Query psy17475
Match_columns 346
No_of_seqs 332 out of 1388
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 23:27:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00240 60S ribosomal protein 100.0 3.4E-82 7.4E-87 610.1 25.9 256 1-256 17-283 (323)
2 PTZ00135 60S acidic ribosomal 100.0 1.2E-80 2.6E-85 599.5 25.5 257 1-257 19-277 (310)
3 KOG0815|consensus 100.0 6.5E-69 1.4E-73 482.5 18.2 225 1-225 19-245 (245)
4 PRK04019 rplP0 acidic ribosoma 100.0 3.4E-64 7.5E-69 490.3 21.7 246 1-250 17-265 (330)
5 cd05795 Ribosomal_P0_L10e Ribo 100.0 1.6E-51 3.4E-56 368.5 15.8 162 1-162 12-175 (175)
6 cd05796 Ribosomal_P0_like Ribo 100.0 1.9E-45 4.1E-50 325.8 14.1 147 1-148 12-161 (163)
7 KOG0816|consensus 100.0 4E-42 8.6E-47 305.8 12.1 177 1-178 32-213 (223)
8 KOG0815|consensus 100.0 1.3E-29 2.9E-34 228.5 4.6 78 269-346 140-217 (245)
9 COG0244 RplJ Ribosomal protein 99.9 1.5E-26 3.3E-31 207.1 2.7 155 1-177 17-174 (175)
10 PTZ00135 60S acidic ribosomal 99.8 4.7E-22 1E-26 192.4 4.2 76 270-345 141-216 (310)
11 PTZ00240 60S ribosomal protein 99.8 9.2E-22 2E-26 190.6 4.3 76 270-345 148-223 (323)
12 cd00379 Ribosomal_L10_P0 Ribos 99.8 7E-20 1.5E-24 159.9 5.0 109 2-116 13-125 (155)
13 PRK04019 rplP0 acidic ribosoma 99.8 3.3E-19 7.1E-24 174.4 6.4 209 21-248 70-291 (330)
14 PF00466 Ribosomal_L10: Riboso 99.7 8.2E-18 1.8E-22 136.9 6.7 83 2-88 16-99 (100)
15 PRK00099 rplJ 50S ribosomal pr 99.7 1.7E-16 3.8E-21 141.6 7.9 84 1-89 15-99 (172)
16 cd05797 Ribosomal_L10 Ribosoma 99.7 1.9E-16 4.2E-21 139.1 7.7 85 1-90 14-99 (157)
17 cd05795 Ribosomal_P0_L10e Ribo 98.9 5.9E-10 1.3E-14 100.1 2.0 42 270-311 134-175 (175)
18 cd05796 Ribosomal_P0_like Ribo 97.1 0.00015 3.3E-09 64.4 0.9 29 269-297 135-163 (163)
19 KOG0816|consensus 96.8 0.00065 1.4E-08 61.9 2.4 60 269-328 155-214 (223)
20 PF00428 Ribosomal_60s: 60s Ac 96.8 0.00024 5.3E-09 56.8 -0.9 45 211-255 1-45 (88)
21 COG0244 RplJ Ribosomal protein 95.0 0.0021 4.6E-08 57.8 -3.1 57 269-326 118-174 (175)
22 KOG4241|consensus 93.7 0.14 3E-06 47.2 5.6 80 3-88 86-166 (245)
23 COG2117 Predicted subunit of t 69.3 8.9 0.00019 34.5 4.7 69 139-215 2-80 (198)
24 PF00428 Ribosomal_60s: 60s Ac 53.4 5.2 0.00011 31.8 0.4 45 185-229 1-47 (88)
25 PF08800 VirE_N: VirE N-termin 44.8 32 0.00069 29.5 4.0 31 2-32 26-56 (136)
26 cd05832 Ribosomal_L12p Ribosom 41.8 39 0.00085 28.1 3.9 39 211-254 16-59 (106)
27 PF07697 7TMR-HDED: 7TM-HD ext 39.4 20 0.00043 32.3 2.0 30 280-309 190-219 (222)
28 TIGR03685 L21P_arch 50S riboso 32.0 64 0.0014 26.7 3.7 25 211-235 16-45 (105)
29 PF05872 DUF853: Bacterial pro 29.1 2.7E+02 0.0059 29.2 8.3 110 107-221 25-180 (502)
30 COG1419 FlhF Flagellar GTP-bin 27.4 2.3E+02 0.005 29.1 7.4 88 8-107 283-385 (407)
31 COG0303 MoeA Molybdopterin bio 26.9 63 0.0014 33.0 3.4 69 98-167 142-224 (404)
32 TIGR01896 cas_AF1879 CRISPR-as 24.5 3.5E+02 0.0076 26.2 7.8 102 102-214 149-256 (271)
33 PRK14547 rplD 50S ribosomal pr 24.0 90 0.002 30.6 3.7 70 87-159 67-148 (298)
34 PLN00208 translation initiatio 22.5 1.1E+02 0.0024 26.9 3.6 48 123-171 59-119 (145)
35 PF06023 DUF911: Archaeal prot 22.5 49 0.0011 32.3 1.6 37 309-346 221-257 (289)
36 PTZ00329 eukaryotic translatio 20.8 1.1E+02 0.0024 27.2 3.3 50 124-174 60-122 (155)
No 1
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=100.00 E-value=3.4e-82 Score=610.06 Aligned_cols=256 Identities=37% Similarity=0.625 Sum_probs=249.0
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCC--CCcccc-------cCcccCCeEEE
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHN--PGLERL-------LPHIKGNVGFV 71 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~--~~l~~L-------~~~l~G~~gli 71 (346)
+++++|++||||+++||||+|||+||+.||++++|+||||||||+||++..++. +++++| .+|++||+||+
T Consensus 17 ~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~~~~~~l~Gnvgli 96 (323)
T PTZ00240 17 DCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQCEEKNLLSGNTGLI 96 (323)
T ss_pred HHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhccccccccCCEEEE
Confidence 478999999999999999999999999999999999999999999999986643 336666 49999999999
Q ss_pred EecCCHHHHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--h
Q psy17475 72 FTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--S 149 (346)
Q Consensus 72 FTn~dp~ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~ 149 (346)
|||+||++++++|++|++++|||+|+|||+||+||+|+|+|+|++++|||+|||||||++|+|+|.+|++||++||+ +
T Consensus 97 FTn~~p~ev~~~l~~~k~~a~AraG~IAp~dVvvpaG~T~~~P~~~s~fq~LGIpTkI~kGkIeI~~d~~v~k~Ge~V~~ 176 (323)
T PTZ00240 97 FTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDN 176 (323)
T ss_pred EeCCCHHHHHHHHHHcCCcccccCCCCCCceEEECCCCCCCCCcchHHHHHcCCCeEecCcEEEEecCeEEecCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hHhHHHHHcCCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHH
Q psy17475 150 REATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVL 229 (346)
Q Consensus 150 ~~A~LL~~L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ 229 (346)
+||.||++|||+|++||++++++||+|.+|++++|+||+|+|.++|++|++++++||++++|||++|+||+|.|||++++
T Consensus 177 ~~A~LL~~L~IkP~~~gl~l~~vyd~g~i~~~~vL~i~~e~~~~~~~~a~~~~~~lsl~~~~pt~~si~~~i~~a~~~~~ 256 (323)
T PTZ00240 177 STATLLQKLNISPFYYQVEVLSVWDRGVLFTREDLSMTEDVVEKMLMEGLSNVAAMSLGAGIPTAATIGPMLVDAFKNLL 256 (323)
T ss_pred HHHHHHHHcCCCeEEEEEEEEEEEeCCeecCHHHcCCCHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccchhhHHHHhcCchhHH
