Query psy17474
Match_columns 343
No_of_seqs 99 out of 105
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 23:27:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u0r_A Apoptosis inhibitor 5; 100.0 2.7E-83 9.1E-88 646.0 27.7 264 2-274 64-327 (507)
2 3u0r_A Apoptosis inhibitor 5; 99.7 2.6E-17 8.9E-22 166.6 6.8 71 250-322 60-139 (507)
3 4fdd_A Transportin-1; heat rep 98.3 3.6E-05 1.2E-09 80.0 20.0 298 3-313 128-472 (852)
4 4fdd_A Transportin-1; heat rep 98.1 0.00022 7.6E-09 74.1 20.0 289 4-312 175-512 (852)
5 1qgr_A Protein (importin beta 98.1 0.001 3.4E-08 67.9 24.1 294 3-312 128-479 (876)
6 2vgl_B AP-2 complex subunit be 98.0 0.0007 2.4E-08 68.4 22.5 87 227-317 333-424 (591)
7 1b3u_A Protein (protein phosph 98.0 0.00018 6.3E-09 69.6 17.3 287 3-312 164-470 (588)
8 4hxt_A De novo protein OR329; 98.0 0.00021 7.1E-09 61.6 15.4 96 4-99 3-111 (252)
9 1b3u_A Protein (protein phosph 97.9 0.0003 1E-08 68.1 16.6 285 4-313 11-311 (588)
10 2jdq_A Importin alpha-1 subuni 97.7 0.001 3.5E-08 62.4 16.6 294 3-316 64-394 (450)
11 2bpt_A Importin beta-1 subunit 97.7 0.0054 1.8E-07 62.4 22.3 295 4-316 180-533 (861)
12 1ibr_B P95, importin beta-1 su 97.7 0.0059 2E-07 57.1 20.3 263 3-279 128-441 (462)
13 1wa5_B Importin alpha subunit; 97.6 0.0012 4E-08 64.8 15.5 293 4-316 131-461 (530)
14 2z6g_A B-catenin; FULL-length, 97.6 0.0046 1.6E-07 64.9 20.7 288 3-313 150-470 (780)
15 2jdq_A Importin alpha-1 subuni 97.6 0.0023 8E-08 59.9 16.7 291 4-311 21-346 (450)
16 1u6g_C TIP120 protein, CAND1; 97.6 0.019 6.4E-07 62.2 25.3 295 5-317 376-726 (1230)
17 1wa5_B Importin alpha subunit; 97.6 0.0015 5.3E-08 64.0 15.5 292 4-312 88-412 (530)
18 2bpt_A Importin beta-1 subunit 97.6 0.034 1.2E-06 56.5 25.6 294 3-312 134-482 (861)
19 2vgl_B AP-2 complex subunit be 97.5 0.0023 7.9E-08 64.6 16.8 269 4-297 87-367 (591)
20 4b8j_A Importin subunit alpha- 97.5 0.0013 4.3E-08 64.3 14.2 292 4-316 118-447 (528)
21 1w63_A Adapter-related protein 97.5 0.0054 1.9E-07 62.5 19.4 70 4-73 143-212 (618)
22 1qgr_A Protein (importin beta 97.4 0.034 1.2E-06 56.6 24.1 297 4-311 367-721 (876)
23 4b8j_A Importin subunit alpha- 97.4 0.0052 1.8E-07 59.9 17.4 289 3-313 74-401 (528)
24 1jdh_A Beta-catenin; beta-cate 97.3 0.019 6.6E-07 55.0 19.7 286 3-312 17-336 (529)
25 4hxt_A De novo protein OR329; 97.3 0.0052 1.8E-07 52.7 14.2 98 3-100 44-154 (252)
26 2z6h_A Catenin beta-1, beta-ca 97.3 0.025 8.4E-07 57.2 21.3 286 4-313 15-334 (644)
27 2vgl_A Adaptor protein complex 97.2 0.03 1E-06 57.5 21.0 282 4-315 147-473 (621)
28 1u6g_C TIP120 protein, CAND1; 97.2 0.081 2.8E-06 57.2 24.4 264 2-315 5-287 (1230)
29 4db6_A Armadillo repeat protei 97.2 0.0066 2.3E-07 51.4 12.8 98 3-100 54-164 (210)
30 4db8_A Armadillo-repeat protei 97.0 0.018 6.1E-07 50.0 14.4 98 3-100 54-164 (252)
31 4db6_A Armadillo repeat protei 97.0 0.016 5.5E-07 49.0 13.6 97 4-100 13-122 (210)
32 2qk2_A LP04448P; mini spindles 97.0 0.02 6.7E-07 50.5 14.4 128 3-131 56-190 (242)
33 1ibr_B P95, importin beta-1 su 96.9 0.19 6.4E-06 46.8 21.7 297 6-313 93-438 (462)
34 3ul1_B Importin subunit alpha- 96.9 0.21 7.2E-06 49.3 23.0 287 4-315 101-433 (510)
35 1xqr_A HSPBP1 protein; armadil 96.9 0.013 4.5E-07 55.1 13.0 139 3-142 124-283 (296)
36 3ltj_A Alpharep-4; protein eng 96.6 0.079 2.7E-06 44.7 15.2 89 3-100 14-102 (201)
37 1w63_A Adapter-related protein 96.6 0.03 1E-06 57.1 14.3 94 4-100 108-205 (618)
38 3o2t_A Symplekin; heat repeat, 96.5 0.0091 3.1E-07 59.1 9.9 101 2-102 62-182 (386)
39 3gs3_A Symplekin, LD45768P; he 96.5 0.014 4.7E-07 54.7 10.6 96 2-100 52-170 (257)
40 3tpo_A Importin subunit alpha- 96.5 0.23 7.9E-06 49.0 19.7 287 4-315 120-452 (529)
41 4db8_A Armadillo-repeat protei 96.5 0.008 2.8E-07 52.2 8.0 97 3-99 138-247 (252)
42 3ltj_A Alpharep-4; protein eng 96.4 0.02 6.9E-07 48.4 10.2 89 3-100 76-164 (201)
43 3ltm_A Alpha-REP4; protein eng 96.4 0.019 6.6E-07 48.9 10.0 89 3-100 81-169 (211)
44 1te4_A Conserved protein MTH18 96.3 0.023 7.8E-07 45.8 9.2 26 5-30 14-39 (131)
45 3ltm_A Alpha-REP4; protein eng 96.2 0.054 1.9E-06 46.1 11.5 130 3-142 50-184 (211)
46 1oyz_A Hypothetical protein YI 96.1 0.14 4.9E-06 45.4 14.2 97 2-99 53-153 (280)
47 2qk2_A LP04448P; mini spindles 96.0 0.29 9.8E-06 43.0 15.6 43 8-50 20-66 (242)
48 1oyz_A Hypothetical protein YI 95.6 0.067 2.3E-06 47.6 9.8 93 4-99 91-184 (280)
49 2z6h_A Catenin beta-1, beta-ca 95.3 1.1 3.8E-05 45.1 18.9 97 4-100 225-333 (644)
50 2vgl_A Adaptor protein complex 95.2 3 0.0001 42.7 21.9 273 4-296 112-417 (621)
51 1xqr_A HSPBP1 protein; armadil 95.1 0.26 8.9E-06 46.2 12.7 97 4-100 82-193 (296)
52 3tpo_A Importin subunit alpha- 95.0 0.51 1.7E-05 46.6 14.9 99 2-100 250-361 (529)
53 3now_A UNC-45 protein, SD10334 94.9 0.4 1.4E-05 51.5 14.9 265 6-313 52-357 (810)
54 2qk1_A Protein STU2; STU2P, XM 94.5 0.51 1.7E-05 42.7 12.7 127 3-129 60-203 (249)
55 3ul1_B Importin subunit alpha- 94.4 0.52 1.8E-05 46.4 13.6 99 2-100 231-342 (510)
56 2z6g_A B-catenin; FULL-length, 94.4 5.7 0.00019 41.5 23.5 96 3-99 192-301 (780)
57 3opb_A SWI5-dependent HO expre 93.7 0.54 1.9E-05 50.4 12.7 137 3-140 606-771 (778)
58 1jdh_A Beta-catenin; beta-cate 93.5 0.4 1.4E-05 45.8 10.4 98 3-100 227-336 (529)
59 1te4_A Conserved protein MTH18 92.5 0.13 4.4E-06 41.3 4.6 88 3-99 42-129 (131)
60 2x19_B Importin-13; nuclear tr 92.2 9.8 0.00034 39.7 19.5 127 172-312 460-599 (963)
61 2x1g_F Cadmus; transport prote 91.5 13 0.00044 39.0 19.6 220 5-245 507-764 (971)
62 2qk1_A Protein STU2; STU2P, XM 90.7 3 0.0001 37.6 12.0 109 4-112 105-229 (249)
63 3l9t_A Putative uncharacterize 90.2 0.38 1.3E-05 44.9 5.7 76 2-77 138-215 (240)
64 1xm9_A Plakophilin 1; armadill 90.1 0.96 3.3E-05 44.0 8.8 96 4-99 3-112 (457)
65 3now_A UNC-45 protein, SD10334 88.0 1.1 3.9E-05 48.0 8.2 70 3-72 665-740 (810)
66 3tjz_B Coatomer subunit gamma; 87.5 6.8 0.00023 37.9 12.7 96 47-152 75-172 (355)
67 2x1g_F Cadmus; transport prote 87.1 32 0.0011 36.0 19.8 128 173-312 476-615 (971)
68 3gs3_A Symplekin, LD45768P; he 87.0 1.7 5.9E-05 40.4 7.9 75 227-309 30-113 (257)
69 3ibv_A Exportin-T; karyopherin 85.7 14 0.00047 40.1 15.2 210 3-215 699-944 (980)
70 2x19_B Importin-13; nuclear tr 85.5 38 0.0013 35.3 23.2 65 3-70 490-557 (963)
71 3o2t_A Symplekin; heat repeat, 84.4 1.7 5.9E-05 42.9 6.8 84 227-311 40-128 (386)
72 3nmw_A APC variant protein; AR 82.8 1.5 5.3E-05 41.9 5.6 69 4-72 264-337 (354)
73 3tt9_A Plakophilin-2; cell adh 81.2 7.2 0.00025 35.4 9.2 93 4-96 9-117 (233)
74 3tjz_B Coatomer subunit gamma; 80.5 5.9 0.0002 38.4 8.8 49 6-54 142-190 (355)
75 3b2a_A TON_1937, putative unch 80.3 15 0.00052 34.6 11.2 97 2-100 114-215 (265)
76 3nmw_A APC variant protein; AR 78.2 4.6 0.00016 38.6 7.2 97 3-99 214-330 (354)
77 3nmz_A APC variant protein; pr 77.4 2.7 9.2E-05 41.9 5.5 69 4-72 380-453 (458)
78 1xm9_A Plakophilin 1; armadill 75.7 8.7 0.0003 37.2 8.5 66 4-69 45-116 (457)
79 2db0_A 253AA long hypothetical 73.3 58 0.002 30.1 14.6 120 3-128 32-155 (253)
80 3nmz_A APC variant protein; pr 69.8 10 0.00034 37.7 7.5 66 3-68 330-407 (458)
81 2of3_A ZYG-9; multifunctional 69.6 72 0.0025 29.6 13.4 101 154-279 131-240 (266)
82 3l6x_A Catenin delta-1; cateni 69.3 12 0.00042 38.5 8.2 93 3-95 48-155 (584)
83 2of3_A ZYG-9; multifunctional 64.9 82 0.0028 29.2 12.2 120 7-141 136-261 (266)
84 3tt9_A Plakophilin-2; cell adh 64.8 10 0.00035 34.4 5.9 52 4-55 53-110 (233)
85 4ady_A RPN2, 26S proteasome re 64.6 5.7 0.00019 43.6 4.8 48 3-50 647-695 (963)
86 3grl_A General vesicular trans 64.4 20 0.00067 37.8 8.6 98 3-100 122-238 (651)
87 2b6c_A Hypothetical protein EF 64.2 26 0.00087 31.0 8.3 91 4-98 125-215 (220)
88 4ady_A RPN2, 26S proteasome re 63.2 14 0.00049 40.5 7.6 155 2-161 576-746 (963)
89 1lsh_A Lipovitellin (LV-1N, LV 63.0 1.8E+02 0.006 31.8 21.5 247 38-317 287-545 (1056)
90 4ffb_C Protein STU2; tubulin f 60.2 70 0.0024 28.3 10.6 94 13-107 113-216 (278)
91 2db0_A 253AA long hypothetical 57.3 52 0.0018 30.4 9.0 94 6-100 72-170 (253)
92 3fga_B Serine/threonine-protei 57.3 1.5E+02 0.0053 29.2 14.8 62 246-312 94-158 (403)
93 1wa5_C Importin alpha RE-expor 56.5 2E+02 0.0068 30.3 15.1 69 2-70 495-583 (960)
94 3m1i_C Exportin-1; heat repeat 56.1 1.1E+02 0.0039 32.5 13.0 235 4-258 345-635 (1049)
95 3l6x_A Catenin delta-1; cateni 55.8 36 0.0012 35.1 8.7 66 4-69 91-163 (584)
96 3qml_C Protein SLS1, nucleotid 52.0 1.7E+02 0.0058 28.1 13.9 174 13-189 80-299 (315)
97 2h7b_A Core-binding factor, ML 51.6 19 0.00064 29.6 4.6 43 92-136 7-50 (105)
98 3l9t_A Putative uncharacterize 50.1 1.3E+02 0.0043 27.9 10.6 88 5-100 73-165 (240)
99 4hat_C Exportin-1; heat repeat 50.0 1.1E+02 0.0037 33.4 11.8 121 3-133 495-624 (1023)
100 2p6v_A Transcription initiatio 49.0 28 0.00096 29.0 5.3 44 92-136 20-65 (114)
101 3jxy_A Alkylpurine DNA glycosy 45.6 59 0.002 28.9 7.5 92 4-99 132-223 (232)
102 3m1i_C Exportin-1; heat repeat 42.3 53 0.0018 35.1 7.7 71 2-72 539-621 (1049)
103 4hat_C Exportin-1; heat repeat 41.4 3.8E+02 0.013 29.1 16.6 78 172-262 206-286 (1023)
104 1lsh_A Lipovitellin (LV-1N, LV 40.7 81 0.0028 34.4 8.9 96 4-107 472-576 (1056)
105 3b2a_A TON_1937, putative unch 39.5 2.5E+02 0.0085 26.4 11.3 117 2-122 32-159 (265)
106 3grl_A General vesicular trans 39.0 76 0.0026 33.4 8.0 99 2-100 20-148 (651)
107 3gvo_A Pumilio 2, pumilio homo 37.5 1.5E+02 0.0052 27.5 9.3 78 25-110 26-108 (351)
108 1lrv_A LRV, leucine-rich repea 33.8 29 0.00099 31.6 3.5 22 7-28 126-147 (244)
109 2vj4_A Protein MXIC, MXIC; sec 29.4 3.7E+02 0.013 25.4 10.9 28 126-153 169-196 (294)
110 3d9j_A RNA-binding protein 16; 27.2 2.3E+02 0.008 23.5 7.9 38 19-56 21-58 (145)
111 3opb_A SWI5-dependent HO expre 26.6 62 0.0021 34.7 5.0 69 4-73 458-535 (778)
112 2do9_A NALP10, nacht-, LRR- an 24.1 23 0.00078 29.1 0.9 32 114-145 12-43 (115)
113 1sz9_A PCF11 protein; RNA poly 24.0 3.1E+02 0.011 22.7 10.0 100 20-123 23-136 (144)
114 1lrv_A LRV, leucine-rich repea 23.8 60 0.0021 29.4 3.8 63 10-96 57-120 (244)
115 3ibv_A Exportin-T; karyopherin 23.3 7.2E+02 0.025 26.7 16.9 79 86-169 713-796 (980)
116 2kn6_A Apoptosis-associated sp 23.0 98 0.0034 27.9 5.0 45 119-163 25-79 (215)
117 3s4w_B Protein FACD2, fanconi 22.8 5.9E+02 0.02 29.0 12.1 45 6-52 160-204 (1323)
118 2eqx_A Kelch repeat and BTB do 22.5 1.6E+02 0.0056 22.6 5.6 70 86-161 24-94 (105)
119 3k62_A FEM-3 mRNA-binding fact 22.4 5.3E+02 0.018 24.8 12.1 78 25-107 29-119 (412)
120 2jtt_C Calcyclin-binding prote 22.3 62 0.0021 21.5 2.6 29 71-99 3-32 (35)
121 4fu3_A Regulation of nuclear P 22.2 89 0.003 25.1 4.2 48 2-54 6-53 (135)
122 3qf2_A Nacht, LRR and PYD doma 21.4 2E+02 0.0067 23.1 6.0 45 120-164 6-60 (110)
123 1us7_B HSP90 CO-chaperone CDC3 20.3 2.7E+02 0.0094 26.0 7.5 32 57-88 94-133 (265)
No 1
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=100.00 E-value=2.7e-83 Score=646.02 Aligned_cols=264 Identities=42% Similarity=0.719 Sum_probs=255.5
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFN 81 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~ 81 (343)
|+||||++|||||||++||+||||+||++||+ +|++||||||+|||||||++|+.+|||||++|||+|||+||+|+|+
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~ 141 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFS 141 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 78999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHHHHHHH
Q psy17474 82 LIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIK 161 (343)
Q Consensus 82 qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~ 161 (343)
||.+|||.+|||+|+||++|+++++.+++++|+|++|+++|||+|+|||++||++||++|+++++|+|++|||+|++++.
T Consensus 142 ~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~ 221 (507)
T 3u0r_A 142 QILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVA 221 (507)
T ss_dssp HHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHH
T ss_pred HHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcC
Q psy17474 162 HHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP 241 (343)
Q Consensus 162 eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~ 241 (343)
+||+|+++|+|+|+|+|||+|+|+++|+||||+|++||+||+|||++|||+|++|++++ ++++.||++||++|||||
T Consensus 222 eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~---~~~~~kL~LLK~lAE~s~ 298 (507)
T 3u0r_A 222 EQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPV---EGLDIQLEVLKLLAEMSS 298 (507)
T ss_dssp HHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC-----CCCHHHHHHHHHHHHHT
T ss_pred HHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccc---cchHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999975 344699999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhhhhccchhh
Q psy17474 242 FYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLC 274 (343)
Q Consensus 242 ~~~~~e~~pqllesi~d~LL~r~qAik~lp~~c 274 (343)
|||++++++++++++|+.|+.+++ +|+..
T Consensus 299 ~~~~~e~a~~~l~~iy~~L~~ymP----~~p~~ 327 (507)
T 3u0r_A 299 FCGDMEKLETNLRKLFDKLLEYMP----LPPEE 327 (507)
T ss_dssp TCCCCTTHHHHHHHHHHHHHTTSC----CCC--
T ss_pred CCCccchHHHHHHHHHHHHHHHCC----CCccc
Confidence 999999999999999999999998 66654
No 2
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=99.68 E-value=2.6e-17 Score=166.63 Aligned_cols=71 Identities=38% Similarity=0.610 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHH---------HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhh
Q psy17474 250 PQHITSIVDCLF---------VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSL 320 (343)
Q Consensus 250 pqllesi~d~LL---------~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~~~~~ 320 (343)
|.+.+.++|+++ ||+||||+||.+||+ +|++||||||+|||||||+.|+++|||||++||++|||.|+.
T Consensus 60 P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~ 137 (507)
T 3u0r_A 60 PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLG 137 (507)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHH
Confidence 555555666665 999999999999999 999999999999999999999999999999999999999987
Q ss_pred hc
Q psy17474 321 SL 322 (343)
Q Consensus 321 ~~ 322 (343)
++
T Consensus 138 ~l 139 (507)
T 3u0r_A 138 GL 139 (507)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.30 E-value=3.6e-05 Score=80.01 Aligned_cols=298 Identities=11% Similarity=0.102 Sum_probs=175.4
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcc---------hhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYT---------PKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK 73 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v---------~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk 73 (343)
+.+..++.++.++|..+|..|+..|-.+|++.++.. ..+...|.++|++.++.=+...-++|..+++..++
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 467888899999999999999999999999988763 44556667777766654455566677766665553
Q ss_pred -------hhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhccc
Q psy17474 74 -------GALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRL 146 (343)
Q Consensus 74 -------~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~ 146 (343)
..+..++..+..+++.+|..++.-+.. +.....+.+.+-++. ++..+.+.++|....=...-++++..+.-
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~-l~~~~~~~~~~~l~~-l~~~l~~~~~~~~~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVM-LLEVRMDRLLPHMHN-IVEYMLQRTQDQDENVALEACEFWLTLAE 285 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-HHHHCHHHHGGGHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHhCHHHHHHHHHH-HHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 345556655555677899888887763 433334445554444 45556667776432222334444444321
Q ss_pred ccC-----hHHHHHHHHHHHHHhcc--------CCC--CCCCCch--hhhhHHhhHHhhhhhhccCCCChhHHHHHHHhh
Q psy17474 147 SQS-----LAGQKELMEIIKHHAEL--------SKS--FDPSNPE--DVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQV 209 (343)
Q Consensus 147 ~~t-----~~g~qeLv~li~eqa~L--------d~~--f~~sD~e--~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~v 209 (343)
... .+.-..++..+...... +.+ -+..|.+ .--+.-.+...++..++...+ ...+..+...+
T Consensus 286 ~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l 364 (852)
T 4fdd_A 286 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLL 364 (852)
T ss_dssp STTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHH
Confidence 110 11235677777665420 011 1111111 111223344555555554332 23333333333
Q ss_pred cCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH---------HHHhhhhccchhhhhc---
Q psy17474 210 LPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDLPSLCKEN--- 277 (343)
Q Consensus 210 lP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL---------~r~qAik~lp~~c~~~--- 277 (343)
...++. .....|...+..+..++..|+. ....+++.++..++ +|..|...+..+|...
T Consensus 365 ~~~l~~--------~~~~~R~aa~~alg~i~~~~~~--~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 434 (852)
T 4fdd_A 365 KELLFH--------HEWVVKESGILVLGAIAEGCMQ--GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ 434 (852)
T ss_dssp HHHHTC--------SSHHHHHHHHHHHHHTTTTTHH--HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHHhcC--------CCHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 222221 1235788889999999988863 23345555555555 8999999999988753
Q ss_pred --CCCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q psy17474 278 --NEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKN 313 (343)
Q Consensus 278 --~~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~ 313 (343)
..|...+...|.+.|..+++.-...+-++|..+.+.
T Consensus 435 ~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 435 PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 346777778888888776665556666666666643
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.07 E-value=0.00022 Score=74.12 Aligned_cols=289 Identities=11% Similarity=0.098 Sum_probs=160.0
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCC----cchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhh---hH
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNE----YTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKG---AL 76 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e----~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~---tL 76 (343)
.+..++.+..|++..||..|++.|-.+++..++ +++.+...|.++++.+++.-+..+-++|..+.+..|+- .+
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l 254 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM 254 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 455667778899999999999999999876553 44566677778888877777778888999998887742 33
Q ss_pred HHHHH----hhhcCCchHHHHHHHHhhHhhhh-hhhhhchHHHHHHHHHHHHHhc-----------ccCChhHH------
Q psy17474 77 KGMFN----LIEISNGPVREKCLRFLVPKIKM-LGRDIMTKEIEEYTIDQCKKIL-----------RNVTGDEF------ 134 (343)
Q Consensus 77 ~~lf~----qI~~~de~vRe~~lkFl~~kl~~-l~~~ll~~E~E~~i~~~ikKvL-----------~dVT~~EF------ 134 (343)
..++. .+...++.+|..++.|+..=... .....+.+-....+ ..+.+.| +|...++.
T Consensus 255 ~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~-p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~ 333 (852)
T 4fdd_A 255 HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI-PVLVNGMKYSDIDIILLKGDVEGGSGGDDTIS 333 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHH-HHHHHHTSCCHHHHHHHHC------------C
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-HHHHHHcCCcHhHHHHhcCCcccccccccccc
Confidence 33333 23345778999999998752221 11122233333333 2233333 22101110
Q ss_pred -----HHHHHHHhhcccccChHHHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCC--hhHHHHHHH
Q psy17474 135 -----MQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPS--TPFVSYLCE 207 (343)
Q Consensus 135 -----~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~S--t~fv~y~~~ 207 (343)
..-...|..+-..-...-...++.++.+... ..++. ...-.-.|+--++.+... .+++..+..
T Consensus 334 ~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~------~~~~~----~R~aa~~alg~i~~~~~~~~~~~l~~~l~ 403 (852)
T 4fdd_A 334 DWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF------HHEWV----VKESGILVLGAIAEGCMQGMIPYLPELIP 403 (852)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT------CSSHH----HHHHHHHHHHHTTTTTHHHHGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc------CCCHH----HHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 0011111111100000112345555554321 11222 222222333333333321 245555555
Q ss_pred hhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH---------HHHhhhhccchhhhhcC
Q psy17474 208 QVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDLPSLCKENN 278 (343)
Q Consensus 208 ~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL---------~r~qAik~lp~~c~~~~ 278 (343)
.+++.+++= ....|-.....+..++.+.+... ....+..++..++ +|..|...|-.+|...+
T Consensus 404 ~l~~~l~d~--------~~~Vr~~a~~~l~~l~~~~~~~~-~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 404 HLIQCLSDK--------KALVRSITCWTLSRYAHWVVSQP-PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHTTCS--------SHHHHHHHHHHHHHTHHHHHHSC-TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHcCCC--------CHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 555555431 22356666677777666554321 2334444444443 89999999999997654
Q ss_pred C----CcchhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q psy17474 279 E----YTPKVTDILGQLLQTNDTTELSVVQSSIMTLCK 312 (343)
Q Consensus 279 ~----~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~ 312 (343)
. |++.+...|.++++..+.....++-.++.++.+
T Consensus 475 ~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 475 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 3 678888888888888777766666666666653
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.06 E-value=0.001 Score=67.88 Aligned_cols=294 Identities=10% Similarity=0.091 Sum_probs=156.8
Q ss_pred HHHHHHHhhcccc--chhHHHHHhhhhhhhhhcc-----CCcchhhHhHHHHhhccCC--hhHHHHHHHHHHHHHhhCh-
Q psy17474 3 QAIEALFDLCEDE--DVSVRKQAIKDLPSLCKEN-----NEYTPKVTDILGQLLQTND--TTELSVVQSSIMTLCKNDI- 72 (343)
Q Consensus 3 ~Ai~a~lDLcEDe--D~~IR~qAIk~Lp~lck~~-----~e~v~kiaDVL~QLLqtdd--~~E~~~V~~sL~~Llk~Dp- 72 (343)
+.+..++.++.++ |..+|..|++.|..+|++. ..+.+.+...|.+.|+.++ +.-+...=++|..++..-+
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899998 9999999999999999874 4567888888999998774 3334555566666543211
Q ss_pred ----h----hhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhc
Q psy17474 73 ----K----GALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWS 144 (343)
Q Consensus 73 ----k----~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l 144 (343)
. ..+..++..+...++.+|..+++++..-+.. ....+.+.+...+...+.+.+.+....=....++++..+
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL-YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-SGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1 1344455544445678999998888754433 233344444422334444444443221111122222211
Q ss_pred cc-----------------------ccChHH-HHHHHHHHHHHhc-cCCCCCCCCchhhhhHHhhHHhhhhhhccCCCCh
Q psy17474 145 RL-----------------------SQSLAG-QKELMEIIKHHAE-LSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPST 199 (343)
Q Consensus 145 ~~-----------------------~~t~~g-~qeLv~li~eqa~-Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St 199 (343)
.. +....+ -++++..+.+... .+.+ ..|.+ . +.-.+...++..++...+ .
