RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17474
(343 letters)
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine
acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Length = 507
Score = 222 bits (567), Expect = 9e-69
Identities = 109/259 (42%), Positives = 167/259 (64%), Gaps = 5/259 (1%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
D AI A DLCEDEDVS+R+QAIK+LP E P+V DIL QLLQT+D+ E ++V
Sbjct: 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFAT--GENLPRVADILTQLLQTDDSAEFNLVN 121
Query: 62 SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121
++++++ K D KG L G+F+ I VRE+ ++FL K+K L +++TKE+EE + +
Sbjct: 122 NALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181
Query: 122 CKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
KK+L +VTG+EF+ M +L+ + Q+++G+++L+E++ A+L ++F+PS+P+ VDR
Sbjct: 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRL 241
Query: 182 IYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP 241
+ C+ VP + ST FV+Y CEQVLP L + + LD QLE LKLLAE+S
Sbjct: 242 LQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEG---LDIQLEVLKLLAEMSS 298
Query: 242 FYVVHEDTPQHITSIVDCL 260
F E ++ + D L
Sbjct: 299 FCGDMEKLETNLRKLFDKL 317
Score = 55.7 bits (133), Expect = 8e-09
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 262 VRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKV 317
+R+QAIK+LP E P+V DIL QLLQT+D+ E ++V ++++++ K D K
Sbjct: 81 IRRQAIKELPQFAT--GENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 1e-09
Identities = 62/374 (16%), Positives = 114/374 (30%), Gaps = 157/374 (41%)
Query: 76 LKGMF-----NLIEISNGPVREKCLRFLVPKIK---MLGRDIMT-----KEIEEYTIDQC 122
L G F +L+E S ++ L + + + + G DI + + T+ +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 123 KKILRN------VTGDEFMQIMDLLAWSRLSQSLA-----------GQ-------KELME 158
K++++N + F + + S L +++ GQ +EL +
Sbjct: 120 KELIKNYITARIMAKRPFDKKSN----SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 159 I-----------IKHHAEL---------------SKSFDP----SNPEDVDRSIYCSLHC 188
+ IK AE ++ + NP +
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT--------PD 227
Query: 189 VPYLCSAIPSTP------FVSYL--CEQVLPKLDQIP-ETKDEAGGL------------- 226
YL S S P Y+ + L P E + G
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKL----LGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 227 ----------DNQLEALKLLAELSPFYV---VHEDTPQHITSIVDCLFVRKQAIKDLPSL 273
+ +A+ +L F++ +E P + ++D
Sbjct: 284 AETDSWESFFVSVRKAITVL-----FFIGVRCYEAYPN--------TSLPPSILED---- 326
Query: 274 CKENNEYTP----KVTDI-LGQLL----QTNDTTELSVVQS-SIMTLCKN--DIKVLS-- 319
ENNE P ++++ Q+ +TN + L + I +L N V+S
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTN--SHLPAGKQVEI-SL-VNGAKNLVVSGP 382
Query: 320 -LSL-GLNQCYHYR 331
SL GLN R
Sbjct: 383 PQSLYGLNL--TLR 394
Score = 49.3 bits (117), Expect = 1e-06
Identities = 65/428 (15%), Positives = 123/428 (28%), Gaps = 172/428 (40%)
Query: 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTT--------- 55
+ L + + +L + + + +IL + L+ T
Sbjct: 184 VGDLIKFSA--------ETLSELIRTTLDAEKVFTQGLNIL-EWLENPSNTPDKDYLLSI 234
Query: 56 ELS-----VVQ-SSIMTLCKN------DIKGALKGMFNLIE-------ISNGPVRE---- 92
+S V+Q + + K +++ LKG + I+ E
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 93 ---KCLRFL----------VPKIK-------------------MLG-RDIMTKEIEEYTI 119
K + L P ML ++ +++++Y +
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY-V 353
Query: 120 DQC-------KKI---LRN------VTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHH 163
++ K++ L N V+G L L+ +L K + +
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGP----PQSLYG---LNLTLRKAKAPSGLDQSR 406
Query: 164 AELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIP-STPFVSYLCEQVLPKLDQ------- 215
S+ R + S +L P ++PF S+L +++
Sbjct: 407 IPFSE-----------RKLKFSNR---FL----PVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 216 --------IP--ETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQ 265
IP +T D G D L LS + IVDC+ R
Sbjct: 449 SFNAKDIQIPVYDTFD---GSD--------LRVLSG-----SISE----RIVDCII-RLP 487
Query: 266 AIKDLPSLCKENNEYT------PKVTDILGQLLQTN-DTTELSVVQSSIMTLCKNDIKVL 318
+ + + T P LG L N D T + V+ + + + +D
Sbjct: 488 V--KWETTTQ--FKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD---- 539
Query: 319 SLSLGLNQ 326
G Q
Sbjct: 540 --DYGFKQ 545
Score = 43.9 bits (103), Expect = 7e-05
Identities = 23/155 (14%), Positives = 42/155 (27%), Gaps = 45/155 (29%)
Query: 181 SIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPK--LDQIPETKDEAGGLDNQLEALKLLAE 238
S+ L +P+ F L + +PE + D +L+ +
Sbjct: 15 SLEHVLL--------VPTASFFIA---SQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 239 LSPF--YVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTND 296
F YV P + L + + N Y L+ ND
Sbjct: 64 ---FLGYVSSLVEPSKVGQFDQVL---NLCLTEF------ENCY-----------LEGND 100
Query: 297 TTELSVVQSSIMTLCKNDIKVLSLSLGLNQCYHYR 331
+ + L + + L + L + Y
Sbjct: 101 ------IHALAAKLLQENDTTLVKTKELIKNY-IT 128
