RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17474
(343 letters)
>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5). This
family consists of apoptosis inhibitory protein 5 (API5)
sequences from several organisms. Apoptosis or
programmed cell death is a physiological form of cell
death that occurs in embryonic development and organ
formation. It is characterized by biochemical and
morphological changes such as DNA fragmentation and cell
volume shrinkage. API5 is an anti apoptosis gene located
in human chromosome 11, whose expression prevents the
programmed cell death that occurs upon the deprivation
of growth factors.
Length = 543
Score = 197 bits (503), Expect = 9e-59
Identities = 99/280 (35%), Positives = 152/280 (54%), Gaps = 17/280 (6%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
+A +A FDLC+D+D VR QAI+ LP CK+ + T K+ D+L QLL T + E V
Sbjct: 58 TEAFDAQFDLCDDDDTGVRVQAIRGLPLFCKDTPDATSKIGDVLVQLLNTEEPVERDAVH 117
Query: 62 SSIMTLCKNDIKGALKGMFNLIEIS---NGPVREKCLRFLVPKIKMLGRDIMT--KEIEE 116
++M+L + D K ++ +F I + + +REK L+F+ K+ L +++ KE+E
Sbjct: 118 KALMSLIRQDTKASITALFQHISATLTTDEQIREKVLKFIRDKVLPLKGELLKPQKEMER 177
Query: 117 YTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLA---GQKELMEIIKHHAELSKSFDPS 173
+ D KK L++VTGDEF MD L + A +EL+EII+ A+L+ +F
Sbjct: 178 HITDLIKKSLQDVTGDEFHMFMDFLGSLSIFGGKAPIERMQELVEIIEGQADLNNTFIAV 237
Query: 174 NPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEAL 233
+ E V+R I C+ PY PS+ F++YL +++LP D +PE + +L L
Sbjct: 238 DDEVVERFIQCASAAAPYFSRGAPSSAFLAYLNKKILPTFDMLPEER--------KLRLL 289
Query: 234 KLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSL 273
K LAE+SP Y +D Q + SIV+ L PS
Sbjct: 290 KALAEMSP-YTTAQDARQRLPSIVNLLLEYMPLGDTPPSF 328
Score = 61.2 bits (148), Expect = 2e-10
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 262 VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSLS 321
VR QAI+ LP CK+ + T K+ D+L QLL T + E V ++M+L + D K +
Sbjct: 75 VRVQAIRGLPLFCKDTPDATSKIGDVLVQLLNTEEPVERDAVHKALMSLIRQDTKASITA 134
Query: 322 L 322
L
Sbjct: 135 L 135
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 34.2 bits (79), Expect = 0.011
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
+A+ AL +L +D D VR+ A + L L P+ L +LLQ D + V
Sbjct: 30 PEALPALLELLKDPDPEVRRAAAEALGKL------GDPEALPALLELLQ--DDDDAVVRA 81
Query: 62 SSIMTL 67
++ L
Sbjct: 82 AAASAL 87
Score = 28.8 bits (65), Expect = 1.1
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 5 IEALFD-LCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSS 63
+EAL + L D D VR A + L L P+ L +LL+ D V +++
Sbjct: 1 LEALLEALLSDPDPEVRAAAARALGELG------DPEALPALLELLKDPDP---EVRRAA 51
Query: 64 IMTL 67
L
Sbjct: 52 AEAL 55
>gnl|CDD|221034 pfam11224, DUF3023, Protein of unknown function (DUF3023). This
bacterial family of proteins with unknown function
appear to be restricted to Alphaproteobacteria.
Length = 130
Score = 29.6 bits (67), Expect = 1.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 159 IIKHHAELSKSFDPSNPEDVDRSIYCSLHCV 189
I+K++ EL + F SN E + +L+C+
Sbjct: 45 IVKNNPELRELFGLSNSEFETPYLKANLYCL 75
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and
conversion].
Length = 335
Score = 29.5 bits (66), Expect = 2.3
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDT 54
AI L +L EDED VR+ A L L EN E D+L + L
Sbjct: 181 AIPLLIELLEDEDADVRRAAASALGQLGSENVE----AADLLVKALSDESL 227
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 27.0 bits (60), Expect = 2.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDL 27
+ + AL L +D+D VR+ A L
Sbjct: 27 PELLPALLPLLKDDDDEVREAAAWAL 52
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.0 bits (68), Expect = 2.4
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 201 FVSYLCEQVLPKLDQIPETKDE----AGGLDNQLEALKLLAE 238
YL EQV KLD++ E +D+ G ++N+LE L+ L E
Sbjct: 658 AEEYL-EQVEEKLDELREERDDLQAEIGAVENELEELEELRE 698
>gnl|CDD|217823 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is
required for propionate catabolism. It catalyzes the
third step of the 2-methylcitric acid cycle.
Length = 445
Score = 29.6 bits (67), Expect = 2.5
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 145 RLSQSLAGQKELMEIIKH---HAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIP 197
R A + E +EI ++K P+NPE D H +PY+ A+
Sbjct: 282 REEGDRADEIESIEIETFEVAIRIINKRGPPANPETAD-------HSLPYII-AVA 329
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related
to armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 25.2 bits (56), Expect = 5.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 5 IEALFDLCEDEDVSVRKQAIKDLPSLCK 32
+ L +L D D VR+ A + L +L +
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALAE 29
>gnl|CDD|226085 COG3555, COG3555, Aspartyl/asparaginyl beta-hydroxylase and related
dioxygenases [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 28.6 bits (64), Expect = 5.2
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 181 SIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLL 236
++ SL+ Y S +PS P+ + P+L I D + EAL LL
Sbjct: 32 ALRASLNKFMYAASLLPSGPYFDDV--DTFPELATI-----RTNWQDIRDEALALL 80
>gnl|CDD|166199 PLN02558, PLN02558, CDP-diacylglycerol-glycerol-3-phosphate/
3-phosphatidyltransferase.
Length = 203
Score = 27.7 bits (61), Expect = 8.2
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 97 FLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLA 151
F VP I ++GR+I + E+ Q K+L E + + +L W +Q ++
Sbjct: 105 FTVPAIAIIGREITMSAVREWAASQNGKLL------EAVAVNNLGKWKTATQMIS 153
>gnl|CDD|99914 cd05531, POLBc_B2, DNA polymerase type-B B2 subfamily catalytic
domain. Archaeal proteins that are involved in DNA
replication are similar to those from eukaryotes. Some
archaeal members also possess multiple family B DNA
polymerases (B1, B2 and B3). So far there is no specific
function(s) has been assigned for different members of
the archaea type B DNA polymerases. Phylogenetic
analyses of eubacterial, archaeal, and eukaryotic family
B DNA polymerases are support independent gene
duplications during the evolution of archaeal and
eukaryotic family B DNA polymerases.
Length = 352
Score = 27.7 bits (62), Expect = 9.1
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 236 LAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKE 276
+AE F V+H IVD L+++ + D+ L +E
Sbjct: 141 IAEEMGFRVLH--------GIVDSLWIQGR--GDIEELARE 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,971,542
Number of extensions: 1599856
Number of successful extensions: 1443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1438
Number of HSP's successfully gapped: 28
Length of query: 343
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 245
Effective length of database: 6,590,910
Effective search space: 1614772950
Effective search space used: 1614772950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)