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d--~~~~~-~-~~r~~a~~~l~~l~~~~~-~ 361 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN--DDDDD-W-NPCKAAGVCLMLLATCCE-D 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSS--CCTTC-C-CHHHHHHHHHHHHHHHHG-G
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccc--ccccc-c-HHHHHHHHHHHHHHHHCc-H
Confidence 10 011111 1455555554432 1111 11111 1 112233333333333222 2
Q ss_pred hHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH---------HHHhhhhcc
Q psy17474 200 PFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDL 270 (343)
Q Consensus 200 ~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL---------~r~qAik~l 270 (343)
..+..+...+...+.+ .....|-..+..+..++..+++. ....++..++..++ +|..|...|
T Consensus 362 ~~~~~~l~~l~~~l~~--------~~~~~r~~a~~~l~~i~~~~~~~-~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l 432 (876)
T 1qgr_A 362 DIVPHVLPFIKEHIKN--------PDWRYRDAAVMAFGCILEGPEPS-QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432 (876)
T ss_dssp GGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCHH-HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccC--------CChHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3343333333333332 12246788899999998877521 12234444444443 899999999
Q ss_pred chhhhhc------CCCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q psy17474 271 PSLCKEN------NEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCK 312 (343)
Q Consensus 271 p~~c~~~------~~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~ 312 (343)
-.+|... ..|++.+...|...|..+ +.=...+-++|..+..
T Consensus 433 ~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 433 GRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 9999874 356777777777777543 2212233345555543
No 6
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.04 E-value=0.0007 Score=68.43 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH-----HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHH
Q psy17474 227 DNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF-----VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELS 301 (343)
Q Consensus 227 ~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL-----~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~ 301 (343)
..|.+-|..+..++. .++.+..+..+.+-+- +|+.|++.+-.+|...+.....+.|+|.++|...+..-..
T Consensus 333 ~Ir~~al~~L~~l~~----~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~ 408 (591)
T 2vgl_B 333 YVKLEKLDIMIRLAS----QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQ 408 (591)
T ss_dssp HHHHHHHHHHHHTCC----SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHCC----hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHH
Confidence 456666666666643 2233333333332211 7889999999999866555688899999999988776666
Q ss_pred HHHHHHHHHHhhchhh
Q psy17474 302 VVQSSIMTLCKNDIKV 317 (343)
Q Consensus 302 ~v~~sl~~l~~~d~~~ 317 (343)
.+-.++..|++.+|..
T Consensus 409 e~i~~l~~ii~~~p~~ 424 (591)
T 2vgl_B 409 EAIVVIRDIFRKYPNK 424 (591)
T ss_dssp HHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHCcch
Confidence 5556788888877753
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.03 E-value=0.00018 Score=69.59 Aligned_cols=287 Identities=13% Similarity=0.119 Sum_probs=147.1
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccC--CcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhh----H
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENN--EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGA----L 76 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~--e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~t----L 76 (343)
+.+..+..+|.|+|+.||..|.+.|..+|+.-+ .+.+.+..+|.++++.+++.-+...-.+|..+...-+... +
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345667788999999999999999999998644 3567788888888887776544555566666665544321 1
Q ss_pred HHHHHhhh-cCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChH----
Q psy17474 77 KGMFNLIE-ISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLA---- 151 (343)
Q Consensus 77 ~~lf~qI~-~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~---- 151 (343)
-.++..+. ..+..+|..+.+.+..=....+.+.+ ...+...+.+.++|-..+--......|..+-..-...
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 319 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT----KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCREN 319 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH----HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccc----hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhh
Confidence 12222222 23447898888776543333333222 2234455566666643322222222222221111111
Q ss_pred -HHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhH
Q psy17474 152 -GQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQL 230 (343)
Q Consensus 152 -g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl 230 (343)
-...++..+..... ..++ .+ -..+-.++..++.......+ ..+++|.+..+-.. ++.+.|.
T Consensus 320 ~~~~~l~p~l~~~l~------d~~~-~v---R~~a~~~l~~l~~~~~~~~~----~~~l~p~l~~~l~d----~~~~Vr~ 381 (588)
T 1b3u_A 320 VIMSQILPCIKELVS------DANQ-HV---KSALASVIMGLSPILGKDNT----IEHLLPLFLAQLKD----ECPEVRL 381 (588)
T ss_dssp HHHHTHHHHHHHHHT------CSCH-HH---HHHHHTTGGGGHHHHCHHHH----HHHTHHHHHHHHTC----SCHHHHH
T ss_pred HHHHHHHHHHHHHhc------CCCH-HH---HHHHHHHHHHHHHHhhHhHH----HHHHHHHHHHHhCC----CchHHHH
Confidence 12345555544321 1111 22 22333344444332222222 22344432221110 1224677
Q ss_pred HHHHHHHhhcCCCCCCCCchhhHHHHHHHHH------HHHhhhhccchhhhhcCC--CcchhHHHHHHHhhcCCchhHHH
Q psy17474 231 EALKLLAELSPFYVVHEDTPQHITSIVDCLF------VRKQAIKDLPSLCKENNE--YTPKVTDILGQLLQTNDTTELSV 302 (343)
Q Consensus 231 ~lLK~lAEls~~~~~~e~~pqllesi~d~LL------~r~qAik~lp~~c~~~~~--~~~~v~diL~Qll~~d~~~e~~~ 302 (343)
..+..++.++...|...-.+..++.+.. ++ +|..|+.-++.++..-+. +.+.+...|.++|..++..=...
T Consensus 382 ~a~~~l~~l~~~~~~~~~~~~~lp~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 460 (588)
T 1b3u_A 382 NIISNLDCVNEVIGIRQLSQSLLPAIVE-LAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp HHHTTCHHHHHHSCHHHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 7777777777665522111222222222 22 778888888887764322 34577777888776555433344
Q ss_pred HHHHHHHHHh
Q psy17474 303 VQSSIMTLCK 312 (343)
Q Consensus 303 v~~sl~~l~~ 312 (343)
+-.++-.+.+
T Consensus 461 a~~~l~~l~~ 470 (588)
T 1b3u_A 461 ATSNLKKLVE 470 (588)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.00 E-value=0.00021 Score=61.56 Aligned_cols=96 Identities=18% Similarity=0.302 Sum_probs=73.6
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchh-----hHhHHHHhhccCChhHHHHHHHHHHHHHhhChh-----
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPK-----VTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK----- 73 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~k-----iaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk----- 73 (343)
+|..++.+..++|..+|..|.+.|-.+|.+++++... +.+.|.++|+++++.-....-++|..+...++.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6788999999999999999999999999998766544 577899999998866666666777776665453
Q ss_pred ---hhHHHHHHhhhcCCchHHHHHHHHhh
Q psy17474 74 ---GALKGMFNLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 74 ---~tL~~lf~qI~~~de~vRe~~lkFl~ 99 (343)
|.+..+...+.++++.+|+.++..|.
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~ 111 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALA 111 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45666666666666677777666655
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.92 E-value=0.0003 Score=68.06 Aligned_cols=285 Identities=13% Similarity=0.144 Sum_probs=150.4
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccC--CcchhhHhHHHHhhccCChhHH-HHHHHHHHHHHhh-Ch---hhhH
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENN--EYTPKVTDILGQLLQTNDTTEL-SVVQSSIMTLCKN-DI---KGAL 76 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~--e~v~kiaDVL~QLLqtdd~~E~-~~V~~sL~~Llk~-Dp---k~tL 76 (343)
.|+.+++-..++|..+|..|++.|..+++.-+ ...+.+...|.+.+ |+..|+ ..+-++|-.+... .+ ...+
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~~~~~~l 88 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGPEYVHCL 88 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSGGGGGGG
T ss_pred cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 47888999999999999999999999886421 12334455555544 333332 2233333222211 11 1223
Q ss_pred HHHHHhhh-cCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHH
Q psy17474 77 KGMFNLIE-ISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKE 155 (343)
Q Consensus 77 ~~lf~qI~-~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qe 155 (343)
-.++.++. .+++.+|+.+..-+..-...++.+ .....+...+++..++-...--..-..++..+-..-....+++
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~ 164 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS----DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE 164 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH----HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 33333343 356689999988777544444432 3344455555555543222222333344443332222333577
Q ss_pred HHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHH
Q psy17474 156 LMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKL 235 (343)
Q Consensus 156 Lv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~ 235 (343)
++.++.+-+. ..|+ .| -...-.++.-+........+ ...++|.+..+... ++...|...++.
T Consensus 165 l~~~l~~l~~------d~~~-~V---R~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d----~~~~vr~~a~~~ 226 (588)
T 1b3u_A 165 LRQYFRNLCS------DDTP-MV---RRAAASKLGEFAKVLELDNV----KSEIIPMFSNLASD----EQDSVRLLAVEA 226 (588)
T ss_dssp HHHHHHHHHT------CSCH-HH---HHHHHHHHHHHHHTSCHHHH----HHTHHHHHHHHHTC----SCHHHHTTHHHH
T ss_pred HHHHHHHHhC------CCCH-HH---HHHHHHHHHHHHHHhcHHhH----HHHHHHHHHHHhcC----CcHHHHHHHHHH
Confidence 8887775421 1122 22 22333444444444433322 23444443322211 122456566777
Q ss_pred HHhhcCCCCCCCCchhhHHHHHHHHH------HHHhhhhccchhhhhcCC--CcchhHHHHHHHhhcCCchhHHHHHHHH
Q psy17474 236 LAELSPFYVVHEDTPQHITSIVDCLF------VRKQAIKDLPSLCKENNE--YTPKVTDILGQLLQTNDTTELSVVQSSI 307 (343)
Q Consensus 236 lAEls~~~~~~e~~pqllesi~d~LL------~r~qAik~lp~~c~~~~~--~~~~v~diL~Qll~~d~~~e~~~v~~sl 307 (343)
++.++..+++.+..+. +-+.+..++ +|+.|++.|..++...+. +.+.+.+.|.++++.+++.-...+-.+|
T Consensus 227 l~~l~~~~~~~~~~~~-~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 305 (588)
T 1b3u_A 227 CVNIAQLLPQEDLEAL-VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305 (588)
T ss_dssp HHHHHHHSCHHHHHHH-THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHH-HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 7777666653211122 223333333 899999999999975422 3567888899999876665555566666
Q ss_pred HHHHhh
Q psy17474 308 MTLCKN 313 (343)
Q Consensus 308 ~~l~~~ 313 (343)
-.+.+.
T Consensus 306 ~~~~~~ 311 (588)
T 1b3u_A 306 KEFCEN 311 (588)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666654
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.75 E-value=0.001 Score=62.41 Aligned_cols=294 Identities=10% Similarity=0.027 Sum_probs=163.5
Q ss_pred HHHHHHHhhcccc-chhHHHHHhhhhhhhhhccCCcch-----hhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh----
Q psy17474 3 QAIEALFDLCEDE-DVSVRKQAIKDLPSLCKENNEYTP-----KVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI---- 72 (343)
Q Consensus 3 ~Ai~a~lDLcEDe-D~~IR~qAIk~Lp~lck~~~e~v~-----kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp---- 72 (343)
.++..++.+..++ +..+|..|.+.|..+|.+++++.. .....|.++|+++++.-+...-++|..+...++
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 4678888888888 889999999999999998776653 467789999999887767777778887777655
Q ss_pred ----hhhHHHHHHhhhc-CCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccc
Q psy17474 73 ----KGALKGMFNLIEI-SNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLS 147 (343)
Q Consensus 73 ----k~tL~~lf~qI~~-~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~ 147 (343)
.|.+..+...+.+ .++.+|+.++..+..=.....+.. ....-.-++..+.+.+.+-...-.......|..+-..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP-EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC-CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 3566666666664 466899988887774332110000 0001112233334455543222222234444443322
Q ss_pred cChHHHHH-----HHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHH-HhhcCCCCCCCCccc
Q psy17474 148 QSLAGQKE-----LMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLC-EQVLPKLDQIPETKD 221 (343)
Q Consensus 148 ~t~~g~qe-----Lv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~-~~vlP~l~~L~~~~~ 221 (343)
. ...++. +++.+.+.. ...|++. ....-.++-.++.+.+ .....+. ..++|.+-.+-..
T Consensus 223 ~-~~~~~~~~~~~~i~~L~~ll------~~~~~~v----~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~-- 287 (450)
T 2jdq_A 223 P-NDKIQAVIDAGVCRRLVELL------MHNDYKV----VSPALRAVGNIVTGDD--IQTQVILNCSALQSLLHLLSS-- 287 (450)
T ss_dssp S-HHHHHHHHHTTTHHHHHHHT------TCSCHHH----HHHHHHHHHHHTTSCH--HHHHHHHTTTHHHHHHHHTTC--
T ss_pred C-cHHHHHHHHcCcHHHHHHHH------CCCchhH----HHHHHHHHHHHhhCCh--HHHHHHHHCccHHHHHHHHcC--
Confidence 1 111111 222222221 1223322 2223334444444322 2222222 2344443222221
Q ss_pred ccCCchhhHHHHHHHHhhcCCCCCCCCch-----hhHHHHHHHHH-----HHHhhhhccchhhhh-cCCCcc-----hhH
Q psy17474 222 EAGGLDNQLEALKLLAELSPFYVVHEDTP-----QHITSIVDCLF-----VRKQAIKDLPSLCKE-NNEYTP-----KVT 285 (343)
Q Consensus 222 e~~~~~~kl~lLK~lAEls~~~~~~e~~p-----qllesi~d~LL-----~r~qAik~lp~~c~~-~~~~~~-----~v~ 285 (343)
.....|...+..+..++..+. +... ..++.+.+.+- +|+.|..-|-.+|.+ +++++. .+.
T Consensus 288 --~~~~vr~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i 363 (450)
T 2jdq_A 288 --PKESIKKEACWTISNITAGNR--AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI 363 (450)
T ss_dssp --SSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred --CCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 122568888899988876442 1111 22333333332 899999999999986 445444 356
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhchh
Q psy17474 286 DILGQLLQTNDTTELSVVQSSIMTLCKNDIK 316 (343)
Q Consensus 286 diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~ 316 (343)
..|.++|...++.=...+-++|..|....+.
T Consensus 364 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 364 KPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Confidence 6788899887664445555666666665543
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.70 E-value=0.0054 Score=62.39 Aligned_cols=295 Identities=12% Similarity=0.130 Sum_probs=154.1
Q ss_pred HHHHHHhhcccc--chhHHHHHhhhhhhhh---hccCC---cchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhh-
Q psy17474 4 AIEALFDLCEDE--DVSVRKQAIKDLPSLC---KENNE---YTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKG- 74 (343)
Q Consensus 4 Ai~a~lDLcEDe--D~~IR~qAIk~Lp~lc---k~~~e---~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~- 74 (343)
.+..++....|+ +..||..|++.+..+. +++.+ ...-+..+|.++++++++..+..+=..|..+....|+.
T Consensus 180 ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 259 (861)
T 2bpt_A 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259 (861)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777 7899999999988753 32211 12347788888898888877777788888888776642
Q ss_pred --hHH-HHHH----hhhcCCchHHHHHHHHhhHhhhhhhh----------------hhchHHHHHHHHHHHHHhcccCCh
Q psy17474 75 --ALK-GMFN----LIEISNGPVREKCLRFLVPKIKMLGR----------------DIMTKEIEEYTIDQCKKILRNVTG 131 (343)
Q Consensus 75 --tL~-~lf~----qI~~~de~vRe~~lkFl~~kl~~l~~----------------~ll~~E~E~~i~~~ikKvL~dVT~ 131 (343)
.+. .++. .+...++.+|..++.|+..=+..... ..+.+-. ..++..+.+.|.+...
T Consensus 260 ~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~ 338 (861)
T 2bpt_A 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNE 338 (861)
T ss_dssp HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhccc
Confidence 122 2222 23345778999999998753333210 0111112 2233334444543221
Q ss_pred ----hHHHH---HHHHHhhccc-ccChHHHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHH
Q psy17474 132 ----DEFMQ---IMDLLAWSRL-SQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVS 203 (343)
Q Consensus 132 ----~EF~l---~m~lL~~l~~-~~t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~ 203 (343)
+++.. ..+.|..+-. +. ..--..+++.+.+... ..+...-+..+ .++--.+.+.....+-.
T Consensus 339 d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~------~~~~~~r~~a~----~~l~~i~~~~~~~~~~~ 407 (861)
T 2bpt_A 339 DPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNIT------ADNWRNREAAV----MAFGSIMDGPDKVQRTY 407 (861)
T ss_dssp C-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTT------CSSHHHHHHHH----HHHHHTSSSSCHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcC------CCChhHHHHHH----HHHHHHHcCCCHHHHHH
Confidence 11111 1222221111 10 1112456666655422 22322222222 23333334433222323
Q ss_pred HHHHhhcCCCC-CCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH--------HHHhhhhccchhh
Q psy17474 204 YLCEQVLPKLD-QIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF--------VRKQAIKDLPSLC 274 (343)
Q Consensus 204 y~~~~vlP~l~-~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL--------~r~qAik~lp~~c 274 (343)
|+ .+++|.+- .+.+. .+..|-..+..++.++.+++..-..++.++.++..++ +|..|.+.|-.+|
T Consensus 408 ~l-~~il~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 408 YV-HQALPSILNLMNDQ-----SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLV 481 (861)
T ss_dssp HH-HHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 32 23444321 12121 2235666677777777766532112445555555444 6788888888888
Q ss_pred hhcC--------CCcchhHHHHHHHhhcCCc--hhHHHHHHHHHHHHhhchh
Q psy17474 275 KENN--------EYTPKVTDILGQLLQTNDT--TELSVVQSSIMTLCKNDIK 316 (343)
Q Consensus 275 ~~~~--------~~~~~v~diL~Qll~~d~~--~e~~~v~~sl~~l~~~d~~ 316 (343)
+.-+ .|++.|...|.+++...|. .=...+-.++..+.+..+.
T Consensus 482 ~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 8643 3677778888888886553 2233455677777666554
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.66 E-value=0.0059 Score=57.09 Aligned_cols=263 Identities=10% Similarity=0.121 Sum_probs=136.1
Q ss_pred HHHHHHHhhcccc--chhHHHHHhhhhhhhhhcc-C----CcchhhHhHHHHhhccCC-hhHH-HHHHHHHHHHHhh---
Q psy17474 3 QAIEALFDLCEDE--DVSVRKQAIKDLPSLCKEN-N----EYTPKVTDILGQLLQTND-TTEL-SVVQSSIMTLCKN--- 70 (343)
Q Consensus 3 ~Ai~a~lDLcEDe--D~~IR~qAIk~Lp~lck~~-~----e~v~kiaDVL~QLLqtdd-~~E~-~~V~~sL~~Llk~--- 70 (343)
+.+..++..+.++ |..+|..|+..|-.+|++. + .+.+.+...|.++|+.++ ..++ ...=+++..++..
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888 8999999999999999875 2 456677778888888774 2332 3344455543321
Q ss_pred --Chh---h-hHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhc
Q psy17474 71 --DIK---G-ALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWS 144 (343)
Q Consensus 71 --Dpk---~-tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l 144 (343)
++. . .+..++..+.++++.+|..+++.+..-.... ...+.+-+..-+...+.+.+++...+=....++++..+
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY-YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC-GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 111 1 1334444344457789988887776433322 22332222201222333444443322222233333322
Q ss_pred cc----------------------ccCh-HH-HHHHHHHHHHHhc-cCCCCCCCCchhhhhHHhhHHhhhhhhccCCCCh
Q psy17474 145 RL----------------------SQSL-AG-QKELMEIIKHHAE-LSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPST 199 (343)
Q Consensus 145 ~~----------------------~~t~-~g-~qeLv~li~eqa~-Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St 199 (343)
.- .... .+ -.+++..+.+... .+.+.+ |.+. ..-.+...++..++...+ .
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~--~~~~--~~r~~a~~~L~~l~~~~~-~ 361 (462)
T 1ibr_B 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD--DDDW--NPCKAAGVCLMLLATCCE-D 361 (462)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCC--TTCC--SHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccc--cccc--hHHHHHHHHHHHHHHhcc-H
Confidence 11 0011 11 1456665554432 111110 1111 122344444544444433 3
Q ss_pred hHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCC---CCchhhHHHHHHHHH-----HHHhhhhccc
Q psy17474 200 PFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVH---EDTPQHITSIVDCLF-----VRKQAIKDLP 271 (343)
Q Consensus 200 ~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~---e~~pqllesi~d~LL-----~r~qAik~lp 271 (343)
..+..+...+...++. .....|-..+..+..++..|+.. +..++.++.++..+- +|..|...|-
T Consensus 362 ~~~~~~~~~l~~~l~~--------~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 433 (462)
T 1ibr_B 362 DIVPHVLPFIKEHIKN--------PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (462)
T ss_dssp THHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4555555444444442 12246778888888888766421 123444444444432 8999999998
Q ss_pred hhhhhcCC
Q psy17474 272 SLCKENNE 279 (343)
Q Consensus 272 ~~c~~~~~ 279 (343)
.+|...++
T Consensus 434 ~~~~~~~~ 441 (462)
T 1ibr_B 434 RICELLPE 441 (462)
T ss_dssp HHHHHGGG
T ss_pred HHHHhccc
Confidence 88886544
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.62 E-value=0.0012 Score=64.84 Aligned_cols=293 Identities=11% Similarity=0.080 Sum_probs=168.0
Q ss_pred HHHHHHhhcccc-chhHHHHHhhhhhhhhhccCCcch-----hhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh-----
Q psy17474 4 AIEALFDLCEDE-DVSVRKQAIKDLPSLCKENNEYTP-----KVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI----- 72 (343)
Q Consensus 4 Ai~a~lDLcEDe-D~~IR~qAIk~Lp~lck~~~e~v~-----kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp----- 72 (343)
++..++.+..++ ++.||..|...|..+|.+++++.. .....|.++|++.++.=+...-++|..+...+|
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 577888888887 899999999999999998777654 446789999998887767777788887776544
Q ss_pred ---hhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccC
Q psy17474 73 ---KGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQS 149 (343)
Q Consensus 73 ---k~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t 149 (343)
.|.+..+...+..++..+|..++..|..=...-.+ ........-++..+.+.|.+-...-.......|..+-.. .
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~ 288 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP-QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG-P 288 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS-CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS-C
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC-CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-C
Confidence 36677777777777778888887776642211101 111122223344445556543322122233334333221 1
Q ss_pred hHHHHHH-----HHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHH-HHHhhcCCCCCCCCccccc
Q psy17474 150 LAGQKEL-----MEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSY-LCEQVLPKLDQIPETKDEA 223 (343)
Q Consensus 150 ~~g~qeL-----v~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y-~~~~vlP~l~~L~~~~~e~ 223 (343)
....+.+ ++.+.+-. . ..+++ .....-.++..++.+.+ ..... +...++|.+-.+-..
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL--~----~~~~~----v~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~---- 352 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELL--S----HESTL----VQTPALRAVGNIVTGND--LQTQVVINAGVLPALRLLLSS---- 352 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGG--G----CSCHH----HHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTC----
T ss_pred HHHHHHHHhcCcHHHHHHHH--C----CCChh----hHHHHHHHHHHHHcCCH--HHHHHHHHcchHHHHHHHHcC----
Confidence 2222222 22222211 1 11222 22233334444444322 22222 222455543222221
Q ss_pred CCchhhHHHHHHHHhhcCCCCCCCCc-----hhhHHHHHHHHH-----HHHhhhhccchhhhhcC---CCcch-----hH
Q psy17474 224 GGLDNQLEALKLLAELSPFYVVHEDT-----PQHITSIVDCLF-----VRKQAIKDLPSLCKENN---EYTPK-----VT 285 (343)
Q Consensus 224 ~~~~~kl~lLK~lAEls~~~~~~e~~-----pqllesi~d~LL-----~r~qAik~lp~~c~~~~---~~~~~-----v~ 285 (343)
.....|...+..++-++.++. +.. ...++.+.+.+- +|+.|+..|-.+|.+.+ +++.. +.
T Consensus 353 ~~~~vr~~A~~aL~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l 430 (530)
T 1wa5_B 353 PKENIKKEACWTISNITAGNT--EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI 430 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCH
Confidence 122467788888888876542 111 123333433332 88999999999998643 33332 56
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhchh
Q psy17474 286 DILGQLLQTNDTTELSVVQSSIMTLCKNDIK 316 (343)
Q Consensus 286 diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~ 316 (343)
..|.++|..+++.=...+-++|..|+...++
T Consensus 431 ~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 431 KPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 7788899888877777778888888876655
No 14
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.61 E-value=0.0046 Score=64.88 Aligned_cols=288 Identities=15% Similarity=0.123 Sum_probs=154.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCc-----chhhHhHHHHhhccC-ChhHHHHHHHHHHHHHhhC-----
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEY-----TPKVTDILGQLLQTN-DTTELSVVQSSIMTLCKND----- 71 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~-----v~kiaDVL~QLLqtd-d~~E~~~V~~sL~~Llk~D----- 71 (343)
.++..++.+..++|+.||..|++.|-.+|++.+.. .+.+...|+++|.++ ++.-....-.+|..|-+.+
T Consensus 150 g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~ 229 (780)
T 2z6g_A 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229 (780)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 47888899999999999999999999999864321 235677788888865 5444444455555532211
Q ss_pred --hhhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccC
Q psy17474 72 --IKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQS 149 (343)
Q Consensus 72 --pk~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t 149 (343)
-.|.+..+...+.++++.+|..++..|..=... ..+.-..-.+.-++..+.+.|.+-+..-.....+.|..+-. ..
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~-~~ 307 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GN 307 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TC
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CC
Confidence 135667777777777888888887777642211 11110001122334455566665322222334444543332 12
Q ss_pred hHHH---------HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHH-HHhhcCCCCCCCCc
Q psy17474 150 LAGQ---------KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYL-CEQVLPKLDQIPET 219 (343)
Q Consensus 150 ~~g~---------qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~-~~~vlP~l~~L~~~ 219 (343)
..++ ..|+.++. . .+++.. ......++-..+.. ......+ ...++|.+-.+-..
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~-------~---~~~~~~---~~~a~~aL~~Ls~~---~~~~~~i~~~g~l~~Ll~lL~~ 371 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMR-------T---YTYEKL---LWTTSRVLKVLSVC---SSNKPAIVEAGGMQALGLHLTD 371 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHT-------T---CCCHHH---HHHHHHHHHHHHTS---TTHHHHHHHTTHHHHHGGGTTC
T ss_pred hHHHHHHHHcCCHHHHHHHHh-------c---CCHHHH---HHHHHHHHHHhhcC---hHHHHHHHHhchHHHHHHHHcC
Confidence 2222 33444332 1 122211 11222333333332 1222233 23455544333221
Q ss_pred ccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH-----HHHhhhhccchhhhhcCCCc-----chhHHHHH
Q psy17474 220 KDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF-----VRKQAIKDLPSLCKENNEYT-----PKVTDILG 289 (343)
Q Consensus 220 ~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL-----~r~qAik~lp~~c~~~~~~~-----~~v~diL~ 289 (343)
.....+-..+..++.++......+..+..+..+...+- +|..|..-|=.+|.+++++. ....+.|.
T Consensus 372 ----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv 447 (780)
T 2z6g_A 372 ----PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 447 (780)
T ss_dssp ----SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHH
T ss_pred ----CchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 12245667788888887766555444555555544333 78899999999988765433 23567788
Q ss_pred HHhhcCCchhHHHHHHHHHHHHhh
Q psy17474 290 QLLQTNDTTELSVVQSSIMTLCKN 313 (343)
Q Consensus 290 Qll~~d~~~e~~~v~~sl~~l~~~ 313 (343)
++|...+..| .+...++..|-++
T Consensus 448 ~lL~~~~~~~-~v~~~Al~aL~nL 470 (780)
T 2z6g_A 448 RTVLRAGDRE-DITEPAICALRHL 470 (780)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHT
T ss_pred HHHHccCCHH-HHHHHHHHHHHHH
Confidence 8887632211 3444555555443
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.61 E-value=0.0023 Score=59.94 Aligned_cols=291 Identities=11% Similarity=0.052 Sum_probs=155.4
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhh-c-cCCc---ch--hhHhHHHHhhccC-ChhHHHHHHHHHHHHHhhCh---
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCK-E-NNEY---TP--KVTDILGQLLQTN-DTTELSVVQSSIMTLCKNDI--- 72 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck-~-~~e~---v~--kiaDVL~QLLqtd-d~~E~~~V~~sL~~Llk~Dp--- 72 (343)
++..++....++|+.+|..|.+.|-.++. . ++.. +. .+...|.++|+++ ++.-....-++|..+...++
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 36778888889999999999999998753 2 3321 22 5778889999988 55555566677777776544
Q ss_pred -----hhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhccc-CChhHHHHHHHHHhhccc
Q psy17474 73 -----KGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRN-VTGDEFMQIMDLLAWSRL 146 (343)
Q Consensus 73 -----k~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~d-VT~~EF~l~m~lL~~l~~ 146 (343)
.|.+..++..+.++++.+|+.++..|..=...- .+.-..-.+.-++..+.+.+++ -+..-.......|..+-.