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 45.0 bits (106), Expect = 2e-05
Identities = 46/323 (14%), Positives = 101/323 (31%), Gaps = 37/323 (11%)
Query: 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKE--NNEYTPKVTDILGQLLQTNDTTELSVVQS 62
I L D +EDV +R +IK L ++ ++ L + D L++ +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQ 71
Query: 63 --SIMTLCKND--IKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYT 118
+ TL + L + +L + VR+K V ++ + + ++E +
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKA----VESLRAISHEHSPSDLEAHF 127
Query: 119 IDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDV 178
+ K++ L + S A + EL + + L P V
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR---NLCSDDTP----MV 180
Query: 179 DRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAE 238
R + + + + + +++P + DE +L A++
Sbjct: 181 RR---AAASKLGEFAKVLE----LDNVKSEIIPMFSNL--ASDEQD--SVRLLAVEACVN 229
Query: 239 LSPFYVVHEDTPQHITSIVDCLF------VRKQAIKDLPSLCK--ENNEYTPKVTDILGQ 290
++ + ED + + VR L K +
Sbjct: 230 IAQL-LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 288
Query: 291 LLQTNDTTELSVVQSSIMTLCKN 313
L++ + + + C+N
Sbjct: 289 LMKDCEAEVRAAASHKVKEFCEN 311
Score = 41.5 bits (97), Expect = 3e-04
Identities = 37/289 (12%), Positives = 83/289 (28%), Gaps = 41/289 (14%)
Query: 1 MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKE--NNEYTPKVTDILGQLLQTNDTTELS 58
M Q + + +L D + V+ + L + + + L+
Sbjct: 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRL 381
Query: 59 VVQSSIMTLCKN-----DIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKE 113
+ S++ + + + L + L E + VR + ++ LG + ++
Sbjct: 382 NIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK 441
Query: 114 IEEYTIDQCKKILRNVTGDEFMQIMD--LLAWSRLSQSLAGQKELMEIIKHHAELSKSFD 171
+ + D I + +L + + II +S
Sbjct: 442 LNS--------LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGD-- 491
Query: 172 PSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKL-DQIPETKDEAGGLDNQL 230
P + R C+ L ++ VL D + +
Sbjct: 492 ---PNYLHRMTTL--FCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV---------RF 537
Query: 231 EALKLLAELSPFYVVHEDTPQHITSIVDCLF------VRKQAIKDLPSL 273
K L ++ P + + + I++ L V+ A + L L
Sbjct: 538 NVAKSLQKIGP-ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
Score = 40.8 bits (95), Expect = 5e-04
Identities = 43/289 (14%), Positives = 90/289 (31%), Gaps = 31/289 (10%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCK--ENNEYTPKVTDILGQLLQTNDTTELSV 59
+ I +L DE SVR A++ ++ + + V L Q + +
Sbjct: 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYM 261
Query: 60 VQSSIMTLCKN-----DIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEI 114
V L K + NL++ VR + + L D I
Sbjct: 262 VADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321
Query: 115 EEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSN 174
+ K+++ + + ++ LS L + ++ K P
Sbjct: 322 MSQILPCIKELVSDANQHVKSALASVI--MGLSPILGKDNTIEHLLPLFLAQLKDECP-- 377
Query: 175 PEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALK 234
+V +I + + + I L LP + ++ E +L ++
Sbjct: 378 --EVRLNI---ISNLDCVNEVIGIRQLSQSL----LPAIVELAEDAKW----RVRLAIIE 424
Query: 235 LLAELSPFYVVHEDTPQHITSIVDCLF------VRKQAIKDLPSLCKEN 277
+ L+ V E + + S+ +R+ A +L L ++
Sbjct: 425 YMPLLAGQLGV-EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Score = 40.4 bits (94), Expect = 6e-04
Identities = 45/322 (13%), Positives = 101/322 (31%), Gaps = 26/322 (8%)
Query: 1 MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCK--ENNEYTPKVTDILGQLLQ-TNDTTEL 57
+ + +LC D+ VR+ A L K E + ++ + L D+ L
Sbjct: 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRL 221
Query: 58 SVVQSSIMTLCKNDIKG----ALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKE 113
V++ + + + + E + VR K +G +I +
Sbjct: 222 LAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTD 281
Query: 114 IEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPS 173
+ + K V ++ + LS + +I+ EL D +
Sbjct: 282 LVPAFQNLMKDCEAEVRAAASHKVKEFC--ENLSADCRENVIMSQILPCIKELVS--DAN 337
Query: 174 NPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKL-DQIPETKDEAGGLDNQLEA 232
+ V ++ + L + + +L L +L D+ PE + +
Sbjct: 338 --QHVKSALASVIM---GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI------ISN 386
Query: 233 LKLLAELSPFYVVHEDTPQHITSIVDCL--FVRKQAIKDLPSLCKENNEYTPKVTDILGQ 290
L + E+ + + I + + VR I+ +P L + +
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD-EKLNSL 445
Query: 291 LLQTNDTTELSVVQSSIMTLCK 312
+ ++ +++ L K
Sbjct: 446 CMAWLVDHVYAIREAATSNLKK 467
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 40.3 bits (94), Expect = 7e-04
Identities = 43/321 (13%), Positives = 98/321 (30%), Gaps = 58/321 (18%)
Query: 5 IEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSI 64
+ L + + +RK+A + ++ E LL + L +
Sbjct: 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLL 203
Query: 65 MTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKK 124
+C+ + + + +++L IM+ E+ +