Q psy17475 230 AVAAATEVDFEQAKTVKEFLKDPSKFL 256 (346)
Q Consensus 230 ala~~~~~~~~~~e~ik~~l~~p~~~a 256 (346)
+||++++|+||+.++++.+++||++|+
T Consensus 257 alav~~~~~~~~~~~~~~~~A~~~~~~ 283 (323)
T PTZ00240 257 AVSVATSYEFEEHNGKELREAALEGLL 283 (323)
T ss_pred HHhhhcCcCChhhHHHHHhhhCHHhhh
Confidence 999999999999999999999999999
No 2
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=100.00 E-value=1.2e-80 Score=599.53 Aligned_cols=257 Identities=54% Similarity=0.883 Sum_probs=253.2
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV 80 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev 80 (346)
+++++|++++|++++||+++|||+||+.||++++++||||||||+||++..++.|++++|.++|+||+||+|||+||+++
T Consensus 19 e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~~gliFTn~dp~ev 98 (310)
T PTZ00135 19 ELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVGFVFTKDDLFEV 98 (310)
T ss_pred HHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhccCCEEEEEECCCHHHH
Confidence 46899999999999999999999999999998999999999999999998777788999999999999999999999999
Q ss_pred HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475 81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML 158 (346)
Q Consensus 81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L 158 (346)
+++|.+|++++|||+|.|||+||+||+|+|+|+|+++||||+|||||||++|+|+|.+|++||++||+ ++||+||++|
T Consensus 99 ~k~l~~~k~~~~AKaG~iAp~dv~ip~G~t~~~P~~~~~fq~LgipTkI~kG~I~I~~d~~v~k~Ge~v~~~~A~LL~~L 178 (310)
T PTZ00135 99 KPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHLIKEGQKVGASQAVLLQKL 178 (310)
T ss_pred HHHHHHcCCccccccCCCCCceEEEcCCCCCCCcchhhHHHHcCCceEecCCeEEEecCeEEecCCCCcCHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhcccc
Q psy17475 159 NISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238 (346)
Q Consensus 159 ~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~ 238 (346)
||+|++||+++.++||+|.+|++++|+||+|+|.++|++|++++.+||+++||||++++||+|.|||+|+++++++++|+
T Consensus 179 ~I~p~~~~l~~~~~yd~g~~~~~~vL~i~~e~~~~~~~~~~~~i~als~aag~pt~~s~p~~ia~a~k~~~a~a~~~~~~ 258 (310)
T PTZ00135 179 NIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHSILNAFKNLAAIGLESGFT 258 (310)
T ss_pred CCCeEEEEEEEEEEEECCeEeCHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhcCchhHHh
Q psy17475 239 FEQAKTVKEFLKDPSKFLA 257 (346)
Q Consensus 239 ~~~~e~ik~~l~~p~~~a~ 257 (346)
||+++++|.+++||++|++
T Consensus 259 ~~~~~~~~~~~a~~~~~~~ 277 (310)
T PTZ00135 259 FPLAEKIKEALANPSAAAA 277 (310)
T ss_pred ChhhHHHHHhhcCchhhcc
Confidence 9999999999999999997
No 3
>KOG0815|consensus
Probab=100.00 E-value=6.5e-69 Score=482.51 Aligned_cols=225 Identities=72% Similarity=1.160 Sum_probs=222.3
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV 80 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev 80 (346)
+++++|+.++++..||+.+.|||+||+.|||.++++||||||||+|++.+.+.+|.++++.++++||+||+||+.|..|+
T Consensus 19 ~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a~vlmgkntm~rrair~~~~~~~~~~~llp~~~g~vgfvftk~~L~ei 98 (245)
T KOG0815|consen 19 QLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDAVVLMGKNTMMRRAIRGHLENNPALEKLLPVVKGNVGFVFTKGDLKEI 98 (245)
T ss_pred HHHHhcCceEEEeecchhhHHHHHHHHHhcCceeeeechhHHHHHHHHhccCCcHHHHhhccceeeceeEEEEeccHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475 81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML 158 (346)
Q Consensus 81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L 158 (346)
++.+.++++.++||+|+|||+||+||+++||++|+++||||+|||||||.||+|||.+|++++|+||| +|+|+||+||
T Consensus 99 ~~~i~~n~~~apar~GaiAp~dV~V~~~nTg~~P~ktsfFQaLgIpTKIsrGtiEIlsdV~lik~GDKVGaSEAtLLnmL 178 (245)
T KOG0815|consen 99 RKEIIENKVGAPARVGAIAPIDVTVPAQNTGLGPEKTSFFQALGIPTKISRGTIEILSDVQLIKTGDKVGASEATLLNML 178 (245)
T ss_pred HHHHHhcccccccccCCcCCceEEeccccCCCCcchhhhhhhcCCceeeecceEEecccceeeccCCccChhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHH
Q psy17475 159 NISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGF 225 (346)
Q Consensus 159 ~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~ 225 (346)
||+||+|||.++++||||++|+||+||||+|++.+.|.+|+++++++||.++|||.+|+||++.|+|
T Consensus 179 ~IsPFsyGLvv~qVyDnGsiy~pevLDiteE~l~~~f~~~vs~va~~sL~~~ypt~asv~h~~~n~~ 245 (245)
T KOG0815|consen 179 NISPFSYGLVVQQVYDNGSIYNPEVLDITEEDLFSKFLSGVSNVASVSLAAGYPTLASVPHSFINAY 245 (245)
T ss_pred CCCccccceEEEEEecCCcccChhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCcccccchhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 4
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=100.00 E-value=3.4e-64 Score=490.27 Aligned_cols=246 Identities=31% Similarity=0.517 Sum_probs=234.9
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV 80 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev 80 (346)
+++++|++++|++++|++++|+|+||+.||+.++|+|||||||++||++..+ +++++|.++|+|++||+|||+||+++
T Consensus 17 ~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~--~~~~~L~~~l~G~~alift~~dp~~v 94 (330)
T PRK04019 17 ELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGE--EDLEKLEDYLEGQVALIFTNMNPFKL 94 (330)
T ss_pred HHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCc--ccHHHHHhhccCCEEEEEECCCHHHH
Confidence 3688999999999999999999999999998899999999999999999854 56999999999999999999999999
Q ss_pred HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCc-hhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHH
Q psy17475 81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNM 157 (346)
Q Consensus 81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~-~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~ 157 (346)
+++|.+|++++|||+|+|||+||+||+|+|++.|++ .++||+|||||+|++|+|+|.+|++||++|++ +++|.+|++
T Consensus 95 ~k~l~~~~~~~~ak~G~iA~~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~~~G~~v~~~~a~lL~~ 174 (330)
T PRK04019 95 YKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEVISPELANVLQK 174 (330)
T ss_pred HHHHHHcCCcccCCCCCCCCCeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEecCCCCcCHHHHHHHHH
Confidence 999999999999999999999999999999999987 69999999999999999999999999999999 999999999
Q ss_pred cCCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhccc
Q psy17475 158 LNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEV 237 (346)
Q Consensus 158 L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~ 237 (346)
|||+|++|++++.++|++|.+|++++|+||++++..+|.+|++++++||++++|||++++||+|.+||+++++|+++++|
T Consensus 175 LgI~p~~~~~~i~a~~~~G~~~~~~~l~i~~e~~~~~i~~A~~~a~~Ls~~~~~pt~~tl~~~i~kA~~~a~aLa~~~~~ 254 (330)
T PRK04019 175 LGIKPIEVGLDLKAAYEDGVIYTPEVLAIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLIQKAFREAKALAVEAGI 254 (330)
T ss_pred cCCCHHHhhhHHHHHHhcCCccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHhc
Q psy17475 238 DFEQAKTVKEFLK 250 (346)
Q Consensus 238 ~~~~~e~ik~~l~ 250 (346)
.+ .+.++..|.
T Consensus 255 ~t--~e~~~~il~ 265 (330)
T PRK04019 255 VT--PETADDILS 265 (330)
T ss_pred CC--hhhHHHHHH
Confidence 65 445554443
No 5
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=100.00 E-value=1.6e-51 Score=368.49 Aligned_cols=162 Identities=60% Similarity=0.962 Sum_probs=157.9
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV 80 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev 80 (346)
+++++|++++|++++|++++|+++||+.||++++|+|||||||++||++..++.+++++|.++|+|++||+|||+||+++
T Consensus 12 e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~liFt~~dp~~v 91 (175)
T cd05795 12 ELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGFIFTNGDPFEI 91 (175)
T ss_pred HHHHhCCEEEEEEecCCChHHHHHHHHHhhCCCEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEEEEEECCCHHHH
Confidence 46899999999999999999999999999988999999999999999998777778999999999999999999999999
Q ss_pred HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475 81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML 158 (346)
Q Consensus 81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L 158 (346)
+++|++|++++|||+|+|||+||+||+|+|+|+|+++++||+|||||+|++|+|+|.+|++||++||+ ++||.||++|
T Consensus 92 ~k~l~~~~~~~~ar~G~iA~~dvvi~~G~t~~~p~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~~v~~~~A~lL~~l 171 (175)
T cd05795 92 RKILEENKVPAPAKPGAIAPCDVVVPAGPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGEKVGASEATLLNKL 171 (175)
T ss_pred HHHHHHcCCcccccCCCccCceEEEcCCCcCCCCCchHHHHHcCCceEEecCEEEEecCeEEecCCCCcCHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCc
Q psy17475 159 NISP 162 (346)
Q Consensus 159 ~I~p 162 (346)
||+|
T Consensus 172 ~i~P 175 (175)
T cd05795 172 NIKP 175 (175)
T ss_pred CCCC
Confidence 9998
No 6
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=100.00 E-value=1.9e-45 Score=325.77 Aligned_cols=147 Identities=31% Similarity=0.458 Sum_probs=140.4
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhcccc--CCCCcccccCcccCCeEEEEecCCHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLE--HNPGLERLLPHIKGNVGFVFTRGDLN 78 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~--~~~~l~~L~~~l~G~~gliFTn~dp~ 78 (346)
++|++|++++|++++|++++|+|+||+.||+. +|+|||||||++||++..+ ..+++++|.++|+|++||+|||+||+
T Consensus 12 e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~~~lift~~dp~ 90 (163)
T cd05796 12 EAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQVGLLFTNEPPE 90 (163)
T ss_pred HHHHhCCEEEEEEecCCCHHHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCCEEEEEECCCHH
Confidence 46899999999999999999999999999997 9999999999999998764 46789999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCC-chhhhhhcCCceEEecceEEEeeceeEeecCCc
Q psy17475 79 EVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPE-KTSFFQALSIPTKISKGTIEIINDVHILKEGDS 148 (346)
Q Consensus 79 ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~-~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~ 148 (346)
+++++|.+|++++|||+|+|||+||+||+|+|++.|+ +.++||+|||||+|++|+|+|.+|++||++||+
T Consensus 91 ~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgiptki~~G~I~i~~d~~v~k~G~~ 161 (163)
T cd05796 91 EVIEYFDSYSEPDFARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEGKV 161 (163)
T ss_pred HHHHHHHHcCCcccccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCCeEEeCCEEEEecCcEEECCCCC
Confidence 9999999999999999999999999999999998875 589999999999999999999999999999997
No 7
>KOG0816|consensus
Probab=100.00 E-value=4e-42 Score=305.83 Aligned_cols=177 Identities=29% Similarity=0.456 Sum_probs=168.1
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhcccc--CCCCcccccCcccCCeEEEEecCCHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLE--HNPGLERLLPHIKGNVGFVFTRGDLN 78 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~--~~~~l~~L~~~l~G~~gliFTn~dp~ 78 (346)
+++++|+++||+++.|||+..+++||..|+ +++|+||||++|.+||+...+ ..+++++++..++|.+||+|||+++.