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS-TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 356777777777778899999988877422211 0000000111223344455553 222223334445554433
Q ss_pred ccChHH----HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHH-HhhcCCCCCCCCccc
Q psy17474 147 SQSLAG----QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLC-EQVLPKLDQIPETKD 221 (343)
Q Consensus 147 ~~t~~g----~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~-~~vlP~l~~L~~~~~ 221 (343)
...+.. ...+++.+..... ..|++. ....-.++-+++.+.+ .....+. ..++|.+-.+-..
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~------~~~~~v----~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~~-- 245 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLF------VSDTDV----LADACWALSYLSDGPN--DKIQAVIDAGVCRRLVELLMH-- 245 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTT------CCCHHH----HHHHHHHHHHHTSSSH--HHHHHHHHTTTHHHHHHHTTC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHc------cCCHHH----HHHHHHHHHHHHCCCc--HHHHHHHHcCcHHHHHHHHCC--
Confidence 221100 0222333332211 223332 2233334444544322 2222222 2344433222111
Q ss_pred ccCCchhhHHHHHHHHhhcCCCCCCCC---chhhHHHHHHHHH-----HHHhhhhccchhhhhcCCCcc-----hhHHHH
Q psy17474 222 EAGGLDNQLEALKLLAELSPFYVVHED---TPQHITSIVDCLF-----VRKQAIKDLPSLCKENNEYTP-----KVTDIL 288 (343)
Q Consensus 222 e~~~~~~kl~lLK~lAEls~~~~~~e~---~pqllesi~d~LL-----~r~qAik~lp~~c~~~~~~~~-----~v~diL 288 (343)
.+...+...+..++.++......-+ ....++.+...+- +|+.|+.-|-.+|.++++++. .+...|
T Consensus 246 --~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 323 (450)
T 2jdq_A 246 --NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323 (450)
T ss_dssp --SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred --CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 1235688888999988765421100 0122223332221 899999999999987665543 455678
Q ss_pred HHHhhcCCchhHHHHHHHHHHHH
Q psy17474 289 GQLLQTNDTTELSVVQSSIMTLC 311 (343)
Q Consensus 289 ~Qll~~d~~~e~~~v~~sl~~l~ 311 (343)
.++|..+++.=...+-++|..|.
T Consensus 324 ~~~l~~~~~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 324 ISILQTAEFRTRKEAAWAITNAT 346 (450)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Confidence 88888776543333334444444
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.57 E-value=0.019 Score=62.16 Aligned_cols=295 Identities=13% Similarity=0.122 Sum_probs=180.2
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhhhhccC-----------------------CcchhhHhHHHHhhccCChhHHHHHH
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKENN-----------------------EYTPKVTDILGQLLQTNDTTELSVVQ 61 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~-----------------------e~v~kiaDVL~QLLqtdd~~E~~~V~ 61 (343)
+..+++...|.+..||..|++.++.+++... .+++.+...+.+.|+++++..+..+-
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 4455566668888999999999999997432 46788888889999988887777777
Q ss_pred HHHHHHHhhChh---hhHHHHHHhhhc----CC--chHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCCh-
Q psy17474 62 SSIMTLCKNDIK---GALKGMFNLIEI----SN--GPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTG- 131 (343)
Q Consensus 62 ~sL~~Llk~Dpk---~tL~~lf~qI~~----~d--e~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~- 131 (343)
.+|..+.+..|. ..+..++..+.. .. ..+|..++.++..-+...+++.+.+-.+.+ ...+.+.++|-..
T Consensus 456 ~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~l-lp~L~~~l~d~~~~ 534 (1230)
T 1u6g_C 456 NMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL-VPPVVACVGDPFYK 534 (1230)
T ss_dssp HHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTT-HHHHHHHHTCSSHH
T ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHH-HHHHHHHHcccchH
Confidence 777777776542 234444444432 22 278899999888766666655544433222 2233344555322
Q ss_pred ---hHHHHHHHHHhhcccc-----cChHH-HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHH
Q psy17474 132 ---DEFMQIMDLLAWSRLS-----QSLAG-QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFV 202 (343)
Q Consensus 132 ---~EF~l~m~lL~~l~~~-----~t~~g-~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv 202 (343)
+-...+-++.+.+... ..... ...+++.+..... . ...|++.-...+.|+......+.... .+++
T Consensus 535 v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~--~--~d~~~~vr~~a~~~lg~L~~~~g~~~--~~~~ 608 (1230)
T 1u6g_C 535 ITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK--A--ADIDQEVKERAISCMGQIICNLGDNL--GSDL 608 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHS--C--SSSCHHHHHHHHHHHHHHHHHTGGGC--CTHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHh--c--cCCCHHHHHHHHHHHHHHHHHhCchh--hhhH
Confidence 1122334444433321 11122 3567777665432 1 12345544566777777666554333 2344
Q ss_pred HHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH---------HHHhhhhccchh
Q psy17474 203 SYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDLPSL 273 (343)
Q Consensus 203 ~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL---------~r~qAik~lp~~ 273 (343)
.-+...+.+.+.. + ..+...++.+.+++...+..+ ....++.++..+. +|..|++.|-.+
T Consensus 609 ~~~l~~L~~~l~~--e--------~~r~~~~~al~~i~~~~~~~~-~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l 677 (1230)
T 1u6g_C 609 PNTLQIFLERLKN--E--------ITRLTTVKALTLIAGSPLKID-LRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 677 (1230)
T ss_dssp HHHHHHHHHHTTS--S--------SHHHHHHHHHHHHTTCSSCCC-CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--c--------hhHHHHHHHHHHHHhCccccc-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3333333333321 1 356788999999887655433 4556666666555 788999999999
Q ss_pred hhhcCCCc--chhHHHHHHH---hhcCCchhHHHHHHHHHHHHhhchhh
Q psy17474 274 CKENNEYT--PKVTDILGQL---LQTNDTTELSVVQSSIMTLCKNDIKV 317 (343)
Q Consensus 274 c~~~~~~~--~~v~diL~Ql---l~~d~~~e~~~v~~sl~~l~~~d~~~ 317 (343)
|+..++.+ ..+-.+|.++ +..+|..|...+-.+|..|++..+..
T Consensus 678 ~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~ 726 (1230)
T 1u6g_C 678 IKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSS 726 (1230)
T ss_dssp HHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGG
T ss_pred HhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchh
Confidence 99887644 3344455443 34577888889999999999877654
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.56 E-value=0.0015 Score=63.98 Aligned_cols=292 Identities=10% Similarity=0.070 Sum_probs=160.9
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhh-ccCCcc-----hhhHhHHHHhhccC-ChhHHHHHHHHHHHHHhhCh----
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCK-ENNEYT-----PKVTDILGQLLQTN-DTTELSVVQSSIMTLCKNDI---- 72 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck-~~~e~v-----~kiaDVL~QLLqtd-d~~E~~~V~~sL~~Llk~Dp---- 72 (343)
.+..++....++|+.+|..|+..|-.++. +.+..+ ..+...|.++|+++ ++.-....-++|..+...++
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 46777888888999999999999998854 323322 35678899999986 55555566777777776554
Q ss_pred ----hhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhccccc
Q psy17474 73 ----KGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQ 148 (343)
Q Consensus 73 ----k~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~ 148 (343)
.|.+..+...+.++++.+|+.++..|..=... ..+.-..-.+.-++..+.+.|.+-...-.......|..+-...
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-CccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 35667777777778889999998877742221 0000000111123444556666622222233444555444332
Q ss_pred Ch-HH---HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHH-hhcCCCCCCCCccccc
Q psy17474 149 SL-AG---QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCE-QVLPKLDQIPETKDEA 223 (343)
Q Consensus 149 t~-~g---~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~-~vlP~l~~L~~~~~e~ 223 (343)
.+ .. ...+++.+.... ...|++ ....+-.++-.++.+. ......+.+ .++|.+-.+-..
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL------~~~d~~----v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~Lv~lL~~---- 310 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLI------YSMDTE----TLVDACWAISYLSDGP--QEAIQAVIDVRIPKRLVELLSH---- 310 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHT------TCCCHH----HHHHHHHHHHHHHSSC--HHHHHHHHHTTCHHHHHHGGGC----
T ss_pred CCCCcHHHHHhHHHHHHHHH------cCCCHH----HHHHHHHHHHHHhCCC--HHHHHHHHhcCcHHHHHHHHCC----
Confidence 11 11 122333333321 122333 2333334455555432 222333333 555543333221
Q ss_pred CCchhhHHHHHHHHhhcCCCCCCCC---chhhHHHHHHHHH-----HHHhhhhccchhhhhcCCCcc-----hhHHHHHH
Q psy17474 224 GGLDNQLEALKLLAELSPFYVVHED---TPQHITSIVDCLF-----VRKQAIKDLPSLCKENNEYTP-----KVTDILGQ 290 (343)
Q Consensus 224 ~~~~~kl~lLK~lAEls~~~~~~e~---~pqllesi~d~LL-----~r~qAik~lp~~c~~~~~~~~-----~v~diL~Q 290 (343)
.....+...+..+..++......-. -...++.+...+- +|+.|+.-|-.+|..+++++. .+...|.+
T Consensus 311 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ 390 (530)
T 1wa5_B 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVK 390 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 1225688888899888764421100 0112222222221 899999999999987666543 45568888
Q ss_pred HhhcCCchhHHHHHHHHHHHHh
Q psy17474 291 LLQTNDTTELSVVQSSIMTLCK 312 (343)
Q Consensus 291 ll~~d~~~e~~~v~~sl~~l~~ 312 (343)
+|+..++.=...+-++|..|..
T Consensus 391 lL~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 391 LLEVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHh
Confidence 8987665444445555555544
No 18
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.55 E-value=0.034 Score=56.47 Aligned_cols=294 Identities=9% Similarity=0.078 Sum_probs=154.3
Q ss_pred HHHHHHHhhcccc-chhHHHHHhhhhhhhhhccC-------CcchhhHhHHHHhhccCC-hhH-HHHHHHHHHHHHh---
Q psy17474 3 QAIEALFDLCEDE-DVSVRKQAIKDLPSLCKENN-------EYTPKVTDILGQLLQTND-TTE-LSVVQSSIMTLCK--- 69 (343)
Q Consensus 3 ~Ai~a~lDLcEDe-D~~IR~qAIk~Lp~lck~~~-------e~v~kiaDVL~QLLqtdd-~~E-~~~V~~sL~~Llk--- 69 (343)
+.+..+++.+.++ |..+|..|++-+-.+|++.. .+...+...|.+.|+.++ ..+ +..+-++|..++.
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5678889999998 99999999999999998642 356667777788887663 223 3344455554421
Q ss_pred hCh------hhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhh
Q psy17474 70 NDI------KGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAW 143 (343)
Q Consensus 70 ~Dp------k~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~ 143 (343)
.+. ...+..++..+.++++.+|..+++-+..-+... ...+.+-+..-+...+.+.+.|....=...-++++..
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY-YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH-GGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 111 123455555454567789988888776543333 3344444442334455556666433222233444432
Q ss_pred ccccc-------------------ChHH-HHHHHHHHHHHhcc-CCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHH
Q psy17474 144 SRLSQ-------------------SLAG-QKELMEIIKHHAEL-SKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFV 202 (343)
Q Consensus 144 l~~~~-------------------t~~g-~qeLv~li~eqa~L-d~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv 202 (343)
+-... .... ...++..+.+...= +.+ ..|.+. ..-.+...++-.++...+ ...+
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d--~~d~~~--~~r~~a~~~L~~l~~~~~-~~~~ 367 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED--PEDDDW--NVSMSAGACLQLFAQNCG-NHIL 367 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC---CCCCC--HHHHHHHHHHHHHHHHHG-GGGH
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccc--cccccC--cHHHHHHHHHHHHHHHcc-HhHH
Confidence 21110 0111 14555555544321 110 101111 112233333333332221 2233
Q ss_pred HHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH---------HHHhhhhccchh
Q psy17474 203 SYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDLPSL 273 (343)
Q Consensus 203 ~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL---------~r~qAik~lp~~ 273 (343)
..+...+...++. .....|--.+..++.++..|++ +....+++.++..++ +|..|+.-+-.+
T Consensus 368 ~~l~~~l~~~l~~--------~~~~~r~~a~~~l~~i~~~~~~-~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l 438 (861)
T 2bpt_A 368 EPVLEFVEQNITA--------DNWRNREAAVMAFGSIMDGPDK-VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI 438 (861)
T ss_dssp HHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCH-HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--------CChhHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3333333333332 1124566778888888876651 223444555555554 788888877777
Q ss_pred hhh------cCCCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q psy17474 274 CKE------NNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCK 312 (343)
Q Consensus 274 c~~------~~~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~ 312 (343)
|.. +.+|++.+...|.+.|..+ +.-...+-++|..+.+
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 439 ADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 765 2467888888888888543 3222233344444443
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.54 E-value=0.0023 Score=64.65 Aligned_cols=269 Identities=14% Similarity=0.137 Sum_probs=145.4
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHH-HHHHh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALK-GMFNL 82 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~-~lf~q 82 (343)
++|++..-+.|+++.||..|++.|..++ +++..+-+...+.++|.+.++.=+...=.++..+++.+|...-. +++..
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~ 164 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS 164 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHH
Confidence 5677777778889999999999998886 57888888888889998777766666667777788877753221 33333
Q ss_pred hh----cCCchHHHHHHHHhhHhhhhhhhhh--chHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHH
Q psy17474 83 IE----ISNGPVREKCLRFLVPKIKMLGRDI--MTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKEL 156 (343)
Q Consensus 83 I~----~~de~vRe~~lkFl~~kl~~l~~~l--l~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeL 156 (343)
+. .++..+|..++.-|.+ +..-.++. +.- ....+ ..+.+.+.+.++---..++.+|..+.. ........+
T Consensus 165 l~~lL~d~d~~V~~~A~~aL~~-i~~~~~~~~~~~l-~~~~~-~~Ll~~l~~~~~~~q~~il~~l~~l~~-~~~~~~~~~ 240 (591)
T 2vgl_B 165 LRDLIADSNPMVVANAVAALSE-ISESHPNSNLLDL-NPQNI-NKLLTALNECTEWGQIFILDCLSNYNP-KDDREAQSI 240 (591)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHH-HTTSCCSCCSCCC-HHHHH-HHHHHHHHHCCHHHHHHHHHHHHTSCC-CSHHHHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHH-HHhhCCCccchhc-cHHHH-HHHHHcCCCCCchHHHHHHHHHHHhCC-CChHHHHHH
Confidence 32 3455888888887775 32222111 110 01111 122233334332222234444443331 122233555
Q ss_pred HHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCC-CChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHH
Q psy17474 157 MEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAI-PSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKL 235 (343)
Q Consensus 157 v~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v-~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~ 235 (343)
++.+... +..+|+.-+ ..|++... .+.+.. ++...++-+..++.|.+-.+... ++..|.-.|+.
T Consensus 241 l~~l~~~------l~~~~~~V~---~ea~~~i~-~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~-----d~~vr~~aL~~ 305 (591)
T 2vgl_B 241 CERVTPR------LSHANSAVV---LSAVKVLM-KFLELLPKDSDYYNMLLKKLAPPLVTLLSG-----EPEVQYVALRN 305 (591)
T ss_dssp HHHHTTC------SCSSTTHHH---HHHHHHHH-HSCCSCCBTTBSHHHHHHHTHHHHHHHTTS-----CHHHHHHHHHH
T ss_pred HHHHHHH------HcCCChHHH---HHHHHHHH-HHhhccCCCHHHHHHHHHHHHHHHHHHhcC-----CccHHHHHHHH
Confidence 5555432 233343322 33332222 222222 23334444455555532222221 23578888999
Q ss_pred HHhhcCCCCCCCCchhhHHHHHH----HHHHHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCc
Q psy17474 236 LAELSPFYVVHEDTPQHITSIVD----CLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDT 297 (343)
Q Consensus 236 lAEls~~~~~~e~~pqllesi~d----~LL~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~ 297 (343)
+..++...... ...++..++. ..-||+.|+.-|-.+|.+ +++..|..-|...+...|.
T Consensus 306 l~~i~~~~p~~--~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~--~nv~~iv~~L~~~l~~~d~ 367 (591)
T 2vgl_B 306 INLIVQKRPEI--LKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQ--ANIAQVLAELKEYATEVDV 367 (591)
T ss_dssp HHHHHHHCCST--TTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCS--STHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHhChHH--HHHHHHhheeccCChHHHHHHHHHHHHHHCCh--hhHHHHHHHHHHHHhcCCH
Confidence 88887643211 2223222110 123889999888888854 4577666666666655544
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.52 E-value=0.0013 Score=64.29 Aligned_cols=292 Identities=13% Similarity=0.103 Sum_probs=163.8
Q ss_pred HHHHHHhhccccc-hhHHHHHhhhhhhhhhccCCcchh-----hHhHHHHhhccCChhHHHHHHHHHHHHHhhChh----
Q psy17474 4 AIEALFDLCEDED-VSVRKQAIKDLPSLCKENNEYTPK-----VTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK---- 73 (343)
Q Consensus 4 Ai~a~lDLcEDeD-~~IR~qAIk~Lp~lck~~~e~v~k-----iaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk---- 73 (343)
++..++.+..+++ +.+|..|...|-.+|.+++++... ....|.++|.++++.=....-++|..+..-+|.
T Consensus 118 ~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 118 VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 5778888888887 899999999999999998887654 567899999998776666777777777655453
Q ss_pred ----hhHHHHHHhh-hcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhccccc
Q psy17474 74 ----GALKGMFNLI-EISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQ 148 (343)
Q Consensus 74 ----~tL~~lf~qI-~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~ 148 (343)
|.+..+...+ .+++..+|..+...|..=...-+ . -......-++..+.+.|.+-..+-.......|..+...
T Consensus 198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~-~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~- 274 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP-Q-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG- 274 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS-C-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-
T ss_pred HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC-C-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-
Confidence 5677777777 34566788877776663222111 0 01122233334444555543332222233444433322
Q ss_pred ChHHH-HHH-----HHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHH-HhhcCCCCCCCCccc
Q psy17474 149 SLAGQ-KEL-----MEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLC-EQVLPKLDQIPETKD 221 (343)
Q Consensus 149 t~~g~-qeL-----v~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~-~~vlP~l~~L~~~~~ 221 (343)
..++ +.+ ++.+..- |. ..+++. ...+-.++--++.+. ......+. ..++|.+-.+-...
T Consensus 275 -~~~~~~~~~~~g~v~~Lv~l--L~----~~~~~v----~~~a~~~L~nl~~~~--~~~~~~~~~~~~l~~L~~lL~~~- 340 (528)
T 4b8j_A 275 -TNDKIQAVIEAGVCPRLVEL--LL----HPSPSV----LIPALRTVGNIVTGD--DAQTQCIIDHQALPCLLSLLTQN- 340 (528)
T ss_dssp -CHHHHHHHHHTTCHHHHHHH--TT----CSCHHH----HHHHHHHHHHHTTSC--HHHHHHHHTTTHHHHHHHHHHSC-
T ss_pred -CHHHHHHHHHcCHHHHHHHH--Hc----CCChhH----HHHHHHHHHHHHcCC--HHHHHHHHHhhhHHHHHHHHcCC-
Confidence 1221 221 2222221 11 222222 222223333333322 22222222 23444333221110
Q ss_pred ccCCchhhHHHHHHHHhhcCCCCCCCCch-----hhHHHHHHHHH-----HHHhhhhccchhhhh-cCCCcc-----hhH
Q psy17474 222 EAGGLDNQLEALKLLAELSPFYVVHEDTP-----QHITSIVDCLF-----VRKQAIKDLPSLCKE-NNEYTP-----KVT 285 (343)
Q Consensus 222 e~~~~~~kl~lLK~lAEls~~~~~~e~~p-----qllesi~d~LL-----~r~qAik~lp~~c~~-~~~~~~-----~v~ 285 (343)
.....|-.....++-++... .+... ..++.+++.+- +|+.|...|-.+|.. ++++.. .+.
T Consensus 341 --~~~~v~~~A~~~L~nl~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i 416 (528)
T 4b8j_A 341 --LKKSIKKEACWTISNITAGN--KDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCI 416 (528)
T ss_dssp --CCHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred --CcHHHHHHHHHHHHHHHCCC--HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 02246777777777776532 11111 22333333332 888999999999987 444443 456
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhchh
Q psy17474 286 DILGQLLQTNDTTELSVVQSSIMTLCKNDIK 316 (343)
Q Consensus 286 diL~Qll~~d~~~e~~~v~~sl~~l~~~d~~ 316 (343)
..|.++|...|+.-...+-.+|..|++..++
T Consensus 417 ~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 417 KPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7889999998887677777788888876655
No 21
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.52 E-value=0.0054 Score=62.54 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=55.2
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK 73 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk 73 (343)
.+..+..+..|.++.||+.|+..+..+++.+|+.+..+.+.|.++|...|+.=+...=++|..+...+|.
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 3667778888999999999999999999999999999999999999877765444444556666665654
No 22
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.45 E-value=0.034 Score=56.64 Aligned_cols=297 Identities=10% Similarity=0.085 Sum_probs=152.2
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccC-----CcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChh-----
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENN-----EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK----- 73 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~-----e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk----- 73 (343)
.+..+.....|.+..+|..|+..|..++.+.+ .|++.+...|.++|+..++.=+...-++|..+...-+.
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 34455566778999999999999999998654 35677778888888766654455666777777765432
Q ss_pred hhH----HHHHHhhhcCCchHHHHHHHHhhHhhhhhh-------------hhhchHHHHHHHHHHHHHhcccCChh----
Q psy17474 74 GAL----KGMFNLIEISNGPVREKCLRFLVPKIKMLG-------------RDIMTKEIEEYTIDQCKKILRNVTGD---- 132 (343)
Q Consensus 74 ~tL----~~lf~qI~~~de~vRe~~lkFl~~kl~~l~-------------~~ll~~E~E~~i~~~ikKvL~dVT~~---- 132 (343)
..+ .+++..+.. +..+|+.+...+..=+...+ .+.+.+-.+. +...+.+.+.+...+
T Consensus 447 ~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL-IVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp TTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH-HHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHH-HHHHHHHHHhCcCcchhhH
Confidence 233 444444433 35788887766664333332 1234444433 444455556544211
Q ss_pred ---HHHHHHHHHhhcccccChHHHHHHHHHHHHHhc----cCCCC-CCCCchhhhhHHhhHHhhhhhhccCCCC---hhH
Q psy17474 133 ---EFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAE----LSKSF-DPSNPEDVDRSIYCSLHCVPYLCSAIPS---TPF 201 (343)
Q Consensus 133 ---EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~----Ld~~f-~~sD~e~vdRli~C~~~Alp~fS~~v~S---t~f 201 (343)
-++.+-.+....+. ...+--+.++..+.+... +.... ...|++.+..+..++-.++-.+.+.... .++
T Consensus 525 r~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 603 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSAK-DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI 603 (876)
T ss_dssp HHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTT
T ss_pred HHHHHHHHHHHHHHCch-hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHH
Confidence 12223333333322 111212456655555433 12111 2233333333333333333334333331 234
Q ss_pred HHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH----------HHHhhhhccc
Q psy17474 202 VSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF----------VRKQAIKDLP 271 (343)
Q Consensus 202 v~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL----------~r~qAik~lp 271 (343)
+..+...++..++.-. +....+...++.+..++..+|.. ....++.++..++ +|..|+.-+.
T Consensus 604 ~~~l~~~l~~~l~~~~------~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~ 675 (876)
T 1qgr_A 604 SDVVMASLLRMFQSTA------GSGGVQEDALMAVSTLVEVLGGE--FLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVG 675 (876)
T ss_dssp HHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHGGG--GGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc------CCCCccHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 4444444444443211 00124556666666665544421 2233333333322 7888998888
Q ss_pred hhhhhcCC----CcchhHHHHHHHhhcC--CchhHHHHHHHHHHHH
Q psy17474 272 SLCKENNE----YTPKVTDILGQLLQTN--DTTELSVVQSSIMTLC 311 (343)
Q Consensus 272 ~~c~~~~~----~~~~v~diL~Qll~~d--~~~e~~~v~~sl~~l~ 311 (343)
.+++..++ |++.+...|.+.|... +..-...+-+++-.+.
T Consensus 676 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~ 721 (876)
T 1qgr_A 676 DLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIA 721 (876)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHH
Confidence 88876554 3556666677777762 2233334444444443
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.44 E-value=0.0052 Score=59.90 Aligned_cols=289 Identities=13% Similarity=0.102 Sum_probs=162.9
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccC-Ccch-----hhHhHHHHhhccCC-hhHHHHHHHHHHHHHhhChh--
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENN-EYTP-----KVTDILGQLLQTND-TTELSVVQSSIMTLCKNDIK-- 73 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~-e~v~-----kiaDVL~QLLqtdd-~~E~~~V~~sL~~Llk~Dpk-- 73 (343)
+.+..++.+..++|+.+|..|...|-.+....+ +.+. .+...|.++|++++ +.-....-++|..+..-++.
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 347788888889999999999999988855443 4433 46788999999877 55555667777777765553
Q ss_pred ------hhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHH-----HHHHHHHhcc-cCChhHHHHHHHHH
Q psy17474 74 ------GALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEY-----TIDQCKKILR-NVTGDEFMQIMDLL 141 (343)
Q Consensus 74 ------~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~-----i~~~ikKvL~-dVT~~EF~l~m~lL 141 (343)
|.+..+...+.++++.+|+.++..|..=... .++.... ++..+.+.|. +-+..-.......|
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~------~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD------SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 227 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT------CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC------ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5677777777778889999988877642211 1121122 2233445553 32232233344555
Q ss_pred hhcccccChHH---HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHH-HHhhcCCCCCCC
Q psy17474 142 AWSRLSQSLAG---QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYL-CEQVLPKLDQIP 217 (343)
Q Consensus 142 ~~l~~~~t~~g---~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~-~~~vlP~l~~L~ 217 (343)
..+-....... ....++.+.... ...|++. ...+-.|+-+++.+. ......+ ...++|.+-.+-
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~v----~~~a~~aL~~l~~~~--~~~~~~~~~~g~v~~Lv~lL 295 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARLI------HSNDEEV----LTDACWALSYLSDGT--NDKIQAVIEAGVCPRLVELL 295 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHHT------TCCCHHH----HHHHHHHHHHHTSSC--HHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHH------CCCCHHH----HHHHHHHHHHHHcCC--HHHHHHHHHcCHHHHHHHHH
Confidence 54443321111 122333333321 1334333 333444555555442 2223333 224555433332
Q ss_pred CcccccCCchhhHHHHHHHHhhcCCCCCCCC---chhhHHHHHHHHH------HHHhhhhccchhhhhcCCCcc-----h
Q psy17474 218 ETKDEAGGLDNQLEALKLLAELSPFYVVHED---TPQHITSIVDCLF------VRKQAIKDLPSLCKENNEYTP-----K 283 (343)
Q Consensus 218 ~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~---~pqllesi~d~LL------~r~qAik~lp~~c~~~~~~~~-----~ 283 (343)
.. .....+...+..++-++......-. -...++.+...+- +|+.|..-|-.+|.++++++. .
T Consensus 296 ~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~ 371 (528)
T 4b8j_A 296 LH----PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG 371 (528)
T ss_dssp TC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred cC----CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence 21 1235788899999999864321100 0112233333222 788999999999987665543 3
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q psy17474 284 VTDILGQLLQTNDTTELSVVQSSIMTLCKN 313 (343)
Q Consensus 284 v~diL~Qll~~d~~~e~~~v~~sl~~l~~~ 313 (343)
+...|.++|++.+..=...+-++|..|...