Sbjct: 204 TEMCERSPD----------------MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGIS- 246
Query: 125 ILRNVTGDEFMQ--IMDLLAW-SRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
D F+Q I+ LL R + + + +I+ A +++ +
Sbjct: 247 -------DPFLQVRILRLLRILGRNDDDSS--EAMNDILAQVATNTETSKNVGNAIL--- 294
Query: 182 IYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKL-DQIPETKDEAGGLDNQLEALKLLAELS 240
V + + + L + + A L +L +
Sbjct: 295 ----YETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVA------LTSLLKTVQTD 344
Query: 241 PFYVVHEDTPQHITSIVDCL-----FVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTN 295
V +H ++IVDCL ++++A++ +L NN + ++ +LL
Sbjct: 345 HNAVQ-----RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-----IRGMMKELLYFL 394
Query: 296 DTTELSVVQSSIMTLCKNDIK 316
D+ E + K
Sbjct: 395 DSCEPEFKADCASGIFLAAEK 415
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 38.9 bits (90), Expect = 0.001
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
+ ++ L +L +D+ +V K AI + + K + + L LL + + + Q
Sbjct: 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLL--KKSEAIPLTQ 88
Query: 62 SSIMTLCK------NDIKGALKGMFNLIEISNGPVREKCLRFL 98
+ +K + +F I + + L
Sbjct: 89 EIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYAL 131
Score = 34.7 bits (79), Expect = 0.029
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQS 62
+ + +L D D VR A++ L L N K+ ++ + L+ + T V ++
Sbjct: 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLN----DKLRKVVIKRLEELNDTSSLVNKT 236
Query: 63 SIMTLCK 69
+ +
Sbjct: 237 VKEGISR 243
Score = 27.4 bits (60), Expect = 6.1
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 230 LEALKLLAELSPFYVVHEDTPQHITSIVDCL-----FVRKQAIKDLPSLCKENNEYTPKV 284
L ++ + E S YV + I++ L VR A++ L L N K+
Sbjct: 165 LNFIEAMGENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLN----DKL 215
Query: 285 TDILGQLLQTNDTTELSVVQSSIMTLCK 312
++ + L+ + T V ++ + +
Sbjct: 216 RKVVIKRLEELNDTSSLVNKTVKEGISR 243
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 36.9 bits (86), Expect = 0.002
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
D+A E L + +ED +R A + + + + L +LL+ + V
Sbjct: 41 DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ------DERAVEPLIKLLEDDSG---FVRS 91
Query: 62 SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFL 98
+ +L + + M L E G R+ + +L
Sbjct: 92 GAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYL 128
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 37.7 bits (88), Expect = 0.002
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQS 62
+ +E +D+ VR+ A L + + + L + L+ D V ++
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAAYALGKI------GDERAVEPLIKALKDEDA---WVRRA 69
Query: 63 SIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFL 98
+ L + + A++ + ++ +G VR+ L
Sbjct: 70 AADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL 105
Score = 37.0 bits (86), Expect = 0.005
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTND 53
+A+E L +DED VR+ A L + +V + +L +T
Sbjct: 143 RAVEPLIKALKDEDGWVRQSAADALGEIG------GERVRAAMEKLAETGT 187
Score = 34.6 bits (80), Expect = 0.027
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
++A+E L +DED VR+ A L + + + L + L+ D V Q
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADALGQIG------DERAVEPLIKALKDED---GWVRQ 99
Query: 62 SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFL 98
S+ + L + + A++ + ++ + VR L
Sbjct: 100 SAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFAL 136
Score = 32.0 bits (73), Expect = 0.22
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEY 37
++ A+ L E RK A+ L + N+ +
Sbjct: 173 ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHHH 208
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 37.7 bits (87), Expect = 0.004
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 14/110 (12%)
Query: 3 QAIEALFDLCE-DEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTE 56
A+ L L + D +VR +A+ + L +E + +L + +Q
Sbjct: 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183
Query: 57 LSVVQSSIMTLCKNDI--------KGALKGMFNLIEISNGPVREKCLRFL 98
+ L G ++ + L+ + P E L L
Sbjct: 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGAL 233
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 36.5 bits (85), Expect = 0.006
Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
+ +E +D+ VR+ A L + + + L + L+ D V +
Sbjct: 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKI------GDERAVEPLIKALKDEDA---WVRR 63
Query: 62 SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFL 98
++ L + + A++ + ++ +G VR+ L
Sbjct: 64 AAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL 100
Score = 36.1 bits (84), Expect = 0.007
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTND 53
++A+E L +DED VR+ A L + +V + +L +T
Sbjct: 137 ERAVEPLIKALKDEDGWVRQSAADALGEIG------GERVRAAMEKLAETGT 182
Score = 34.6 bits (80), Expect = 0.022
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
++A+E L +DED VR+ A L + + + L + L+ D V Q