T Consensus 32 ~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k-~sr~f~GknKVm~vaLG~~~~dE~~~~l~klskll~G~~GLlFTd~~ke 110 (223)
T KOG0816|consen 32 EAVDKYPYVFVFEVPNMRNTTLKEIRQDFK-NSRFFFGKNKVMQVALGRSREDEYKENLYKLSKLLKGSVGLLFTDMSKE 110 (223)
T ss_pred HHHhhCCeEEEEEcCCcchHHHHHHHHHhh-ccceecchhhHHHHHhcCCchhhHHHHHHHhhhhccCceEEEecCCCHH
Confidence 367899999999999999999999999999 689999999999999999864 36789999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCCCCcEEEcCCCCC-CCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHH
Q psy17475 79 EVREKLLENKVQAPARNGAIAPCPVTIPAQNTG-LGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLL 155 (346)
Q Consensus 79 ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~-~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL 155 (346)
++.++|.+|...+|||+|++||.+|+||+|+.. +.+++.+.+|+|||||++.+|+|++.+|++||++||+ +.||.||
T Consensus 111 eV~e~f~sy~~~DyaR~g~vA~~Tv~ip~Gpl~~f~hsmEP~lRklglPt~lk~G~vtL~sdy~VCeEG~~Ld~rqA~IL 190 (223)
T KOG0816|consen 111 EVIEWFRSYVEEDYARAGDVAPETVTIPEGPLEQFAHSMEPQLRKLGLPTKLKKGVVTLLSDYTVCEEGDVLDPRQAKIL 190 (223)
T ss_pred HHHHHHHHHHHHhhhccCCcCcceEeecCcchhhcccccchhhHhhcCceeecCCeEEEecCceeecCCcccCHHHHHHH
Confidence 999999999999999999999999999999964 7889999999999999999999999999999999999 9999999
Q ss_pred HHcCCCcceeeeeeeEEecCCcc
Q psy17475 156 NMLNISPFSYGLIIKMVYDSGTI 178 (346)
Q Consensus 156 ~~L~I~p~~~~l~i~~~~~~g~~ 178 (346)
++||+++.+|++.+.++|+..+.
T Consensus 191 Klfg~kma~Fkl~~~~~w~~s~~ 213 (223)
T KOG0816|consen 191 KLFGKKMAKFKLAVKAYWSKSSG 213 (223)
T ss_pred HHHhHhhHhheEEEEEEEcCccc
Confidence 99999999999999999997543
No 8
>KOG0815|consensus
Probab=99.95 E-value=1.3e-29 Score=228.54 Aligned_cols=78 Identities=56% Similarity=0.900 Sum_probs=75.4
Q ss_pred CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhhC
Q psy17475 269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE 346 (346)
Q Consensus 269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~~ 346 (346)
+.+||+||+||+|||++|++|+|+|||||+|||+||+||||+||+|||.+++|||||+||+||+||||||+++++|.+
T Consensus 140 aLgIpTKIsrGtiEIlsdV~lik~GDKVGaSEAtLLnmL~IsPFsyGLvv~qVyDnGsiy~pevLDiteE~l~~~f~~ 217 (245)
T KOG0815|consen 140 ALGIPTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSYGLVVQQVYDNGSIYNPEVLDITEEDLFSKFLS 217 (245)
T ss_pred hcCCceeeecceEEecccceeeccCCccChhHHHHHhhhCCCccccceEEEEEecCCcccChhhcCCcHHHHHHHHHH
Confidence 358999999999999999999999999999999999999999999999999999999999999999999999999863
No 9
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.5e-26 Score=207.11 Aligned_cols=155 Identities=24% Similarity=0.354 Sum_probs=145.5
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNE 79 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~e 79 (346)
+++++|++++|+||+|+++.|+++||++||+. ++++|+||||+++|+++. +.+.|.++++|+++++||++||++
T Consensus 17 e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~-----~~e~l~~~l~Gp~ai~fs~~dp~~ 91 (175)
T COG0244 17 ELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEA-----GLEGLDDLLKGPTAIAFSNEDPVA 91 (175)
T ss_pred HHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhc-----chhhHHHhccCCeEEEEecCCHHH
Confidence 46889999999999999999999999999975 899999999999999998 566699999999999999999999
Q ss_pred HHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHH
Q psy17475 80 VREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNM 157 (346)
Q Consensus 80 v~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~ 157 (346)
++++|.+|..+. |++++.++.+++|. .|++++.+..|+|.+.+|..+...|.. |.. .++..
