC---------hhHHHHHHHhhcCCCC
Q psy17474 193 CSAIPS---------TPFVSYLCEQVLPKLD 214 (343)
Q Consensus 193 S~~v~S---------t~fv~y~~~~vlP~l~ 214 (343)
.++-.+ +.+-+||+.+=.+.+.
T Consensus 123 ~~~l~~d~e~~s~v~~~lA~Fy~~~r~~Wla 153 (182)
T PF06861_consen 123 MRNLLNDHENASLVSHALAHFYLRYRRAWLA 153 (182)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544 5666788776555443
No 98
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=33.04 E-value=1.2e+02 Score=24.73 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=42.8
Q ss_pred HHHhhhhccchhhhhcC---CCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhh
Q psy17474 262 VRKQAIKDLPSLCKENN---EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLS 319 (343)
Q Consensus 262 ~r~qAik~lp~~c~~~~---~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~~~~ 319 (343)
+|..|+-.|=.+.+.+. .++++|.+++-+.|+-+|+-=+-.+=++|.+|...+|..+.
T Consensus 19 vRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 19 VRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred hHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHH
Confidence 55555555555555554 56888899988888888887777777788888888888554
No 99
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=32.80 E-value=44 Score=29.83 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHH--------HHHHHHHHHHh-ccCCCCCCCCchhh---hh
Q psy17474 113 EIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQ--------KELMEIIKHHA-ELSKSFDPSNPEDV---DR 180 (343)
Q Consensus 113 E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~--------qeLv~li~eqa-~Ld~~f~~sD~e~v---dR 180 (343)
+..++|=.++...+.+.|++|-..+.++.+.+..|++.... -+|.+-+...- .+..-|+.-+|++- ..
T Consensus 5 ~~k~~iP~ev~~~~~~Lt~eeK~~lkev~~~~~~~~~~de~i~~LK~ksP~L~~k~~~l~~~~k~ki~~L~peak~Fv~~ 84 (154)
T PF05823_consen 5 EYKELIPSEVVEFYKNLTPEEKAELKEVAKNYAKFKNEDEMIAALKEKSPSLYEKAEKLRDKLKKKIDKLSPEAKAFVKE 84 (154)
T ss_dssp HHHTT--HHHHHHHHH--TTTHHHHHHHHTT-------TTHHHHHHHH-HHHHHHHHHHHHHHHHTTTT--HHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHcCCHHHHHHHHHHHHHccccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455556666677788888888888888887777653320 11222222111 12333555566654 44
Q ss_pred HHhhHHhhhhhhccCCC-ChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHH
Q psy17474 181 SIYCSLHCVPYLCSAIP-STPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHIT 254 (343)
Q Consensus 181 li~C~~~Alp~fS~~v~-St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqlle 254 (343)
++.-.++...-++.|-. +...+..+.+.++..+..|+. +.|-+|-|.|-++..+.. -++...+++
T Consensus 85 li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~--------~ak~dL~k~FP~i~~~~~-~~k~~~~~~ 150 (154)
T PF05823_consen 85 LIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSP--------EAKDDLKKNFPIIASFLQ-NDKFQALIK 150 (154)
T ss_dssp HHHHHHHHHHHHHHT----THHHHHHH----HHHHTS-H--------HHHHHHHHH-TT----------------
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCH--------HHHHHHHHHCccchhhhh-hhhhhhccc
Confidence 44433333222223332 234556667778888888865 478899999999988876 333444433
No 100
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.30 E-value=9.9e+02 Score=29.01 Aligned_cols=279 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccC----------------ChhHHHHHHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTN----------------DTTELSVVQSSIM 65 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtd----------------d~~E~~~V~~sL~ 65 (343)
++-.+.++|+.+---..+.+.-|..||.++-| .--..+++.|.+||+.+ ++..++.|+..++
T Consensus 191 ~~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~d--s~h~~v~~~L~~ll~~~~~L~~~iLd~Ls~L~Ls~~~l~~vr~~vl 268 (1426)
T PF14631_consen 191 EELTDKLFEVLSIAPVELQKEIISSLPEILDD--SQHDEVVEELLELLQENPELTVPILDALSNLNLSPELLEEVREKVL 268 (1426)
T ss_dssp HHHHHHHHHHHHHS-TTTHHHHHHTHHHHS-G--GGHHHHHHHHHHHHHH-STTHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHhcCCchhhhHHHHHhcCCCCHHHHHHHHHHHH
Q ss_pred HHHhhChhhhHHHHHHhhhc---CCchHHHHHHHHhhHhhh-------------------------------------hh
Q psy17474 66 TLCKNDIKGALKGMFNLIEI---SNGPVREKCLRFLVPKIK-------------------------------------ML 105 (343)
Q Consensus 66 ~Llk~Dpk~tL~~lf~qI~~---~de~vRe~~lkFl~~kl~-------------------------------------~l 105 (343)
.-+..=+-..|-.+-..|.+ .++. .+++.=|++++. .+
T Consensus 269 ~~L~s~~~e~LP~lirFLL~s~t~~da--~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~l 346 (1426)
T PF14631_consen 269 EKLSSVDLEDLPVLIRFLLQSITPSDA--VEVISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCEKL 346 (1426)
T ss_dssp HSTTSS-TTHHHHHHHHHHHS-SSTTH--HHHHHHHHHHHH-------------------------------HHHHHHHH
T ss_pred HHHhcCChhhhHHHHHHHHHhCCcccH--HHHHHHHHHHccccccccchhhcccccccccCcccccccccccccccHHHH
Q ss_pred hhhhchH--HHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHHHHHHHHHhccCCCCCCCCchhhhhHHh
Q psy17474 106 GRDIMTK--EIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIY 183 (343)
Q Consensus 106 ~~~ll~~--E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~ 183 (343)
.-+.+.. -.+..+.+...|++..++...=...+|++--+-+|..-..++.-++-+.-+-=..+-|.. ..+++.+.
T Consensus 347 il~~lks~lr~~k~l~eawiK~I~~~~~~~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~---~ll~~~f~ 423 (1426)
T PF14631_consen 347 ILDVLKSGLRFSKDLSEAWIKAIESLEDASDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITE---QLLDQTFK 423 (1426)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHGGGSTT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-H---HHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCccccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccH---HHHHHHHh
Q ss_pred hHHhhhh-------------hhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCch
Q psy17474 184 CSLHCVP-------------YLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTP 250 (343)
Q Consensus 184 C~~~Alp-------------~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~p 250 (343)
...+++. +-|+...-..|=.++...+|-.++.. .|-+++..|-.-. |+ ...
T Consensus 424 ~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~-----------~qqeVv~~Lvthi--~s---g~~ 487 (1426)
T PF14631_consen 424 GHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSY-----------CQQEVVGALVTHI--GS---GNS 487 (1426)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HH-----------HHHHHHHHHHHHH--HH-----H
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccch-----------hHHHHHHHHHHHH--cC---CcH
Q ss_pred hhHHHHHHHHHHHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q psy17474 251 QHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKN 313 (343)
Q Consensus 251 qllesi~d~LL~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~ 313 (343)
+.+..+.+.|. .++..+++.+..-|-.|.-+|.-=|.-...+++..+-=|..+
T Consensus 488 ~ev~~aL~vL~----------~L~~~~~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~L 540 (1426)
T PF14631_consen 488 QEVDAALDVLC----------ELAEKNPSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTL 540 (1426)
T ss_dssp HHHHHHHHHHH----------HHHHH-HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------HHHhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
No 101
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=31.95 E-value=4.1e+02 Score=28.62 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHhhcccccChHH-----HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHH
Q psy17474 131 GDEFMQIMDLLAWSRLSQSLAG-----QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYL 205 (343)
Q Consensus 131 ~~EF~l~m~lL~~l~~~~t~~g-----~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~ 205 (343)
.++...-..+|..+-.-.+++| .+.|.+|+.+ |..+.-|+-..+..-.--=|.-+.+-++|+|+
T Consensus 314 T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~-----------DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L 382 (549)
T PF07079_consen 314 TEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCE-----------DDESYTKLRDYLNLWEEIQSYDIDRQQLVHYL 382 (549)
T ss_pred HHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhc-----------chHHHHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 3334444444444444445555 4667777763 44444444333333333347889999999999
Q ss_pred HHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCC
Q psy17474 206 CEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFY 243 (343)
Q Consensus 206 ~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~ 243 (343)
....=.-|.. +. .++.-+++||..-.+++|-
T Consensus 383 ~~~Ak~lW~~-g~------~dekalnLLk~il~ft~yD 413 (549)
T PF07079_consen 383 VFGAKHLWEI-GQ------CDEKALNLLKLILQFTNYD 413 (549)
T ss_pred HHHHHHHHhc-CC------ccHHHHHHHHHHHHhcccc
Confidence 9866655653 22 2367899999999999874
No 102
>KOG1060|consensus
Probab=31.43 E-value=8.6e+02 Score=28.04 Aligned_cols=280 Identities=18% Similarity=0.155 Sum_probs=141.4
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh------hhhHHH
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI------KGALKG 78 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp------k~tL~~ 78 (343)
+=|+-+..-|--+-||+.|..+||.+-.-.|+.-..+.|++.-||..-+|- +|--|++..=..-| ......
