RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17474
(343 letters)
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 40.2 bits (92), Expect = 2e-04
Identities = 21/237 (8%), Positives = 53/237 (22%), Gaps = 15/237 (6%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
A+ + C D++ R L + + L +
Sbjct: 49 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAI 108
Query: 62 SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121
S CK + + K + + + + + I
Sbjct: 109 ESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDP- 167
Query: 122 CKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
+ ++ A + + ++ + + +
Sbjct: 168 ----------NGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 217
Query: 182 IYCSLHCVPYLCSAIPSTPFVSYLCE----QVLPKLDQIPETKDEAGGLDNQLEALK 234
L + E +LP LD + D+ + + ++ LK
Sbjct: 218 KRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 274
Score = 27.5 bits (59), Expect = 2.1
Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTND 53
+ LF L +D + R + + L + + + +
Sbjct: 20 NDDELFRLLDDHNSLKRISSARVLQLRGGQ------DAVRLAIEFCSDKN 63
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 36.7 bits (84), Expect = 0.004
Identities = 40/324 (12%), Positives = 89/324 (27%), Gaps = 46/324 (14%)
Query: 1 MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVV 60
M + L D+ + V A + +L ++N E + L +V
Sbjct: 177 MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSR-------IV 229
Query: 61 QSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTID 120
S+ L ++ + + L+ P R +T+ +E
Sbjct: 230 TSASTDLQDYTYYFVPAPWLSVKLL-------RLLQCYPPPEDPAVRGRLTECLETILNK 282
Query: 121 QCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELME-IIKHHAELSKSFDPSNPEDVD 179
+ + L L + L+ + + + +
Sbjct: 283 AQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETN------ 336
Query: 180 RSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAEL 239
Y +L + L S+ S V E V+ L + + A+ LL +
Sbjct: 337 -LRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDV-------SVRQRAVDLLYAM 388
Query: 240 SPFYVVHEDTPQHITSIVDCLF---------VRKQAIKDLPSLCKENNEYTPKVTDILGQ 290
+ IV + +R++ + + L ++ D +
Sbjct: 389 C--------DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILN 440
Query: 291 LLQTNDTTELSVVQSSIMTLCKND 314
L++ V ++ + N
Sbjct: 441 LIRIAGDYVSEEVWYRVIQIVINR 464
Score = 27.1 bits (59), Expect = 3.4
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
Q + + E D S+R++ + + L ++ D + L++ V
Sbjct: 395 QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVW 454
Query: 62 SSIMTLCKND---IKGALKGMFNLIEISNGP 89
++ + N A K +F ++
Sbjct: 455 YRVIQIVINRDDVQGYAAKTVFEALQAPACH 485
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 35.2 bits (79), Expect = 0.013
Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 13/192 (6%)
Query: 5 IEALFDLCEDEDVSVRKQAIKDLPSLCK--ENNEYTPKVTDILGQLLQTNDTTELSVVQS 62
I L D +EDV +R +IK L ++ ++ L + D L++ +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQ 71
Query: 63 --SIMTL--CKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYT 118
+ TL + L + +L + VR+K + L + + + ++E +
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESL----RAISHEHSPSDLEAHF 127
Query: 119 IDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDV 178
+ K++ L + + E+ ++ L P
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFS---VCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAA 184
Query: 179 DRSIYCSLHCVP 190
+ +
Sbjct: 185 ASKLGEFAKVLE 196
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 34.5 bits (77), Expect = 0.018
Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 14/154 (9%)
Query: 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNE-----YTPKVTDILGQLLQT-NDTTE 56
+AI L L DED V +A + L K+ +P++ + + +Q ND
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76
Query: 57 LSVVQSSIMTLCKNDI-------KGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDI 109
++ L + G + + ++ V + L +
Sbjct: 77 ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH-QEGA 135
Query: 110 MTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAW 143
+ + +L D L
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 34.3 bits (77), Expect = 0.023
Identities = 38/274 (13%), Positives = 86/274 (31%), Gaps = 30/274 (10%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYT-PKVTDILGQLLQTNDTTELSVV 60
+ ++ + L ED++ V+ A+K L L + EY + D L + ++ +
Sbjct: 44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDIS 103
Query: 61 QSSIMTLCK-------------NDIKGALKGMFNLIEISNGP-VREKCLRFLVPKIKMLG 106
+ T+ N K + + I V+ + L + + G
Sbjct: 104 SIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 163
Query: 107 RDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAEL 166
++ + L + ++ ++A L S G +++I+H L
Sbjct: 164 GLLVNFHPS--ILTCLLPQLTSP--RLAVRKRTIIALGHLVMSC-GNIVFVDLIEH---L 215