T Consensus 92 ~~K~~~~f~k~~----~~~~~~~~~~~eg~------------~l~~~~v~~~aklp~~~el~~~l~g~~~ap~~-~~~~~ 154 (175)
T COG0244 92 AAKLLKDFAKEA----GDKAPIKGGVPEGK------------VLGAAEVIALAKLPSKEELVVMLLGVLQAPAT-KLLRA 154 (175)
T ss_pred HHHHHHHHhhhh----cccceEEEEEecCc------------ccCHHHHHHHhcCCcHHHHHHHHHHhhHhhHH-HHHHH
Confidence 999999988766 99999999999998 499999999999999999999999999 555 99999
Q ss_pred cCCCcceeeeeeeEEecCCc
Q psy17475 158 LNISPFSYGLIIKMVYDSGT 177 (346)
Q Consensus 158 L~I~p~~~~l~i~~~~~~g~ 177 (346)
|++.|.++++++.++|++|.
T Consensus 155 L~a~~~~~~~~~~a~~~~g~ 174 (175)
T COG0244 155 LKAVPDKVGLKLLAAYEKGV 174 (175)
T ss_pred HhccHHHHhhHHHHhhccCC
Confidence 99999999999999999885
No 10
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=99.84 E-value=4.7e-22 Score=192.44 Aligned_cols=76 Identities=43% Similarity=0.731 Sum_probs=74.7
Q ss_pred CcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhh
Q psy17475 270 NRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFL 345 (346)
Q Consensus 270 ~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~ 345 (346)
.|+|++|.+|+|+|.+|++|+|+||+||+|+|.||++|||+||+|||.++++||+|.+|+|++||||+|++.++|+
T Consensus 141 LgipTkI~kG~I~I~~d~~v~k~Ge~v~~~~A~LL~~L~I~p~~~~l~~~~~yd~g~~~~~~vL~i~~e~~~~~~~ 216 (310)
T PTZ00135 141 LGIATKIVKGQIEITNEVHLIKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQ 216 (310)
T ss_pred cCCceEecCCeEEEecCeEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEECCeEeCHHHcCCCHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999999986
No 11
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=99.84 E-value=9.2e-22 Score=190.57 Aligned_cols=76 Identities=29% Similarity=0.464 Sum_probs=74.7
Q ss_pred CcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhh
Q psy17475 270 NRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFL 345 (346)
Q Consensus 270 ~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~ 345 (346)
.|+|++|++|+|||.+|++|+|+||+|++|+|.||++|||+||+|||.++++||+|.+|+|++||||+|+|+++|+
T Consensus 148 LGIpTkI~kGkIeI~~d~~v~k~Ge~V~~~~A~LL~~L~IkP~~~gl~l~~vyd~g~i~~~~vL~i~~e~~~~~~~ 223 (323)
T PTZ00240 148 LNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDRGVLFTREDLSMTEDVVEKMLM 223 (323)
T ss_pred cCCCeEecCcEEEEecCeEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEeCCeecCHHHcCCCHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999999986
No 12
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=99.79 E-value=7e-20 Score=159.85 Aligned_cols=109 Identities=32% Similarity=0.458 Sum_probs=102.2
Q ss_pred ccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475 2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV 80 (346)
Q Consensus 2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev 80 (346)
++++|+.+++++++|+++++++++|+.||+. ++++|+|||||++||+++ +++.+.++++|+++++||++||.++
T Consensus 13 ~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KNtl~~~Al~~t-----~~~~~~~~l~G~~~~~f~~~~~~~~ 87 (155)
T cd00379 13 LLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGT-----GFEELKPLLKGPTALAFTNEDPVEV 87 (155)
T ss_pred HHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEehHHHHHHHcCC-----CccchhhhCcCCEEEEEeCCChHHH
Confidence 5789999999999999999999999999987 899999999999999998 4678888999999999999999999
Q ss_pred HHHHHhcccc---ccccCCCCCCCcEEEcCCCCCCCCCc
Q psy17475 81 REKLLENKVQ---APARNGAIAPCPVTIPAQNTGLGPEK 116 (346)
Q Consensus 81 ~k~l~~~k~~---~~Ar~G~iA~~dVvip~G~t~~~P~~ 116 (346)
.++|.+++.. .++|+|.++ .+|+.|.+.+.+++.+
T Consensus 88 ~k~~~~~~k~~~~~~~k~g~~~-~~v~~~~~~~~l~~lp 125 (155)
T cd00379 88 AKVLKDFAKENKKLFAKGGVVA-GKVLDPAGVTALAKLP 125 (155)
T ss_pred HHHHHHHHHhCCCceEEEEEEc-CEecCHHHHHHHhcCC
Confidence 9999999888 899999999 9999999998877665
No 13
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=99.77 E-value=3.3e-19 Score=174.39 Aligned_cols=209 Identities=18% Similarity=0.189 Sum_probs=170.6
Q ss_pred HHHHHHHHhhCCcEEEEEehH--HHHHHHhccccC---CCC----cccccCcccCCeEEEEecCCHHHHHHHHHhccccc
Q psy17475 21 QFQNIRQSLEGLGVVLMGKNT--MMRKAIRGHLEH---NPG----LERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQA 91 (346)
Q Consensus 21 qlq~iR~~LR~~~~~~vgKNt--Lmr~AL~~~~~~---~~~----l~~L~~~l~G~~gliFTn~dp~ev~k~l~~~k~~~ 91 (346)
.+.++-..|+|..-+.+.+.. -+.+.+.+.... ++| .+-..+ .|+| +.+|+.+...|.+.+.|+
T Consensus 70 ~~~~L~~~l~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~~divip--~G~t-----~~~P~~~~~~l~~lgipt 142 (330)
T PRK04019 70 DLEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVP--AGPT-----GFPPGPILSELQKLGIPA 142 (330)
T ss_pred cHHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCCCeEEEc--CCCC-----CCCCcccHHHHHHcCCCe
Confidence 378888999998777776543 344455554221 111 122222 4544 789999999999999999
Q ss_pred cccCCC--CCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHcCCCcceeee
Q psy17475 92 PARNGA--IAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGL 167 (346)
Q Consensus 92 ~Ar~G~--iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L~I~p~~~~l 167 (346)
+++.|. |+++++++++|+| ++|++.+.||+|||++...++++ ..+.+.|.. ++. |+|.|.+|+.