T Consensus 145 llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~spl---VvgsAv~AF~evCPerldLIHknyrk 221 (968)
T KOG1060|consen 145 LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPL---VVGSAVMAFEEVCPERLDLIHKNYRK 221 (968)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCc---chhHHHHHHHHhchhHHHHhhHHHHH
Confidence 346667888888999999999999999999999999999999999987763 33334443222222 123445
Q ss_pred HHHhhhcCCc----hHHHHHHHHhhHhhhhh------------------------hhhhchHHHHHHHHHHHHHhcccCC
Q psy17474 79 MFNLIEISNG----PVREKCLRFLVPKIKML------------------------GRDIMTKEIEEYTIDQCKKILRNVT 130 (343)
Q Consensus 79 lf~qI~~~de----~vRe~~lkFl~~kl~~l------------------------~~~ll~~E~E~~i~~~ikKvL~dVT 130 (343)
+|.-+..=|| .+=.-+++|-+..+-.. ++-.+.++. +.+....|-.|+.-.
T Consensus 222 lC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~-~lLL~stkpLl~S~n 300 (968)
T KOG1060|consen 222 LCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDL-KLLLQSTKPLLQSRN 300 (968)
T ss_pred HHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccH-HHHHHhccHHHhcCC
Confidence 5555544344 12233344433322221 000111222 233344444455443
Q ss_pred hhHHHHHHHHHhhcccccChHHH-----HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHH
Q psy17474 131 GDEFMQIMDLLAWSRLSQSLAGQ-----KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYL 205 (343)
Q Consensus 131 ~~EF~l~m~lL~~l~~~~t~~g~-----qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~ 205 (343)
+.= +|..-.-+-.. +|+.+ +-|+.++.+ +....++ .++|+ -++|...+ +=|-.|+
T Consensus 301 ~sV---VmA~aql~y~l-AP~~~~~~i~kaLvrLLrs---------~~~vqyv--vL~nI----a~~s~~~~-~lF~P~l 360 (968)
T KOG1060|consen 301 PSV---VMAVAQLFYHL-APKNQVTKIAKALVRLLRS---------NREVQYV--VLQNI----ATISIKRP-TLFEPHL 360 (968)
T ss_pred cHH---HHHHHhHHHhh-CCHHHHHHHHHHHHHHHhc---------CCcchhh--hHHHH----HHHHhcch-hhhhhhh
Confidence 322 22222211111 11111 223333332 2222333 33333 33443332 3444444
Q ss_pred HHh-hcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHhhhhccchhhhhcCCCcchh
Q psy17474 206 CEQ-VLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKV 284 (343)
Q Consensus 206 ~~~-vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL~r~qAik~lp~~c~~~~~~~~~v 284 (343)
... |.|. + |+ .---.|+++|..||--+.-..-+-+....+.+.-. - .-..|||.+-...+.+++..+-.
T Consensus 361 KsFfv~ss-D--p~-----~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~-~-faa~aV~AiGrCA~~~~sv~~tC 430 (968)
T KOG1060|consen 361 KSFFVRSS-D--PT-----QVKILKLEILSNLANESNISEILRELQTYIKSSDR-S-FAAAAVKAIGRCASRIGSVTDTC 430 (968)
T ss_pred hceEeecC-C--HH-----HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCch-h-HHHHHHHHHHHHHHhhCchhhHH
Confidence 432 2221 1 00 00025899999888544322111111111111100 0 22345555555556656666666
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhh
Q psy17474 285 TDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVL 318 (343)
Q Consensus 285 ~diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~~~ 318 (343)
-+-|.|||.+.|..=+...-+++-.|++.||+.-
T Consensus 431 L~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 431 LNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence 6789999999977666666667778899999875
No 103
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=31.17 E-value=68 Score=23.34 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=24.9
Q ss_pred hHHHHhhccCChhHHHHHHHHHHHHHhhChhh
Q psy17474 43 DILGQLLQTNDTTELSVVQSSIMTLCKNDIKG 74 (343)
Q Consensus 43 DVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~ 74 (343)
-|+.|+|.+.|.. ....=.++.++|+.+|..
T Consensus 9 NVll~fl~~~e~~-r~~ll~vi~tlL~fs~~e 39 (46)
T smart00755 9 NVLLQFLTLRESE-RETLLKVISTVLQLSPEE 39 (46)
T ss_pred HHHHHHhccCcch-HHHHHHHHHHHhCCCHHH
Confidence 3788999988865 777777899999998865
No 104
>KOG2235|consensus
Probab=30.87 E-value=1.5e+02 Score=32.71 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhc--cCCCCCCCCchhhhhHHhhHHhhhhh
Q psy17474 153 QKELMEIIKHHAE--LSKSFDPSNPEDVDRSIYCSLHCVPY 191 (343)
Q Consensus 153 ~qeLv~li~eqa~--Ld~~f~~sD~e~vdRli~C~~~Alp~ 191 (343)
|.+|.+=+.++.. +-.-|.+-+..+||.|+.|++-|..-
T Consensus 606 R~kla~nl~~~lr~all~l~~aLn~ksiDdF~~a~~saaea 646 (776)
T KOG2235|consen 606 REKLAENLPEMLRDALLSLFAALNSKSIDDFHDAVYSAAEA 646 (776)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHh
Confidence 5556555555422 33345566679999999999866543
No 105
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=30.85 E-value=1.6e+02 Score=23.36 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=31.4
Q ss_pred hhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHHHHH
Q psy17474 108 DIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEI 159 (343)
Q Consensus 108 ~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~l 159 (343)
.+..-+.-+-+..++++.+.+|++.|......-|-. -+=++..-|.|.++
T Consensus 8 ~Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~--eG~~~eeiq~LCdv 57 (71)
T PF04282_consen 8 RLHEGEDPEEVKEEFKKLFSDVSASEISAAEQELIQ--EGMPVEEIQKLCDV 57 (71)
T ss_pred HHhCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCCHHHHHHHhHH
Confidence 333345566677788888999999999776555543 23344444555543
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.56 E-value=5.3e+02 Score=27.45 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=47.3
Q ss_pred HHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhc-cCChhHHHH------------HHHHHHHHHhhCh
Q psy17474 6 EALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ-TNDTTELSV------------VQSSIMTLCKNDI 72 (343)
Q Consensus 6 ~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq-tdd~~E~~~------------V~~sL~~Llk~Dp 72 (343)
.-+-..|+.+...|--.|+..|-..|.++....- ..|-|+.. +.+....+. +-.-+-.+++-|+
T Consensus 182 ~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~al---slLdqli~y~~~~It~e~V~~llg~~~~~~If~L~~aI~~~d~ 258 (491)
T PRK14964 182 EHLVDIAKKENIEHDEESLKLIAENSSGSMRNAL---FLLEQAAIYSNNKISEKSVRDLLGCVDKHILEDLVEAILLGDA 258 (491)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH---HHHHHHHHhcCCCCCHHHHHHHHccCCHHHHHHHHHHHHCCCH
Confidence 3344455555555555666666666655433322 22223222 122222222 3333446778888
Q ss_pred hhhHHHHHHhhhcCCc-hHHHHHHHHhhH
Q psy17474 73 KGALKGMFNLIEISNG-PVREKCLRFLVP 100 (343)
Q Consensus 73 k~tL~~lf~qI~~~de-~vRe~~lkFl~~ 100 (343)
+.++..+-..+.+|++ .+=..++.|+++
T Consensus 259 ~~Al~~l~~Ll~~g~~~~i~~~l~~~~~~ 287 (491)
T PRK14964 259 QSALNVFRELCNTSNPVIILEGMLQIIYE 287 (491)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888877777766654 222456666654
No 107
>KOG2160|consensus
Probab=30.45 E-value=6.1e+02 Score=25.97 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=52.8
Q ss_pred HHhhccccchhHHHHHhhhhhhhhhccCCcchhhH-----hHHHHhhccCChhHH-HHHHHHHHHHHhhChhhh
Q psy17474 8 LFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVT-----DILGQLLQTNDTTEL-SVVQSSIMTLCKNDIKGA 75 (343)
Q Consensus 8 ~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kia-----DVL~QLLqtdd~~E~-~~V~~sL~~Llk~Dpk~t 75 (343)
++.+-|+.|..||.-|..-|.....+||.-...|- -.|.+.|.++++.++ ..+=-|+.++++-++.|.
T Consensus 129 ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 129 LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 34567888889999999999999999998755553 245667778888776 677778888898888664
No 108
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=30.22 E-value=67 Score=20.23 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=19.0
Q ss_pred HHHHHhhhhhhhhhccCCcchhhHhHHHHhhc
Q psy17474 19 VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ 50 (343)
Q Consensus 19 IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq 50 (343)
||..|++.|-.++- ++-.+.|.+.|+
T Consensus 1 VR~~Aa~aLg~igd------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHHhc
Confidence 79999999999887 456666666654
No 109
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=30.10 E-value=3.8e+02 Score=28.60 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=69.0
Q ss_pred HHHHHhhcc-ccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHH--------------HHHHHHHHHHHh
Q psy17474 5 IEALFDLCE-DEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTEL--------------SVVQSSIMTLCK 69 (343)
Q Consensus 5 i~a~lDLcE-DeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~--------------~~V~~sL~~Llk 69 (343)
+++++.+-= .-+..++..=++-|-.++-.++.|++.+.+.|++.+.-...... ..||.+|..+++
T Consensus 75 V~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~ 154 (563)
T PF05327_consen 75 VEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILR 154 (563)
T ss_dssp HHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 455555422 45667888888889999999999999999999999885544432 469999999999
Q ss_pred hChhhhHHHHHHhhhc------------------------CCchHHHHHHHHhhHhhhhhhhhh
Q psy17474 70 NDIKGALKGMFNLIEI------------------------SNGPVREKCLRFLVPKIKMLGRDI 109 (343)
Q Consensus 70 ~Dpk~tL~~lf~qI~~------------------------~de~vRe~~lkFl~~kl~~l~~~l 109 (343)
.=|-+ .+.+..-|.. .-+.+|+.++..+-+|+-.+-.++
T Consensus 155 lvP~s-~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi~rLi~iDVei 217 (563)
T PF05327_consen 155 LVPTS-PSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELRSDILSLIIERLIKIDVEI 217 (563)
T ss_dssp H-GGG-HHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCC-HHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhccc
Confidence 99844 3333333322 133477788888888877776643
No 110
>KOG1293|consensus
Probab=29.37 E-value=8.4e+02 Score=27.25 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=12.5
Q ss_pred chhHHHHHhhhhhhhhhc
Q psy17474 16 DVSVRKQAIKDLPSLCKE 33 (343)
Q Consensus 16 D~~IR~qAIk~Lp~lck~ 33 (343)
|...|.+|.-.+|.+.+.
T Consensus 390 d~~~~aaa~l~~~s~srs 407 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRS 407 (678)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 445777888777777653
No 111
>KOG1243|consensus
Probab=29.36 E-value=2.7e+02 Score=30.96 Aligned_cols=120 Identities=14% Similarity=0.219 Sum_probs=74.8
Q ss_pred CCchHHHHHHHHhhHhhhhhhhhhchH-------------HHHHHHHHHHHHhcccCChhHHHH-HHHHHhhcccccChH
Q psy17474 86 SNGPVREKCLRFLVPKIKMLGRDIMTK-------------EIEEYTIDQCKKILRNVTGDEFMQ-IMDLLAWSRLSQSLA 151 (343)
Q Consensus 86 ~de~vRe~~lkFl~~kl~~l~~~ll~~-------------E~E~~i~~~ikKvL~dVT~~EF~l-~m~lL~~l~~~~t~~ 151 (343)
.++.-|.+..+++.+++..++.++..+ ++=..+.+-..|.-++++++||+. |+.+|- ++|+...
T Consensus 266 ks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~--kLF~~~D 343 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLL--KLFKSPD 343 (690)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHH--HHhcCcc
Confidence 455677888888888888888777643 223345555667777888888755 666654 3444333
Q ss_pred H--HHHHHHHHHHHhc--------------cCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHH
Q psy17474 152 G--QKELMEIIKHHAE--------------LSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCE 207 (343)
Q Consensus 152 g--~qeLv~li~eqa~--------------Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~ 207 (343)
- |--|+..+..-.+ +..-|..+|+--...=+-|+-.-.|..+.++-+...++|+.+
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar 415 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLAR 415 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHh
Confidence 2 4566666665544 113344556665555666666666777777666777776664
No 112
>KOG1242|consensus
Probab=29.32 E-value=7.9e+02 Score=26.92 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=40.6
Q ss_pred hhHHHHHHHHhhcCCCCCC---CCchhhHHHHHHHHH-HHHhhhhccchhhh--hcCCCcchhHHHHHHHhh
Q psy17474 228 NQLEALKLLAELSPFYVVH---EDTPQHITSIVDCLF-VRKQAIKDLPSLCK--ENNEYTPKVTDILGQLLQ 293 (343)
Q Consensus 228 ~kl~lLK~lAEls~~~~~~---e~~pqllesi~d~LL-~r~qAik~lp~~c~--~~~~~~~~v~diL~Qll~ 293 (343)
.=+++|..+|+.+|.-=+. +-.|...+.+.|+.- +|++|++-+-.+|. +|++ +.++.=.|.+.++
T Consensus 273 aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 273 ASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALA 343 (569)
T ss_pred HHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhc
Confidence 3589999999998863211 223333444444433 89999999999996 5555 4444444444443
No 113
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.09 E-value=4.5e+02 Score=24.65 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=15.7
Q ss_pred CChhHHHHHHHHHhhcccc-cChHHHHHHHHHHHHH
Q psy17474 129 VTGDEFMQIMDLLAWSRLS-QSLAGQKELMEIIKHH 163 (343)
Q Consensus 129 VT~~EF~l~m~lL~~l~~~-~t~~g~qeLv~li~eq 163 (343)
++..+...++.-+ . .++.||.-+.+++.+.
T Consensus 233 v~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~n 263 (324)
T PF11838_consen 233 VRSQDIRYVLAGL-----ASSNPVGRDLAWEFFKEN 263 (324)
T ss_dssp S-TTTHHHHHHHH-----H-CSTTCHHHHHHHHHHC
T ss_pred cccHHHHHHHHHH-----hcCChhhHHHHHHHHHHH
Confidence 5555554443322 2 5566666666666654
No 114
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=29.07 E-value=1.6e+02 Score=32.67 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=38.2
Q ss_pred ccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh
Q psy17474 12 CEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI 72 (343)
Q Consensus 12 cEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp 72 (343)
.=|.++.||++|.+.|-.+=-....---+++.+|.-++|-|-+.|+. .+-+.-+..|+
T Consensus 141 ~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDPS~EVR---r~allni~vdn 198 (885)
T COG5218 141 LFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQNDPSDEVR---RLALLNISVDN 198 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcHHHHH---HHHHHHeeeCC
Confidence 34788999999999987665443333446666888888888777743 44443344443
No 115
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=28.64 E-value=2.7e+02 Score=26.67 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=49.3
Q ss_pred ccccchhHHHHHhhh---hhhhhhccCCcchhhHhHHHHhhccCChhHH-HHHHHHHHHHHhhChhh------hHHHHHH
Q psy17474 12 CEDEDVSVRKQAIKD---LPSLCKENNEYTPKVTDILGQLLQTNDTTEL-SVVQSSIMTLCKNDIKG------ALKGMFN 81 (343)
Q Consensus 12 cEDeD~~IR~qAIk~---Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~-~~V~~sL~~Llk~Dpk~------tL~~lf~ 81 (343)
-+|.+...|...-+. +..-=..+|++..++.....+.|......+. ...-..+...+.-+... .+..++.
T Consensus 200 ~~~~~~~lr~~~~~~l~~~i~~L~~d~~~~~~i~~~~~~~l~~~~~~~~~~~l~~~l~~~i~~~l~~~~~i~~~i~~~l~ 279 (367)
T PF04286_consen 200 QEDPDHPLRQEIDQKLRELIERLLTDPELREKIEELKDKLLSELILEEFLEELWDSLREWIKEDLSREEFIEQIISELLE 279 (367)
T ss_pred HhCcccHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 336666667655544 2223334567778888887777765433221 12223333333322222 2333332
Q ss_pred hhhc---CCchHHHHHHHHhhHhhhhhh
Q psy17474 82 LIEI---SNGPVREKCLRFLVPKIKMLG 106 (343)
Q Consensus 82 qI~~---~de~vRe~~lkFl~~kl~~l~ 106 (343)
...+ .++.+|+++.+|+...+...-
T Consensus 280 ~~~~~l~~~~~l~~~i~~~i~~~l~~~v 307 (367)
T PF04286_consen 280 ELIDKLKEDPELREKINRFIENLLERIV 307 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 2222 347888888888887665543
No 116
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=28.61 E-value=73 Score=19.98 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=21.4
Q ss_pred hHHHHHhhhhhhhhhccCCcchhhHhHHHHhhcc
Q psy17474 18 SVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQT 51 (343)
Q Consensus 18 ~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqt 51 (343)
.||..|+..|-+++- ++..+.|.++|+.
T Consensus 2 ~vR~~aa~aLg~~~~------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC------HhHHHHHHHHhcC
Confidence 589999999998843 4566777777764
No 117
>KOG1077|consensus
Probab=28.42 E-value=2.2e+02 Score=32.14 Aligned_cols=51 Identities=27% Similarity=0.419 Sum_probs=43.0
Q ss_pred cccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHH--HHHHHHHH
Q psy17474 13 EDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTEL--SVVQSSIM 65 (343)
Q Consensus 13 EDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~--~~V~~sL~ 65 (343)
-+.|++||+.|.-=|=.+|.. ++.+-|++=|.|+|-|-|++-. -+++-|+.
T Consensus 379 terDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAIL 431 (938)
T KOG1077|consen 379 TERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAIL 431 (938)
T ss_pred cccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 389999999999999999987 8999999999999999888433 35666654
No 118
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.35 E-value=4.5e+02 Score=26.12 Aligned_cols=35 Identities=9% Similarity=0.052 Sum_probs=18.5
Q ss_pred hccccchhHHHHHhhhhhhhhhccCCcchhhHhHH
Q psy17474 11 LCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDIL 45 (343)
Q Consensus 11 LcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL 45 (343)
.++.+...+-..|++.|-..+.+++...-...|-+
T Consensus 190 ~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~ 224 (363)
T PRK14961 190 ILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHA 224 (363)
T ss_pred HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33344444445666667777776655444444433
No 119
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=28.08 E-value=3e+02 Score=28.41 Aligned_cols=53 Identities=23% Similarity=0.153 Sum_probs=27.8
Q ss_pred HHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHH
Q psy17474 6 EALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSI 64 (343)
Q Consensus 6 ~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL 64 (343)
..+.-+-+|+|..||.+|++.|..++.. +.++. |...++.++++-+...-.+|
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~~--~a~~~----L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPRR--LSEST----LRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccc--cchHH----HHHHHcCCCHHHHHHHHHHH
Confidence 3444444566666666666666666543 44444 33445555555444433333
No 120
>KOG1410|consensus
Probab=27.92 E-value=1.2e+02 Score=34.21 Aligned_cols=88 Identities=22% Similarity=0.317 Sum_probs=61.3
Q ss_pred hhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchH-HHH---HHHHHHHHHhccc----CChhHHHHHHHHHhhcc
Q psy17474 74 GALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTK-EIE---EYTIDQCKKILRN----VTGDEFMQIMDLLAWSR 145 (343)
Q Consensus 74 ~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~-E~E---~~i~~~ikKvL~d----VT~~EF~l~m~lL~~l~ 145 (343)
.||.-+|+-..+-.+..-++++..|. ++.+..+.+++. |-. .+++++.|++|+. .....|+.|-.+|..+|
T Consensus 255 stlqlfFdly~slp~~~S~~alsclv-qlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 255 STLQLFFDLYHSLPPELSELALSCLV-QLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred hHHHHHHHHhccCCchhhHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHH
Confidence 35666777666666677888888888 688888999843 222 2567888888862 24677888888888777
Q ss_pred c-cc-----ChHHHHHHHHHHHH
Q psy17474 146 L-SQ-----SLAGQKELMEIIKH 162 (343)
Q Consensus 146 ~-~~-----t~~g~qeLv~li~e 162 (343)
. || .+.|--+.+.+++|
T Consensus 334 tNYQL~ELv~v~~Y~e~irLiAe 356 (1082)
T KOG1410|consen 334 TNYQLGELVKVECYPEVIRLIAE 356 (1082)
T ss_pred hhhhhHhhhccCCcHHHHHHHHH
Confidence 5 32 45555666666665
No 121
>KOG1824|consensus
Probab=27.60 E-value=80 Score=36.52 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=62.8
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLI 83 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI 83 (343)
-|...+-+.+|+|..||+.|.-.+-...++-|-.+.-+-+=|.++|-++. .|++.|+.-..|-| |.|.
T Consensus 1008 ~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eT-----kvrkelIreVeMGP-------FKH~ 1075 (1233)
T KOG1824|consen 1008 QIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSET-----KVRKELIREVEMGP-------FKHT 1075 (1233)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhh-----hhhHhhhhhhcccC-------cccc
Confidence 46677889999999999999999999999988887777777777776665 46777777677767 6666
Q ss_pred hcCCchHHHHHHHHhh
Q psy17474 84 EISNGPVREKCLRFLV 99 (343)
Q Consensus 84 ~~~de~vRe~~lkFl~ 99 (343)
....=.+|..+.+.+-
T Consensus 1076 VDdgLd~RKaaFEcmy 1091 (1233)
T KOG1824|consen 1076 VDDGLDLRKAAFECMY 1091 (1233)
T ss_pred ccchHHHHHHHHHHHH
Confidence 5333356666655544
No 122
>PF05503 Pox_G7: Poxvirus G7-like ; InterPro: IPR008787 This family of proteins which include vaccinia virus G7L and fowlpox virus FPV120 are associated with the intracellualar mature virus particle. The function of this family of proteins is not known.
Probab=27.43 E-value=1.4e+02 Score=30.56 Aligned_cols=73 Identities=23% Similarity=0.390 Sum_probs=40.4
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhh-ccCChhHHHHHHHHHHHHHhhChhhhHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLL-QTNDTTELSVVQSSIMTLCKNDIKGALKGMF 80 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLL-qtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf 80 (343)
|++||++++.||.+ ||+.-+.+|-.+ -|=|-.-- ---+..|+.-++|||..+=+- .++|
T Consensus 49 esiiNsIy~~cE~~---i~i~~~~~L~~i-----------L~~Lr~~s~yV~n~~EF~rLynsL~RfTH~------~SFF 108 (363)
T PF05503_consen 49 ESIINSIYDKCESE---IRITDIEHLKSI-----------LDNLRRYSVYVCNSSEFWRLYNSLYRFTHC------KSFF 108 (363)
T ss_pred HHHHHHHHHHHHhc---CCCCCHHHHHHH-----------HHhhcccceeecChHHHHHHHHHHHHHhhh------HHHH
Confidence 56788888888876 443333222222 11111111 135679999999999986443 4566
Q ss_pred HhhhcCCchHHHHHHHH
Q psy17474 81 NLIEISNGPVREKCLRF 97 (343)
Q Consensus 81 ~qI~~~de~vRe~~lkF 97 (343)
.-.. +.+|.-+-.+
T Consensus 109 ~tC~---pTI~aTLaTL 122 (363)
T PF05503_consen 109 NTCM---PTIRATLATL 122 (363)
T ss_pred HHhH---HHHHHHHHHH
Confidence 6543 4444443333
No 123
>KOG1991|consensus
Probab=27.31 E-value=1.1e+03 Score=27.75 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHH
Q psy17474 154 KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEAL 233 (343)
Q Consensus 154 qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lL 233 (343)
|.|+..+...+.=+.+++++|.|.==--+-|++..--...+--+....+.++--.++|..+.+-. ....|+-
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~--------~~i~dfy 659 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILK--------NDITDFY 659 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--------HhhHHHH
Confidence 56666666555545556666655333455666655544544444556888888889998887754 2456777
Q ss_pred HHHHhhcCCCCCCC--Cchh---hHHHHHHHHH--------HHHhhhh-----ccchhhhhcCCCcchhHHHHHHHhhcC
Q psy17474 234 KLLAELSPFYVVHE--DTPQ---HITSIVDCLF--------VRKQAIK-----DLPSLCKENNEYTPKVTDILGQLLQTN 295 (343)
Q Consensus 234 K~lAEls~~~~~~e--~~pq---llesi~d~LL--------~r~qAik-----~lp~~c~~~~~~~~~v~diL~Qll~~d 295 (343)
.-+=|+..+++-+- ..|+ +++-+++++. --+.|++ +-|++|+ |+.|+.-+-+|..++|-++
T Consensus 660 eE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s-~~~y~~il~~i~~~~l~~e 738 (1010)
T KOG1991|consen 660 EELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLS-NPDYLQILLEIIKKVLTSE 738 (1010)
T ss_pred HHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhc-cchHHHHHHHHHHHHHcCC
Confidence 77777777666443 3454 4446666655 3455555 6688887 5689999999999999985
Q ss_pred --CchhHH
Q psy17474 296 --DTTELS 301 (343)
Q Consensus 296 --~~~e~~ 301 (343)
+..|..
T Consensus 739 ~~~D~d~~ 746 (1010)
T KOG1991|consen 739 NGEDSDCE 746 (1010)
T ss_pred CCchHHHH
Confidence 344444
No 124
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=26.43 E-value=2.1e+02 Score=29.97 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=44.2
Q ss_pred cchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhc--cCChhH-HHHHHHHHHHHHhh
Q psy17474 15 EDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ--TNDTTE-LSVVQSSIMTLCKN 70 (343)
Q Consensus 15 eD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq--tdd~~E-~~~V~~sL~~Llk~ 70 (343)
++...|..||..|..++|..|..+.+-.+++..|.. .+++.| +..++.||.++...
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 466889999999999999999999888888888877 455555 44778887765443
No 125
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=25.24 E-value=1.5e+02 Score=33.24 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=67.0
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhh--HhHHHHhhccCChhHHHHHHHHHHHHHhhChh---hhH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKV--TDILGQLLQTNDTTELSVVQSSIMTLCKNDIK---GAL 76 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~ki--aDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk---~tL 76 (343)
+.+++.+.++.+|...-||+.|+=++-.+=+-+++++.-. .|+|.-|++..|| .++.+||.++.-.||. +-.
T Consensus 126 ~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP---~Vi~nAl~sl~~i~~e~a~~~~ 202 (757)
T COG5096 126 GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDP---IVIANALASLAEIDPELAHGYS 202 (757)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCc---hHHHHHHHHHHHhchhhhhhHH
Confidence 5789999999999999999999999999998888988776 6777777777666 4789999999999997 555
Q ss_pred HHHHHhhhc
Q psy17474 77 KGMFNLIEI 85 (343)
Q Consensus 77 ~~lf~qI~~ 85 (343)
+..+.+|.+
T Consensus 203 ~~~~~~i~~ 211 (757)
T COG5096 203 LEVILRIPQ 211 (757)
T ss_pred HHHHHHhhh
Confidence 566666654
No 126
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=24.78 E-value=5.5e+02 Score=25.72 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=55.8
Q ss_pred HHHHhcc-cCChhHHHHHHHHHhhcccccC---hHH---HH-HHHHHHHHHhccCCC-CCCCCchhhhhHHhhHHh-hhh
Q psy17474 121 QCKKILR-NVTGDEFMQIMDLLAWSRLSQS---LAG---QK-ELMEIIKHHAELSKS-FDPSNPEDVDRSIYCSLH-CVP 190 (343)
Q Consensus 121 ~ikKvL~-dVT~~EF~l~m~lL~~l~~~~t---~~g---~q-eLv~li~eqa~Ld~~-f~~sD~e~vdRli~C~~~-Alp 190 (343)
.+|+++. .+|.+||.-|.+++..-...+. ..+ +. -+++++.---+++.. -=-.|++-+.+++.-+-- --+
T Consensus 101 ~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~ 180 (292)
T PF13929_consen 101 LLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT 180 (292)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc
Confidence 5688887 8899999999988653333322 222 22 222332221122221 013477888877776522 111
Q ss_pred hhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcC
Q psy17474 191 YLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP 241 (343)
Q Consensus 191 ~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~ 241 (343)
+-.....++.|++. .++.-++. ..=..+|+.|||.=.
T Consensus 181 ---~l~alYEvV~~l~~----t~~~~l~~-------~vi~~Il~~L~~~~d 217 (292)
T PF13929_consen 181 ---KLNALYEVVDFLVS----TFSKSLTR-------NVIISILEILAESRD 217 (292)
T ss_pred ---chhhHHHHHHHHHh----ccccCCCh-------hHHHHHHHHHHhccc
Confidence 11222566677762 22222221 355678888888643
No 127
>KOG1967|consensus
Probab=24.60 E-value=1.2e+03 Score=27.36 Aligned_cols=218 Identities=17% Similarity=0.174 Sum_probs=121.3
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhhhhccCC-c-chhhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh---------h
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKENNE-Y-TPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI---------K 73 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e-~-v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp---------k 73 (343)
..++=+--+++++.+|..||.-|.+.--+.|. + .++=+-+|-|+-|++=..+..+.-+.|-.+=..++ .
T Consensus 45 V~sl~~yl~s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll~fyq~rldd~~la~~~~l~~l~aL~~~~~~p~~~iv 124 (1030)
T KOG1967|consen 45 VTSLGTYLTSDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLLQFYQNRLDDSALAKEAVLGGLKALILMSKLPDNFIV 124 (1030)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhhcCCchHHH
Confidence 44555667899999999999999988777665 3 56678899999998665555433333332322333 3
Q ss_pred hhHHHHHHhhhcCCch------HHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc-cCChhHHHHHHHHHhhccc
Q psy17474 74 GALKGMFNLIEISNGP------VREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR-NVTGDEFMQIMDLLAWSRL 146 (343)
Q Consensus 74 ~tL~~lf~qI~~~de~------vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~-dVT~~EF~l~m~lL~~l~~ 146 (343)
..+.+||+...-+--. +-+-+.+|+..+...+ ++-+-+++.+.+.+++. .-.+--..+.|.+++.+-.
T Consensus 125 sllkalfq~~~vqs~aq~~R~~~~~Il~~~l~~~~~~l-----~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s 199 (1030)
T KOG1967|consen 125 SLLKALFQEVQVQSLAQKERLLQYEILEWFLDYRLEFL-----KSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISS 199 (1030)
T ss_pred HHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHH-----hcccchHHHHHHHHHhcCCCCchhhHHHHHHHHHHhh
Confidence 3455666654322111 2233334444443222 22245566666666653 3334455566666665555
Q ss_pred -ccChHH-HHHHHHHHHHHhccCCCCC--CCCchhhh--hHHhhHHhhhhhhccCCCChhHH-HHHHHhhcCCCCCCCCc
Q psy17474 147 -SQSLAG-QKELMEIIKHHAELSKSFD--PSNPEDVD--RSIYCSLHCVPYLCSAIPSTPFV-SYLCEQVLPKLDQIPET 219 (343)
Q Consensus 147 -~~t~~g-~qeLv~li~eqa~Ld~~f~--~sD~e~vd--Rli~C~~~Alp~fS~~v~St~fv-~y~~~~vlP~l~~L~~~ 219 (343)
-.+..| -++|.|++.=- ..=.|. +.|+-.|. .+..-+|-|+ .||++| .|..-.++-+++ +
T Consensus 200 ~~~~l~~F~edlFeV~~CY--FPI~Fkppk~D~~~I~reDL~~sLr~al-------~stP~Fa~~~lp~LlEKL~---a- 266 (1030)
T KOG1967|consen 200 LNFPLGPFTEDLFEVIACY--FPITFKPPKDDTITIRREDLKASLRSAL-------VSTPSFAPFALPLLLEKLN---A- 266 (1030)
T ss_pred ccCCCCccHHHHHHHhhee--eeeeccCCCCCcccccHHHHHHHHHHHH-------hcCccchhhHHHHHHHHhc---c-
Confidence 334444 47788877622 222233 44554443 2333333332 334443 333333444443 3
Q ss_pred ccccCCchhhHHHHHHHHhhcCCCC
Q psy17474 220 KDEAGGLDNQLEALKLLAELSPFYV 244 (343)
Q Consensus 220 ~~e~~~~~~kl~lLK~lAEls~~~~ 244 (343)
+.+-.|+|-|+.+-|.|.-+|
T Consensus 267 ----s~~~~K~DsL~~L~ec~~~yg 287 (1030)
T KOG1967|consen 267 ----SDPSAKVDSLDTLNECCLKYG 287 (1030)
T ss_pred ----ccchhhhhHHHHHHHHHHHhC
Confidence 233479999999999988887
No 128
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=24.13 E-value=2e+02 Score=24.90 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=28.1
Q ss_pred hhhHHHHHHhhhcCCch-H------HHHHHHHhhHhhhhhhhhhchH-HHHHHHH
Q psy17474 73 KGALKGMFNLIEISNGP-V------REKCLRFLVPKIKMLGRDIMTK-EIEEYTI 119 (343)
Q Consensus 73 k~tL~~lf~qI~~~de~-v------Re~~lkFl~~kl~~l~~~ll~~-E~E~~i~ 119 (343)
...+..++..+....+. + ..++++||.++++....+...| .+.+.+.
T Consensus 91 ~~el~~~v~~vi~~n~~~v~~~~~Gk~k~~~~LvGqvMk~t~G~adp~~v~~~l~ 145 (148)
T PF02637_consen 91 EEELEALVEEVIAENPKEVEDYRNGKKKAIGFLVGQVMKETKGRADPKEVKELLK 145 (148)
T ss_dssp CCHHHHHHHHHHHC-HHHHHHHCTT-TTCCHHHHHHHHHCTTS-C-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHcChHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34556666665544321 1 1488999999999988887766 5555553
No 129
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=23.78 E-value=3.6e+02 Score=22.33 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=26.5
Q ss_pred HHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhc
Q psy17474 7 ALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ 50 (343)
Q Consensus 7 a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq 50 (343)
.+.|+....+..-|++|+++|-.+.|-.+.+++..+-=+.-.||
T Consensus 19 ~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~ 62 (107)
T PF08064_consen 19 VLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQ 62 (107)
T ss_pred HHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455556666777788888777777666665444433333444
No 130
>KOG4653|consensus
Probab=23.77 E-value=6.9e+02 Score=28.92 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=29.3
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccC
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENN 35 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~ 35 (343)
+..+...+|.-+|+|+=|=-.||+++..+|-=.|
T Consensus 767 ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~ 800 (982)
T KOG4653|consen 767 EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP 800 (982)
T ss_pred HHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc
Confidence 4568889999999999999999999999996433
No 131
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=23.38 E-value=1.7e+02 Score=23.41 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=29.9
Q ss_pred HHHHHhcccCChhHHHHHHHHHhhccc--ccChH-------HHHHHHHHHHHH
Q psy17474 120 DQCKKILRNVTGDEFMQIMDLLAWSRL--SQSLA-------GQKELMEIIKHH 163 (343)
Q Consensus 120 ~~ikKvL~dVT~~EF~l~m~lL~~l~~--~~t~~-------g~qeLv~li~eq 163 (343)
+.+...|++.+.+||..|...|..-.. ++.++ ++..|++++.+.