Sbjct: 44 ERAVEPLIKALKDEDAWVRRAAADALGQIG------DERAVEPLIKALKDED---GWVRQ 94
Query: 62 SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFL 98
S+ + L + + A++ + ++ + VR L
Sbjct: 95 SAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFAL 131
Score = 30.4 bits (69), Expect = 0.55
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDL 27
++ A+ L E RK A+ L
Sbjct: 168 ERVRAAMEKLAETGTGFARKVAVNYL 193
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 37.2 bits (86), Expect = 0.007
Identities = 49/314 (15%), Positives = 110/314 (35%), Gaps = 49/314 (15%)
Query: 14 DEDVSVRKQAIKDLPSLCKENNEYTPK--VTDILGQLLQTNDTTELSVVQSSIMTLCKND 71
D SV++ A L L + + + P T + LL L VV ++ +
Sbjct: 159 DTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQH---LGVVTAATSLIT--- 212
Query: 72 IKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTG 131
L + + + + V ++ + T ++YT
Sbjct: 213 ---------TLAQKNPEEFK-TSVSLAVSRLSRIVTSASTDL-QDYTY--------YFVP 253
Query: 132 DEFMQ--IMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCV 189
++ ++ LL + A + L E ++ + P+ + + V
Sbjct: 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA----QEPPKSKKVQHSNAKNAV 309
Query: 190 PYLC-SAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHED 248
+ S I L + +L Q + ++ + + AL+ + L+ HE
Sbjct: 310 LFEAISLIIHHDSEPNLLVRACNQLGQFLQHRET----NLRYLALESMCTLASSEFSHEA 365
Query: 249 TPQHITSIVDCL------FVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSV 302
HI ++++ L VR++A+ L ++C +N I+ ++L +T + S+
Sbjct: 366 VKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN-----AQQIVAEMLSYLETADYSI 420
Query: 303 VQSSIMTLCKNDIK 316
+ ++ + K
Sbjct: 421 REEIVLKVAILAEK 434
Score = 30.7 bits (69), Expect = 0.82
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 8 LFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTL 67
+ L + DVSVR++A+ L ++C +N I+ ++L +T + S+ + ++ +
Sbjct: 374 INALKTERDVSVRQRAVDLLYAMCDRSN-----AQQIVAEMLSYLETADYSIREEIVLKV 428
Query: 68 CKNDIKGA------LKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTK--EIEEYTI 119
K A + + NLI I+ V E+ ++ I+ +++ Y
Sbjct: 429 AILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVI--------QIVINRDDVQGYAA 480
Query: 120 DQCKKILRN 128
+ L+
Sbjct: 481 KTVFEALQA 489
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.007
Identities = 49/388 (12%), Positives = 112/388 (28%), Gaps = 97/388 (25%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
LF + + ++ ++++ Y ++ I + Q + T + + Q
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEV-----LRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 62 SSIMTLCKNDIKGALKGMFNLIEISNGPVRE--KCLRFLVPKIK-----MLGRDIMTKEI 114
+ ND + K + ++ P + + L L P +LG
Sbjct: 116 RDRL---YNDNQVFAKYNVSRLQ----PYLKLRQALLELRPAKNVLIDGVLG-------- 160
Query: 115 EEYTIDQCKK------ILRNVTGDEFMQIMDL-LAWSRLSQSLAGQKELMEIIKHHAELS 167
K + + + MD + W L +++ +L
Sbjct: 161 -------SGKTWVALDVCLS---YKVQCKMDFKIFWLNLKN----CNSPETVLEMLQKLL 206
Query: 168 KSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPK----LDQIPETKDEA 223
DP+ D S + +I L + L + +
Sbjct: 207 YQIDPNWTSRSDHSSN-----IKLRIHSI-QAELRRLLKSKPYENCLLVLLNV-QNAKAW 259
Query: 224 GGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDC-----------LFVR--KQAIKDL 270
+ + L + T HI S+ L ++ +DL
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 271 PS-LCKENNEYTPKVTDILGQLLQ----TNDTTE-------LSVVQSSIMTLCKNDIKVL 318
P + N P+ I+ + ++ T D + ++++SS+ L + + +
Sbjct: 319 PREVLTTN----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 319 SLSLGLNQCYHYRLDL---TSAITIAWT 343
L + + T +++ W
Sbjct: 375 FDRLSV-----FPPSAHIPTILLSLIWF 397
Score = 37.5 bits (86), Expect = 0.007
Identities = 35/169 (20%), Positives = 54/169 (31%), Gaps = 50/169 (29%)
Query: 108 DIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELS 167
D T E + Q K IL V D F+ D + +S+ ++E+ II +S
Sbjct: 8 DFETGEHQY----QYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 168 KS---FD-----PSNP-----EDVDRSIYCSLHCVPYLCSAI------PSTPFVSYLCE- 207
+ F E+V R Y +L S I PS Y+ +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINY------KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 208 -------QVLPKLDQIPETKDEAGGLDNQLEALK-LLAELSP--FYVVH 246
QV K + + L+ L EL P ++
Sbjct: 117 DRLYNDNQVFAKY-NVSRLQ--------PYLKLRQALLELRPAKNVLID 156
Score = 30.2 bits (67), Expect = 1.4
Identities = 60/347 (17%), Positives = 101/347 (29%), Gaps = 98/347 (28%)
Query: 33 ENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFN---LIEISNGP 89
E E+ + DIL + + CK D++ K + + + I
Sbjct: 10 ETGEHQYQYKDIL-SVFEDAFVDNFD---------CK-DVQDMPKSILSKEEIDHIIMSK 58
Query: 90 VREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGD-EFMQIMDLLAWSRLS- 147
L + +++ K +EE +LR + +F+ S +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEE--------VLRI---NYKFL-------MSPIKT 100
Query: 148 QSLAGQKELMEIIKHHAELSKSFDPSNPEDVDR-SIYCSLHCVPYLCSAIPSTPFV---- 202
+ I+ L +V R Y L L P+ V
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPA-KNVLIDG 157
Query: 203 ------SYLCEQVLPKLDQIPETKDEAG------GLDNQLEAL-----KLLAELSPFYVV 245
+++ V L + K + N E + KLL ++ P +
Sbjct: 158 VLGSGKTWVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 246 HED----TPQHITSI-------------VDCLFV-----RKQAIKDLPSLCK-----ENN 278
D I SI +CL V +A CK
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 279 EYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIK-VLSLSLGL 324
+ VTD L TT +S+ S MTL +++K +L L
Sbjct: 276 Q----VTDFLS----AATTTHISLDHHS-MTLTPDEVKSLLLKYLDC 313
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 35.5 bits (82), Expect = 0.016
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 2 DQAIEALFD-LCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVV 60
D L + D+ VR AI+ CK+N Y+PK+ + T +V
Sbjct: 89 DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKST---NVR 145
Query: 61 QSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFL 98
+++ + + K + + NL++ NG VR +
Sbjct: 146 RATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAI 183
Score = 32.1 bits (73), Expect = 0.22
Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 6/52 (11%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTND 53
+ LF L +D + R + + L + + +
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARVLQLR------GGQDAVRLAIEFCSDKN 67
Score = 31.3 bits (71), Expect = 0.37
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQT 51
A+ + C D++ R L + K + V +IL +
Sbjct: 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQI-KICKKCEDNVFNILNNMALN 101
Score = 31.3 bits (71), Expect = 0.42
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
+ ++ +D++ VR +AI L +V +L L+ N V
Sbjct: 191 SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK------DKRVLSVLCDELKKNT-----VYD 239
Query: 62 SSIMTLCKNDIKGALKGMFNLIE-ISNGPVREKCLRFL 98
I + K L + ++ + + + L
Sbjct: 240 DIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKL 277
Score = 31.3 bits (71), Expect = 0.44
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQ 50
I L +L +D + VR A + N + D ++LQ
Sbjct: 158 KATIPLLINLLKDPNGDVRNWAAFAI----NINKYDNSDIRDCFVEMLQ 202
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 36.3 bits (83), Expect = 0.016
Identities = 56/330 (16%), Positives = 109/330 (33%), Gaps = 46/330 (13%)
Query: 1 MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEY-TPKVTDILGQLLQTNDTTELSV 59
+D IE LF L DE+ VRK + L L + + P + +I+ +LQ + +V
Sbjct: 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV 272
Query: 60 VQSSI---MTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEE 116
+ +TL + I + K + LV +K DI+ + +
Sbjct: 273 ALEACEFWLTLAEQPICKDVL----------VRHLPKLIPVLVNGMKYSDIDIILLKGDV 322
Query: 117 YTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPE 176
+ D ++ A L+ + EL+ I L +
Sbjct: 323 EGGSG----GDDTISDWNLRKCSAAALDVLANVY--RDELLPHI--LPLLKELLFHHEWV 374
Query: 177 DVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLL 236
+ I L + C + +++P L I D+ + + L
Sbjct: 375 VKESGILV-LGAIAEGCM-----QGMIPYLPELIPHL--IQCLSDKKALV--RSITCWTL 424
Query: 237 AELSPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDLPSLCKENNE----YTPK 283
+ + +VV + ++ ++ L V++ A +L +E Y
Sbjct: 425 SRYAH-WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAY 483
Query: 284 VTDILGQLLQTNDTTELSVVQSSIMTLCKN 313
+ D L L ++ +I TL +
Sbjct: 484 ILDTLVFAFSKYQHKNLLILYDAIGTLADS 513
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo
sapiens} PDB: 3odr_A 3ods_A 3o2q_A* 3o2s_A
Length = 386
Score = 35.2 bits (80), Expect = 0.025
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQS 62
+ I L L DE+V+V K+AI + L K L ++++ +EL
Sbjct: 100 KLIANLNMLLRDENVNVVKKAILTMTQLYKV----------ALQWMVKSRVISELQEACW 149
Query: 63 SIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFL 98
+++ DI L++ N +R ++F+
Sbjct: 150 DMVSAMAGDI-------ILLLDSDNDGIRTHAIKFV 178
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop,
transcription, protein binding; 2.40A {Drosophila
melanogaster}
Length = 257
Score = 34.3 bits (78), Expect = 0.037
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQS 62
I + L D V K+ I+ S+ K L L + + +
Sbjct: 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYKN----------GLQYLCSLMEPGDSAEQAW 139
Query: 63 SIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFL 98
+I++L K I ++I+ N +R ++FL
Sbjct: 140 NILSLIKAQI-------LDMIDNENDGIRTNAIKFL 168
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 34.2 bits (78), Expect = 0.061
Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 25/278 (8%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTELS 58
A+E + L S+ + A L +LC+ L +L+ + DT L
Sbjct: 216 AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 275
Query: 59 VVQSSIMTLCKNDI--------KGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIM 110
+I L K + L+ + V+ LR + + G D+
Sbjct: 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG--NIVTGNDLQ 333
Query: 111 TKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSF 170
T+ + + ++L + + I W+ +S AG E ++ + +
Sbjct: 334 TQVVINAGVLPALRLLLSSPKEN---IKKEACWT-ISNITAGNTEQIQAVIDANLIPPLV 389
Query: 171 DPSNPEDVDRSIYCSLHCVPYLCSAIPSTP-FVSYLCEQ-VLPKLDQIPETKDEAGGLDN 228
+ + + + S P + YL Q + L + E D ++
Sbjct: 390 KLLEVAEYK-TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR-IIEV 447
Query: 229 QLEALKLLAELSP--FYVVHEDTPQHITSIVDCLFVRK 264
L+AL+ + ++ + ++ I + K
Sbjct: 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.092
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 7/36 (19%)
Query: 21 KQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTE 56
KQA+K L + K Y L T E
Sbjct: 19 KQALKKLQASLK---LYADDSAPALA----IKATME 47
Score = 32.6 bits (73), Expect = 0.092
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 7/36 (19%)
Query: 264 KQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTE 299
KQA+K L + K Y L T E
Sbjct: 19 KQALKKLQASLK---LYADDSAPALA----IKATME 47
Score = 30.7 bits (68), Expect = 0.39
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 312 KNDIKVLSLSLGLNQCYHYRLDLTSAITIAWT 343
K +K L SL L Y D A+ I T
Sbjct: 19 KQALKKLQASLKL-----YADDSAPALAIKAT 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 32.5 bits (73), Expect = 0.25
Identities = 38/328 (11%), Positives = 99/328 (30%), Gaps = 50/328 (15%)
Query: 1 MDQA--IEALFDLCEDEDVSVRKQAIKDLPSLCKEN-NEYTPKVTDILGQ---------- 47
M A + L + D ++R + L L +N ++ + +L
Sbjct: 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRIL 60
Query: 48 -------LLQTNDTTELSVVQSSIMTLCKNDIKGALKG-MFNLIEISNGPVREKCLRFLV 99
L + D+ + +T + K +K + + + +
Sbjct: 61 AALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIA 120
Query: 100 PKIKMLGRDIMTKEIEEYTIDQCKKIL-RNVTGDEFMQIMD--LLAWSRLSQSLAGQKEL 156
I E+ + KI+ N ++ + LLA + +S Q +
Sbjct: 121 --------AIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA 172
Query: 157 MEIIKHHAELSKSFDPSNPEDVDRSI-YCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQ 215
+ + + L + + +++ +L+ + I + ++ + +
Sbjct: 173 L-VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCE 231
Query: 216 IPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCL----------FVRKQ 265
+ +D + Q A L ++ Y ++ + L V
Sbjct: 232 ATQAEDI----EVQAAAFGCLCKIMSKYY--TFMKPYMEQALYALTIATMKSPNDKVASM 285
Query: 266 AIKDLPSLCKENNEYTPKVTDILGQLLQ 293
++ ++C+E + ++ LQ
Sbjct: 286 TVEFWSTICEEEIDIAYELAQFPQSPLQ 313
Score = 32.1 bits (72), Expect = 0.32
Identities = 33/328 (10%), Positives = 99/328 (30%), Gaps = 47/328 (14%)
Query: 1 MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCK------ENNEYTPKVTDILGQLLQTNDT 54
+ QA+ ++ +L D+ + V++ + + + ++ P V LQ +
Sbjct: 409 VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-- 466
Query: 55 TELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEI 114
V ++ + NL+E F + L I
Sbjct: 467 ---PKVATN-----------CSWTIINLVEQLAEATPSPIYNFYPALVDGL--------I 504
Query: 115 EEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSN 174
+ R +++ + S + +M+ + + ++
Sbjct: 505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLE 564
Query: 175 PEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALK 234
+ + ++ V + + ++ ++ E KD A D+ A+
Sbjct: 565 DAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623
Query: 235 LLAELSPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDLPSLCKE-NNEYTPKV 284
LA + + +++ + L V A+ + + ++
Sbjct: 624 ALAA-----SLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS 678
Query: 285 TDILGQLLQT-NDTTELSVVQSSIMTLC 311
++ L Q ++ ++ +++++
Sbjct: 679 DAMMNVLAQMISNPNARRELKPAVLSVF 706
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 31.5 bits (72), Expect = 0.31
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTELS 58
+ + +D+ + A + + + NE V D L QLL + +
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE---Q 69
Query: 59 VVQSSIMTLC----KNDIK-------GALKGMFNLIEISNGPVREKCLRFL 98
++Q ++ L + + GAL + L+ N + ++ L L
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Score = 29.2 bits (66), Expect = 1.5
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTELS 58
A+ AL L + + ++A+ L ++ NE V D L QLL + + L
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 59 VVQSSIMTLCKND--------IKGALKGMFNLIEISNGPVREKCLRFL 98
++ + GAL + L+ N + ++ L L
Sbjct: 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 204
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex,
transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1
PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A
1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A
1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 31.3 bits (71), Expect = 0.46
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD------ILGQLLQTNDTTEL 57
AI L L DED V +A + L K+ + I+ + TND
Sbjct: 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77
Query: 58 SVVQSSIMTLCKND 71
++ L +
Sbjct: 78 RCTAGTLHNLSHHR 91
Score = 30.9 bits (70), Expect = 0.61
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTEL- 57
++ + L +V L L N E + L +++T +L
Sbjct: 144 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203
Query: 58 --SVVQSSIMTLCKNDIK-----GALKGMFNLIEISNGPVREKCLRFL 98
+ ++++C ++ G ++ + + + + + CL L
Sbjct: 204 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 31.0 bits (70), Expect = 0.48
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 125 ILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYC 184
I ++ E+ Q+++++ + ++ LA + ++ + + S + N DR I
Sbjct: 196 IFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLEEMYQ-TGSLNLHNQSHRDRVIGL 254
Query: 185 SLHC 188
+
Sbjct: 255 MMTA 258
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 30.8 bits (69), Expect = 0.73
Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 13/109 (11%)
Query: 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD--ILGQLLQTNDTTELSVV 60
++ + L +V L L N E + L+ T +
Sbjct: 276 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 335
Query: 61 QSSIMTLCKN-----DIK------GALKGMFNLIEISNGPVREKCLRFL 98
+ + K K G ++ + + + + + CL L
Sbjct: 336 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384
Score = 28.8 bits (64), Expect = 2.8
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD------ILGQLLQTNDTTEL 57
AI L L DED V +A + L K+ + I+ + TND
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 210
Query: 58 SVVQSSIMTLCKND 71
++ L +
Sbjct: 211 RCTSGTLHNLSHHR 224
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats,
repetitive structure, iron sulfur proteins, nitrogen
fixation; 2.60A {Azotobacter vinelandii} SCOP:
a.118.1.5
Length = 244
Score = 30.2 bits (68), Expect = 0.83
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLP 28
+EAL L D D VR+ LP
Sbjct: 75 PVEALTPLIRDSDEVVRRAVAYRLP 99
Score = 27.5 bits (61), Expect = 5.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLP 28
+E L + D D VR ++ +P
Sbjct: 123 PLEQLEQMAADRDYLVRAYVVQRIP 147
Score = 26.8 bits (59), Expect = 9.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 6 EALFDLCEDEDVSVRKQAIKDLP 28
+ L +L D D +VR A++
Sbjct: 197 DDLLELLHDPDWTVRLAAVEHAS 219
>2p5z_X Type VI secretion system component; structural genomics, unknown
function, PSI-2, protein struct initiative; 2.60A
{Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Length = 491
Score = 30.0 bits (68), Expect = 1.1
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 311 CKNDIKVLSLSL--GLNQCYHYRLDLTS 336
++ + VL+ L+ + Y + TS
Sbjct: 24 LQSPVDVLTFEGREQLSTPFRYDIQFTS 51
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 29.5 bits (66), Expect = 1.7
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 13/109 (11%)
Query: 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTEL 57
++ + L +V L L N E + L +++T +L
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 199
Query: 58 -SVVQSSIMTLCKND-------IKGALKGMFNLIEISNGPVREKCLRFL 98
+ L G ++ + + + + + CL L
Sbjct: 200 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248
Score = 28.0 bits (62), Expect = 5.6
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD------ILGQLLQTNDTTEL 57
AI L L DED V +A + L K+ + I+ + TND
Sbjct: 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74
Query: 58 SVVQSSIMTLCKND 71
++ L +
Sbjct: 75 RCTAGTLHNLSHHR 88
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein
BC008207 [HOMO sapiens], structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 27.5 bits (61), Expect = 2.8
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 252 HITSIVDCLFVRKQAIKDLP-----SLCKENNEYTPKVTDILGQLLQ 293
++SI++ L + + P + K + + K+ +I G +
Sbjct: 30 MVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAH 76
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 28.9 bits (65), Expect = 3.0
Identities = 47/329 (14%), Positives = 107/329 (32%), Gaps = 77/329 (23%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPK--VTDILGQLLQTNDTTELSV 59
+ E L +DED VRK A + L N + D L L+ ++ V
Sbjct: 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPM---V 176
Query: 60 VQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTI 119
V +++ L + + +L + + L+ +
Sbjct: 177 VANAVAALSEISESHPNSNLLDLN--------PQNINKLLTALNEC-------------- 214
Query: 120 DQCKKILRNVTGDEFMQ--IMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPED 177
E+ Q I+D L+ + + +E I + + +
Sbjct: 215 ------------TEWGQIFILDCLS----NYNPKDDREAQSICERVTPRLSHANSA---- 254
Query: 178 VDRSIYCSLHCVPYLCSAIP-STPFVSYLCEQVLPKLDQI----PETKDEAGGLDNQLEA 232
+ ++ + +P + + + L +++ P L + PE + A L
Sbjct: 255 ---VVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVA------LRN 305
Query: 233 LKLLAELSPFYVVHEDTPQHITSIVDCL----FVRKQAIKDLPSLCKENNEYTPKVTDIL 288
+ L+ + P + Q I +V+ + + + L + N + +L
Sbjct: 306 INLIVQKRPEILK-----QEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN-----IAQVL 355
Query: 289 GQLLQTNDTTELSVVQSSIMTLCKNDIKV 317
+L + ++ V+ ++ + + IKV
Sbjct: 356 AELKEYATEVDVDFVRKAVRAIGRCAIKV 384
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, STRU genomics of pathogenic protozoa
consortium, SGPP, unknown F; 1.60A {Leishmania major}
SCOP: b.122.1.8
Length = 172
Score = 27.9 bits (62), Expect = 3.2
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 110 MTKEIEEYTIDQCKKI-------LRNVTGDEFMQIM---DLLAWSRLSQSLAGQKELMEI 159
+ E +++ID K +RN M+ M D + + + G L E+
Sbjct: 24 LKSEPHKFSIDDLAKQKTSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEV 83
Query: 160 IKHHAELSKSFDPSNP 175
++ + + D ++
Sbjct: 84 VRLAYDDFTALDKTSE 99
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 28.5 bits (64), Expect = 3.2
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 2 DQAIEALFDLCEDEDV------SVRKQAIKDLPSLCKE 33
D ++ L D+ ++ + ++ K + P + KE
Sbjct: 355 DDTLDKLVDIVSEQVLTTISVEAILKAIAEKYPEVVKE 392
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 28.5 bits (64), Expect = 3.4
Identities = 31/171 (18%), Positives = 50/171 (29%), Gaps = 38/171 (22%)
Query: 5 IEAL--------FDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQL-------- 48
IE + F E + R I KE + T + L +
Sbjct: 146 IEPIQSRCAVFRFKPVPKEAMKKRLLEI-----CEKEGVKITEDGLEALIYISGGDFRKA 200
Query: 49 ---LQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISN-GPVREKCLRFLVPK--- 101
LQ V +I + + + N RE R +V
Sbjct: 201 INALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMS 260
Query: 102 ----IKMLGRDIMTKEIEEYTIDQCKKIL-----RNVTG-DEFMQIMDLLA 142
+ L R+I++ I++ Q L R G +E +Q+ LA
Sbjct: 261 GEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLA 311
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 28.3 bits (62), Expect = 4.3
Identities = 24/246 (9%), Positives = 69/246 (28%), Gaps = 23/246 (9%)
Query: 2 DQAIEALFDLCEDE-DVSVRKQAIKDLPSLCKENNEYTPKVTDILGQ----LLQTNDTTE 56
D I + L + E D + + + +LC+ + E T V LG +
Sbjct: 48 DHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHEN 107
Query: 57 LSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPK-IKMLGRDIMTKEIE 115
+ N + G + + + + L+ + + ++
Sbjct: 108 CVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAAR 167
Query: 116 EYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNP 175
+ I+ + + + W+ + G L+++ +
Sbjct: 168 DGVIELITRNVHYTALE----------WAERLVEIRGLCRLLDVCSELEDYKYESAMDIT 217
Query: 176 EDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKL 235
C+ + + + ++D+ + K A +++++
Sbjct: 218 GSSSTIASV---CLARIYENMYYDEA----KARFTDQIDEYIKDKLLAPDMESKVRVTVA 270
Query: 236 LAELSP 241
+ L
Sbjct: 271 ITALLN 276
Score = 27.9 bits (61), Expect = 5.4
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 17/114 (14%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD------ILGQLLQTNDTT 55
+ ++ L LCEDED L + + + K+ IL L+
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA 723
Query: 56 E-----------LSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFL 98
++ + L + DI L G+ L + + RE + L
Sbjct: 724 VQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 28.2 bits (62), Expect = 4.7
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 1 MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYT-PKVTDILGQLLQT 51
+ AI+ L L +D VR+ A+ L + + E P+V DI L
Sbjct: 645 LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV 696
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A*
1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A*
1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Length = 377
Score = 27.5 bits (61), Expect = 7.3
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 125 ILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKS-----FDPSNPEDVD 179
I N+T + + ++ L+ ++ L+ +K E K N D
Sbjct: 171 IFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRI 230
Query: 180 RSIYCSLHC 188
+ + +HC
Sbjct: 231 QVLRNMVHC 239
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat
motif, de novo protein; 1.80A {Synthetic construct}
PDB: 4db9_A 4dba_A
Length = 210
Score = 27.2 bits (61), Expect = 7.3
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTD-----ILGQLLQTNDTTELS 58
+ + D + A++ L + NE V D L QLL + +
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE---Q 69
Query: 59 VVQSSIMTLC 68
++Q ++ L
Sbjct: 70 ILQEALWALS 79
Score = 26.8 bits (60), Expect = 8.5
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVT-----DILGQLLQTNDTTELS 58
A+ AL L + + ++A+ L ++ NE V + L QL +
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE---K 195
Query: 59 VVQSSIMTLCK 69
+ + + L K
Sbjct: 196 IQKEAQEALEK 206
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 27.2 bits (61), Expect = 9.0
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKEN 34
D IEA+ E++S+++Q DL C ++
Sbjct: 393 DMVIEAVI-----ENISLKQQIFADLEKYCPQH 420
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,067,744
Number of extensions: 295214
Number of successful extensions: 609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 82
Length of query: 343
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 249
Effective length of database: 4,077,219
Effective search space: 1015227531
Effective search space used: 1015227531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)