T Consensus 143 ~i~~G~I~i~~~~~v~~~G~~-v~~~~a~lL~~LgI~p~~~~~~i-----~a~~~~G~~~~~~~------l~i~~e~~~~ 210 (330)
T PRK04019 143 RIQKGKIVIKKDTVVAKAGEV-ISPELANVLQKLGIKPIEVGLDL-----KAAYEDGVIYTPEV------LAIDEEKYRS 210 (330)
T ss_pred EecCCEEEEecCeEEecCCCC-cCHHHHHHHHHcCCCHHHhhhHH-----HHHHhcCCccCHHH------ccCCHHHHHH
Confidence 999999 9999999999999 99999999999999999999998 445556665 333 4999999999
Q ss_pred eeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhccccccchhhHHH
Q psy17475 168 IIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKE 247 (346)
Q Consensus 168 ~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~~~~~e~ik~ 247 (346)
.+..+|.++..++.+.-.+|++.+...+.+|+++|.+||++++|||+++++++|.+|+++++||+.+++=.-..-+.++.
T Consensus 211 ~i~~A~~~a~~Ls~~~~~pt~~tl~~~i~kA~~~a~aLa~~~~~~t~e~~~~il~kA~~~~~ala~~~~~~~~~~~~~~~ 290 (330)
T PRK04019 211 DIQEAAQNAFNLAVNAAYPTPETLETLIQKAFREAKALAVEAGIVTPETADDILSKAVAQALALAAALADKDALDEELKE 290 (330)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998643234444544
Q ss_pred H
Q psy17475 248 F 248 (346)
Q Consensus 248 ~ 248 (346)
.
T Consensus 291 ~ 291 (330)
T PRK04019 291 V 291 (330)
T ss_pred h
Confidence 4
No 14
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=99.72 E-value=8.2e-18 Score=136.88 Aligned_cols=83 Identities=27% Similarity=0.381 Sum_probs=76.4
Q ss_pred ccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475 2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV 80 (346)
Q Consensus 2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev 80 (346)
++++|+.+++++++|++++|++++|++||+. ++++|+|||||++||+++..+. .|.++++|++|++||++||.++
T Consensus 16 ~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~~~~----~l~~~l~G~~~~if~~~d~~~~ 91 (100)
T PF00466_consen 16 LLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTGFEE----ALSPLLKGPTALIFSNEDPFEI 91 (100)
T ss_dssp HHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHHTSS----SSSCCTSSSEEEEEESSSHHHH
T ss_pred HHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCcccc----CccccccCCEEEEEECCCHHHH
Confidence 5789999999999999999999999999986 8999999999999999984321 5889999999999999999999
Q ss_pred HHHHHhcc
Q psy17475 81 REKLLENK 88 (346)
Q Consensus 81 ~k~l~~~k 88 (346)
.+++.+|.
T Consensus 92 ~k~l~~~~ 99 (100)
T PF00466_consen 92 AKILKKFA 99 (100)
T ss_dssp HHHHHHST
T ss_pred HHHHHHhc
Confidence 99999874
No 15
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=99.66 E-value=1.7e-16 Score=141.58 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=78.6
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNE 79 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~e 79 (346)
+++++|+.+++++++|++++|++++|+.||+. ++++|+|||||++|+++. +++.|.++++|++|++||++||.+
T Consensus 15 ~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~-----~~~~l~~~l~G~~al~fs~~d~~~ 89 (172)
T PRK00099 15 EKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGT-----GFEGLDDLLKGPTAIAFSYEDPVA 89 (172)
T ss_pred HHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcC-----CchhhhhhCcCCeEEEEeCCChHH
Confidence 36789999999999999999999999999975 799999999999999988 588999999999999999999999
Q ss_pred HHHHHHhccc
Q psy17475 80 VREKLLENKV 89 (346)
Q Consensus 80 v~k~l~~~k~ 89 (346)
+.+++.+|..
T Consensus 90 ~~k~l~~f~K 99 (172)
T PRK00099 90 AAKVLKDFAK 99 (172)
T ss_pred HHHHHHHHHh
Confidence 9999998854
No 16
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=99.66 E-value=1.9e-16 Score=139.12 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=79.1
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNE 79 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~e 79 (346)
+++++|+.+++++++|++++|++++|+.||+. ++++|+|||||++|++++ +++.+.++++|+++++||++||.+
T Consensus 14 ~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t-----~~~~l~~~l~G~~al~f~~~d~~~ 88 (157)
T cd05797 14 EKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGT-----GFEDLDDLLKGPTAIAFSEEDPVA 88 (157)
T ss_pred HHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcC-----CchhhHhhCcCCEEEEEeCCChHH
Confidence 35789999999999999999999999999976 799999999999999988 578899999999999999999999
Q ss_pred HHHHHHhcccc
Q psy17475 80 VREKLLENKVQ 90 (346)
Q Consensus 80 v~k~l~~~k~~ 90 (346)
+.+++.+|...