T Consensus 372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 372 IIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 446788899887654444444555555443
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.34 E-value=0.019 Score=55.00 Aligned_cols=286 Identities=15% Similarity=0.117 Sum_probs=149.4
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCc-----chhhHhHHHHhhccC-ChhHHHHHHHHHHHHHhhC-----
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEY-----TPKVTDILGQLLQTN-DTTELSVVQSSIMTLCKND----- 71 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~-----v~kiaDVL~QLLqtd-d~~E~~~V~~sL~~Llk~D----- 71 (343)
.++..+..+..++|+.+|..|.+.|-.+|++.+.. .+.....|.++|.+. ++.-....-.+|..+-+-+
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 36788899999999999999999999999875421 124677888888765 5444444444555433211
Q ss_pred --hhhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHH-HHHHHHHHHHHhcccCChhHHHHHHHHHhhccccc
Q psy17474 72 --IKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKE-IEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQ 148 (343)
Q Consensus 72 --pk~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E-~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~ 148 (343)
-.|.+..+...+.++++.+|..++..|..=...- .+. ... .+.-.+..+.+.|.+-+..-.......|..+-. .
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~-~ 173 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGA-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY-G 173 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTH-HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-T
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cch-HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh-C
Confidence 1356666777676778888888887776422211 110 111 122334445556665332222223334443322 1
Q ss_pred ChH---------HHHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHH-HhhcCCCCCCCC
Q psy17474 149 SLA---------GQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLC-EQVLPKLDQIPE 218 (343)
Q Consensus 149 t~~---------g~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~-~~vlP~l~~L~~ 218 (343)
... |-..|+.++... +++.. ....-.++-.++... ..-..+. ..++|.+-.+-.
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~----------~~~~~---~~~a~~~L~~l~~~~---~~~~~~~~~g~~~~L~~ll~ 237 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTY----------TYEKL---LWTTSRVLKVLSVCS---SNKPAIVEAGGMQALGLHLT 237 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHC----------CCHHH---HHHHHHHHHHHTTST---THHHHHHHTTHHHHHHTTTT
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhC----------ChHHH---HHHHHHHHHHHhcCc---ccHHHHHHCCCHHHHHHHHh
Confidence 222 223445544421 11211 111222333333322 1222332 234554333322
Q ss_pred cccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH-----HHHhhhhccchhhhhcCCCcc-----hhHHHH
Q psy17474 219 TKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF-----VRKQAIKDLPSLCKENNEYTP-----KVTDIL 288 (343)
Q Consensus 219 ~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL-----~r~qAik~lp~~c~~~~~~~~-----~v~diL 288 (343)
. +..+.+-..+..++-++......+.....++.+...+- +|..|..-|=.+|.+++++.. .+.+.|
T Consensus 238 ~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L 313 (529)
T 1jdh_A 238 D----PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313 (529)
T ss_dssp S----SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHH
T ss_pred C----CChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Confidence 1 12245666777777777765544434444444443332 788888888888887654433 245677
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHh
Q psy17474 289 GQLLQTNDTTELSVVQSSIMTLCK 312 (343)
Q Consensus 289 ~Qll~~d~~~e~~~v~~sl~~l~~ 312 (343)
.++|...+.. -.+..+++..|.+
T Consensus 314 ~~ll~~~~~~-~~v~~~a~~~L~n 336 (529)
T 1jdh_A 314 VRTVLRAGDR-EDITEPAICALRH 336 (529)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHccCCH-HHHHHHHHHHHHH
Confidence 8888763211 2344455554443
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.34 E-value=0.0052 Score=52.71 Aligned_cols=98 Identities=18% Similarity=0.311 Sum_probs=79.9
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchh-----hHhHHHHhhccCChhHHHHHHHHHHHHHhhChh----
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPK-----VTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK---- 73 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~k-----iaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk---- 73 (343)
.++..++.+..++|..+|..|...|-.+|.+++++... ..+.|.++|.++++.=....-++|..+...++.
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 123 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 36888999999999999999999999999987777553 578899999988876677777778887765553
Q ss_pred ----hhHHHHHHhhhcCCchHHHHHHHHhhH
Q psy17474 74 ----GALKGMFNLIEISNGPVREKCLRFLVP 100 (343)
Q Consensus 74 ----~tL~~lf~qI~~~de~vRe~~lkFl~~ 100 (343)
|.+..+...+.++++.+|..++..|..
T Consensus 124 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 567777777777788899888887774
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.33 E-value=0.025 Score=57.23 Aligned_cols=286 Identities=15% Similarity=0.124 Sum_probs=151.8
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCc-----chhhHhHHHHhhccC-ChhHHHHHHHHHHHHHhhC------
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEY-----TPKVTDILGQLLQTN-DTTELSVVQSSIMTLCKND------ 71 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~-----v~kiaDVL~QLLqtd-d~~E~~~V~~sL~~Llk~D------ 71 (343)
+|..+..+..++|+.||..|.+.|-.+|++.+.. ...+...|+++|.+. ++.-....-.+|..+-+.+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 5788889999999999999999999999986421 125667788888865 4443444444454433211
Q ss_pred -hhhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHH-HHHHHHHHHHhcccCChhHHHHHHHHHhhcccccC
Q psy17474 72 -IKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEI-EEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQS 149 (343)
Q Consensus 72 -pk~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~-E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t 149 (343)
-.|.+..+...+.++++.+|..++.-|..=...- .. ....+ +.-++..+.+.|.+-+...-......|..+-.. .
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~-~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~ 171 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-N 171 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-C
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-ch-hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc-C
Confidence 1356667777777778888888877766422211 00 00111 222344555666654433223334455544331 2
Q ss_pred hHHH---------HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHH-hhcCCCCCCCCc
Q psy17474 150 LAGQ---------KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCE-QVLPKLDQIPET 219 (343)
Q Consensus 150 ~~g~---------qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~-~vlP~l~~L~~~ 219 (343)
...+ ..|+.++. . + +.+.+ ...+-.++-..+. +...-.++.+ .++|.+-.+-..
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~-------~--~-~~~~~---~~~a~~~L~nLs~---~~~~~~~l~~~g~l~~L~~ll~~ 235 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMR-------T--Y-TYEKL---LWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTD 235 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHT-------T--C-CCHHH---HHHHHHHHHHHTT---CTTHHHHHHHTTHHHHHHTTTTC
T ss_pred cHHHHHHHHcCChHHHHHHHH-------c--C-ChHHH---HHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhc
Confidence 2222 33333332 1 1 11211 1112222222332 2222334433 345543333221
Q ss_pred ccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH-----HHHhhhhccchhhhhcCCCcc-----hhHHHHH
Q psy17474 220 KDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF-----VRKQAIKDLPSLCKENNEYTP-----KVTDILG 289 (343)
Q Consensus 220 ~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL-----~r~qAik~lp~~c~~~~~~~~-----~v~diL~ 289 (343)
+....+-..+..|+.++......+.....+..+...+- +|..|...|-.+|..++++.. .+.+.|.
T Consensus 236 ----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv 311 (644)
T 2z6h_A 236 ----PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311 (644)
T ss_dssp ----SCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 12246777788888887765544433444444433332 788899999999887654332 3567788
Q ss_pred HHhhcCCchhHHHHHHHHHHHHhh
Q psy17474 290 QLLQTNDTTELSVVQSSIMTLCKN 313 (343)
Q Consensus 290 Qll~~d~~~e~~~v~~sl~~l~~~ 313 (343)
++|...+.. -.+...++..|-++
T Consensus 312 ~lL~~~~~~-~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 312 RTVLRAGDR-EDITEPAICALRHL 334 (644)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHccCCc-HHHHHHHHHHHHHH
Confidence 888763321 13444555554444
No 27
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.24 E-value=0.03 Score=57.48 Aligned_cols=282 Identities=16% Similarity=0.120 Sum_probs=143.7
Q ss_pred HHHHHHhhc--cccchhHHHHHhhhhhhhhhccCCcch--hhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhh---hH
Q psy17474 4 AIEALFDLC--EDEDVSVRKQAIKDLPSLCKENNEYTP--KVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKG---AL 76 (343)
Q Consensus 4 Ai~a~lDLc--EDeD~~IR~qAIk~Lp~lck~~~e~v~--kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~---tL 76 (343)
-+..+..++ .|.++-||+.|+=.+..+++-+|+.++ ...+.|.++|...|+.=+..+-.+|..+...+|+. ..
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~ 226 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV 226 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHH
Confidence 345566777 999999999999999999999999999 99999999998777754444444555666667652 12
Q ss_pred HHH---HHhhhc-C-------------CchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc---cCC------
Q psy17474 77 KGM---FNLIEI-S-------------NGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR---NVT------ 130 (343)
Q Consensus 77 ~~l---f~qI~~-~-------------de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~---dVT------ 130 (343)
..+ +.++.. + +|-.+-++++++.. +.+.. .++..+.+.+.+..++. +.+
T Consensus 227 ~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~-~~~~~----d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 227 SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC-YPPPE----DPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG-SSSCS----SHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH-hCCCC----CHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 222 223321 1 46688888888873 22211 12333333333333332 111
Q ss_pred --hhHHHHHHHHHhhcccccChHH-HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHH
Q psy17474 131 --GDEFMQIMDLLAWSRLSQSLAG-QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCE 207 (343)
Q Consensus 131 --~~EF~l~m~lL~~l~~~~t~~g-~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~ 207 (343)
...--.+++..+-.-...+.++ ++..+..+... | ..+|++. |.+ .-.++-.+....++..++.-+..
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~--L----~~~~~ni--ry~--aL~~l~~l~~~~~~~~~~~~~~~ 371 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQF--L----QHRETNL--RYL--ALESMCTLASSEFSHEAVKTHIE 371 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--S----SCSCHHH--HHH--HHHHHHHHTTCTTTHHHHHTTHH
T ss_pred ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--h----cCCCcch--HHH--HHHHHHHHHhccCcHHHHHHHHH
Confidence 0011112222221111112222 23333333321 1 1223221 111 11122222222222344444444
Q ss_pred hhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH---------HHHhhhhccchhhhhcC
Q psy17474 208 QVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDLPSLCKENN 278 (343)
Q Consensus 208 ~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL---------~r~qAik~lp~~c~~~~ 278 (343)
.+++.+.. + .+...|..-|..+..++. +..++.+...++ .|..+++.+-.+|..-+
T Consensus 372 ~i~~~L~~--d-----~d~~Ir~~aL~lL~~l~~--------~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 372 TVINALKT--E-----RDVSVRQRAVDLLYAMCD--------RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp HHHHHHTT--C-----CCHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcc--C-----CCHhHHHHHHHHHHHHcC--------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 45544331 1 112456666666666642 123444444444 56677777777776555
Q ss_pred CCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhhch
Q psy17474 279 EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI 315 (343)
Q Consensus 279 ~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~d~ 315 (343)
.......|+|.+++......=..-+-..+..+...+|
T Consensus 437 ~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~ 473 (621)
T 2vgl_A 437 VDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD 473 (621)
T ss_dssp SSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC
T ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh
Confidence 5567778888888876543322223345555555554
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.17 E-value=0.081 Score=57.18 Aligned_cols=264 Identities=13% Similarity=0.113 Sum_probs=141.4
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhcc-----CCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKEN-----NEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGAL 76 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~-----~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL 76 (343)
..++..+++=..+.|..+|.+|..+|-+..+.+ ++..+++...|.+.|++.++.-+...-.+|..+.+.-+...+
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 367888999999999999999999998877653 234568888888999877766666766777777765555455
Q ss_pred HHHHHhhh----cCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHH
Q psy17474 77 KGMFNLIE----ISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAG 152 (343)
Q Consensus 77 ~~lf~qI~----~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g 152 (343)
..++..+. .+++.+|..+..-+..-+..++.....+ .... ..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~---------------~~~~-------------------~~ 130 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS---------------ALAA-------------------NV 130 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C---------------CTHH-------------------HH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccccc---------------chHH-------------------HH
Confidence 55555443 3344667665554432211111110000 0000 00
Q ss_pred HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHH
Q psy17474 153 QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEA 232 (343)
Q Consensus 153 ~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~l 232 (343)
..+++..+.+..+ . ..++....--+.++...+..+.... .+++.=+...+++.+.+ + +...|-..
T Consensus 131 ~~~llp~L~~~l~--~---~~~~~~~~~al~~l~~~~~~~~~~l--~~~~~~ll~~l~~~L~~-~-------~~~vR~~a 195 (1230)
T 1u6g_C 131 CKKITGRLTSAIA--K---QEDVSVQLEALDIMADMLSRQGGLL--VNFHPSILTCLLPQLTS-P-------RLAVRKRT 195 (1230)
T ss_dssp HHHHHHHHHHHHS--C---CSCHHHHHHHHHHHHHHHHHTCSSC--TTTHHHHHHHHGGGGGC-S-------SHHHHHHH
T ss_pred HHHHHHHHHHHHc--C---CCchHHHHHHHHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHcC-C-------cHHHHHHH
Confidence 1222222222110 0 1111222222222222221111111 12333344445554442 1 12456677
Q ss_pred HHHHHhhcCCCCCCCCchhhHHHHHHHHH------HHHhhhhccchhhhhcC----CCcchhHHHHHHHhhcCCchhHHH
Q psy17474 233 LKLLAELSPFYVVHEDTPQHITSIVDCLF------VRKQAIKDLPSLCKENN----EYTPKVTDILGQLLQTNDTTELSV 302 (343)
Q Consensus 233 LK~lAEls~~~~~~e~~pqllesi~d~LL------~r~qAik~lp~~c~~~~----~~~~~v~diL~Qll~~d~~~e~~~ 302 (343)
++.++.++.+++.. ..+..++.+++.+. .|+.|+..+-.++...+ .|++.+...+.+.++.+++.=...
T Consensus 196 ~~al~~l~~~~~~~-~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~ 274 (1230)
T 1u6g_C 196 IIALGHLVMSCGNI-VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274 (1230)
T ss_dssp HHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHH
T ss_pred HHHHHHHHHhcCHH-HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 78888888777632 24455555555554 45667777766666443 578899999999998666554455
Q ss_pred HHHHHHHHHhhch
Q psy17474 303 VQSSIMTLCKNDI 315 (343)
Q Consensus 303 v~~sl~~l~~~d~ 315 (343)
+-.++..+.+.-+
T Consensus 275 a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 275 CIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCh
Confidence 5666666665433
No 29
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.16 E-value=0.0066 Score=51.40 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=77.7
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhh-----HhHHHHhhccCChhHHHHHHHHHHHHHhhCh-----
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKV-----TDILGQLLQTNDTTELSVVQSSIMTLCKNDI----- 72 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~ki-----aDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp----- 72 (343)
.++..++.+..+++..+|.+|+..|-.+|.++++....+ ...|.++|++.++.-...+-++|..+...++
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (210)
T 4db6_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 468889999999999999999999999999887775554 4789999999987666677777777765544
Q ss_pred ---hhhHHHHHHhhhcCCchHHHHHHHHhhH
Q psy17474 73 ---KGALKGMFNLIEISNGPVREKCLRFLVP 100 (343)
Q Consensus 73 ---k~tL~~lf~qI~~~de~vRe~~lkFl~~ 100 (343)
.|.+..+...+.++++.+|+.++..|..
T Consensus 134 ~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3456666666667778899888887774
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.02 E-value=0.018 Score=50.02 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=75.9
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchh-----hHhHHHHhhccCChhHHHHHHHHHHHHHhhChh----
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPK-----VTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK---- 73 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~k-----iaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk---- 73 (343)
.++..++.+..+++..+|..|...|-.+|.+++++... ....|.++|+++++.=....-++|..+..-++.
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence 36788999999999999999999999999988777554 567889999998765566666666666554442
Q ss_pred ----hhHHHHHHhhhcCCchHHHHHHHHhhH
Q psy17474 74 ----GALKGMFNLIEISNGPVREKCLRFLVP 100 (343)
Q Consensus 74 ----~tL~~lf~qI~~~de~vRe~~lkFl~~ 100 (343)
|.+..+...+.++++.+|+.++..|..
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456677777767777888888877764
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.99 E-value=0.016 Score=49.00 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=76.6
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhh-----HhHHHHhhccCChhHHHHHHHHHHHHHhhChh-----
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKV-----TDILGQLLQTNDTTELSVVQSSIMTLCKNDIK----- 73 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~ki-----aDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk----- 73 (343)
....+..|..++|..+|..|.+.|-.+|+++++....+ ...|.++|.++++.-....-++|..+...++.
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 34567788899999999999999999999888776554 56899999998877677777777777655553
Q ss_pred ---hhHHHHHHhhhcCCchHHHHHHHHhhH
Q psy17474 74 ---GALKGMFNLIEISNGPVREKCLRFLVP 100 (343)
Q Consensus 74 ---~tL~~lf~qI~~~de~vRe~~lkFl~~ 100 (343)
|.+..+...+.++++.+|+.+..-|..
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 122 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSN 122 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 467777887777888899888776664
No 32
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.96 E-value=0.02 Score=50.54 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=92.1
Q ss_pred HHHHHHHhhcc-ccchhHHHHHhhhhhhhhhccC----CcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh-hhhH
Q psy17474 3 QAIEALFDLCE-DEDVSVRKQAIKDLPSLCKENN----EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI-KGAL 76 (343)
Q Consensus 3 ~Ai~a~lDLcE-DeD~~IR~qAIk~Lp~lck~~~----e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp-k~tL 76 (343)
+.++++..+.. |.+..||..|.+.+..+|+.-. .|+..+...|...|....+.-+.....+|.+++..-+ ..-+
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll 135 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQ 135 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55677888885 9999999999999999998644 3567777777777777666777888999998887543 3344
Q ss_pred HHHHHhhhcCCchHHHHHHHHhhHhhhhhhhh-hchHHHHHHHHHHHHHhcccCCh
Q psy17474 77 KGMFNLIEISNGPVREKCLRFLVPKIKMLGRD-IMTKEIEEYTIDQCKKILRNVTG 131 (343)
Q Consensus 77 ~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~-ll~~E~E~~i~~~ikKvL~dVT~ 131 (343)
..++..+...+..+|+.++.||..-+....++ ...+... -+...+.+.|.|-..
T Consensus 136 ~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~-~l~p~l~~~l~D~~~ 190 (242)
T 2qk2_A 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK-LLTTSLVKTLNEPDP 190 (242)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH-HHHHHHHHHHTSSCH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH-HHHHHHHHHhcCCCh
Confidence 55555555567789999999999767666444 3344444 455566677766443
No 33
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.95 E-value=0.19 Score=46.82 Aligned_cols=297 Identities=9% Similarity=0.040 Sum_probs=146.2
Q ss_pred HHHHhhccccchhHHHHHhhhhhhhhhcc-CC-cchhhHhHHHHhhccC--ChhHHHHHHHHHHHHHhhC-hh---hh--
Q psy17474 6 EALFDLCEDEDVSVRKQAIKDLPSLCKEN-NE-YTPKVTDILGQLLQTN--DTTELSVVQSSIMTLCKND-IK---GA-- 75 (343)
Q Consensus 6 ~a~lDLcEDeD~~IR~qAIk~Lp~lck~~-~e-~v~kiaDVL~QLLqtd--d~~E~~~V~~sL~~Llk~D-pk---~t-- 75 (343)
+.++.+..+++..| .++...|..+++.. |+ ..+.+...|.+.++++ ++.-+...=.+|..+.+-- |+ ..
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 171 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN 171 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH
Confidence 44667777777778 78888888888763 42 4478888889999987 6655555555666665522 21 11
Q ss_pred -HHHHHHhhhc-C--CchHHHHHHHHhhHhhhhhhhhhchH-HHHHHHHHHHHHhcccCChhHHHHHHHHHhhcc----c
Q psy17474 76 -LKGMFNLIEI-S--NGPVREKCLRFLVPKIKMLGRDIMTK-EIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSR----L 146 (343)
Q Consensus 76 -L~~lf~qI~~-~--de~vRe~~lkFl~~kl~~l~~~ll~~-E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~----~ 146 (343)
+-..|.+..+ . +..+|..+++-+..-+.-+ .+.+.. ....++...+.+.+.+...+-....+..|..+- .
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT-HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333 3 4579988887666422111 111111 123455555555565544333333333333221 1
Q ss_pred -ccChHHHH-HHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhh------hhccC---------CCChhHHHHHHHhh
Q psy17474 147 -SQSLAGQK-ELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVP------YLCSA---------IPSTPFVSYLCEQV 209 (343)
Q Consensus 147 -~~t~~g~q-eLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp------~fS~~---------v~St~fv~y~~~~v 209 (343)
+... -. .+++++..... ..+++.....+.++..... .|... .....+++.+...+
T Consensus 251 ~~~~~--~~~~l~~~~~~~~~------~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (462)
T 1ibr_B 251 YMETY--MGPALFAITIEAMK------SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL 322 (462)
T ss_dssp GCTTT--TTTTHHHHHHHHHH------CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHc------CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhc
Confidence 1111 12 44554443221 1222221111221111111 11110 12234554444566
Q ss_pred cCCC-CCCCCcccc--cCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH-----HHHhhhhccchhhhhcC---
Q psy17474 210 LPKL-DQIPETKDE--AGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF-----VRKQAIKDLPSLCKENN--- 278 (343)
Q Consensus 210 lP~l-~~L~~~~~e--~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL-----~r~qAik~lp~~c~~~~--- 278 (343)
+|.+ ..+.+.++| .++...+-.....+..++..+|. .-.+..++.+...+- +|..|+..|-.++.+..
T Consensus 323 ~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~ 401 (462)
T 1ibr_B 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (462)
T ss_dssp HHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred cHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH
Confidence 6643 122221100 01223455555666666666662 212333332222221 88999999999887654
Q ss_pred --CCcchhHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q psy17474 279 --EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKN 313 (343)
Q Consensus 279 --~~~~~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~ 313 (343)
.+++.+...|.++|+..++.=...+-++|-.+...
T Consensus 402 ~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 46788999999999765544334445555555543
No 34
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.93 E-value=0.21 Score=49.25 Aligned_cols=287 Identities=12% Similarity=0.104 Sum_probs=154.0
Q ss_pred HHHHHHhhcc-ccchhHHHHHhhhhhhhhhccCCcchhhHh-----HHHHhhccCChhHHHHHHHHHHHHHhhChh----
Q psy17474 4 AIEALFDLCE-DEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTELSVVQSSIMTLCKNDIK---- 73 (343)
Q Consensus 4 Ai~a~lDLcE-DeD~~IR~qAIk~Lp~lck~~~e~v~kiaD-----VL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk---- 73 (343)
++..++.+.. ++++.++..|...|-.+|.+++++...|++ .|+++|++.++.-....-++|..+-.-+|.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556777665 455789999999999999999999877754 799999998877677777777777654442
Q ss_pred ----hhHHHHHHhhhcCCch-----HHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhc
Q psy17474 74 ----GALKGMFNLIEISNGP-----VREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWS 144 (343)
Q Consensus 74 ----~tL~~lf~qI~~~de~-----vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l 144 (343)
|.+..+...+...+.. +...+...++. +..-......-....-++..+.+.|.+-..+-.......|..+
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n-l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L 259 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN-LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH-HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH-HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4555566555544321 12222222221 1110001111122233444445556543332222222333333
Q ss_pred ccccChHH----------HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHH-HhhcCCC
Q psy17474 145 RLSQSLAG----------QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLC-EQVLPKL 213 (343)
Q Consensus 145 ~~~~t~~g----------~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~-~~vlP~l 213 (343)
... ... ...|++++. ..++... ...-.|+-..+.+ +...-..+. ..++|.+
T Consensus 260 ~~~--~~~~~~~i~~~g~i~~Lv~lL~----------~~~~~v~----~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L 321 (510)
T 3ul1_B 260 TDG--PNERIEMVVKKGVVPQLVKLLG----------ATELPIV----TPALRAIGNIVTG--TDEQTQKVIDAGALAVF 321 (510)
T ss_dssp TSS--CHHHHHHHHTTTCHHHHHHHHT----------CSCHHHH----HHHHHHHHHHTTS--CHHHHHHHHHTTGGGGC
T ss_pred hhc--hhhhHHHHHhcccchhhhhhhc----------CCChhhh----hHHHHHHHHhhcC--CHHHHHHHhhccchHHH
Confidence 221 111 123333332 2232222 2222333333322 223333333 4678877
Q ss_pred CCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchh-----hHHHHHHHHH-----HHHhhhhccchhhhhc-CCCcc
Q psy17474 214 DQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQ-----HITSIVDCLF-----VRKQAIKDLPSLCKEN-NEYTP 282 (343)
Q Consensus 214 ~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pq-----llesi~d~LL-----~r~qAik~lp~~c~~~-~~~~~ 282 (343)
-.+-.. ...+.|-.....++-++.... +.... .++.+++.+- +|+.|...|=.+|.+. ++++.
T Consensus 322 ~~LL~~----~~~~v~~~A~~aL~nl~a~~~--~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~ 395 (510)
T 3ul1_B 322 PSLLTN----PKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395 (510)
T ss_dssp C-CTTC----SSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHhcC----CCHHHHHHHHHHHHHHHcCcH--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 766543 233567788888888865432 11111 2222333222 8888988888888753 33333
Q ss_pred -----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhch
Q psy17474 283 -----KVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI 315 (343)
Q Consensus 283 -----~v~diL~Qll~~d~~~e~~~v~~sl~~l~~~d~ 315 (343)
.+...|.+||.+.|+.=...+=.+|..|++...
T Consensus 396 ~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 396 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 345788999999888766666677777776543
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.85 E-value=0.013 Score=55.13 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=93.9
Q ss_pred HHHHHHHhhccc-cchhHHHHHhhhhhhhhhccCCcchhhHh-----HHHHhhccCChhHHHHHHHHHHHHHhhCh----
Q psy17474 3 QAIEALFDLCED-EDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTELSVVQSSIMTLCKNDI---- 72 (343)
Q Consensus 3 ~Ai~a~lDLcED-eD~~IR~qAIk~Lp~lck~~~e~v~kiaD-----VL~QLLqtdd~~E~~~V~~sL~~Llk~Dp---- 72 (343)
.|+..++.|... .+..||+.|+..|..+|++++.....+.+ +|.++|++.++.=...+=++|..+..-++
T Consensus 124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~ 203 (296)
T 1xqr_A 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 203 (296)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHH
Confidence 367788888874 47899999999999999998876554544 89999998876555556677777776665
Q ss_pred ----hhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhch-----HHHHHHHHHHHHHhcc-cC-ChhHHHHHHHHH
Q psy17474 73 ----KGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMT-----KEIEEYTIDQCKKILR-NV-TGDEFMQIMDLL 141 (343)
Q Consensus 73 ----k~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~-----~E~E~~i~~~ikKvL~-dV-T~~EF~l~m~lL 141 (343)
.|.+..++..+.+++..+|+.++..|..=+..-+...-. +....++.+. ++.++ .- ..++.+..+.++
T Consensus 204 ~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~-~~~lq~~e~~~e~~~~~~~il 282 (296)
T 1xqr_A 204 TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR-CQLLQQHEEYQEELEFCEKLL 282 (296)
T ss_dssp HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH-HHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH-HHHccchHHHHHHHHHHHHHH
Confidence 467778888888888899999999887544331211110 1233344443 44455 22 245555555555
Q ss_pred h
Q psy17474 142 A 142 (343)
Q Consensus 142 ~ 142 (343)
.
T Consensus 283 ~ 283 (296)
T 1xqr_A 283 Q 283 (296)
T ss_dssp H
T ss_pred H
Confidence 5
No 36
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.63 E-value=0.079 Score=44.68 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
.....++.+.+|+|..+|..|+..|..+.. +...+.|.++|..+++.- -..++..|-++.....+..+...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~v---r~~a~~~L~~~~~~~~~~~L~~~ 84 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWV---RRAAADALGQIGDERAVEPLIKA 84 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHH---HHHHHHHHHHHCCGGGHHHHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHcCCCHHH---HHHHHHHHHhhCCHHHHHHHHHH
Confidence 345667778888888888888888887764 245677778887665443 33444444555555667777776
Q ss_pred hhcCCchHHHHHHHHhhH
Q psy17474 83 IEISNGPVREKCLRFLVP 100 (343)
Q Consensus 83 I~~~de~vRe~~lkFl~~ 100 (343)
+..+++.+|..++.-|..
T Consensus 85 l~d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQ 102 (201)
T ss_dssp TTCSSHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHH
Confidence 666677788777776653
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.57 E-value=0.03 Score=57.05 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=71.2
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLI 83 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI 83 (343)
++|++..-+.|.++.||-.|++.|..++. ++.++-+...+.++|.+.++.=+...=.++..+++.+|. .+..++..+
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l 184 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPAT 184 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGT
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHH
Confidence 67787777788999999999999999984 588888888999999988876666666677777888885 334555555
Q ss_pred hc----CCchHHHHHHHHhhH
Q psy17474 84 EI----SNGPVREKCLRFLVP 100 (343)
Q Consensus 84 ~~----~de~vRe~~lkFl~~ 100 (343)
.. .+..++.-++..+..
T Consensus 185 ~~lL~D~d~~V~~~Al~~L~~ 205 (618)
T 1w63_A 185 KNLLNEKNHGVLHTSVVLLTE 205 (618)
T ss_dssp TTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHhHHHHHHHHHHH
Confidence 43 355788877777664
No 38
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.55 E-value=0.0091 Score=59.14 Aligned_cols=101 Identities=21% Similarity=0.298 Sum_probs=76.0
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHh-------hChh-
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCK-------NDIK- 73 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk-------~Dpk- 73 (343)
++-++-++.+.-|.+..||+..+..|-+.|+..+++++++.+.|.-||..+|+.=+..+=.+..++|+ .+|.
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~ 141 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVI 141 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45678899999999999999999999999999999999999999999997776433333333334442 2332
Q ss_pred ----hhHHHHHHhhh--------cCCchHHHHHHHHhhHhh
Q psy17474 74 ----GALKGMFNLIE--------ISNGPVREKCLRFLVPKI 102 (343)
Q Consensus 74 ----~tL~~lf~qI~--------~~de~vRe~~lkFl~~kl 102 (343)
...+..++.+. ++.+.+|..++||+..=+
T Consensus 142 ~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 142 SELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 24455555543 467899999999998644
No 39
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.54 E-value=0.014 Score=54.71 Aligned_cols=96 Identities=25% Similarity=0.478 Sum_probs=71.0
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHH---HHHh-------hC
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIM---TLCK-------ND 71 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~---~Llk-------~D 71 (343)
++-++.++.+.-|.+..||+..+..|.+.|+..+++++++.+.|.-||+.+|+. ++++++. ++|+ .+
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~---V~K~~I~~~~~iY~~~l~~i~~~ 128 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQ---VIKRVIQACGSIYKNGLQYLCSL 128 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHH---HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhcC
Confidence 355778889999999999999999999999999999999999999999976654 4555444 3332 23
Q ss_pred hh-----hhHHHHHHhhh--------cCCchHHHHHHHHhhH
Q psy17474 72 IK-----GALKGMFNLIE--------ISNGPVREKCLRFLVP 100 (343)
Q Consensus 72 pk-----~tL~~lf~qI~--------~~de~vRe~~lkFl~~ 100 (343)
|. ...+..++++. ++.+.+|..++||+..
T Consensus 129 ~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 129 MEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEG 170 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 32 23444444443 3566788888888774
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.49 E-value=0.23 Score=49.03 Aligned_cols=287 Identities=11% Similarity=0.093 Sum_probs=149.7
Q ss_pred HHHHHHhhcc-ccchhHHHHHhhhhhhhhhccCCcchhhH-----hHHHHhhccCChhHHHHHHHHHHHHHhhCh-----
Q psy17474 4 AIEALFDLCE-DEDVSVRKQAIKDLPSLCKENNEYTPKVT-----DILGQLLQTNDTTELSVVQSSIMTLCKNDI----- 72 (343)
Q Consensus 4 Ai~a~lDLcE-DeD~~IR~qAIk~Lp~lck~~~e~v~kia-----DVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp----- 72 (343)
+|..++.+.. ++++.++..|...|-.+|.+++++...|+ ..|++||++.++.=....-++|..+-.-+|
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~ 199 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDL 199 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4556777774 55578999999999999999988876664 579999999987766777777777766555
Q ss_pred ---hhhHHHHHHhhhcCCch-----HHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhc
Q psy17474 73 ---KGALKGMFNLIEISNGP-----VREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWS 144 (343)
Q Consensus 73 ---k~tL~~lf~qI~~~de~-----vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l 144 (343)
.|.+..+...+..++.. +...+...++. +..-......-....-++..+.+.|.+-..+-..-....|..+
T Consensus 200 i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n-l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 200 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN-LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH-HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH-HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 24555555555443321 22222222221 1100001111122222333344455432221111111122222
Q ss_pred ccccChHH----------HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHH-HhhcCCC
Q psy17474 145 RLSQSLAG----------QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLC-EQVLPKL 213 (343)
Q Consensus 145 ~~~~t~~g----------~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~-~~vlP~l 213 (343)
.. .... ...|++++. ..++..... .-.|+--.+.+ +...-..+. ..++|.+
T Consensus 279 ~~--~~~~~~~~v~~~g~i~~Lv~lL~----------~~~~~v~~~----a~~aL~nl~~~--~~~~~~~i~~~g~l~~L 340 (529)
T 3tpo_A 279 TD--GPNERIEMVVKKGVVPQLVKLLG----------ATELPIVTP----ALRAIGNIVTG--TDEQTQKVIDAGALAVF 340 (529)
T ss_dssp HS--SCHHHHHHHHTTTCHHHHHHHHT----------CSCHHHHHH----HHHHHHHHTTS--CHHHHHHHHHTTGGGGH
T ss_pred hh--hhhhhHHHHHhccchHHHHHHhc----------CCChhHHHH----HHHHHHHHHcc--chHHHHHHhhcccHHHH
Confidence 11 1111 123333332 223322221 22222222222 222222333 3566665
Q ss_pred CCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCch-----hhHHHHHHHHH-----HHHhhhhccchhhhh-cCCCcc
Q psy17474 214 DQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTP-----QHITSIVDCLF-----VRKQAIKDLPSLCKE-NNEYTP 282 (343)
Q Consensus 214 ~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~p-----qllesi~d~LL-----~r~qAik~lp~~c~~-~~~~~~ 282 (343)
-.+-.. ...+.|-+....++-++.... +... ..++.++..+- +|+.|...|-.+|.+ +++++.
T Consensus 341 ~~LL~~----~~~~i~~~a~~aL~nl~~~~~--~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~ 414 (529)
T 3tpo_A 341 PSLLTN----PKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIV 414 (529)
T ss_dssp HHHTTC----SSHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHcC----CCHHHHHHHHHHHHHHhcccH--HHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 544332 223467777777777765432 1111 12223333222 888999999988875 334444
Q ss_pred h-----hHHHHHHHhhcCCchhHHHHHHHHHHHHhhch
Q psy17474 283 K-----VTDILGQLLQTNDTTELSVVQSSIMTLCKNDI 315 (343)
Q Consensus 283 ~-----v~diL~Qll~~d~~~e~~~v~~sl~~l~~~d~ 315 (343)
. +...|.+||.+.|+.=..++=.+|..|++...
T Consensus 415 ~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 415 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 4 35679999999998777777778888876543
No 41
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.46 E-value=0.008 Score=52.22 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=73.3
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcch-----hhHhHHHHhhccCChhHHHHHHHHHHHHHhhChh----
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTP-----KVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK---- 73 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~-----kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk---- 73 (343)
.++..++++..++|..||..|...|-.+|.++++... .+...|.++|.+.++.-...+-++|..+...+|.
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 217 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 217 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3688999999999999999999999999998777653 4567899999988766666667777777765553
Q ss_pred ----hhHHHHHHhhhcCCchHHHHHHHHhh
Q psy17474 74 ----GALKGMFNLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 74 ----~tL~~lf~qI~~~de~vRe~~lkFl~ 99 (343)
|.+..+...+.++++.+|+.+...|.
T Consensus 218 ~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 218 VKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp HHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred HHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444555455567778877776665
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.45 E-value=0.02 Score=48.43 Aligned_cols=89 Identities=21% Similarity=0.186 Sum_probs=65.7
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
+++..+..+..|+|+.||..|++.|..+.. +...+.|.++|..+++.-+..+-+ .|-++.....+..+...
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~---aL~~~~~~~~~~~L~~~ 146 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAF---ALGEIGDERAVEPLIKA 146 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHH---HHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHcCCCHHHHHHHHH---HHHHhCCHHHHHHHHHH
Confidence 578888999999999999999999998865 346777888887776544444444 44444556677777777
Q ss_pred hhcCCchHHHHHHHHhhH
Q psy17474 83 IEISNGPVREKCLRFLVP 100 (343)
Q Consensus 83 I~~~de~vRe~~lkFl~~ 100 (343)
+..+++.+|..++.-|..
T Consensus 147 l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 147 LKDEDGWVRQSAADALGE 164 (201)
T ss_dssp TTCSSHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHH
Confidence 766777899888776653
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.41 E-value=0.019 Score=48.91 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=66.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
+++..++.+..|+|..||..|+..|..++. +...+.|.++|..+++.-+... +..|-++.....+..+...
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a---~~aL~~~~~~~~~~~L~~~ 151 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAA---AFALGEIGDERAVEPLIKA 151 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHH---HHHHHHHCCGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCCCHHHHHHH---HHHHHHcCCHHHHHHHHHH
Confidence 578889999999999999999999999865 3566788888877776444444 4444445566677777777
Q ss_pred hhcCCchHHHHHHHHhhH
Q psy17474 83 IEISNGPVREKCLRFLVP 100 (343)
Q Consensus 83 I~~~de~vRe~~lkFl~~ 100 (343)
+..+++.+|..++.-|..
T Consensus 152 l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 152 LKDEDGWVRQSAADALGE 169 (211)
T ss_dssp TTCSSHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHH
Confidence 766777899888777663
No 44
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.29 E-value=0.023 Score=45.79 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=9.6
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhh
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSL 30 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~l 30 (343)
+..++.+..|+|..+|..|+..|..+
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~ 39 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRM 39 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 33444444555555555555555444
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.17 E-value=0.054 Score=46.07 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=85.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
+++..++.+..|+|..||..|++.|..++. +...+.|.++|+++++.- -..++..|-++.....+..+...
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~v---r~~a~~aL~~~~~~~~~~~L~~~ 120 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIKALKDEDGWV---RQSAAVALGQIGDERAVEPLIKA 120 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHH---HHHHHHHHHHHCCGGGHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcCCCHHH---HHHHHHHHHHhCcHHHHHHHHHH
Confidence 688999999999999999999999999874 356788889998877643 34455555566666778888887
Q ss_pred hhcCCchHHHHHHHHhhHhhh----hhhhhhchHHHHHHHHHHHHHhcccCChhH-HHHHHHHHh
Q psy17474 83 IEISNGPVREKCLRFLVPKIK----MLGRDIMTKEIEEYTIDQCKKILRNVTGDE-FMQIMDLLA 142 (343)
Q Consensus 83 I~~~de~vRe~~lkFl~~kl~----~l~~~ll~~E~E~~i~~~ikKvL~dVT~~E-F~l~m~lL~ 142 (343)
+..+++.+|..++.-|..--. +.-...++ +-...++......|..+...+ ...+..+|.
T Consensus 121 l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~ 184 (211)
T 3ltm_A 121 LKDEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGGERVRAAMEKLAE 184 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCchhHHHHHHHHHh
Confidence 777788899888877753211 11112222 122344445555555444433 344555554
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.07 E-value=0.14 Score=45.41 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=69.1
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHH-hhccCChhHHHHHHHHHHHHHhhCh---hhhHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQ-LLQTNDTTELSVVQSSIMTLCKNDI---KGALK 77 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~Q-LLqtdd~~E~~~V~~sL~~Llk~Dp---k~tL~ 77 (343)
.+++..++.++.|+|..||..|+..|..++.. ++.++.+...|.+ +++.+++.-+..+-++|..+-..+| ...+.
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~ 131 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVE 131 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHH
Confidence 35888999999999999999999999998754 4556667777764 4555665555666677777665543 34455
Q ss_pred HHHHhhhcCCchHHHHHHHHhh
Q psy17474 78 GMFNLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 78 ~lf~qI~~~de~vRe~~lkFl~ 99 (343)
.+...+..+++.+|..++..+.
T Consensus 132 ~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 132 QSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHH
Confidence 5555555667789988877765
No 47
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.98 E-value=0.29 Score=42.97 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=33.0
Q ss_pred HHhhccccchhHHHHHhhhhhhhhhccCC----cchhhHhHHHHhhc
Q psy17474 8 LFDLCEDEDVSVRKQAIKDLPSLCKENNE----YTPKVTDILGQLLQ 50 (343)
Q Consensus 8 ~lDLcEDeD~~IR~qAIk~Lp~lck~~~e----~v~kiaDVL~QLLq 50 (343)
+++..+|.|-..|+.|+.+|-.++++.++ ...++.+.|..+|.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~ 66 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVIT 66 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhc
Confidence 45566788999999999999999987543 34677777777775
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.56 E-value=0.067 Score=47.57 Aligned_cols=93 Identities=22% Similarity=0.276 Sum_probs=62.0
Q ss_pred HHHHHHh-hccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 4 AIEALFD-LCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 4 Ai~a~lD-LcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
.+..+.+ +..|+|..||..|+..|..++..++.+.+.+...|.++|+++++.=+. .+...|-++.....+..+...
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~---~a~~aL~~~~~~~~~~~L~~~ 167 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRR---ATAFAISVINDKATIPLLINL 167 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHH---HHHHHHHTC---CCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHH---HHHHHHHhcCCHHHHHHHHHH
Confidence 3444444 456788888888888888888877777788888888888876654333 333444445445566677766
Q ss_pred hhcCCchHHHHHHHHhh
Q psy17474 83 IEISNGPVREKCLRFLV 99 (343)
Q Consensus 83 I~~~de~vRe~~lkFl~ 99 (343)
+..++..+|..++.-|.
T Consensus 168 l~d~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 168 LKDPNGDVRNWAAFAIN 184 (280)
T ss_dssp HTCSSHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHH
Confidence 66667778877766664
No 49
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.30 E-value=1.1 Score=45.13 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=73.9
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCC--cchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChh--------
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNE--YTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK-------- 73 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e--~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk-------- 73 (343)
++..++.+..+.+..+|..|...|-.+|++.+. .+..+...|.++|.++++.-+...-++|..|-..++.
T Consensus 225 ~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~ 304 (644)
T 2z6h_A 225 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 304 (644)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 678899999999999999999999999997654 3667888999999998877777777888777665543
Q ss_pred hhHHHHHHhhhc-CC-chHHHHHHHHhhH
Q psy17474 74 GALKGMFNLIEI-SN-GPVREKCLRFLVP 100 (343)
Q Consensus 74 ~tL~~lf~qI~~-~d-e~vRe~~lkFl~~ 100 (343)
+.+..+..-+.. ++ +.+|+.++.-|..
T Consensus 305 g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 305 GGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 345555555544 33 5788777776653
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.20 E-value=3 Score=42.68 Aligned_cols=273 Identities=13% Similarity=0.146 Sum_probs=154.0
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhh--ccCChhHHHHHHHHHHHHHhhChhh-----hH
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLL--QTNDTTELSVVQSSIMTLCKNDIKG-----AL 76 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLL--qtdd~~E~~~V~~sL~~Llk~Dpk~-----tL 76 (343)
++|++.-=+.|.++.||-.|++.|..++- |++++-+..-+.++| ...+|-=+...=-++..+++.+|.. -+
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~ 189 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS--REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHH
Confidence 56776655568889999999999999964 789999999999999 5455444444555666788888743 23
Q ss_pred HHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc--cCC---------hhHHHH--HHHHHhh
Q psy17474 77 KGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR--NVT---------GDEFMQ--IMDLLAW 143 (343)
Q Consensus 77 ~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~--dVT---------~~EF~l--~m~lL~~ 143 (343)
..+..-+...+..++.-++..+.+-.. -.+..+.+ .-..+...+++++. +.+ .++|-. ++++|..
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~-~~~~~~~~-~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~ 267 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQ-KNPEEFKT-SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC 267 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH-HCHHHHTT-HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHH-hChHHHHH-HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence 334333333566788888877665222 11111111 11123344445543 232 145633 4454544
Q ss_pred cccccChHHHHHHHHHHHHHhcc--CCC----CCCCC-chhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCC
Q psy17474 144 SRLSQSLAGQKELMEIIKHHAEL--SKS----FDPSN-PEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQI 216 (343)
Q Consensus 144 l~~~~t~~g~qeLv~li~eqa~L--d~~----f~~sD-~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L 216 (343)
+.....+..+..+.+++..-... +.+ ++..+ .-.| +..|++..+-+- ++..++.-..+.+...+.
T Consensus 268 ~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aV--l~ea~~~i~~l~----~~~~~~~~~~~~L~~~L~-- 339 (621)
T 2vgl_A 268 YPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAV--LFEAISLIIHHD----SEPNLLVRACNQLGQFLQ-- 339 (621)
T ss_dssp SSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHH--HHHHHHHHHHHC----CCHHHHHHHHHHHHHHSS--
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHH--HHHHHHHHHhcC----CcHHHHHHHHHHHHHHhc--
Confidence 43322233345555544433211 110 00001 1122 445554443331 345555555544443332
Q ss_pred CCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH------HHHhhhhccchhhhhcCCCcchhHHHHHH
Q psy17474 217 PETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF------VRKQAIKDLPSLCKENNEYTPKVTDILGQ 290 (343)
Q Consensus 217 ~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL------~r~qAik~lp~~c~~~~~~~~~v~diL~Q 290 (343)
. .++..|.=.|..+..++...+..+-...+...++.++- ||+.|+.-|-.+|.+ +++..|..-|..
T Consensus 340 -~-----~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~eL~~ 411 (621)
T 2vgl_A 340 -H-----RETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQIVAEMLS 411 (621)
T ss_dssp -C-----SCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHH
T ss_pred -C-----CCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHHHHHHHH
Confidence 1 12357888999999998754322223455556666554 899999999999976 457787777777
Q ss_pred HhhcCC
Q psy17474 291 LLQTND 296 (343)
Q Consensus 291 ll~~d~ 296 (343)
.+..-|
T Consensus 412 yl~~~d 417 (621)
T 2vgl_A 412 YLETAD 417 (621)
T ss_dssp HHHHCC
T ss_pred HHHhcC
Confidence 776544
No 51
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.11 E-value=0.26 Score=46.25 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=73.0
Q ss_pred HHHHHHh-hccccchhHHHHHhhhhhhhhhccCCcchhhH-----hHHHHhhccC-ChhHHHHHHHHHHHHHhhChh---
Q psy17474 4 AIEALFD-LCEDEDVSVRKQAIKDLPSLCKENNEYTPKVT-----DILGQLLQTN-DTTELSVVQSSIMTLCKNDIK--- 73 (343)
Q Consensus 4 Ai~a~lD-LcEDeD~~IR~qAIk~Lp~lck~~~e~v~kia-----DVL~QLLqtd-d~~E~~~V~~sL~~Llk~Dpk--- 73 (343)
++..++. |-...++.||.+|...|..++.++|+....+. ..|.+||.++ ++.-....-++|..+.+-+|.
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 4566778 88889999999999999999999988765544 5789999976 444456677888888876552
Q ss_pred -----hhHHHHHHhhhcCCchHHHHHHHHhhH
Q psy17474 74 -----GALKGMFNLIEISNGPVREKCLRFLVP 100 (343)
Q Consensus 74 -----~tL~~lf~qI~~~de~vRe~~lkFl~~ 100 (343)
|.+..+...+.+++..+|.++...|+.
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~ 193 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN 193 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445556666666788888887766663
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.95 E-value=0.51 Score=46.55 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=71.6
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchh-----hHhHHHHhhccCChhHHHHHHHHHHHHHhhChh---
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPK-----VTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK--- 73 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~k-----iaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk--- 73 (343)
..++..+..|+.++|..||..|...|-.++.++++.... +...|+++|.+.++.-....-.+|..+...++.
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 329 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 329 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH
Confidence 467888999999999999999999999999987776543 456799999988766555555666666555543
Q ss_pred -----hhHHHHHHhhhcCCchHHHHHHHHhhH
Q psy17474 74 -----GALKGMFNLIEISNGPVREKCLRFLVP 100 (343)
Q Consensus 74 -----~tL~~lf~qI~~~de~vRe~~lkFl~~ 100 (343)
|.+..+..-+.++++.+|+.+.-.|+.
T Consensus 330 ~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 330 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 361 (529)
T ss_dssp HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHhhcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334444444555677788777666653
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.90 E-value=0.4 Score=51.52 Aligned_cols=265 Identities=14% Similarity=0.185 Sum_probs=135.9
Q ss_pred HHHHhhccc-cchhHHHHHhhhhhhhhhccCCcchhhHhH-----HHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHH
Q psy17474 6 EALFDLCED-EDVSVRKQAIKDLPSLCKENNEYTPKVTDI-----LGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGM 79 (343)
Q Consensus 6 ~a~lDLcED-eD~~IR~qAIk~Lp~lck~~~e~v~kiaDV-----L~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~l 79 (343)
..+.-|++. .+..|...|+|-|..+|++++++...+-.. +.+++.++++.=..+..+-|-.+| .+|+|+
T Consensus 52 ~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 126 (810)
T 3now_A 52 AKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTIL-----NALSGL 126 (810)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHH-----HHHHTC
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHhcc
Confidence 344445555 778899999999999999987776655444 377888876554444443333322 233333
Q ss_pred HHhhhcC-CchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc--cCChhHHHHHHHHHhhccccc--------
Q psy17474 80 FNLIEIS-NGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR--NVTGDEFMQIMDLLAWSRLSQ-------- 148 (343)
Q Consensus 80 f~qI~~~-de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~--dVT~~EF~l~m~lL~~l~~~~-------- 148 (343)
-++...+ |+.+=+ -.++|...++...+ ..+. .||+..-+..+++|..-=.++
T Consensus 127 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 189 (810)
T 3now_A 127 KNKPDSKPDKELCT----------------RNNREIDTLLTCLV-YSITDRTISGAARDGVIELITRNVHYTALEWAERL 189 (810)
T ss_dssp CSSTTCCCCHHHHH----------------HTHHHHHHHHHHHH-HHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHH
T ss_pred ccccccCCcHHHHh----------------hhhhHHHHHHHHHH-HHhhccccChhhHHHHHHHHHHhCCccccccccch
Confidence 3333322 222110 01123333333332 2332 455555555555554222111
Q ss_pred -ChHHHHHHHHHHHHHhcc--CCCCCCCCchhhhhHHhhHHhhhhhhccCC------CChhHHHHHHHhhcCCCCCCCCc
Q psy17474 149 -SLAGQKELMEIIKHHAEL--SKSFDPSNPEDVDRSIYCSLHCVPYLCSAI------PSTPFVSYLCEQVLPKLDQIPET 219 (343)
Q Consensus 149 -t~~g~qeLv~li~eqa~L--d~~f~~sD~e~vdRli~C~~~Alp~fS~~v------~St~fv~y~~~~vlP~l~~L~~~ 219 (343)
...|-+.|++...+-.+. +..++.++.- ..-.+ +-.+.-|-.-+. ....+-+|+..++.+
T Consensus 190 ~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~--r~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 258 (810)
T 3now_A 190 VEIRGLCRLLDVCSELEDYKYESAMDITGSS--STIAS-VCLARIYENMYYDEAKARFTDQIDEYIKDKLLA-------- 258 (810)
T ss_dssp HHTTHHHHHHHHHTCCSSSCCSSCCCCCTTH--HHHHH-HHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSS--------
T ss_pred hhHhhHHHHHHHHhcCccccccccCCCChhH--HHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHhcc--------
Confidence 123556666655544443 3444443322 11222 112222333332 123444555555544
Q ss_pred ccccCCchhhHHHHHHHHhhcCCCCCCCCchhhH------HHHHHHH-----HHHHhhhhccchhhhhcCC---Ccch-h
Q psy17474 220 KDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHI------TSIVDCL-----FVRKQAIKDLPSLCKENNE---YTPK-V 284 (343)
Q Consensus 220 ~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqll------esi~d~L-----L~r~qAik~lp~~c~~~~~---~~~~-v 284 (343)
++.+.++.....++-+ |.|+.+.....+ ++++..+ .++.+|...+=..|.+ ++ ++.+ =
T Consensus 259 ----~~~~~~~~a~~alt~i--~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~g 331 (810)
T 3now_A 259 ----PDMESKVRVTVAITAL--LNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQG 331 (810)
T ss_dssp ----CCHHHHHHHHHHHHHH--HSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHH
T ss_pred ----CChHhHHHHHHHHHHH--hcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcC
Confidence 1235678888888887 555554333222 3333222 1677888888777765 23 2222 1
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q psy17474 285 TDILGQLLQTNDTTELSVVQSSIMTLCKN 313 (343)
Q Consensus 285 ~diL~Qll~~d~~~e~~~v~~sl~~l~~~ 313 (343)
+..|.++|++++. .. =.+|+..|.|+
T Consensus 332 v~~L~~Ll~s~~~-~v--r~~Al~~L~kl 357 (810)
T 3now_A 332 VDILKRLYHSKND-GI--RVRALVGLCKL 357 (810)
T ss_dssp HHHHHHHTTCSCH-HH--HHHHHHHHHHH
T ss_pred cHHHHHHHcCCCH-HH--HHHHHHHHHHh
Confidence 3899999997763 22 33777788876
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.51 Score=42.72 Aligned_cols=127 Identities=12% Similarity=0.303 Sum_probs=83.2
Q ss_pred HHHHHHHhhc-cccchhHHHHHhhhhhhhhhccC--Ccc-hhhHhHHHHhhc--cCChhH-HHHHHHHHHHHHhhC-h--
Q psy17474 3 QAIEALFDLC-EDEDVSVRKQAIKDLPSLCKENN--EYT-PKVTDILGQLLQ--TNDTTE-LSVVQSSIMTLCKND-I-- 72 (343)
Q Consensus 3 ~Ai~a~lDLc-EDeD~~IR~qAIk~Lp~lck~~~--e~v-~kiaDVL~QLLq--tdd~~E-~~~V~~sL~~Llk~D-p-- 72 (343)
+.++++.... .|.++.||..|++.|-++|++-. ++- +-...+|.-+|. .|-..+ .++...+|..++..- |
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~ 139 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA 139 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc
Confidence 4455666666 68888999999999999998764 444 455556666665 233233 467888898888733 2
Q ss_pred -----hhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhh--hhchHHHHHHHHHHHHHhcccC
Q psy17474 73 -----KGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGR--DIMTKEIEEYTIDQCKKILRNV 129 (343)
Q Consensus 73 -----k~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~--~ll~~E~E~~i~~~ikKvL~dV 129 (343)
...+..++..+.+....+|+.+++||..-+...+. ..+.+.+-.-+...+.+.|.|-
T Consensus 140 ~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~ 203 (249)
T 2qk1_A 140 SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT 203 (249)
T ss_dssp TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS
T ss_pred cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 24455566656667789999999999987766553 3333333122334455666653
No 55
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.45 E-value=0.52 Score=46.42 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=68.5
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcch-----hhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhh-
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTP-----KVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGA- 75 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~-----kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~t- 75 (343)
..++..+..|..++|..||..|...|-.+|.++++... .+...|+++|.+.++.-....-.+|..+...++..+
T Consensus 231 ~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~ 310 (510)
T 3ul1_B 231 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310 (510)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHH
Confidence 45788899999999999999999999999998777644 355679999998876555555555556555555332
Q ss_pred -------HHHHHHhhhcCCchHHHHHHHHhhH
Q psy17474 76 -------LKGMFNLIEISNGPVREKCLRFLVP 100 (343)
Q Consensus 76 -------L~~lf~qI~~~de~vRe~~lkFl~~ 100 (343)
+..+..-+.++++.+|+.+...|..