Query: 167 SKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGL 226
++ R+ + C+ + YL + + + DE
Sbjct: 216 LSELSKNDSMSTTRT---YIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDE--LR 269
Query: 227 DNQLEALKLLAELSPFYVVHEDTPQHITSIVDCL 260
+ ++A + P V I + L
Sbjct: 270 EYCIQAFESFVRRCPKEVY-PHVSTIINICLKYL 302
Score = 30.9 bits (68), Expect = 0.24
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 1 MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVV 60
++ L CE + R + L L + L L + + S V
Sbjct: 926 VENIWALLLKHCECAEEGTRNVVAECLGKLTL---IDPETLLPRLKGYLISGSSYARSSV 982
Query: 61 QSSIMTLCKND-------IKGALKGMFNLIEISNGPVREKCLRFL 98
+++ + +K + +E + VR L
Sbjct: 983 VTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTF 1027
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter
vinelandii [TaxId: 354]}
Length = 233
Score = 30.5 bits (68), Expect = 0.22
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 4 AIEALFDLCEDEDVSVRKQAIKDLP 28
+EAL L D D VR+ LP
Sbjct: 67 PVEALTPLIRDSDEVVRRAVAYRLP 91
Score = 26.6 bits (58), Expect = 4.4
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 3 QAIEALFDLCEDEDVSVRKQAIKDLPS 29
E+L + +D + VR+ L
Sbjct: 162 LPEESLGLMTQDPEPEVRRIVASRLRG 188
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 28.4 bits (62), Expect = 0.57
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
D+A E L + +ED +R A + + L++ + V
Sbjct: 21 DEAFEPLLESLSNEDWRIRGAAAW---------IIGNFQDERAVEPLIKLLEDDSGFVRS 71
Query: 62 SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFL 98
+ +L + + M L E G R+ + +L
Sbjct: 72 GAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYL 108
Score = 26.8 bits (58), Expect = 1.7
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 1 MDQAIEALFDLCEDEDVSVRKQAIKDL 27
++ A+ L E RK A+ L
Sbjct: 82 GERVRAAMEKLAETGTGFARKVAVNYL 108
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 28.3 bits (63), Expect = 0.65
Identities = 14/110 (12%), Positives = 30/110 (27%), Gaps = 17/110 (15%)
Query: 31 CKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPV 90
E + P +L+Q + V ++ + + D K + V
Sbjct: 20 TNETDVLMPAPITYAHRLVQ----RQAEVRKNGTLPWLRPDAKSQVT----FQYDDGKIV 71
Query: 91 REKCLRFLVPKIKMLGRDIMTKEIEEYTIDQC---------KKILRNVTG 131
+ + + + + + + E I K N TG
Sbjct: 72 GIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTG 121
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 29.0 bits (64), Expect = 1.1
Identities = 39/323 (12%), Positives = 94/323 (29%), Gaps = 50/323 (15%)
Query: 3 QAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQS 62
Q I L + + + L + +++ + + + L ++ +VV S
Sbjct: 199 QNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANS---AVVLS 255
Query: 63 SIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQC 122
++ L K L+ + + P + +L + + + I+
Sbjct: 256 AVKVLMK---------FLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLI 306
Query: 123 KKILRNVTGDEFMQIMDLLAWS--------RLSQSLAGQKELMEIIKHHAELSKSFDPSN 174
+ + E + LA Q + +++ E + D
Sbjct: 307 VQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDF 366
Query: 175 PEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALK 234
R+I V VS L + + K++ + + + ++
Sbjct: 367 VRKAVRAIGRCAIKVEQSAERC-----VSTLLDLIQTKVNYV---------VQEAIVVIR 412
Query: 235 LLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCK------ENNEYTPKVTDIL 288
+ P SI+ L ++ + + E E ++L
Sbjct: 413 DIFR---------KYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELL 463
Query: 289 GQLLQTNDTTELSVVQSSIMTLC 311
L+ E + VQ +++T
Sbjct: 464 ESFLE-GFHDESTQVQLTLLTAI 485
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393
{Escherichia coli o6 [TaxId: 217992]}
Length = 187
Score = 27.6 bits (61), Expect = 1.8
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 311 CKNDIKVLSLSL--GLNQCYHYRLDLTSA 337
++ + VL+ L+ + Y + TS+
Sbjct: 8 LQSPVDVLTFEGREQLSTPFRYDIQFTSS 36
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
superhelical domain {Lamprey (Ichthyomyzon unicuspis)
[TaxId: 30308]}
Length = 336
Score = 26.8 bits (59), Expect = 4.3
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 231 EALKLLAELSPFYVVHEDTPQHITSIVDCL-FVRKQAIKDLPSLCKENNEYTPKVTDILG 289
LK L E + V HED P + L V ++ + + +Y + D +
Sbjct: 24 TVLKHLVENNQLSV-HEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVP 82
Query: 290 Q 290
Sbjct: 83 A 83
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein
Hpr {Bacillus subtilis [TaxId: 1423]}
Length = 162
Score = 25.5 bits (55), Expect = 8.1
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 118 TIDQCKKILRNVTGDEFMQIMD 139
+ + ++R++ GD+FM+I +
Sbjct: 139 EVAEMMCMIRHIYGDDFMEIFE 160
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,233,716
Number of extensions: 57557
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 28
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)