T Consensus 89 ~~k~l~~f~k~ 99 (157)
T cd05797 89 AAKVLKDFAKE 99 (157)
T ss_pred HHHHHHHHHHh
Confidence 99999998663
No 17
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=98.88 E-value=5.9e-10 Score=100.06 Aligned_cols=42 Identities=43% Similarity=0.604 Sum_probs=41.2
Q ss_pred CcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcc
Q psy17475 270 NRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISP 311 (346)
Q Consensus 270 ~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P 311 (346)
.|+|++|++|+|+|.+|++|+++||+|++++|.||++|||+|
T Consensus 134 lgiptki~~G~i~i~~d~~v~k~G~~v~~~~A~lL~~l~i~P 175 (175)
T cd05795 134 LGIPTKIEKGKIEIISDVVVVKKGEKVGASEATLLNKLNIKP 175 (175)
T ss_pred cCCceEEecCEEEEecCeEEecCCCCcCHHHHHHHHHcCCCC
Confidence 499999999999999999999999999999999999999998
No 18
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=97.12 E-value=0.00015 Score=64.36 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=27.1
Q ss_pred CCcchhhhccccccccccceeeccCCccC
Q psy17475 269 SNRSEERFSRNAETDLNDVHILKEGDKVG 297 (346)
Q Consensus 269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~ 297 (346)
+.|+|++|++|+|+|.+|++|+++||+|+
T Consensus 135 ~lgiptki~~G~I~i~~d~~v~k~G~~v~ 163 (163)
T cd05796 135 KLGLPTKLKKGVITLEADYVVCEEGKVLT 163 (163)
T ss_pred HcCCCeEEeCCEEEEecCcEEECCCCCCc
Confidence 45999999999999999999999999985
No 19
>KOG0816|consensus
Probab=96.84 E-value=0.00065 Score=61.87 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=55.7
Q ss_pred CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCccc
Q psy17475 269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIF 328 (346)
Q Consensus 269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~ 328 (346)
+.+.|+++.+|.|.+.+|..|+++||++.+.+|.+|..+|++--++.|.+...|+..+-+
T Consensus 155 klglPt~lk~G~vtL~sdy~VCeEG~~Ld~rqA~ILKlfg~kma~Fkl~~~~~w~~s~~~ 214 (223)
T KOG0816|consen 155 KLGLPTKLKKGVVTLLSDYTVCEEGDVLDPRQAKILKLFGKKMAKFKLAVKAYWSKSSGQ 214 (223)
T ss_pred hhcCceeecCCeEEEecCceeecCCcccCHHHHHHHHHHhHhhHhheEEEEEEEcCccce
Confidence 348999999999999999999999999999999999999999999999999999875443
No 20
>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The 60S acidic ribosomal protein plays an important role in the elongation step of protein synthesis. This family includes archaebacterial L12, eukaryotic P0, P1 and P2 []. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 6, Alt a 12, Cla h 3, Cla h 4 and Cla h 12.; GO: 0003735 structural constituent of ribosome, 0006414 translational elongation, 0005622 intracellular, 0005840 ribosome; PDB: 3A1Y_C 3N2D_B 2LBF_A 3IZS_t 3IZR_t 1S4J_A 2JDL_C 2W1O_B 1S4H_A 2ZKR_g.
Probab=96.76 E-value=0.00024 Score=56.77 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=43.0
Q ss_pred CCCccchhhHHHHHHHHHHHHHhhccccccchhhHHHHhcCchhH
Q psy17475 211 YPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSKF 255 (346)
Q Consensus 211 ypt~~s~~~~i~~a~~~~~ala~~~~~~~~~~e~ik~~l~~p~~~ 255 (346)
|||.++++|+|.+++.++.+..+.+.+.+.+...++++|.+++++
T Consensus 1 ~pT~~~i~~vl~aag~~v~~~~~~~~~~~l~~~~i~~li~~~~~~ 45 (88)
T PF00428_consen 1 EPTAENIKKVLKAAGVEVEAIWLELFAKALEGKDIKELIANGSAG 45 (88)
T ss_dssp S-SCCCHHHHHHHHTHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCchhHHHHHHHHHHHcCCcHHHHHhccccc
Confidence 899999999999999999999999999999999999999999988
No 21
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.0021 Score=57.83 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCc
Q psy17475 269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGT 326 (346)
Q Consensus 269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~ 326 (346)
..++|+.+..|+|.+.++......|+.++|+. .++..|++.|..+|+.+.++||+|.
T Consensus 118 ~l~~~~v~~~aklp~~~el~~~l~g~~~ap~~-~~~~~L~a~~~~~~~~~~a~~~~g~ 174 (175)
T COG0244 118 VLGAAEVIALAKLPSKEELVVMLLGVLQAPAT-KLLRALKAVPDKVGLKLLAAYEKGV 174 (175)
T ss_pred ccCHHHHHHHhcCCcHHHHHHHHHHhhHhhHH-HHHHHHhccHHHHhhHHHHhhccCC
Confidence 66889999999999999999999999999999 9999999999999999999999986
No 22
>KOG4241|consensus
Probab=93.69 E-value=0.14 Score=47.23 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=70.0
Q ss_pred cCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHHH
Q psy17475 3 VDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVR 81 (346)
Q Consensus 3 l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev~ 81 (346)
++++..+.++.+--+++..+=-.|..||.+ .+|+..-|++++.+++++ .++.|.+.+.||.+++|.. |+.+++
T Consensus 86 ~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~~ksygnkIlk~~~~~t-----~y~~l~plfvgnh~ill~~-d~~kik 159 (245)
T KOG4241|consen 86 REEFRVMAVCQFLPVPARDLWFARNQLRKKNIEFKSYGNKILKKIFDKT-----PYSSLNPLFVGNHAILLAK-DISKIK 159 (245)
T ss_pred HhhhhheeeeecccCcHHHHHHHHHHHHhccchhhhchHHHHHHHHhcC-----chhhhhhheeccceEEEcC-ChHHHH
Confidence 467888999999999999999999999964 789999999999999987 5888999999999999975 677888
Q ss_pred HHHHhcc
Q psy17475 82 EKLLENK 88 (346)
Q Consensus 82 k~l~~~k 88 (346)
+++...+
T Consensus 160 ~~lri~r 166 (245)
T KOG4241|consen 160 SILRITR 166 (245)
T ss_pred HHHHHHh
Confidence 8877653
No 23
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=69.26 E-value=8.9 Score=34.53 Aligned_cols=69 Identities=23% Similarity=0.254 Sum_probs=46.9
Q ss_pred ceeEeecCCc-hhH-hHHHHHcCCCcceeee--eeeEEecCC------ccccCcccccChhHHHHHHHHHHHHHHHhHHh
Q psy17475 139 DVHILKEGDS-SRE-ATLLNMLNISPFSYGL--IIKMVYDSG------TIFAPQILDIRPEDLRVKFLEGVATLASVCLS 208 (346)
Q Consensus 139 d~~v~k~Ge~-~~~-A~LL~~L~I~p~~~~l--~i~~~~~~g------~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~ 208 (346)
|+.++-.|-| +|. |.+|++||+.|.-..+ -+..-|.-. .-|+-+||.++.|.+ .+|..++++
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~il--------e~A~em~ie 73 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREIL--------EDAVEMIIE 73 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHHH--------HHHHHHHHh
Confidence 3456666777 665 7899999998864332 333344322 237788888887753 467889999
Q ss_pred hcCCCcc
Q psy17475 209 IGYPTVA 215 (346)
Q Consensus 209 ~~ypt~~ 215 (346)
=|||+.+
T Consensus 74 dg~P~~a 80 (198)
T COG2117 74 DGYPRNA 80 (198)
T ss_pred cCCCchH
Confidence 9999754
No 24
>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The 60S acidic ribosomal protein plays an important role in the elongation step of protein synthesis. This family includes archaebacterial L12, eukaryotic P0, P1 and P2 []. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 6, Alt a 12, Cla h 3, Cla h 4 and Cla h 12.; GO: 0003735 structural constituent of ribosome, 0006414 translational elongation, 0005622 intracellular, 0005840 ribosome; PDB: 3A1Y_C 3N2D_B 2LBF_A 3IZS_t 3IZR_t 1S4J_A 2JDL_C 2W1O_B 1S4H_A 2ZKR_g.