T Consensus 311 ~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~n 342 (510)
T 3ul1_B 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 342 (510)
T ss_dssp HHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2222222334566778777666553
No 56
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.43 E-value=5.7 Score=41.53 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=66.9
Q ss_pred HHHHHHHhhccc-cchhHHHHHhhhhhhhhhccCCcch-----hhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh----
Q psy17474 3 QAIEALFDLCED-EDVSVRKQAIKDLPSLCKENNEYTP-----KVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI---- 72 (343)
Q Consensus 3 ~Ai~a~lDLcED-eD~~IR~qAIk~Lp~lck~~~e~v~-----kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp---- 72 (343)
.++..++.+..+ +|+.+|..|.+.|-.++++ +++.. .....|+++|+++++.=....-++|..+..-++
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 467788877654 4889999999999999886 34433 345689999999886555566666666665542
Q ss_pred ----hhhHHHHHHhhhcCCchHHHHHHHHhh
Q psy17474 73 ----KGALKGMFNLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 73 ----k~tL~~lf~qI~~~de~vRe~~lkFl~ 99 (343)
.|.+..+...+.+++..+|+.+...+.
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 355666666666666677777655554
No 57
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.54 Score=50.40 Aligned_cols=137 Identities=14% Similarity=0.165 Sum_probs=91.2
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcc-hhh-----------HhHHHHhhccCChhHHHHHHHHHHHHHhh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYT-PKV-----------TDILGQLLQTNDTTELSVVQSSIMTLCKN 70 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v-~ki-----------aDVL~QLLqtdd~~E~~~V~~sL~~Llk~ 70 (343)
.|+.++.+|+.++...||+.|..-+-.++.+ |+-+ .++ ..+|++|++++|..-..+.-.+|..+-..
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 4889999999999999999999999999974 5432 233 45899999999998888899999988766
Q ss_pred Chh---------hhHHHHHHhhhc--CCchHHHHHHHHhhHhhh----hhhhhhchHHH-HHHHHHHHHHhcc-cCChhH
Q psy17474 71 DIK---------GALKGMFNLIEI--SNGPVREKCLRFLVPKIK----MLGRDIMTKEI-EEYTIDQCKKILR-NVTGDE 133 (343)
Q Consensus 71 Dpk---------~tL~~lf~qI~~--~de~vRe~~lkFl~~kl~----~l~~~ll~~E~-E~~i~~~ikKvL~-dVT~~E 133 (343)
+|. +.+..+..-+.. +++.+|.|.+.++..=+. ....+.+.+-+ -.-....+.++|+ .-.++|
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e 764 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPE 764 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSS
T ss_pred ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHH
Confidence 663 233334443334 688999999999986443 22223333322 1122334455665 334555
Q ss_pred HHHHHHH
Q psy17474 134 FMQIMDL 140 (343)
Q Consensus 134 F~l~m~l 140 (343)
|--.|..
T Consensus 765 ~~~~~~~ 771 (778)
T 3opb_A 765 FSAAIPV 771 (778)
T ss_dssp TTSHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 58
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=93.54 E-value=0.4 Score=45.77 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=74.4
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCc--chhhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh--------
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEY--TPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI-------- 72 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~--v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp-------- 72 (343)
.++..++++..+.+..+|..|...|-.+|++.+.. ...+...|.++|.++++.-....-++|..+-..++
T Consensus 227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 306 (529)
T 1jdh_A 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306 (529)
T ss_dssp THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46888999999999999999999999999976544 56778889999999888777777778887766554
Q ss_pred hhhHHHHHHhhhc-CC-chHHHHHHHHhhH
Q psy17474 73 KGALKGMFNLIEI-SN-GPVREKCLRFLVP 100 (343)
Q Consensus 73 k~tL~~lf~qI~~-~d-e~vRe~~lkFl~~ 100 (343)
.+.+..+...+.. ++ +.+|+.++..|..
T Consensus 307 ~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 307 VGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 3445555555544 22 5778777777663
No 59
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=92.52 E-value=0.13 Score=41.25 Aligned_cols=88 Identities=20% Similarity=0.198 Sum_probs=66.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNL 82 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~q 82 (343)
.++..++.+..|+|..||..|++.|..++. +...+.|..+|..+++.=+...-++| -++.....+..+...
T Consensus 42 ~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL---~~~~~~~a~~~L~~~ 112 (131)
T 1te4_A 42 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSL---EQIGGERVRAAMEKL 112 (131)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHH---HHHCSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHH---HHhCcHHHHHHHHHH
Confidence 356888999999999999999999999974 35678888888876664444444444 455566677777777
Q ss_pred hhcCCchHHHHHHHHhh
Q psy17474 83 IEISNGPVREKCLRFLV 99 (343)
Q Consensus 83 I~~~de~vRe~~lkFl~ 99 (343)
+..+++.+|..+..-|.
T Consensus 113 l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 113 AETGTGFARKVAVNYLE 129 (131)
T ss_dssp TTSCCTHHHHHHHHHGG
T ss_pred HhCCCHHHHHHHHHHHH
Confidence 76677789998887664
No 60
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.24 E-value=9.8 Score=39.66 Aligned_cols=127 Identities=14% Similarity=0.239 Sum_probs=73.5
Q ss_pred CCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchh
Q psy17474 172 PSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQ 251 (343)
Q Consensus 172 ~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pq 251 (343)
+.+....+-.+.|+......+.... .+++.-+.. ++|. ++.. .+..+...+..+..++.+.+. -++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~--~~~l~~l~~-~l~~---l~~~-----~~~vr~~~~~~l~~~~~~l~~---~~~ 525 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNY--SDVVPGLIG-LIPR---ISIS-----NVQLADTVMFTIGALSEWLAD---HPV 525 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSC--CSHHHHHHH-HGGG---SCCC-----SHHHHHHHHHHHHHTHHHHHH---CHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchh--hHHHHHHHH-HHHh---CCCC-----cHHHHHHHHHHHHHHHHHHHh---CHH
Confidence 3455566666666666554444322 345544433 3443 3321 223577777777777766542 245
Q ss_pred hHHHHHHHHH-------HHHhhhhccchhhhhcCC----CcchhHHHHHHHhhcC--CchhHHHHHHHHHHHHh
Q psy17474 252 HITSIVDCLF-------VRKQAIKDLPSLCKENNE----YTPKVTDILGQLLQTN--DTTELSVVQSSIMTLCK 312 (343)
Q Consensus 252 llesi~d~LL-------~r~qAik~lp~~c~~~~~----~~~~v~diL~Qll~~d--~~~e~~~v~~sl~~l~~ 312 (343)
.+..+++.++ ++..|...|-.+|.+.++ |++.+.+.|.++++.. +..+...+=.|+..+..
T Consensus 526 ~l~~vl~~l~~~l~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 526 MINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHTTTHHHHHHHTTCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 6666666665 677788888888887655 3444555556667653 34566666667776664
No 61
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.53 E-value=13 Score=39.01 Aligned_cols=220 Identities=15% Similarity=0.187 Sum_probs=114.7
Q ss_pred HHHHHhhcc-ccchhHHHHHhhhhhhhhh---ccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHH
Q psy17474 5 IEALFDLCE-DEDVSVRKQAIKDLPSLCK---ENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMF 80 (343)
Q Consensus 5 i~a~lDLcE-DeD~~IR~qAIk~Lp~lck---~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf 80 (343)
++.+..++. |..+.||..|+..+..+|. .+++|.+.+-..|...|. +.=....-.|+..+.+. .+..+...+
T Consensus 507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~-~~~~l~p~~ 582 (971)
T 2x1g_F 507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRD-CQLQLKPYA 582 (971)
T ss_dssp HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHH-CHHHHHHHH
T ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHH-HHHhccccH
Confidence 444455663 5688999999999998886 457888888888888882 33344556677777643 333455555
Q ss_pred Hhhhc-------C---CchHHHHHHHHhhHhhhhhhhhhchHHHHHH---HHHHHHHhcccC--ChhHHHHHHHHHh---
Q psy17474 81 NLIEI-------S---NGPVREKCLRFLVPKIKMLGRDIMTKEIEEY---TIDQCKKILRNV--TGDEFMQIMDLLA--- 142 (343)
Q Consensus 81 ~qI~~-------~---de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~---i~~~ikKvL~dV--T~~EF~l~m~lL~--- 142 (343)
.+|.+ . +...|+.+++.+..-+..++.+...+-.+.+ +...+..+++.- +.+.....++.+.
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 44432 1 3467777777777655544433333333332 333333443321 2222222333332
Q ss_pred ----hccccc-----------ChHH-HHHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHH
Q psy17474 143 ----WSRLSQ-----------SLAG-QKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLC 206 (343)
Q Consensus 143 ----~l~~~~-----------t~~g-~qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~ 206 (343)
.++... .... .+++++++..-.+. + +.|++-+++...++..++-.+... -.+|+.-+.
T Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~---~-~~~~~v~e~~~~~~~~~~~~~~~~--~~p~l~~~~ 736 (971)
T 2x1g_F 663 TLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM---W-VEEIDVLEAACSAMKHAITNLRSS--FQPMLQDLC 736 (971)
T ss_dssp HHHHHHTC-------------CCHHHHHTTHHHHHHHHHH---T-TTCHHHHHHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh---c-cccHHHHHHHHHHHHHHHHhhhhh--ccccHHHHH
Confidence 222110 0000 23455554443321 2 346677788888888776666443 355666666
Q ss_pred HhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCC
Q psy17474 207 EQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVV 245 (343)
Q Consensus 207 ~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~ 245 (343)
+.++..+..-+. -.+|..++.++.-.|.
T Consensus 737 ~~l~~~~~~~~~-----------~~~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 737 LFIVASFQTRCC-----------APTLEISKTAIVMFFK 764 (971)
T ss_dssp HHHHHHCC--CC-----------HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcCCc-----------hHHHHHHHHHHHHhCC
Confidence 666655543110 2466666666655564
No 62
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.69 E-value=3 Score=37.62 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=81.4
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccC-----CcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChh--hhH
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENN-----EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK--GAL 76 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~-----e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk--~tL 76 (343)
-+-++++..-|-...||..|...+-.+|...+ -|++.+.+.|...|++..+.....+=+.|.+++..-++ ..+
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence 46688999988888999999999999999763 23667888888899999998888888888888877664 344
Q ss_pred HHHH-Hhhhc--------CCchHHHHHHHHhhHhhhhhhhhhchH
Q psy17474 77 KGMF-NLIEI--------SNGPVREKCLRFLVPKIKMLGRDIMTK 112 (343)
Q Consensus 77 ~~lf-~qI~~--------~de~vRe~~lkFl~~kl~~l~~~ll~~ 112 (343)
...+ ..|.+ ++..+|+.+.+.+..=.+-.+...+.+
T Consensus 185 ~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p 229 (249)
T 2qk1_A 185 QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVK 229 (249)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4444 44332 455799999988886555555544444
No 63
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.24 E-value=0.38 Score=44.87 Aligned_cols=76 Identities=11% Similarity=0.070 Sum_probs=55.1
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhc--cCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKE--NNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALK 77 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~--~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~ 77 (343)
|+++..+...+.|++.-||+.|+.++...|+- -+....++.-+|..|....+.-=...|=|+|..+-|-||.-+..
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 34677888999999999999999999888875 12334455556666555444444668888999999999965443
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=90.09 E-value=0.96 Score=44.03 Aligned_cols=96 Identities=11% Similarity=0.180 Sum_probs=71.8
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhh-----HhHHHHhhccCChhHHHHHHHHHHHHHhhCh------
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKV-----TDILGQLLQTNDTTELSVVQSSIMTLCKNDI------ 72 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~ki-----aDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp------ 72 (343)
.|..++.+-..+|+.+|..|...|-.+|++++..-..| ...|+++|.++++.-....-++|..|..-++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46677888888899999999999999998876654333 4579999999887666677778877776433
Q ss_pred --hhhHHHHHHhhh-cCCchHHHHHHHHhh
Q psy17474 73 --KGALKGMFNLIE-ISNGPVREKCLRFLV 99 (343)
Q Consensus 73 --k~tL~~lf~qI~-~~de~vRe~~lkFl~ 99 (343)
.|.+..+...+. ++++.+|+.+..-|.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLW 112 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 455666777776 667788877765554
No 65
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=87.98 E-value=1.1 Score=48.00 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=58.0
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHh------HHHHhhccCChhHHHHHHHHHHHHHhhCh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD------ILGQLLQTNDTTELSVVQSSIMTLCKNDI 72 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaD------VL~QLLqtdd~~E~~~V~~sL~~Llk~Dp 72 (343)
.++..++.|++.+|..||++|...|..++.++++.+..+.+ .|++||.+++..-....-++|..+...++
T Consensus 665 g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp SHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 46788999999999999999999999999977777666665 99999999887767777777777776544
No 66
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=87.45 E-value=6.8 Score=37.95 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=72.2
Q ss_pred HhhccCChhHHHHHHHHHHHHHhhChhh--hHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHH
Q psy17474 47 QLLQTNDTTELSVVQSSIMTLCKNDIKG--ALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKK 124 (343)
Q Consensus 47 QLLqtdd~~E~~~V~~sL~~Llk~Dpk~--tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikK 124 (343)
.++||+|......|--.++.+.+..... +.+++-+.+.++++.+|-.+|.+++. +..+|+=+.+...+|+
T Consensus 75 kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~--------I~~~~m~~~l~~~lk~ 146 (355)
T 3tjz_B 75 KLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQ--------ITDSTMLQAIERYMKQ 146 (355)
T ss_dssp GGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHH--------HCCTTTHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhc--------CCCHHHHHHHHHHHHH
Confidence 3899999999999999999988873322 34555566667889999999999994 3455677777777889
Q ss_pred hcccCChhHHHHHHHHHhhcccccChHH
Q psy17474 125 ILRNVTGDEFMQIMDLLAWSRLSQSLAG 152 (343)
Q Consensus 125 vL~dVT~~EF~l~m~lL~~l~~~~t~~g 152 (343)
.|.|-. -.+-=..++..+++++..+.
T Consensus 147 ~L~d~~--pyVRk~A~l~~~kL~~~~pe 172 (355)
T 3tjz_B 147 AIVDKV--PSVSSSALVSSLHLLKCSFD 172 (355)
T ss_dssp HHTCSS--HHHHHHHHHHHHHHTTTCHH
T ss_pred HcCCCC--HHHHHHHHHHHHHHhccCHH
Confidence 998753 46666677777888876665
No 67
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=87.09 E-value=32 Score=36.03 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=75.4
Q ss_pred CCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhh
Q psy17474 173 SNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQH 252 (343)
Q Consensus 173 sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pql 252 (343)
.+-...+-.+.|+......+.... .+++..+.. ++|.+.. .+ ..+..|...+..+.-++.+.+. -++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~--~~~l~~l~~-~l~~l~~-~d-----~~~~vr~~a~~~l~~~~~~l~~---~~~~ 543 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE--KRQIPRLMR-VLAEIPY-EK-----LNVKLLGTALETMGSYCNWLME---NPAY 543 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC--------CHHHHHHH-HHHHSCT-TT-----SCHHHHHHHHHHHHHTHHHHC-------C
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHH-HHHhcCc-cc-----cCHHHHHHHHHHHHHHHHHHhc---CHHH
Confidence 455566666766665544444332 345555555 6665542 11 1224577777888777776653 2467
Q ss_pred HHHHHHHHH------HHHhhhhccchhhhhcCC----CcchhHHHHHHHhhc--CCchhHHHHHHHHHHHHh
Q psy17474 253 ITSIVDCLF------VRKQAIKDLPSLCKENNE----YTPKVTDILGQLLQT--NDTTELSVVQSSIMTLCK 312 (343)
Q Consensus 253 lesi~d~LL------~r~qAik~lp~~c~~~~~----~~~~v~diL~Qll~~--d~~~e~~~v~~sl~~l~~ 312 (343)
++.++..++ ++..|...+=.+|++-++ |++.+-+.|.++++. -+..+...+-.++..++.
T Consensus 544 l~~vl~~l~~~l~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 544 IPPAINLLVRGLNSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 777777666 566677777788876554 455566666777877 356777777788888775
No 68
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=87.00 E-value=1.7 Score=40.44 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH---------HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCc
Q psy17474 227 DNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDT 297 (343)
Q Consensus 227 ~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL---------~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~ 297 (343)
+.|++.|+..-|+.-+- -|.++++.++.++ +|++-+.=+-..|+..+++++++.+.|.-||..+|+
T Consensus 30 ~~kl~~L~qa~el~~~~-----dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS-----CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTT-----TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHcc-----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 58999999999987653 1557777777777 799988888899999999999999999999986665
Q ss_pred hhHHHHHHHHHH
Q psy17474 298 TELSVVQSSIMT 309 (343)
Q Consensus 298 ~e~~~v~~sl~~ 309 (343)
.++++++.+
T Consensus 105 ---~V~K~~I~~ 113 (257)
T 3gs3_A 105 ---QVIKRVIQA 113 (257)
T ss_dssp ---HHHHHHHHH
T ss_pred ---HHHHHHHHH
Confidence 455555543
No 69
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=85.75 E-value=14 Score=40.12 Aligned_cols=210 Identities=13% Similarity=0.140 Sum_probs=106.1
Q ss_pred HHHHHHHhhcc--ccchhHHHHHh----hhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhH
Q psy17474 3 QAIEALFDLCE--DEDVSVRKQAI----KDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGAL 76 (343)
Q Consensus 3 ~Ai~a~lDLcE--DeD~~IR~qAI----k~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL 76 (343)
++..+++..++ ..+..||=.+. |.++-+..+---+++++++.|.+-+...+-.++-..-+-++.-|+.+-...|
T Consensus 699 ~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l 778 (980)
T 3ibv_A 699 KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEIT 778 (980)
T ss_dssp HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666 44555654443 4556666666678888888888777788888888888888888988876666
Q ss_pred HHHHHhhhc-----------CCchHH------HHHHHHhhHhhhhhhhhhchHHH-HHHHHHHHHHhcc---cCChhH-H
Q psy17474 77 KGMFNLIEI-----------SNGPVR------EKCLRFLVPKIKMLGRDIMTKEI-EEYTIDQCKKILR---NVTGDE-F 134 (343)
Q Consensus 77 ~~lf~qI~~-----------~de~vR------e~~lkFl~~kl~~l~~~ll~~E~-E~~i~~~ikKvL~---dVT~~E-F 134 (343)
..+|..+.+ |+|..| +--+.|+..-++.--..++.+|. ...+-..+..+++ +++... -
T Consensus 779 ~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~ 858 (980)
T 3ibv_A 779 NRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQ 858 (980)
T ss_dssp HHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHH
Confidence 666555432 333344 44467887766643334443332 2222222233332 221111 1
Q ss_pred HHHHHHHhhc-ccc---cChHHH-HHHHHHHHHHh---ccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHH
Q psy17474 135 MQIMDLLAWS-RLS---QSLAGQ-KELMEIIKHHA---ELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLC 206 (343)
Q Consensus 135 ~l~m~lL~~l-~~~---~t~~g~-qeLv~li~eqa---~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~ 206 (343)
++-+.+|..+ +.+ ...+|- +-+++ +.--+ =++..||++|..+.-=+-.+..--.-++.+. +..|++|+-
T Consensus 859 K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~--g~~~~~~l~ 935 (980)
T 3ibv_A 859 KSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKL--GDIYKSYLV 935 (980)
T ss_dssp HHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHH
Confidence 2233333321 122 226664 44566 43322 2788999999986532222222222222232 368999999
Q ss_pred HhhcCCCCC
Q psy17474 207 EQVLPKLDQ 215 (343)
Q Consensus 207 ~~vlP~l~~ 215 (343)
+..+|.++-
T Consensus 936 ~~~lp~~~~ 944 (980)
T 3ibv_A 936 TVYFPTVNF 944 (980)
T ss_dssp HTTTTC---
T ss_pred HhcCCcCCC
Confidence 999998863
No 70
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=85.46 E-value=38 Score=35.26 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=46.2
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhh---ccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhh
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCK---ENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKN 70 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck---~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~ 70 (343)
+.+..+..++++ .+.||..++..+.++|+ +++++++.+...|.+.|+. +.=....-.+|..+.+.
T Consensus 490 ~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 490 GLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRE 557 (963)
T ss_dssp HHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHH
Confidence 456666778874 67899999999988876 4567888888888888854 32234455666666653
No 71
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.44 E-value=1.7 Score=42.89 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHH-----HHHhhhhccchhhhhcCCCcchhHHHHHHHhhcCCchhHH
Q psy17474 227 DNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLF-----VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELS 301 (343)
Q Consensus 227 ~~kl~lLK~lAEls~~~~~~e~~pqllesi~d~LL-----~r~qAik~lp~~c~~~~~~~~~v~diL~Qll~~d~~~e~~ 301 (343)
+.|++.|+..-|+.-+-. -+-.++.++.+++... +|+..+.=+=..|+..+|+++++.+.|.-||..+|+.=+.
T Consensus 40 ~~Kl~~L~q~~EL~l~~d-psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKD-PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp THHHHHHHHHHHHHHTTC-GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 479999999999866531 1123444444443322 8999888899999999999999999999999877764333
Q ss_pred HHHHHHHHHH
Q psy17474 302 VVQSSIMTLC 311 (343)
Q Consensus 302 ~v~~sl~~l~ 311 (343)
.+=.+..+||
T Consensus 119 ~~I~~~tslY 128 (386)
T 3o2t_A 119 KAILTMTQLY 128 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444455
No 72
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=82.77 E-value=1.5 Score=41.91 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=55.4
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhh-----HhHHHHhhccCChhHHHHHHHHHHHHHhhCh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKV-----TDILGQLLQTNDTTELSVVQSSIMTLCKNDI 72 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~ki-----aDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp 72 (343)
+|..+++|..+.+..+++.|...|..+|..+++....+ ...|++||++.++.-....-.+|..|..-+|
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 57778888888888999999999999998777776655 4678999988877666677777777777666
No 73
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=81.22 E-value=7.2 Score=35.42 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=65.8
Q ss_pred HHHHHHhhccccch--hHHHHHhhhhhhhhhccCCcchhhH-----hHHHHhhccCChhHHHHHHHHHHHHHhhCh----
Q psy17474 4 AIEALFDLCEDEDV--SVRKQAIKDLPSLCKENNEYTPKVT-----DILGQLLQTNDTTELSVVQSSIMTLCKNDI---- 72 (343)
Q Consensus 4 Ai~a~lDLcEDeD~--~IR~qAIk~Lp~lck~~~e~v~kia-----DVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp---- 72 (343)
.|..++.+-..+|+ .++..|...|-.+|++++++...|+ -.|+++|.++++.=....-++|..|-.-++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35566777777777 8899999999999998877766554 478999999876655666677777655444
Q ss_pred ----hhhHHHHHHhhhc-CCchHHHHHHH
Q psy17474 73 ----KGALKGMFNLIEI-SNGPVREKCLR 96 (343)
Q Consensus 73 ----k~tL~~lf~qI~~-~de~vRe~~lk 96 (343)
.|.+..+...+.+ +++.+|+.+..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~ 117 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITG 117 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHH
Confidence 3455556666653 56677776653
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=80.48 E-value=5.9 Score=38.40 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=33.6
Q ss_pred HHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCCh
Q psy17474 6 EALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDT 54 (343)
Q Consensus 6 ~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~ 54 (343)
..+-....|.++-||+.|+=....++..+||.+.+..+-+..++...++
T Consensus 142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~ 190 (355)
T 3tjz_B 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNI 190 (355)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCc
Confidence 3344556677777777777777777777777777777777777765554
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=80.32 E-value=15 Score=34.58 Aligned_cols=97 Identities=21% Similarity=0.178 Sum_probs=63.3
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhC-hhhhHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKND-IKGALKGMF 80 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~D-pk~tL~~lf 80 (343)
+..++|+.|+....+.-.|--|.-.+..+ .-....+||.|+|..|+.|.|+..-.+-=.+|.++-... -++.+..+|
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~ 191 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLIL 191 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTT
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 35677888888877777788887777777 223448888888888887777666555555555444322 123455555
Q ss_pred Hhhh----cCCchHHHHHHHHhhH
Q psy17474 81 NLIE----ISNGPVREKCLRFLVP 100 (343)
Q Consensus 81 ~qI~----~~de~vRe~~lkFl~~ 100 (343)
+.|. +.|+.+|+++|.-+-.
T Consensus 192 ~eI~elL~~eD~~l~e~aLd~Le~ 215 (265)
T 3b2a_A 192 DEIPSLLQNDNEFIVELALDVLEK 215 (265)
T ss_dssp TTHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5543 4566788887776654
No 76
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=78.15 E-value=4.6 Score=38.56 Aligned_cols=97 Identities=16% Similarity=0.107 Sum_probs=58.6
Q ss_pred HHHHHHHhhccccch----hHHHHHhhhhhhhhh---ccCCcchhhH-----hHHHHhhccCChhHHHHHHHHHHHHHhh
Q psy17474 3 QAIEALFDLCEDEDV----SVRKQAIKDLPSLCK---ENNEYTPKVT-----DILGQLLQTNDTTELSVVQSSIMTLCKN 70 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~----~IR~qAIk~Lp~lck---~~~e~v~kia-----DVL~QLLqtdd~~E~~~V~~sL~~Llk~ 70 (343)
.|+..+..|..+.+. .|+..|...|-.+|. .++++...+. ..|+++|.+.+..-....-.+|..+-..
T Consensus 214 Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 293 (354)
T 3nmw_A 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 293 (354)
T ss_dssp THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC
Confidence 467777777765543 488888888888886 5677766554 4688888877655444444444444433
Q ss_pred Ch--------hhhHHHHHHhhhcCCchHHHHHHHHhh
Q psy17474 71 DI--------KGALKGMFNLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 71 Dp--------k~tL~~lf~qI~~~de~vRe~~lkFl~ 99 (343)
++ .|.+..|..-+.++++.+|+.+..-|.
T Consensus 294 ~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 294 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33 233444444444556666665544444
No 77
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=77.41 E-value=2.7 Score=41.90 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=56.3
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhh-----HhHHHHhhccCChhHHHHHHHHHHHHHhhCh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKV-----TDILGQLLQTNDTTELSVVQSSIMTLCKNDI 72 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~ki-----aDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp 72 (343)
+|..++.|..+.+..++++|...|..+|..+++....+ ...|.+||++.++.-....-.+|..|..-+|
T Consensus 380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 56778888888888999999999999998778877666 4568999998887767777788888877666
No 78
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=75.73 E-value=8.7 Score=37.19 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=53.3
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhH-----hHHHHhhc-cCChhHHHHHHHHHHHHHh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVT-----DILGQLLQ-TNDTTELSVVQSSIMTLCK 69 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kia-----DVL~QLLq-tdd~~E~~~V~~sL~~Llk 69 (343)
+|..++.+...+++.++..|...|-.++.+++++...|+ ..|+++|. +.++.-...+-++|..|-.