T Consensus 2 ~~Ll~~Le~L~~~ElkkFK~~L~~~~~~g~~~Ip~~~le~ad~~dla~lLv~~ 54 (82)
T cd08321 2 DLLLDALEDLEEDELKKFKWKLRDIPLEGFPRIPRGELENADRVDLVDKMVQF 54 (82)
T ss_pred hHHHHHHHHhCHHHHHHHHHHHhhhhhccCCCCChHhhccCCHHHHHHHHHHH
Confidence 456788999999999999999996432 22221 245666666654
No 132
>KOG0413|consensus
Probab=23.04 E-value=9.8e+02 Score=28.54 Aligned_cols=293 Identities=18% Similarity=0.179 Sum_probs=144.2
Q ss_pred HHHHhhccccchhHHHHHhhhhhhhhhccCCcc-------h------------------h-hHhHHHHhhcc-CCh----
Q psy17474 6 EALFDLCEDEDVSVRKQAIKDLPSLCKENNEYT-------P------------------K-VTDILGQLLQT-NDT---- 54 (343)
Q Consensus 6 ~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v-------~------------------k-iaDVL~QLLqt-dd~---- 54 (343)
--+=+||-|+-+.||+++...|-.+=..+|... - + |--+|+|+|.+ +|-
T Consensus 619 ~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~L 698 (1529)
T KOG0413|consen 619 SILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTL 698 (1529)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHH
Confidence 345689999999999999999888777766554 1 1 33455665553 330
Q ss_pred -hHHHHH---HHHHHHHHh---hChhhhHHHHHHhhh-cCCc-------hHHHHHHHHhhHhhhh-hhh-hhchH-----
Q psy17474 55 -TELSVV---QSSIMTLCK---NDIKGALKGMFNLIE-ISNG-------PVREKCLRFLVPKIKM-LGR-DIMTK----- 112 (343)
Q Consensus 55 -~E~~~V---~~sL~~Llk---~Dpk~tL~~lf~qI~-~~de-------~vRe~~lkFl~~kl~~-l~~-~ll~~----- 112 (343)
.++..+ ..-|+..++ .--|...++|=+++. +|.| ..|..+++|.+.-+.- ++. .-++.
T Consensus 699 L~~i~~~~~~s~yl~~~~h~w~~~~k~~~t~~d~~~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~ 778 (1529)
T KOG0413|consen 699 LDTIESVTNHSQYLMSTLHDWVREKKVKRTVMDSMKQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLV 778 (1529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHH
Confidence 222222 222332222 222444455555553 3443 3778888888722111 111 11111
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHHHHHHh---hcccccChHHH-HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhh
Q psy17474 113 EIEEYTIDQCKKILRNVTGDEFMQIMDLLA---WSRLSQSLAGQ-KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHC 188 (343)
Q Consensus 113 E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~---~l~~~~t~~g~-qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~A 188 (343)
..-.+|..-|+|+=.+...++.+....-++ ..+.+++.-.. -.+++-+....--...|....-|.+ .+-|....
T Consensus 779 ~~L~hI~~~i~~i~~~l~s~~vd~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l--~~~c~d~i 856 (1529)
T KOG0413|consen 779 QYLIHIIENIKKIDDDLKSDLVDTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETL--LIKCFDTI 856 (1529)
T ss_pred HHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhH--HHhcccee
Confidence 344566667777777778888888777776 34444554443 4566666655443455544444444 44454444
Q ss_pred hhhhcc-------CCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcC----CCC---------CCCC
Q psy17474 189 VPYLCS-------AIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP----FYV---------VHED 248 (343)
Q Consensus 189 lp~fS~-------~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~----~~~---------~~e~ 248 (343)
.|-|-. ...|-+.=+-+|....=.|+..+...|- ......+.+|-.-.+-.+ |+. .+.
T Consensus 857 ~~~~~~~~~~~~~~~~s~~~~~~l~~~y~v~~~~~~ql~P~-ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp- 934 (1529)
T KOG0413|consen 857 VQSFEMFKDKDEWKRNSESQERLLCTAYNVAFSYSPQLVPH-ARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQP- 934 (1529)
T ss_pred hhHHhhhhhhHHHhhcchhHHHHHHHHhhccccccceeccc-hhccceeeeeeeeeccCCCCCCCCCccchhhCcccCC-
Confidence 444321 1122222222222211112222221110 000122333322222211 110 111
Q ss_pred chhhHHHHHHHHHHHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHHHHHHH
Q psy17474 249 TPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSS 306 (343)
Q Consensus 249 ~pqllesi~d~LL~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~~v~~s 306 (343)
+++.-++.+ .=++|.+++=-|-.+|--..+...|.-=.|+|=|+-. +-.+++|-
T Consensus 935 ~~~v~g~~~-~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~---~~~aiRnN 988 (1529)
T KOG0413|consen 935 SSKVEGAMF-SDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYN---TAHAIRNN 988 (1529)
T ss_pred Ccccccccc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh---hHHHHhcc
Confidence 122222221 1238899999999999877666666777777766543 33455553
No 133
>KOG1222|consensus
Probab=22.95 E-value=1e+03 Score=26.15 Aligned_cols=251 Identities=18% Similarity=0.276 Sum_probs=139.9
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHh-----HHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHH
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGM 79 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaD-----VL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~l 79 (343)
++.++-|.--+++..|+..++=+-.++=|. ...+|.+- -|+-||.+|.. ..-|+.-++++....-..+|
T Consensus 347 veKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~-----~~iA~~~lYh~S~dD~~K~M 420 (791)
T KOG1222|consen 347 VEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTK-----HGIALNMLYHLSCDDDAKAM 420 (791)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCccc-----chhhhhhhhhhccCcHHHHH
Confidence 566777777778888999999888888774 34444332 35667777753 23366677777777777888
Q ss_pred HHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHH--HHhcc-cCChhHHHH------------HHHHHhhc
Q psy17474 80 FNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQC--KKILR-NVTGDEFMQ------------IMDLLAWS 144 (343)
Q Consensus 80 f~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~i--kKvL~-dVT~~EF~l------------~m~lL~~l 144 (343)
|-+- .|++.+-.-+..-.....+.++-.+-+..+ |+.-| =+-|...++ +|.+++.+
T Consensus 421 fayT---------dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni 491 (791)
T KOG1222|consen 421 FAYT---------DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI 491 (791)
T ss_pred HHHH---------HHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHh
Confidence 8753 233333222222111111112111111111 01111 113444444 45555544
Q ss_pred ccccChHHHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhh------ccCCCChhHHHHHHHhhcCCCCCCCC
Q psy17474 145 RLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYL------CSAIPSTPFVSYLCEQVLPKLDQIPE 218 (343)
Q Consensus 145 ~~~~t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~f------S~~v~St~fv~y~~~~vlP~l~~L~~ 218 (343)
+.-..+. +...++++.+-|+.-.. .+.|.+ .+.|+-.-.-+- +.-..|-+++-|+-+++.|-.+
T Consensus 492 SqHeg~t-qn~FidyvgdLa~i~~n---d~~E~F--~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~---- 561 (791)
T KOG1222|consen 492 SQHEGAT-QNMFIDYVGDLAGIAKN---DNSESF--GLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGAD---- 561 (791)
T ss_pred hhccchH-HHHHHHHHHHHHHHhhc---CchHHH--HHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCcc----
Confidence 4333322 45678888888776543 244554 889986553332 3455667777788887777433
Q ss_pred cccccCCchhhHHHHHHHHhhcCCCCCCCCchhh---HHH--HHHHHHHHHhhhhccchhhhhcCCCcchhHHHHHHHhh
Q psy17474 219 TKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQH---ITS--IVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ 293 (343)
Q Consensus 219 ~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pql---les--i~d~LL~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~ 293 (343)
+++..|++ .-+||++..-..+ +.. ++++ .-+|-+-|.+.-|++-.|.-|.-|+|.
T Consensus 562 ------eddLvL~~-------vi~~GT~a~d~~cA~Lla~a~~i~t-------lieLL~a~QeDDEfV~QiiyVF~Q~l~ 621 (791)
T KOG1222|consen 562 ------EDDLVLQI-------VIACGTMARDLDCARLLAPAKLIDT-------LIELLQACQEDDEFVVQIIYVFLQFLK 621 (791)
T ss_pred ------chhhhhHH-------HHHhhhhhhhhHHHHHhCccccHHH-------HHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 23455553 3467765322211 111 2332 233666788888999999999999987
Q ss_pred cCCchhH
Q psy17474 294 TNDTTEL 300 (343)
Q Consensus 294 ~d~~~e~ 300 (343)
-+-..++
T Consensus 622 He~tr~~ 628 (791)
T KOG1222|consen 622 HELTRRL 628 (791)
T ss_pred HHHHHHH
Confidence 7555544
No 134
>KOG1104|consensus
Probab=22.71 E-value=6.6e+02 Score=28.40 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=90.6
Q ss_pred ccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhhhcCCchHH
Q psy17474 12 CEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVR 91 (343)
Q Consensus 12 cEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~~de~vR 91 (343)
-|||.-.=|++.+....++||.=...+.++++ .|..+.|.+ +.+++.-+..+-+..|
T Consensus 9 ~edE~y~~rr~r~~~~e~l~krl~~~i~~vg~------~s~ss~e~~-----------------l~~l~~~l~~~~~~~~ 65 (759)
T KOG1104|consen 9 DEDENYDDRRRRISPAETLEKRLESLIREVGE------PSGSSVEDN-----------------LENLVAVLEADLENFK 65 (759)
T ss_pred ccccccccccccCCcHHHHHHHHHHHHHhhcC------CCCCcHHHh-----------------HHHHHHHHHhhHHHHH
Confidence 34554455666777777777764444444442 233334433 5666666666666788
Q ss_pred HHHHHHhhHhhhhhhhh---------hc-------hHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccC--hHHH
Q psy17474 92 EKCLRFLVPKIKMLGRD---------IM-------TKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQS--LAGQ 153 (343)
Q Consensus 92 e~~lkFl~~kl~~l~~~---------ll-------~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t--~~g~ 153 (343)
..+|.+|..=+.-+|+- ++ -.|.=+++..+.+.+|..-.-.|...+.-+|..|...+- ++.-
T Consensus 66 ~~iL~~L~~ca~~lP~K~~~yaTLvgllN~kn~~fg~~~v~~~~~~~q~sl~~~~~n~ar~llrfL~dL~~~~vl~~~sl 145 (759)
T KOG1104|consen 66 SKILDILNTCAVYLPEKITAYATLVGLLNLKNFNFGGEFVEYMIEELQESLKSGNWNEARYLLRFLSDLSNCHVLQADSL 145 (759)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhcCCccChHHH
Confidence 88888888766665541 11 237777788888888887777788776666666554332 2222
Q ss_pred HHHHHHHHHHhc-cCCCCCCCCchhhhhHHhhHHhhhhhhcc
Q psy17474 154 KELMEIIKHHAE-LSKSFDPSNPEDVDRSIYCSLHCVPYLCS 194 (343)
Q Consensus 154 qeLv~li~eqa~-Ld~~f~~sD~e~vdRli~C~~~Alp~fS~ 194 (343)
-.+.+.+.+-+. +.. ..+ .=|-+++|+.-++|||-+
T Consensus 146 i~l~esl~~~~~e~~~-Pqv----r~D~~v~~vLs~lPw~g~ 182 (759)
T KOG1104|consen 146 INLFESLLDAAIEENV-PQV----RRDYYVYCVLSSLPWFGR 182 (759)
T ss_pred HHHHHHHHHHHHhhcC-cch----hhhHHHHHHHhccchhhh
Confidence 333333332221 221 111 125688999999999855
No 135
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=22.62 E-value=1.2e+03 Score=26.56 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=35.5
Q ss_pred hhhhhhhccCCcchhhHhHHHHhhc---cCC----hhHHHHHHHHHHHHHhhChhh
Q psy17474 26 DLPSLCKENNEYTPKVTDILGQLLQ---TND----TTELSVVQSSIMTLCKNDIKG 74 (343)
Q Consensus 26 ~Lp~lck~~~e~v~kiaDVL~QLLq---tdd----~~E~~~V~~sL~~Llk~Dpk~ 74 (343)
.=|.+..+|++...+...||.|... +.. ..-++.+-.-|..|-++.|-.
T Consensus 454 ~hpsLa~~NK~Kl~~f~~vLlq~i~~la~~~~~~~~~~ld~L~~~L~~Laq~~p~~ 509 (840)
T PF04147_consen 454 YHPSLAEGNKEKLQVFFGVLLQHILYLASQDSPPPFEVLDSLIPHLYDLAQKYPEE 509 (840)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6699999999999999999999765 333 233555555566666666643
No 136
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=22.42 E-value=4.6e+02 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhccCCCCCCCCchhhhhHHhhH
Q psy17474 154 KELMEIIKHHAELSKSFDPSNPEDVDRSIYCS 185 (343)
Q Consensus 154 qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~ 185 (343)
+...+++.+-.+.-++...+|.|.-.|-|-++
T Consensus 288 ~R~a~~l~eel~~~g~v~~~dve~Aq~~I~~~ 319 (339)
T PRK05686 288 KRAAEMLREDLEALGPVRLSDVEEAQKKIVQI 319 (339)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 55667777766666666777777655555443
No 137
>COG4789 EscV Type III secretory pathway, component EscV [Intracellular trafficking and secretion]
Probab=22.35 E-value=1.9e+02 Score=31.83 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=56.2
Q ss_pred hhhhhhhhccCCc--chhhHhHHHHhhccCChh-HHHHHHHHHHHHHhhChhhhHHHHHHhhhcCCchHHHHHHHHhhHh
Q psy17474 25 KDLPSLCKENNEY--TPKVTDILGQLLQTNDTT-ELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPK 101 (343)
Q Consensus 25 k~Lp~lck~~~e~--v~kiaDVL~QLLqtdd~~-E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~~de~vRe~~lkFl~~k 101 (343)
++-|.+.|+--++ +.||||||-.|++.+-+. -++.+-.||.. --||.-=.. .-.|-+|.-+=.+||.|
T Consensus 511 ~~Y~dLvKEvqR~ip~qriaeiLqRLv~E~IsIRnmR~IlEaL~~---W~~kEKDvv------~LtEYVR~aL~R~Ic~k 581 (689)
T COG4789 511 RKYSDLVKEVQRQIPLQRIAEILQRLVEERISIRNMRLILEALVE---WAPKEKDVV------MLTEYVRSALKRYICHK 581 (689)
T ss_pred hhhHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHh---hcccCCcee------ehHHHHHHHHHHHHHHH
Confidence 3456666655444 689999999999876652 23334333332 222210011 11355888888888888
Q ss_pred hhh----hhhhhchHHHHHHHHHHHHHh
Q psy17474 102 IKM----LGRDIMTKEIEEYTIDQCKKI 125 (343)
Q Consensus 102 l~~----l~~~ll~~E~E~~i~~~ikKv 125 (343)
... ++.-++.+|.|+.+++.|+..
T Consensus 582 ~s~~~~~l~a~ll~~~iE~~iR~~IRqT 609 (689)
T COG4789 582 FSNGGTILPALLLDPEIEDVIREAIRQT 609 (689)
T ss_pred hcCCCcceeEEEeChhHHHHHHhhhccC
Confidence 654 444556889999998887643
No 138
>PF09088 MIF4G_like: MIF4G like; InterPro: IPR015172 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 1", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=22.21 E-value=3.1e+02 Score=25.71 Aligned_cols=64 Identities=16% Similarity=0.327 Sum_probs=43.5
Q ss_pred hHHHHhhccCChhHHH-HHHHHHHHHHhhChhh-------hHHHHHHhhhcCCchHHHHHHHHhhHhhhhhh
Q psy17474 43 DILGQLLQTNDTTELS-VVQSSIMTLCKNDIKG-------ALKGMFNLIEISNGPVREKCLRFLVPKIKMLG 106 (343)
Q Consensus 43 DVL~QLLqtdd~~E~~-~V~~sL~~Llk~Dpk~-------tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~ 106 (343)
-||+||++--.|.-.. .-+.-|.++.|..|+. +..-+|+++.+=|-..+.|.+.+.+.++-+.+
T Consensus 74 ~ifs~mf~LP~p~~~~iyY~sllielCk~~P~~i~pv~~~air~ly~~l~~md~e~~~Rf~dWfS~hLSNF~ 145 (191)
T PF09088_consen 74 TIFSQMFQLPSPPHKLIYYHSLLIELCKLSPSAIPPVLGRAIRFLYRNLDSMDFELRDRFVDWFSHHLSNFG 145 (191)
T ss_dssp HHHHHHT-SS--SS-HHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHGGGGB-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCC
Confidence 3679999977764444 4555566999999853 45567777766677899999999998876654
No 139
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.83 E-value=8e+02 Score=27.84 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=27.9
Q ss_pred HHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHH-HHHHHHHHHHhccC
Q psy17474 117 YTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQ-KELMEIIKHHAELS 167 (343)
Q Consensus 117 ~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~-qeLv~li~eqa~Ld 167 (343)
...+.+++..+..+..+...+++.+.......+-++. +-+++++.-+.-+.
T Consensus 314 d~~~~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll~ 365 (824)
T PRK07764 314 DQLDRMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLLP 365 (824)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhh
Confidence 3444555666778888877777776655222222222 33566666555443
No 140
>KOG2274|consensus
Probab=21.07 E-value=1.4e+02 Score=34.21 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=50.5
Q ss_pred hccccchhHHHHHhhhhhhhhhccC--CcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhh
Q psy17474 11 LCEDEDVSVRKQAIKDLPSLCKENN--EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGA 75 (343)
Q Consensus 11 LcEDeD~~IR~qAIk~Lp~lck~~~--e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~t 75 (343)
+-.|+-+-+|+.|++.+--+||-.+ ...++|-|+|.||..--+..=+..+-.+|.+..+.||+-+
T Consensus 499 l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~ 565 (1005)
T KOG2274|consen 499 LTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA 565 (1005)
T ss_pred hccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh
Confidence 3455566789999999999997543 3489999999998764444446688889999999999643
No 141
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=21.01 E-value=6.9e+02 Score=23.34 Aligned_cols=63 Identities=25% Similarity=0.294 Sum_probs=48.1
Q ss_pred hccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHH-HHHHHHHHHHhhChhh
Q psy17474 11 LCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELS-VVQSSIMTLCKNDIKG 74 (343)
Q Consensus 11 LcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~-~V~~sL~~Llk~Dpk~ 74 (343)
+-+..++......++.||.+|+.+...++-+..+|+.|..++. .+.. +...-+..+++.++..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~-~~~~~~~~rLl~~lw~~~~r~ 72 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGS-LELRYVALRLLTLLWKANDRH 72 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHHhCchH
Confidence 6788899999999999999999865888899999998877665 4443 3344444667777754
No 142
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=20.73 E-value=1.1e+02 Score=21.43 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=19.2
Q ss_pred HHHHHHHhhccccchhHHHHHhhh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKD 26 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~ 26 (343)
.-++++..-+.|+++.||..|+.-
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 345677778999999999998753
No 143
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=20.64 E-value=4.2e+02 Score=26.52 Aligned_cols=87 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred chhhHhHH-----------HHhhccCChhHHHHHHHHHH---HHHhhChhhhHHHHHHhhhcC---------CchHHHHH
Q psy17474 38 TPKVTDIL-----------GQLLQTNDTTELSVVQSSIM---TLCKNDIKGALKGMFNLIEIS---------NGPVREKC 94 (343)
Q Consensus 38 v~kiaDVL-----------~QLLqtdd~~E~~~V~~sL~---~Llk~Dpk~tL~~lf~qI~~~---------de~vRe~~ 94 (343)
+.++|||| ..-|...||.-...|++-+- .|+++|+++ +..+|..+.+. ++.+|+++
T Consensus 201 ~~~~a~ILN~~~~~~~~~il~~L~~~dp~la~~Ir~~mF~Fedl~~ld~~~-l~~llrev~~~~L~~ALkga~~e~~~~i 279 (338)
T TIGR00207 201 VRAVAEIINLMDRKTEKTIITSLEEFDPELAEEIKKEMFVFEDIVDLDDRS-IQRVLREVDSEDLLLALKGAEQPLREKF 279 (338)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHhCHHHHHHHHHHccCHHHHhcCCHHH-HHHHHHhCCHHHHHHHHCcCCHHHHHHH
Q ss_pred HHHhhHhhhhhhhhhchH----------HHHHHHHHHHHHh
Q psy17474 95 LRFLVPKIKMLGRDIMTK----------EIEEYTIDQCKKI 125 (343)
Q Consensus 95 lkFl~~kl~~l~~~ll~~----------E~E~~i~~~ikKv 125 (343)
++=++.+....-.+.+.. +++.-|+..+++.
T Consensus 280 l~nmS~R~a~~l~ee~~~~GpV~~sdvE~Aq~~Iv~~~r~L 320 (338)
T TIGR00207 280 LNNMSQRAAEILKEDMEFLGPVRLKDVEEAQKKIVSIVRKL 320 (338)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
No 144
>cd06157 NR_LBD The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators. Ligand-binding domain (LBD) of nuclear receptor (NR): Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions in metazoans, from development, reproduction, to homeostasis and metabolism. The superfamily contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. The members of the family include receptors of steroids, thyroid hormone, retinoids, cholesterol by-products, lipids and heme. With few exceptions, NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD).
Probab=20.60 E-value=4.5e+02 Score=21.52 Aligned_cols=35 Identities=6% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcc-cCChhHHHHHHHHHhhccccc
Q psy17474 114 IEEYTIDQCKKILR-NVTGDEFMQIMDLLAWSRLSQ 148 (343)
Q Consensus 114 ~E~~i~~~ikKvL~-dVT~~EF~l~m~lL~~l~~~~ 148 (343)
..+.+.+.+.+... ++|.+||..+..++-.-+...
T Consensus 84 ~~~~~~~~~~~~~~L~l~~~E~~~l~ai~l~~~~~~ 119 (168)
T cd06157 84 LIRLLFEFVNPLRALKLDDEEYALLKAIVLFSPDRK 119 (168)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Confidence 33344444444443 899999999888887665554
No 145
>PHA03080 putative virion core protein; Provisional
Probab=20.49 E-value=2.2e+02 Score=29.19 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=41.6
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhc-cCChhHHHHHHHHHHHHHhhChhhhHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ-TNDTTELSVVQSSIMTLCKNDIKGALKGMF 80 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq-tdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf 80 (343)
|++||++++.||.+ ||+.-+-+|-.+ -|=|-+.-. --+..|+.-++|||..+=+- .++|
T Consensus 50 esiiNsIy~~ces~---i~v~~~~~l~~i-----------L~~Lr~~~~yV~n~~EF~rLynsL~RfTH~------~SFF 109 (366)
T PHA03080 50 ESIINSIYNCCESN---IRITDIEHLKKI-----------LDNLRRHSVYVCNSTEFWRLYNSLYRFTHC------KSFF 109 (366)
T ss_pred HHHHHHHHHHHHhc---CCCCCHHHHHHH-----------HHHhcccceeecChHHHHHHHHHHHHHhhh------HHHH
Confidence 56788888888876 443332222222 111111111 35678999999999986442 4566
Q ss_pred HhhhcCCchHHHHHHHHhh
Q psy17474 81 NLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 81 ~qI~~~de~vRe~~lkFl~ 99 (343)
.-.. +.+|--+-++|.
T Consensus 110 ~tC~---pTI~aTLaTLiT 125 (366)
T PHA03080 110 NTCM---PTIRATLATLIT 125 (366)
T ss_pred HHhH---HHHHHHHHHHHH
Confidence 6553 455544444443
No 146
>cd08305 Pyrin Pyrin: a protein-protein interaction domain. The Pyrin domain (or PYD), also called DAPIN or PAAD, is a subfamily of the Death Domain (DD) superfamily and it functions in several signaling pathways. The Pyrin domain is found at the N-terminus of a variety of proteins and serves as a linker that recruits other domains into signaling complexes. Pyrin-containing proteins include NALPs, ASC (Apoptosis-associated speck-like protein containing a CARD), and the interferon-inducible p200 (IFI-200) family of proteins which includes the human IFI-16, myeloid cell nuclear differentiation antigen (MNDA) and absent in melanoma (AIM) 2. NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case
Probab=20.41 E-value=1.4e+02 Score=23.41 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=28.7
Q ss_pred HHhcccCChhHHHHHHHHHhhc-ccc---cChHHHHHHHHHHHHHh
Q psy17474 123 KKILRNVTGDEFMQIMDLLAWS-RLS---QSLAGQKELMEIIKHHA 164 (343)
Q Consensus 123 kKvL~dVT~~EF~l~m~lL~~l-~~~---~t~~g~qeLv~li~eqa 164 (343)
.+.|+..+..||..|..+|..- +.. +-...+.+|++++.++.
T Consensus 2 l~~Le~L~~~efk~FK~~L~~~~~~~~~~~~~~a~~~la~lL~~~y 47 (73)
T cd08305 2 LTGLENITDEELKRFKSLLANDLFLETKAQLEYTRIQIADLMEQKF 47 (73)
T ss_pred HHHHHHcCHHHHHHHHHHHHhcCCCCCcccccccHHHHHHHHHHHc
Confidence 3568899999999999999962 221 11111668888888763
No 147
>KOG2274|consensus
Probab=20.36 E-value=1.4e+03 Score=26.70 Aligned_cols=87 Identities=20% Similarity=0.287 Sum_probs=62.1
Q ss_pred HHHHHhhcCCCCCCCCchhhHHHHHHHHH----------HHHhhhhccchhhhhcC--CCcchhHHHHHHHhhcCCchhH
Q psy17474 233 LKLLAELSPFYVVHEDTPQHITSIVDCLF----------VRKQAIKDLPSLCKENN--EYTPKVTDILGQLLQTNDTTEL 300 (343)
Q Consensus 233 LK~lAEls~~~~~~e~~pqllesi~d~LL----------~r~qAik~lp~~c~~~~--~~~~~v~diL~Qll~~d~~~e~ 300 (343)
++.+-=++-|....-.+|+.+....++.+ +|+.|++.+--.|+-.. +..|.|-|+|.|+..--+..=+
T Consensus 468 ~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl 547 (1005)
T KOG2274|consen 468 LRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVL 547 (1005)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHH
Confidence 34444444555544446777776666665 78888888878885321 2589999999998876666667
Q ss_pred HHHHHHHHHHHhhchhhhh
Q psy17474 301 SVVQSSIMTLCKNDIKVLS 319 (343)
Q Consensus 301 ~~v~~sl~~l~~~d~~~~~ 319 (343)
+.+-.+|.+-.+.||+-+-
T Consensus 548 ~llmE~Ls~vv~~dpef~a 566 (1005)
T KOG2274|consen 548 VLLMEALSSVVKLDPEFAA 566 (1005)
T ss_pred HHHHHHHHHHhccChhhhh
Confidence 7888999999999998653
Done!