Probab=53.45 E-value=5.2 Score=31.77 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=35.2
Q ss_pred ccChhHHHHHHHHHHH--HHHHhHHhhcCCCccchhhHHHHHHHHHH
Q psy17475 185 DIRPEDLRVKFLEGVA--TLASVCLSIGYPTVASVPHSIVNGFKNVL 229 (346)
Q Consensus 185 ~i~~e~~~~~~~~a~~--~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ 229 (346)
+||.+.+...+..+.. +...+.+-+.+++..++..+|.++...+.
T Consensus 1 ~pT~~~i~~vl~aag~~v~~~~~~~~~~~l~~~~i~~li~~~~~~~~ 47 (88)
T PF00428_consen 1 EPTAENIKKVLKAAGVEVEAIWLELFAKALEGKDIKELIANGSAGMA 47 (88)
T ss_dssp S-SCCCHHHHHHHHTHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCchhHHHHHHHHHHHcCCcHHHHHhccccccc
Confidence 4788889988888888 55666666778999999999998877654
No 25
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=44.77 E-value=32 Score=29.48 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=27.9
Q ss_pred ccCCCCeEEEEEecCCCcHHHHHHHHHhhCC
Q psy17475 2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGL 32 (346)
Q Consensus 2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~ 32 (346)
.+..|+.++++|+|++...++.++|+.++..
T Consensus 26 ~l~~~sglv~lDiD~l~~ee~~~~r~~l~~~ 56 (136)
T PF08800_consen 26 NLKAYSGLVVLDIDHLDPEEAEELRQLLFED 56 (136)
T ss_pred hhhhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Confidence 4678999999999999989999999999864
No 26
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=41.76 E-value=39 Score=28.10 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=25.2
Q ss_pred CCCccchhhHHHHHH-----HHHHHHHhhccccccchhhHHHHhcCchh
Q psy17475 211 YPTVASVPHSIVNGF-----KNVLAVAAATEVDFEQAKTVKEFLKDPSK 254 (346)
Q Consensus 211 ypt~~s~~~~i~~a~-----~~~~ala~~~~~~~~~~e~ik~~l~~p~~ 254 (346)
=||.+++..++..+- .++.+++.... -..+.+.+.+.+.
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~-----gkdIeElIa~~~~ 59 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALE-----EVNIDEAIKKAAV 59 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc-----CCCHHHHHHhccc
Confidence 378888888887776 56666655542 2456666666664
No 27
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=39.39 E-value=20 Score=32.31 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.1
Q ss_pred cccccccceeeccCCccCccHHHHHhhcCC
Q psy17475 280 AETDLNDVHILKEGDKVGPSEATLLNMLNI 309 (346)
Q Consensus 280 ~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I 309 (346)
.+.|.+.-.+|++||+|++.....|..||+
T Consensus 190 ~~~V~~Ge~IV~kGe~VT~e~~~~L~~l~~ 219 (222)
T PF07697_consen 190 RGMVKKGEVIVRKGEIVTEEQYEKLESLGL 219 (222)
T ss_pred HhhccCCCEEecCCcEeCHHHHHHHHHcCC
Confidence 344566668899999999999999999986
No 28
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=31.97 E-value=64 Score=26.67 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=18.6
Q ss_pred CCCccchhhHHHHHH-----HHHHHHHhhc
Q psy17475 211 YPTVASVPHSIVNGF-----KNVLAVAAAT 235 (346)
Q Consensus 211 ypt~~s~~~~i~~a~-----~~~~ala~~~ 235 (346)
=||.+++..+|..+. .++..++...
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L 45 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAAL 45 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 488888888888887 6666666554
No 29
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=29.11 E-value=2.7e+02 Score=29.24 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=78.1
Q ss_pred CCCCCCCCCc-----hhhhhhcCCceEEe--cceEEEeeceeEeecCCc-hhHhHHHHHcCCCcceeeeeeeEEecC---
Q psy17475 107 AQNTGLGPEK-----TSFFQALSIPTKIS--KGTIEIINDVHILKEGDS-SREATLLNMLNISPFSYGLIIKMVYDS--- 175 (346)
Q Consensus 107 ~G~t~~~P~~-----~s~fq~LgIptki~--kG~I~I~~d~~v~k~Ge~-~~~A~LL~~L~I~p~~~~l~i~~~~~~--- 175 (346)
+|-||-+-.. ...|.+.|+|+=+- ||-+ .-+|++|+. +....=++.+|+..++|.--....||=
T Consensus 25 aGATGTGKTvTLqvlAE~fS~~GVPVflaDvKGDL-----sGla~~G~~~~ki~~R~~~~gl~~~~~~~~Pv~fwdl~g~ 99 (502)
T PF05872_consen 25 AGATGTGKTVTLQVLAEQFSDAGVPVFLADVKGDL-----SGLAAPGEPNEKIEERAEKLGLQDFEPRAFPVEFWDLFGE 99 (502)
T ss_pred eccCCCCceehHHHHHHHhhhcCCcEEEeecccch-----hcccCCCCCCHHHHHHHHHcCCCCCCCCCCCEEEEecCCC
Confidence 4556554432 36688999999764 4544 478999999 888888899999988888777788872
Q ss_pred -Ccc-------cc---------------------------CcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhH