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc
Confidence 677889999999999999999999999998888877774 58999999 7776555566666665544
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=73.26 E-value=58 Score=30.08 Aligned_cols=120 Identities=15% Similarity=0.223 Sum_probs=90.9
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHH-HHHHHHHHHHHhhCh---hhhHHH
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTEL-SVVQSSIMTLCKNDI---KGALKG 78 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~-~~V~~sL~~Llk~Dp---k~tL~~ 78 (343)
+-+++++-+-+|+==.||++||.-+..+.+..|+...-..+=|--||..++..-+ ..+-+++=++-+..| +.+...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~ 111 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPV 111 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHH
Confidence 4567788888877668999999999999999999999999999989998888777 678899999999999 677888
Q ss_pred HHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhccc
Q psy17474 79 MFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRN 128 (343)
Q Consensus 79 lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~d 128 (343)
+|-...-||+.+|-.+ .+.-+.++.. +|+.-.-+...+-..+.+
T Consensus 112 lfanyrigd~kikIn~-~yaLeeIara-----nP~l~~~v~rdi~smlts 155 (253)
T 2db0_A 112 LFANYRIGDEKTKINV-SYALEEIAKA-----NPMLMASIVRDFMSMLSS 155 (253)
T ss_dssp HHHHSCCCSHHHHHHH-HHHHHHHHHH-----CHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCccceecH-HHHHHHHHHh-----ChHHHHHHHHHHHHHhcC
Confidence 9999888988877543 2333333322 334444455555555553
No 80
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=69.84 E-value=10 Score=37.73 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=42.8
Q ss_pred HHHHHHHhhccccch----hHHHHHhhhhhhhhh---ccCCcchhhH-----hHHHHhhccCChhHHHHHHHHHHHHH
Q psy17474 3 QAIEALFDLCEDEDV----SVRKQAIKDLPSLCK---ENNEYTPKVT-----DILGQLLQTNDTTELSVVQSSIMTLC 68 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~----~IR~qAIk~Lp~lck---~~~e~v~kia-----DVL~QLLqtdd~~E~~~V~~sL~~Ll 68 (343)
.|+..+..|....+. .|++.|...|-.+|. .++++...+. -.|+++|.+.+..-....-++|..+-
T Consensus 330 Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp THHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 366677777765543 488888888888886 6777766654 45788888776543333334444443
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=69.61 E-value=72 Score=29.63 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHH
Q psy17474 154 KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEAL 233 (343)
Q Consensus 154 qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lL 233 (343)
..++..+.++.|=.+ +++-.-++.++..+..-.+.++++.|+++.+-.+ + + ..|.+.|
T Consensus 131 ~~~lP~LveKlGd~k----------~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksK-N----~-------R~R~e~l 188 (266)
T 2of3_A 131 SAFVPYLLLKTGEAK----------DNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSK-N----A-------RQRSECL 188 (266)
T ss_dssp HHHHHHHHHGGGCSS----------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCS-C----H-------HHHHHHH
T ss_pred HHHHHHHHHHhCCCh----------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccC-C----H-------HHHHHHH
Confidence 557788887764221 2333333333333444457789999999854321 1 1 4688999
Q ss_pred HHHHhhcCCCCCCCCchhhH---HHHHHHHH------HHHhhhhccchhhhhcCC
Q psy17474 234 KLLAELSPFYVVHEDTPQHI---TSIVDCLF------VRKQAIKDLPSLCKENNE 279 (343)
Q Consensus 234 K~lAEls~~~~~~e~~pqll---esi~d~LL------~r~qAik~lp~~c~~~~~ 279 (343)
..++.+.+-.|.. +...+ ..+- .++ +|..|+.-+-.+.+..++
T Consensus 189 ~~l~~li~~~G~~--~~~~l~~~~~ia-~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 189 LVIEYYITNAGIS--PLKSLSVEKTVA-PFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHHHHHHHCSG--GGGGGCHHHHHG-GGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCC--ccccccchHHHH-HHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 9999998888854 33333 2222 222 677777777666665554
No 82
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=69.33 E-value=12 Score=38.48 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=68.7
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhH-----hHHHHhhccCChhHHHHHHHHHHHHHhh-Ch----
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVT-----DILGQLLQTNDTTELSVVQSSIMTLCKN-DI---- 72 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kia-----DVL~QLLqtdd~~E~~~V~~sL~~Llk~-Dp---- 72 (343)
.+|..++.+-...|..++..|...|-.+|..++++...|+ -.|++||.++++.=....-++|..|-.- ++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3577888888888999999999999999998777766554 4799999998876666777777777653 22
Q ss_pred ----hhhHHHHHHhhhc-CCchHHHHHH
Q psy17474 73 ----KGALKGMFNLIEI-SNGPVREKCL 95 (343)
Q Consensus 73 ----k~tL~~lf~qI~~-~de~vRe~~l 95 (343)
.|.+..|...+.+ +++.+++.+.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa 155 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVIT 155 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHH
Confidence 3556667666665 3556666643
No 83
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=64.90 E-value=82 Score=29.22 Aligned_cols=120 Identities=17% Similarity=0.110 Sum_probs=78.6
Q ss_pred HHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChh---HHHHHHHHHHHHHhhChhhhH---HHHH
Q psy17474 7 ALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTT---ELSVVQSSIMTLCKNDIKGAL---KGMF 80 (343)
Q Consensus 7 a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~---E~~~V~~sL~~Llk~Dpk~tL---~~lf 80 (343)
++++=+=|.-..||.++..-+-.+|+-. =-+++.+.+..-+.+-++. |.-..=.++++-+-+.|...+ ..+.
T Consensus 136 ~LveKlGd~k~~vR~~~r~il~~l~~v~--~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia 213 (266)
T 2of3_A 136 YLLLKTGEAKDNMRTSVRDIVNVLSDVV--GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVA 213 (266)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHH
Confidence 4566666666678887777666666532 2567888888888887773 333344455555555577777 7777
Q ss_pred HhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHH
Q psy17474 81 NLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLL 141 (343)
Q Consensus 81 ~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL 141 (343)
.++...|..||+-+++-+.+-.+-.+. .+.|.++++++....++-+=+
T Consensus 214 ~ll~D~d~~VR~aAl~~lve~y~~~Gd-------------~v~k~lg~L~~~~~~~l~er~ 261 (266)
T 2of3_A 214 PFVGDKDVNVRNAAINVLVACFKFEGD-------------QMWKAAGRMADKDKSLVEERI 261 (266)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHHHHTT-------------HHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhhH-------------HHHHHHhcCCHHHHHHHHHHH
Confidence 888778889999999988854443333 334555666666665554433
No 84
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=64.79 E-value=10 Score=34.38 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=42.6
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhH-----hHHHHhhc-cCChh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVT-----DILGQLLQ-TNDTT 55 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kia-----DVL~QLLq-tdd~~ 55 (343)
+|-.+++|-..++..+|.+|...|-.++.+++++...|+ ..|+++|. +.+..
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~ 110 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLE 110 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHH
Confidence 678889999999999999999999999998887766654 56899997 45543
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=64.61 E-value=5.7 Score=43.62 Aligned_cols=48 Identities=31% Similarity=0.363 Sum_probs=22.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCCc-chhhHhHHHHhhc
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEY-TPKVTDILGQLLQ 50 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~-v~kiaDVL~QLLq 50 (343)
+||+.+-.|..|.|..||..|+-+|..+...+++- .+|++.+|.||+.
T Consensus 647 ~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~ 695 (963)
T 4ady_A 647 SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLS 695 (963)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 34444444444445555555555555444443332 3444444444443
No 86
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=64.43 E-value=20 Score=37.83 Aligned_cols=98 Identities=22% Similarity=0.247 Sum_probs=68.4
Q ss_pred HHHHHHHhhccccchhHHHHHhhhhhhhhhccCC-cchhh------HhHHHHhhccCChhHHHHHHHHHHHHHhhChh--
Q psy17474 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNE-YTPKV------TDILGQLLQTNDTTELSVVQSSIMTLCKNDIK-- 73 (343)
Q Consensus 3 ~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e-~v~ki------aDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk-- 73 (343)
+.|..++++-+.+|-.+|..|++-|-.+|..+|+ +..-| .--|+.+|.++...=++..---|+.|-+.++.
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence 5678899999999999999999999999999888 43333 33466677644322233333455677777775
Q ss_pred ------hhHHHHHHhhhcCCc----hHHHHHHHHhhH
Q psy17474 74 ------GALKGMFNLIEISNG----PVREKCLRFLVP 100 (343)
Q Consensus 74 ------~tL~~lf~qI~~~de----~vRe~~lkFl~~ 100 (343)
|++..+|+-|..+.. .+=+.|+..+..
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 888999998875322 455677666653
No 87
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=64.19 E-value=26 Score=31.04 Aligned_cols=91 Identities=10% Similarity=-0.049 Sum_probs=61.6
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLI 83 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI 83 (343)
...-+...+.+++.-+|+.||-.+-...+. .+...+-.++..++.+++-==..+|-|+|.++.|-||..+..=+ |-
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~--~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl--~~ 200 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQLMLKEK--TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM--KE 200 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH--HH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH--hh
Confidence 345578899999999999998887655332 45566666777777666655566899999999999997766655 32
Q ss_pred hcCCchHHHHHHHHh
Q psy17474 84 EISNGPVREKCLRFL 98 (343)
Q Consensus 84 ~~~de~vRe~~lkFl 98 (343)
..-+..++.++++.+
T Consensus 201 ~~l~~~~~r~Aikkl 215 (220)
T 2b6c_A 201 LVLSPLAQREGSKYL 215 (220)
T ss_dssp SCCCHHHHHHHTTTS
T ss_pred ccCCHHHHHHHHHhc
Confidence 122334445554444
No 88
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=63.16 E-value=14 Score=40.49 Aligned_cols=155 Identities=12% Similarity=0.199 Sum_probs=95.4
Q ss_pred hHHHHHHHhhcc-ccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHH
Q psy17474 2 DQAIEALFDLCE-DEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMF 80 (343)
Q Consensus 2 e~Ai~a~lDLcE-DeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf 80 (343)
..||..++..|- |.+..||+.|+-+|..++-++++.++|+.+. |+++.|+.=+..+-.||--+---+|....-.+.
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~---L~~~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQL---LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT---GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 368899998875 4455799999999999988888877776654 456777765666666666655555543233344
Q ss_pred Hhhhc-CCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhh-----------ccccc
Q psy17474 81 NLIEI-SNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAW-----------SRLSQ 148 (343)
Q Consensus 81 ~qI~~-~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~-----------l~~~~ 148 (343)
..+.. .|+.||..++.-+.. +..-..+-..|-+..+... +.+...|-..+.-..|+-.+.+ +..+.
T Consensus 653 ~~L~~D~d~~Vrq~Ai~ALG~-Ig~gtnna~~~rva~~l~~-L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~ 730 (963)
T 4ady_A 653 DPLTKDPVDFVRQAAMIALSM-ILIQQTEKLNPQVADINKN-FLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLEN 730 (963)
T ss_dssp HHHHTCSSHHHHHHHHHHHHH-HSTTCCTTTCTTHHHHHHH-HHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBC
T ss_pred HHHccCCCHHHHHHHHHHHHH-HhcCCccccchHHHHHHHH-HHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 44443 577899888766553 2222223333344444433 4466665444566667776652 44444
Q ss_pred ChHH---HHHHHHHHH
Q psy17474 149 SLAG---QKELMEIIK 161 (343)
Q Consensus 149 t~~g---~qeLv~li~ 161 (343)
+-.| ...++.++.
T Consensus 731 s~~~~~~~~a~~Gl~~ 746 (963)
T 4ady_A 731 ADTGTLDTKSVVGLVM 746 (963)
T ss_dssp TTTCCBCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHH
Confidence 5555 456666665
No 89
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=63.02 E-value=1.8e+02 Score=31.76 Aligned_cols=247 Identities=14% Similarity=0.156 Sum_probs=122.3
Q ss_pred chhhHhHHHHhhccC-Ch--hHHHHHHHHHHHHHhhChhhhHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHH
Q psy17474 38 TPKVTDILGQLLQTN-DT--TELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEI 114 (343)
Q Consensus 38 v~kiaDVL~QLLqtd-d~--~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~ 114 (343)
...+.++|.+|-+.. +. .+....=.-|+++++.=+...|..++.++.+. +..|. ++.+ .-...-++++
T Consensus 287 ~~~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~lR~~~~e~L~~l~~~~~~~-~~~r~----~~lD----al~~aGT~~a 357 (1056)
T 1lsh_A 287 ESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQ-KDYRR----WILD----AVPAMATSEA 357 (1056)
T ss_dssp HHHHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHTTSCHHHHHHHHHHHTTS-HHHHH----HHHH----HHHHHCSHHH
T ss_pred HHHHHHHHHHHHhccccccCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-HHHHH----HHHH----HhHhcCCHHH
Confidence 345666666665522 11 22222334577889999999999999998643 33332 2222 2233446688
Q ss_pred HHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHHHHHHHHHhccCCCCCCCCchhhhh--HHhhHHhhhhhh
Q psy17474 115 EEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDR--SIYCSLHCVPYL 192 (343)
Q Consensus 115 E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~eqa~Ld~~f~~sD~e~vdR--li~C~~~Alp~f 192 (343)
=.++.+.|++ +++|+.|+...+..+..+. .|+ .++++.+.+-+..... .+++ .+.+ ++.-..++-.|+
T Consensus 358 ~~~i~~~i~~--~~l~~~ea~~~l~~~~~~~---~Pt--~e~l~~~~~l~~~~~~--~~~~-~l~~ta~La~gslV~k~c 427 (1056)
T 1lsh_A 358 LLFLKRTLAS--EQLTSAEATQIVASTLSNQ---QAT--RESLSYARELLNTSFI--RNRP-ILRKTAVLGYGSLVFRYC 427 (1056)
T ss_dssp HHHHHHHHHT--TCSCHHHHHHHHHHHHHTC---CCC--HHHHHHHHHHHTCHHH--HTCH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhhccC---CCC--HHHHHHHHHHHhCccc--ccCH-HHHHHHHHHHHHHHHHHh
Confidence 8888888766 7899999854433333222 233 3444444443332210 0111 1111 333334444444
Q ss_pred ccC-CCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHH----HH-HHHHHHHhh
Q psy17474 193 CSA-IPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITS----IV-DCLFVRKQA 266 (343)
Q Consensus 193 S~~-v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqlles----i~-d~LL~r~qA 266 (343)
..+ .-+.+.+.++-+.+...++. ++.+.++=.||.|.=+--- ..++-...+++. .- ...-+|..|
T Consensus 428 ~~~~~c~~~~v~~i~~~l~~~~~~--------~~~~~~~~~LkaLGN~g~p-~~l~~l~~~l~~~~~~~~~~~~rvr~aA 498 (1056)
T 1lsh_A 428 ANTVSCPDELLQPLHDLLSQSSDR--------AKEEEIVLALKALGNAGQP-NSIKKIQRFLPGQGKSLDEYSTRVQAEA 498 (1056)
T ss_dssp TTCSSCCGGGTHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTCG-GGHHHHHTTSTTSSSCCCCSCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhc--------CChHHHHHHHHHhhccCCh-hHHHHHHHhhcCccccccccchHHHHHH
Confidence 332 11334444444443332221 1124566677777655320 000000000000 00 011366778
Q ss_pred hhccchhhhhcCCCcchhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhchhh
Q psy17474 267 IKDLPSLCKENNEYTPKVTDILGQLLQ-TNDTTELSVVQSSIMTLCKNDIKV 317 (343)
Q Consensus 267 ik~lp~~c~~~~~~~~~v~diL~Qll~-~d~~~e~~~v~~sl~~l~~~d~~~ 317 (343)
|..|-.+.. .+-.++-+||-|++. ...+.|+-. -|+..|++.+|..
T Consensus 499 i~ALr~~~~---~~p~~v~~il~~i~~n~~e~~EvRi--aA~~~Lm~t~P~~ 545 (1056)
T 1lsh_A 499 IMALRNIAK---RDPRKVQEIVLPIFLNVAIKSELRI--RSCIVFFESKPSV 545 (1056)
T ss_dssp HHTTTTGGG---TCHHHHHHHHHHHHHCTTSCHHHHH--HHHHHHHHTCCCH
T ss_pred HHHHHHhhh---hchHHHHHHHHHHhcCCCCChHHHH--HHHHHHHHHCcCH
Confidence 888777765 233467788888774 555556544 3666677766644
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=60.19 E-value=70 Score=28.31 Aligned_cols=94 Identities=12% Similarity=0.256 Sum_probs=59.3
Q ss_pred cccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHh------hChhhhHHHHHHhhh--
Q psy17474 13 EDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCK------NDIKGALKGMFNLIE-- 84 (343)
Q Consensus 13 EDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk------~Dpk~tL~~lf~qI~-- 84 (343)
-|.-..+|..|+..+-.++... -....+.+.+...++.-.|.=+...-+.|..+++ .+|+..+..+...+.
T Consensus 113 ~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~ 191 (278)
T 4ffb_C 113 TSSRATTKTQSMSCILSLCGLD-TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQL 191 (278)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHH
Confidence 4556678888888887777542 3356677777788888887544444444444443 345666666655553
Q ss_pred --cCCchHHHHHHHHhhHhhhhhhh
Q psy17474 85 --ISNGPVREKCLRFLVPKIKMLGR 107 (343)
Q Consensus 85 --~~de~vRe~~lkFl~~kl~~l~~ 107 (343)
..+..||+-+++++.+=.+-++.
T Consensus 192 l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 192 AGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 46779999999988765444443
No 91
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=57.27 E-value=52 Score=30.38 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=69.9
Q ss_pred HHHHhh-ccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhhh
Q psy17474 6 EALFDL-CEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIE 84 (343)
Q Consensus 6 ~a~lDL-cEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~ 84 (343)
..++-+ --+|-.-.-..--|.+.++.+.+|+.+.+++-+|--=+...|+.-.--+.-+|-.+.+-+|. .++++|..|.
T Consensus 72 ~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~-l~~~v~rdi~ 150 (253)
T 2db0_A 72 KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM-LMASIVRDFM 150 (253)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHH
T ss_pred HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH-HHHHHHHHHH
Confidence 333333 33443333334458899999999999999999998888877887777788999999999994 4566666654
Q ss_pred ----cCCchHHHHHHHHhhH
Q psy17474 85 ----ISNGPVREKCLRFLVP 100 (343)
Q Consensus 85 ----~~de~vRe~~lkFl~~ 100 (343)
+.|+.=|.-+++||..
T Consensus 151 smltskd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 151 SMLSSKNREDKLTALNFIEA 170 (253)
T ss_dssp HHTSCSSHHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHH
Confidence 4577788899999984
No 92
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=57.25 E-value=1.5e+02 Score=29.22 Aligned_cols=62 Identities=18% Similarity=0.396 Sum_probs=44.5
Q ss_pred CCCchhhHHHHHHHHHHHHhhhhcc-chhhhhcCCCcch--hHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q psy17474 246 HEDTPQHITSIVDCLFVRKQAIKDL-PSLCKENNEYTPK--VTDILGQLLQTNDTTELSVVQSSIMTLCK 312 (343)
Q Consensus 246 ~e~~pqllesi~d~LL~r~qAik~l-p~~c~~~~~~~~~--v~diL~Qll~~d~~~e~~~v~~sl~~l~~ 312 (343)
+|.+=.|+.-+|+.++-.... .++ |.++| .|+.. |..+| .++.|+|+.|...++.-|..+|.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s-~~f~~~~~k---~~id~~Fi~~Ll-~lfdSeDprER~~LktiLhrIY~ 158 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLES-PDFQPNIAK---KYIDQKFVLQLL-ELFDSEDPRERDFLKTTLHRIYG 158 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHC-TTCCHHHHT---TTSCHHHHHHHH-HGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhc-cccChhhHH---hhcCHHHHHHHH-HHcCCCChHHHHHHHHHHHHHHH
Confidence 566778999999998754331 123 55555 55554 44544 49999999999999998888774
No 93
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=56.52 E-value=2e+02 Score=30.25 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=46.2
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhc-c----------C----CcchhhHhHHHHhhccCC-----hhHHHHHH
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKE-N----------N----EYTPKVTDILGQLLQTND-----TTELSVVQ 61 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~-~----------~----e~v~kiaDVL~QLLqtdd-----~~E~~~V~ 61 (343)
+..+.+++....|++..||..|..+|-.||.. + + .|++.+...|.++++... ..|...+-
T Consensus 495 ~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~ 574 (960)
T 1wa5_C 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM 574 (960)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHH
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHH
Confidence 35677788888888899999999999999973 1 1 234555555556666541 12455667
Q ss_pred HHHHHHHhh
Q psy17474 62 SSIMTLCKN 70 (343)
Q Consensus 62 ~sL~~Llk~ 70 (343)
.+|+++...
T Consensus 575 ~al~~vv~~ 583 (960)
T 1wa5_C 575 RSIFRVLQT 583 (960)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=56.11 E-value=1.1e+02 Score=32.52 Aligned_cols=235 Identities=9% Similarity=0.037 Sum_probs=119.0
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhc---cCC-------cchhhHhHHHHhhcc-C-------Chh----------
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKE---NNE-------YTPKVTDILGQLLQT-N-------DTT---------- 55 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~---~~e-------~v~kiaDVL~QLLqt-d-------d~~---------- 55 (343)
.++-++.....+|..|+..++.....+|.+ .|. +++++.+++.+.+.- + |+.
T Consensus 345 ~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~ 424 (1049)
T 3m1i_C 345 AHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKES 424 (1049)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccc
Confidence 345566666677888999999888888872 133 345555555554431 1 111
Q ss_pred ----HHHHHHHHHHHHHhhChhhhHHHHHHhhhc---C-Cc--hHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHh
Q psy17474 56 ----ELSVVQSSIMTLCKNDIKGALKGMFNLIEI---S-NG--PVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKI 125 (343)
Q Consensus 56 ----E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~~---~-de--~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKv 125 (343)
.+...+..|..+.+..+..++..++..+.+ + .. ..||-++--+. . +. +.+..+.|..+...+...
T Consensus 425 d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~alg-s---ia-~~~~~~~e~~~l~~v~~~ 499 (1049)
T 3m1i_C 425 DTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIG-S---IS-GTMSEDTEKRFVVTVIKD 499 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH-H---TT-TSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-H---Hh-cccCchhhHHHHHHHHHH
Confidence 134678888889999998888877776642 2 22 34555443333 1 11 112223333222222222
Q ss_pred cc---cC-Ch-hH-H--H-HHHHHHhhcccc--cChHHHHHHHHHHHHHhccCCCCCCCCch-------hhhhHHhhHHh
Q psy17474 126 LR---NV-TG-DE-F--M-QIMDLLAWSRLS--QSLAGQKELMEIIKHHAELSKSFDPSNPE-------DVDRSIYCSLH 187 (343)
Q Consensus 126 L~---dV-T~-~E-F--~-l~m~lL~~l~~~--~t~~g~qeLv~li~eqa~Ld~~f~~sD~e-------~vdRli~C~~~ 187 (343)
+. .. ++ .. . . .+|.+++++..+ ..+.--..+++.+.+- +.. .++. .+.|+..-.+.
T Consensus 500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~--l~~----~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEF--MHE----THEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH--TTS----SCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--hcC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 21 11 11 11 1 1 256667665544 1221124455555542 321 1221 22333332221
Q ss_pred hhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCCCCCCCCchhhHHHHHH
Q psy17474 188 CVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVD 258 (343)
Q Consensus 188 Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~~~~~e~~pqllesi~d 258 (343)
.+.- ......++|+..+.+++...++++.. +....+.+.++.++...|+.+..+..++.+..
T Consensus 574 ~l~~-~~~~~~~p~~~~il~~l~~~~~~~~~--------~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~ 635 (1049)
T 3m1i_C 574 HFVI-QQPRESEPFIQTIIRDIQKTTADLQP--------QQVHTFYKACGIIISEERSVAERNRLLSDLMQ 635 (1049)
T ss_dssp HHHS-CCTTCSSCHHHHHHHTHHHHHTTSCH--------HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTH
T ss_pred Hhhc-ccCCCCCcHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1100 01111248888888887776666432 45678889999998777633334444544433
No 95
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=55.77 E-value=36 Score=35.06 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=49.8
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhc-cCCcchhh-----HhHHHHhhccCChhH-HHHHHHHHHHHHh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKE-NNEYTPKV-----TDILGQLLQTNDTTE-LSVVQSSIMTLCK 69 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~-~~e~v~ki-----aDVL~QLLqtdd~~E-~~~V~~sL~~Llk 69 (343)
+|-.++.|...++..+|.+|...|-.+|.+ ++++-..| ...|+++|.+....| ...+..+|..|=.
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 678899999999999999999999999985 56665555 567899999754444 4555556655533
No 96
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=51.97 E-value=1.7e+02 Score=28.15 Aligned_cols=174 Identities=12% Similarity=0.246 Sum_probs=102.3
Q ss_pred cccchhHHHHHhhhhhhhhhccC-----------CcchhhHhHHHHhhccCChhHHHHHHHHHHHHHh---hChh-----
Q psy17474 13 EDEDVSVRKQAIKDLPSLCKENN-----------EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCK---NDIK----- 73 (343)
Q Consensus 13 EDeD~~IR~qAIk~Lp~lck~~~-----------e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk---~Dpk----- 73 (343)
...++.+|-+|.+=|..==++|| .++..+.+-|.++....+. ...++.+..++++. ++|.
T Consensus 80 ~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~-~~~~l~KR~LsII~~L~~~~~~F~~~ 158 (315)
T 3qml_C 80 ENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHR-SSNILIKRYLSILNELPVTSEDLPIY 158 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHSCCCSTTC--C
T ss_pred ccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHhcChHhhhhc
Confidence 44556789888886665555544 5555666656665532111 12355555554432 3322
Q ss_pred --hhHHHHHHhhhcCCchHHHHHHHHhhHhhhh-hhhh------hch-------HHHHHHHHHHHHHhcccC--ChhHHH
Q psy17474 74 --GALKGMFNLIEISNGPVREKCLRFLVPKIKM-LGRD------IMT-------KEIEEYTIDQCKKILRNV--TGDEFM 135 (343)
Q Consensus 74 --~tL~~lf~qI~~~de~vRe~~lkFl~~kl~~-l~~~------ll~-------~E~E~~i~~~ikKvL~dV--T~~EF~ 135 (343)
.+|..+|. +.+.++.++.|++..+..-... ++.. +-+ |++++ ...++-+.+|+- +...|.
T Consensus 159 ~m~~L~~ly~-~~~~d~~~k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~-w~~~~q~~iq~k~~dE~~~r 236 (315)
T 3qml_C 159 STVVLQNVYE-RNNKDKQLQIKVLELISKILKADMYENDDTNLILFKRNAENWSSNLQE-WANEFQEMVQNKSIDELHTR 236 (315)
T ss_dssp CHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHTTC-------------------CHH-HHHHHHHHHTCTTSCHHHHH
T ss_pred cHHHHHHHHc-cCCCCHHHHHHHHHHHHHHcccccccccccccchhhhcccccCchHHH-HHHHHHHHHhccccCHHHHH
Confidence 46777775 3234789999999999865432 2222 211 22332 345566688844 344678
Q ss_pred HHHHHHhhccc-c-cChHHHHHHHHHHHHHhc-----cCCCCCC--CCchhhhhHHhhHHhhh
Q psy17474 136 QIMDLLAWSRL-S-QSLAGQKELMEIIKHHAE-----LSKSFDP--SNPEDVDRSIYCSLHCV 189 (343)
Q Consensus 136 l~m~lL~~l~~-~-~t~~g~qeLv~li~eqa~-----Ld~~f~~--sD~e~vdRli~C~~~Al 189 (343)
.|++-|..+|. + +.+..-...++.++++++ +...... .+.+..||.+--.||.+
T Consensus 237 ~fF~~L~~ik~~~~~~lK~~~~FLnWLa~E~e~Rk~~~~~~~~~rd~eq~~FD~~li~sRH~V 299 (315)
T 3qml_C 237 TFFDTLYNLKKIFKSDITINKGFLNWLAQQCKARQSNLDNGLQERDTEQDSFDKKLIDSRHLI 299 (315)
T ss_dssp HHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHHHHHHH
Confidence 89999998877 4 466666778888888776 5544333 34458888888877753
No 97
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=51.58 E-value=19 Score=29.64 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=35.3
Q ss_pred HHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc-cCChhHHHH
Q psy17474 92 EKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR-NVTGDEFMQ 136 (343)
Q Consensus 92 e~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~-dVT~~EF~l 136 (343)
.||-+|+.. +..+..+. .+|+.+-+.+.+..++. .++.+||..
T Consensus 7 ~Kck~FL~t-Li~la~~~-~pev~~~Vr~LVq~Ll~~~i~~EeFt~ 50 (105)
T 2h7b_A 7 SKLKRFLTT-LQQFGNDI-SPEIGERVRTLVLGLVNSTLTIEEFHS 50 (105)
T ss_dssp THHHHHHHH-HHHSHHHH-CHHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHH-HHHHhccC-ChHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 678889885 55666544 88999999999999986 999999965
No 98
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=50.14 E-value=1.3e+02 Score=27.87 Aligned_cols=88 Identities=20% Similarity=0.133 Sum_probs=60.7
Q ss_pred HHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHh---hccCChh-HHHHHHHHHHHHHh-hChhhhHHHH
Q psy17474 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQL---LQTNDTT-ELSVVQSSIMTLCK-NDIKGALKGM 79 (343)
Q Consensus 5 i~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QL---Lqtdd~~-E~~~V~~sL~~Llk-~Dpk~tL~~l 79 (343)
+.-..+|..++-=.||..|..-|-.+ + -..|+|..+ +.+|+.= =..++-.++-.++. .+|..++..|
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~-------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~ 144 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S-------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPII 144 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T-------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c-------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33445566666558999999977766 2 225555544 4455552 23456778889996 9999888777
Q ss_pred HHhhhcCCchHHHHHHHHhhH
Q psy17474 80 FNLIEISNGPVREKCLRFLVP 100 (343)
Q Consensus 80 f~qI~~~de~vRe~~lkFl~~ 100 (343)
-.=...++.-+|.-++.++..
T Consensus 145 ~~W~~d~n~~VRR~Ase~~rp 165 (240)
T 3l9t_A 145 DEWLKSSNLHTRRAATEGLRI 165 (240)
T ss_dssp HHHHHCSSHHHHHHHHHHTCS
T ss_pred HHHhcCCCHHHHHHHHHhhHH
Confidence 766666788999999999864
No 99
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=50.05 E-value=1.1e+02 Score=33.39 Aligned_cols=121 Identities=13% Similarity=0.171 Sum_probs=63.1
Q ss_pred HHHHHHHhhccc---cch--hHHH---HHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhh
Q psy17474 3 QAIEALFDLCED---EDV--SVRK---QAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKG 74 (343)
Q Consensus 3 ~Ai~a~lDLcED---eD~--~IR~---qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~ 74 (343)
++|..++.||++ .|. .||- -.+...+.+.+.+|++++.+...|.+-|..+.+.=..+.-+|++.+-.. .+.
T Consensus 495 ~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~-c~~ 573 (1023)
T 4hat_C 495 TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK-CKY 573 (1023)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-HTH
T ss_pred HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-HHH
Confidence 567778888873 233 3442 2356667777777888777777777777655554444455666665542 222
Q ss_pred hHHHHHHhhhcCC-chHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhH
Q psy17474 75 ALKGMFNLIEISN-GPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDE 133 (343)
Q Consensus 75 tL~~lf~qI~~~d-e~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~E 133 (343)
.+.+ ..+++ ++-=+.++.++..-.. .+.++....+.+.+-.+++.++.++
T Consensus 574 ~l~~----~~~~e~~p~~~~il~~l~~~~~-----~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 574 HFVI----QQPRESEPFIQTIIRDIQKTTA-----DLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp HHHS----CCTTCSSCHHHHHHHTHHHHHT-----TSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred Hhhc----cCCCCCchhHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 2221 00111 1111223333332111 2444555566666777777776554
No 100
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=48.97 E-value=28 Score=28.98 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=36.0
Q ss_pred HHHHHHhhHhhhhhhhh-hchHHHHHHHHHHHHHhcc-cCChhHHHH
Q psy17474 92 EKCLRFLVPKIKMLGRD-IMTKEIEEYTIDQCKKILR-NVTGDEFMQ 136 (343)
Q Consensus 92 e~~lkFl~~kl~~l~~~-ll~~E~E~~i~~~ikKvL~-dVT~~EF~l 136 (343)
.||-+||.. +..+..+ ...+|+.+-+.+.+..++. .++.+||..
T Consensus 20 kKck~FL~t-Li~las~~~~spev~~~Vr~LVq~Ll~~~i~~EeFt~ 65 (114)
T 2p6v_A 20 XXCXNFLST-LIXLASSGXQSTETAANVXELVQNLLDGXIEAEDFTS 65 (114)
T ss_dssp HHHHHHHHH-HHHHHTSSSSCHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHH-HHHHHhccccChHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 489999996 5555544 6678999999999999986 999999955
No 101
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=45.64 E-value=59 Score=28.90 Aligned_cols=92 Identities=9% Similarity=-0.001 Sum_probs=57.9
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLI 83 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI 83 (343)
+.+-+.....|++.-+|+.||-.+-..-++ ........++..++.+++.==..+|-|+|.+..+-||..+..-+=.+
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~--~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~~- 208 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYKQK--MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNN- 208 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHS-
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHC-
Confidence 345567788888888888888766443221 23334555666666666555566888888899999987666544443
Q ss_pred hcCCchHHHHHHHHhh
Q psy17474 84 EISNGPVREKCLRFLV 99 (343)
Q Consensus 84 ~~~de~vRe~~lkFl~ 99 (343)
.-+...+..+++.|.
T Consensus 209 -~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 209 -ELAPLSKREAIKHIK 223 (232)
T ss_dssp -CCCHHHHHHHTTTTH
T ss_pred -CCCHHHHHHHHHhcc
Confidence 223445555555553
No 102
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=42.27 E-value=53 Score=35.07 Aligned_cols=71 Identities=7% Similarity=0.094 Sum_probs=54.3
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCc------------chhhHhHHHHhhccCChhHHHHHHHHHHHHHh
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEY------------TPKVTDILGQLLQTNDTTELSVVQSSIMTLCK 69 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~------------v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk 69 (343)
..+++.+++...|.++.||..|..+|-.||++.+.+ ++.+.+-|.++++.-++.+...+=.|+..++.
T Consensus 539 ~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 356788888888888999999999999999986643 34444555566666667777888888888877
Q ss_pred hCh
Q psy17474 70 NDI 72 (343)
Q Consensus 70 ~Dp 72 (343)
.-|
T Consensus 619 ~~~ 621 (1049)
T 3m1i_C 619 EER 621 (1049)
T ss_dssp TCC
T ss_pred cCC
Confidence 655
No 103
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=41.38 E-value=3.8e+02 Score=29.14 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=47.3
Q ss_pred CCCchhhhhHHhhHHhhhhhhccC-CCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcCC-C-CCCCC
Q psy17474 172 PSNPEDVDRSIYCSLHCVPYLCSA-IPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPF-Y-VVHED 248 (343)
Q Consensus 172 ~sD~e~vdRli~C~~~Alp~fS~~-v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~~-~-~~~e~ 248 (343)
+.+++.+...+.|+...+.+..-+ +-+++++.+++++.++ . ++.+..-+..|.|+... + ++..+
T Consensus 206 ~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~------~-------~~~r~~A~ecL~eIv~~~~~~~~~~ 272 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT------S-------PDTRAITLKCLTEVSNLKIPQDNDL 272 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH------S-------HHHHHHHHHHHHHHHTSCCCSSCHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC------C-------HHHHHHHHHHHHHHHccccCCchHH
Confidence 356677778888888877654332 2346788888866653 1 13666778888888763 2 22102
Q ss_pred chhhHHHHHHHHHH
Q psy17474 249 TPQHITSIVDCLFV 262 (343)
Q Consensus 249 ~pqllesi~d~LL~ 262 (343)
.++.+..+|...+.
T Consensus 273 ~~~~l~~lf~~~l~ 286 (1023)
T 4hat_C 273 IKRQTVLFFQNTLQ 286 (1023)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555566666553
No 104
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=40.71 E-value=81 Score=34.43 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=63.0
Q ss_pred HHHHHHhhccc-------cchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhc-cCChhHHHHHHHHHHHHHhhChh-h
Q psy17474 4 AIEALFDLCED-------EDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ-TNDTTELSVVQSSIMTLCKNDIK-G 74 (343)
Q Consensus 4 Ai~a~lDLcED-------eD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLq-tdd~~E~~~V~~sL~~Llk~Dpk-~ 74 (343)
+++.+.-+.+. ....||++||.+|-.+.+. +-.++-+||.|++. ..++.|+++. |+..|++.+|- .
T Consensus 472 ~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~---~p~~v~~il~~i~~n~~e~~EvRia--A~~~Lm~t~P~~~ 546 (1056)
T 1lsh_A 472 SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR---DPRKVQEIVLPIFLNVAIKSELRIR--SCIVFFESKPSVA 546 (1056)
T ss_dssp GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT---CHHHHHHHHHHHHHCTTSCHHHHHH--HHHHHHHTCCCHH
T ss_pred HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh---chHHHHHHHHHHhcCCCCChHHHHH--HHHHHHHHCcCHH
Confidence 45555555432 2346889999999999864 34467789999886 7777888754 78888998884 4
Q ss_pred hHHHHHHhhhcCCchHHHHHHHHhhHhhhhhhh
Q psy17474 75 ALKGMFNLIEISNGPVREKCLRFLVPKIKMLGR 107 (343)
Q Consensus 75 tL~~lf~qI~~~de~vRe~~lkFl~~kl~~l~~ 107 (343)
.|..|...+.. |+. ..+-+|+...++.+..
T Consensus 547 ~l~~ia~~l~~-E~~--~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 547 LVSMVAVRLRR-EPN--LQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHTT-CSC--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh-Cch--HHHHHHHHHHHHHHHh
Confidence 66666666643 221 3444566665555544
No 105
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=39.46 E-value=2.5e+02 Score=26.43 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=69.5
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccC-----CcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhCh--hh
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENN-----EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDI--KG 74 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~-----e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dp--k~ 74 (343)
++++..++-|--|+|+.+|..|.-.|..+=|+-| +-+.++-|.+..++-++|-.=.--.-++|..|+..-| ++
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 5678888999999999999999888888888733 3367777777777755442222223356777776666 22
Q ss_pred hHH----HHHHhhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHH
Q psy17474 75 ALK----GMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQC 122 (343)
Q Consensus 75 tL~----~lf~qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~i 122 (343)
++. ++-+-+.++++.+|+.+..=+ ..++..-..+-+.+++...+
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~L----gklkv~~~~~~V~~~l~sLl 159 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVL----SKLQPLEDSKLVRTYINELV 159 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHH----HHCCBSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHh----CcCCcccchHHHHHHHHHHH
Confidence 222 222333345666665544332 22333333445555555444
No 106
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=38.96 E-value=76 Score=33.42 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=56.5
Q ss_pred hHHHHHHHhhccccch-hHHHHHhhhhhhhhhccCCcchhh-HhHHHHhhccCC--hhHHHHHHHHHHHHHhhChh----
Q psy17474 2 DQAIEALFDLCEDEDV-SVRKQAIKDLPSLCKENNEYTPKV-TDILGQLLQTND--TTELSVVQSSIMTLCKNDIK---- 73 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~-~IR~qAIk~Lp~lck~~~e~v~ki-aDVL~QLLqtdd--~~E~~~V~~sL~~Llk~Dpk---- 73 (343)
++.|+.+.|=.+..-. .=|+.|+.+|=.+.|+.++-+..- -..|.+.|+.|. ..=+.+|=..|..++.-|+.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~ 99 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVE 99 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccc
Confidence 3455666554444322 339999999999999877765433 467777888763 22233444444444554432
Q ss_pred ----------------------hhHHHHHHhhhcCCchHHHHHHHHhhH
Q psy17474 74 ----------------------GALKGMFNLIEISNGPVREKCLRFLVP 100 (343)
Q Consensus 74 ----------------------~tL~~lf~qI~~~de~vRe~~lkFl~~ 100 (343)
+.++.+++.+.+.+.-+|--.+++|..
T Consensus 100 ~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~ 148 (651)
T 3grl_A 100 ENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTS 148 (651)
T ss_dssp --------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 123334444444555788766666653
No 107
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=37.45 E-value=1.5e+02 Score=27.54 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=46.9
Q ss_pred hhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHH---HhhChhh--hHHHHHHhhhcCCchHHHHHHHHhh
Q psy17474 25 KDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTL---CKNDIKG--ALKGMFNLIEISNGPVREKCLRFLV 99 (343)
Q Consensus 25 k~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~L---lk~Dpk~--tL~~lf~qI~~~de~vRe~~lkFl~ 99 (343)
..+..+|+| .+-+|+ |-++|...++.|+..+=+.+... |-.|+-| .+..+|. -+++..|..+++-+.
T Consensus 26 g~i~~la~d--q~gsR~---lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle---~~~~~~~~~i~~~i~ 97 (351)
T 3gvo_A 26 GHIVEFSQD--QHGSRF---IQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE---FGSLDQKLALATRIR 97 (351)
T ss_dssp TCHHHHHTS--HHHHHH---HHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH---HCCHHHHHHHHHHHT
T ss_pred hHHHHHhcC--CcchHH---HHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHh---hCCHHHHHHHHHHHH
Confidence 347788887 466664 56677777888887776666532 2245533 2233332 356667777777777
Q ss_pred Hhhhhhhhhhc
Q psy17474 100 PKIKMLGRDIM 110 (343)
Q Consensus 100 ~kl~~l~~~ll 110 (343)
+++..+...-+
T Consensus 98 g~~~~l~~~~~ 108 (351)
T 3gvo_A 98 GHVLPLALQMY 108 (351)
T ss_dssp TCHHHHHTSTT
T ss_pred hhHHHHhhCHH
Confidence 77666555433
No 108
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=33.79 E-value=29 Score=31.59 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=17.1
Q ss_pred HHHhhccccchhHHHHHhhhhh
Q psy17474 7 ALFDLCEDEDVSVRKQAIKDLP 28 (343)
Q Consensus 7 a~lDLcEDeD~~IR~qAIk~Lp 28 (343)
.+..|..|+|..||..+.+.+|
T Consensus 126 ~L~~L~~D~d~~VR~~aA~~l~ 147 (244)
T 1lrv_A 126 QLEQMAADRDYLVRAYVVQRIP 147 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHHHSC
T ss_pred HHHHHHcCCCHHHHHHHHHhcC
Confidence 3567788889999988888654
No 109
>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, virulence, TR type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A
Probab=29.43 E-value=3.7e+02 Score=25.39 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=23.6
Q ss_pred cccCChhHHHHHHHHHhhcccccChHHH
Q psy17474 126 LRNVTGDEFMQIMDLLAWSRLSQSLAGQ 153 (343)
Q Consensus 126 L~dVT~~EF~l~m~lL~~l~~~~t~~g~ 153 (343)
-..+...||..+|+=++.++..+|...+
T Consensus 169 ~psi~~~efg~l~s~l~~Lr~L~S~d~~ 196 (294)
T 2vj4_A 169 XPSCNAYEFGFVLSXLIAIXMIRTSDVI 196 (294)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4578899999999999999988888754
No 110
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=27.24 E-value=2.3e+02 Score=23.45 Aligned_cols=38 Identities=8% Similarity=0.180 Sum_probs=31.8
Q ss_pred HHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhH
Q psy17474 19 VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTE 56 (343)
Q Consensus 19 IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E 56 (343)
+=++-|..|-.+|.++.++-+.|+.++.+.+..-.|.-
T Consensus 21 ~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~ 58 (145)
T 3d9j_A 21 ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEY 58 (145)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGG
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 55688999999999999999999999988888655543
No 111
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=26.63 E-value=62 Score=34.72 Aligned_cols=69 Identities=9% Similarity=0.146 Sum_probs=49.2
Q ss_pred HHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhh-----HhHHHHhhccCChhH---HHHHHHHHHHHH-hhChh
Q psy17474 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKV-----TDILGQLLQTNDTTE---LSVVQSSIMTLC-KNDIK 73 (343)
Q Consensus 4 Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~ki-----aDVL~QLLqtdd~~E---~~~V~~sL~~Ll-k~Dpk 73 (343)
++-.+..++..++..+|.+|++.|-.+|.+ ++....+ ...|.++|.+....+ ....-.||..++ ..||+
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 677888999999999999999999999977 6664433 467888988775432 334556777666 33443
No 112
>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10; apoptosis, inflammation, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.13 E-value=23 Score=29.09 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcccCChhHHHHHHHHHhhcc
Q psy17474 114 IEEYTIDQCKKILRNVTGDEFMQIMDLLAWSR 145 (343)
Q Consensus 114 ~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~ 145 (343)
|.+.+...+...|++.+.+||..|...|...+
T Consensus 12 ma~~~~~~Ll~~Le~L~~eElkkFK~~L~~~~ 43 (115)
T 2do9_A 12 RANSPQEALLWALNDLEENSFKTLKFHLRDVT 43 (115)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHccCc
Confidence 33445567788899999999999999998644
No 113
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=23.96 E-value=3.1e+02 Score=22.73 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred HHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHH---HHHHHHHHHHhhChhhhHH--------HHHHhhh-cCC
Q psy17474 20 RKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELS---VVQSSIMTLCKNDIKGALK--------GMFNLIE-ISN 87 (343)
Q Consensus 20 R~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~---~V~~sL~~Llk~Dpk~tL~--------~lf~qI~-~~d 87 (343)
-++-|..|-.+|.+|.++-+.|++++.+-+..-.|.-.- .|=+|++ |. .++... .+|.+.- ..+
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIv---kN-~g~~y~~~F~~~l~~~f~~~~~~~d 98 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSIC---KN-VGSPYTIYFSRNLFNLYKRTYLLVD 98 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH---HH-TCTTHHHHHHTTHHHHHHHHHHTSC
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHH---Hh-ccchHHHHHHHHHHHHHHHHHHhCC
Confidence 467788999999999999999999998888754433211 1111111 11 122233 3444432 358
Q ss_pred chHHHHHHHHhhHhhhh--hhhhhchHHHHHHHHHHHH
Q psy17474 88 GPVREKCLRFLVPKIKM--LGRDIMTKEIEEYTIDQCK 123 (343)
Q Consensus 88 e~vRe~~lkFl~~kl~~--l~~~ll~~E~E~~i~~~ik 123 (343)
+..|.++.+-+..=-.. -+..++.++.-.-|...+.
T Consensus 99 ~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 99 NTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLI 136 (144)
T ss_dssp HHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHH
Confidence 88998888866543222 2235666655544444433
No 114
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=23.82 E-value=60 Score=29.44 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=39.2
Q ss_pred hhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHhhh-cCCc
Q psy17474 10 DLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIE-ISNG 88 (343)
Q Consensus 10 DLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~qI~-~~de 88 (343)
.|+.|+|+.||.+|.+.+| .++|.+|++.+++. |+.+...-+ |.. .+..+. .++.
T Consensus 57 ~ll~d~~~~VR~~AA~~l~-------------~~~l~~L~~D~~~~----VR~~aA~~L---~~~----~L~~ll~D~d~ 112 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP-------------VEALTPLIRDSDEV----VRRAVAYRL---PRE----QLSALMFDEDR 112 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC-------------GGGGGGGTTCSSHH----HHHHHHTTS---CSG----GGGGTTTCSCH
T ss_pred HHhcCCCHHHHHHHHHhCC-------------HHHHHHHccCcCHH----HHHHHHHHC---CHH----HHHHHHcCCCH
Confidence 7889999999999999885 24577787777754 333333222 221 222222 3455
Q ss_pred hHHHHHHH
Q psy17474 89 PVREKCLR 96 (343)
Q Consensus 89 ~vRe~~lk 96 (343)
.||..+..
T Consensus 113 ~VR~~aA~ 120 (244)
T 1lrv_A 113 EVRITVAD 120 (244)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 78877766
No 115
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=23.26 E-value=7.2e+02 Score=26.70 Aligned_cols=79 Identities=11% Similarity=0.107 Sum_probs=50.9
Q ss_pred CCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhccc-cc--ChHHHHHHHHHHHH
Q psy17474 86 SNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRL-SQ--SLAGQKELMEIIKH 162 (343)
Q Consensus 86 ~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~-~~--t~~g~qeLv~li~e 162 (343)
+++.+|+++..|++.-+..++.++ ..++-..+...+.+.+..|+.-|+.+++++-. |+ -.++-++|+.-+.+
T Consensus 713 ~~~~irea~~~~~~r~i~~lg~~~-----~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~ 787 (980)
T 3ibv_A 713 FNEDIRGAVRFTSGRIINVVGPDM-----LPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLM 787 (980)
T ss_dssp CSHHHHHHHHHHHHHHTTTTHHHH-----TTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHccHhH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466799999888886666565543 33444444445567788899889988886544 43 33445777777777
Q ss_pred Hhc--cCCC
Q psy17474 163 HAE--LSKS 169 (343)
Q Consensus 163 qa~--Ld~~ 169 (343)
+.. |.++
T Consensus 788 ~if~~l~~~ 796 (980)
T 3ibv_A 788 RIFSSLSAA 796 (980)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHhcCC
Confidence 633 6654
No 116
>2kn6_A Apoptosis-associated speck-like protein containin; multidomain modular protein structure, interdomain mobility, domain, inflammation; NMR {Homo sapiens}
Probab=23.01 E-value=98 Score=27.86 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=31.8
Q ss_pred HHHHHHhcccCChhHHHHHHHHHhhcccc---c-ChH------HHHHHHHHHHHH
Q psy17474 119 IDQCKKILRNVTGDEFMQIMDLLAWSRLS---Q-SLA------GQKELMEIIKHH 163 (343)
Q Consensus 119 ~~~ikKvL~dVT~~EF~l~m~lL~~l~~~---~-t~~------g~qeLv~li~eq 163 (343)
.+.+...|++.+.+||..|...|...+.- . -+- ++..|++++.+.
T Consensus 25 ~~~Ll~~Le~L~~~ElkkFK~~L~~~~l~~g~~~Ip~~~le~ad~~dla~lLv~~ 79 (215)
T 2kn6_A 25 RDAILDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSF 79 (215)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHSCCSSCCCCCCHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHhhccccccCCCCChhhhhcCCHHHHHHHHHHH
Confidence 46677889999999999999999864332 2 222 256677777665
No 117
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=22.84 E-value=5.9e+02 Score=29.01 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=26.5
Q ss_pred HHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccC
Q psy17474 6 EALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTN 52 (343)
Q Consensus 6 ~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtd 52 (343)
+.++++.+=--..+.+..|..||.++.|. +| +.++..|.+||+.+
T Consensus 160 ~ki~~vl~vap~~lQ~diI~sLPeIl~ds-~H-~~v~~~L~~lL~~~ 204 (1323)
T 3s4w_B 160 AQMMQLISVAPVNLQHDFITSLPEILGDS-QH-ANVGKELGELLVQN 204 (1323)
T ss_dssp HHHHHHHHHSCTTTHHHHHHTHHHHSCGG-GH-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHhcch-hh-HHHHHHHHHHHhcC
Confidence 34444433333357778888888888763 33 35666666666653
No 118
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.46 E-value=1.6e+02 Score=22.64 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcc-cCChhHHHHHHHHHhhcccccChHHHHHHHHHHH
Q psy17474 86 SNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILR-NVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIK 161 (343)
Q Consensus 86 ~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~-dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~ 161 (343)
+-+.+++++.+|+......+.. ++|--.+=.+.+..+|. | ...|...|..+++|++. .+..|++-+.-+.
T Consensus 24 ~~~~L~~~a~~fi~~nF~~v~~---~~eFl~L~~~~L~~lL~sd-v~~E~~vf~av~~Wv~~--d~~~R~~~~~~Ll 94 (105)
T 2eqx_A 24 SDPELYTAAKHCAKTHLAQLQN---TEEFLHLPHRLLTDIISDG-VPCSQNPTEAIEAWINF--NKEEREAFAESLR 94 (105)
T ss_dssp TCHHHHHHHHHHHHHTCHHHHT---SHHHHHSCHHHHHHHHHTC-EETTSCHHHHHHHHHHT--THHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHh---cccHhhCCHHHHHHHHcCC-CCCHHHHHHHHHHHHHc--CHHHHHHHHHHHH
Confidence 5678999999999987665532 22333333455555564 5 45577778888888754 2344544333333
No 119
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=22.37 E-value=5.3e+02 Score=24.84 Aligned_cols=78 Identities=10% Similarity=0.158 Sum_probs=45.5
Q ss_pred hhhhhhhhccCCcchhhHhHHHHhhccC-ChhHHHHHHHHHHH------HHhhChhh--hHHHHHHhhhcC-Cc---hHH
Q psy17474 25 KDLPSLCKENNEYTPKVTDILGQLLQTN-DTTELSVVQSSIMT------LCKNDIKG--ALKGMFNLIEIS-NG---PVR 91 (343)
Q Consensus 25 k~Lp~lck~~~e~v~kiaDVL~QLLqtd-d~~E~~~V~~sL~~------Llk~Dpk~--tL~~lf~qI~~~-de---~vR 91 (343)
..+..+|+| .+-+| +|-+.|... ++.|+..+=+.+.. -|-.||=| .+.-+|...-.. .+ ..|
T Consensus 29 G~i~~la~D--q~GsR---~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~ 103 (412)
T 3k62_A 29 GDLMKFAVD--KTGCQ---FLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQ 103 (412)
T ss_dssp TCHHHHHTS--HHHHH---HHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHH
T ss_pred CCcHHHhcC--ChhHH---HHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHH
Confidence 456788887 45555 567778776 77888777666532 24456644 334444443221 10 456
Q ss_pred HHHHHHhhHhhhhhhh
Q psy17474 92 EKCLRFLVPKIKMLGR 107 (343)
Q Consensus 92 e~~lkFl~~kl~~l~~ 107 (343)
..+++.+.+++..+..
T Consensus 104 ~~i~~~l~g~v~~L~~ 119 (412)
T 3k62_A 104 EKLKNFISSQMTDMCL 119 (412)
T ss_dssp HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 6677777766655544
No 120
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=22.31 E-value=62 Score=21.49 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=21.5
Q ss_pred ChhhhHHHHHHhhhc-CCchHHHHHHHHhh
Q psy17474 71 DIKGALKGMFNLIEI-SNGPVREKCLRFLV 99 (343)
Q Consensus 71 Dpk~tL~~lf~qI~~-~de~vRe~~lkFl~ 99 (343)
||.+.|..||.+|=. ||+.+|.-+.|...
T Consensus 3 dp~~~l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 3 GSSEGLMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp --CCSHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 688889999999965 78888877776543
No 121
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=22.20 E-value=89 Score=25.11 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=36.7
Q ss_pred hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCCh
Q psy17474 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDT 54 (343)
Q Consensus 2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~ 54 (343)
+++++..|+=.-. -++.|..+-.+|-++.++-+.|++++.+-+....+
T Consensus 6 ~~~l~~~L~~L~~-----s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~ 53 (135)
T 4fu3_A 6 ESALEKKLSELSN-----SQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKS 53 (135)
T ss_dssp HHHHHHHHHHCCS-----STTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556666654432 24678899999999999999999999998886555
No 122
>3qf2_A Nacht, LRR and PYD domains-containing protein 3; six helix bundle, apoptosis; 1.70A {Homo sapiens}
Probab=21.39 E-value=2e+02 Score=23.12 Aligned_cols=45 Identities=9% Similarity=0.044 Sum_probs=30.7
Q ss_pred HHHHHhcccCChhHHHHHHHHHhhcccc---c-ChHH------HHHHHHHHHHHh
Q psy17474 120 DQCKKILRNVTGDEFMQIMDLLAWSRLS---Q-SLAG------QKELMEIIKHHA 164 (343)
Q Consensus 120 ~~ikKvL~dVT~~EF~l~m~lL~~l~~~---~-t~~g------~qeLv~li~eqa 164 (343)
..+...|++.+.+||..|...|.....- . -+.| +..|++++..+.
T Consensus 6 ~~Ll~~LeeL~~eElkkFK~~L~~~~~~~g~~~Ip~~~le~ad~~dLA~lLv~~y 60 (110)
T 3qf2_A 6 CKLARYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFN 60 (110)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHTCCSSSSCCCCCHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHcccccccCCCCCCHHHHhcCCHHHHHHHHHHHc
Confidence 4567889999999999999999754331 2 2222 456676666553
No 123
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=20.30 E-value=2.7e+02 Score=26.04 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=24.8
Q ss_pred HHHHHHHHH--------HHHhhChhhhHHHHHHhhhcCCc
Q psy17474 57 LSVVQSSIM--------TLCKNDIKGALKGMFNLIEISNG 88 (343)
Q Consensus 57 ~~~V~~sL~--------~Llk~Dpk~tL~~lf~qI~~~de 88 (343)
..+||++|+ .-++.||.+....+|+.|..+++
T Consensus 94 ~qvaHQ~llLQYIlELak~L~~dpr~~v~~FF~ki~~~~~ 133 (265)
T 1us7_B 94 EQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADR 133 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCGGGTHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHhccCh
Confidence 357888876 23566899999999999986655
Done!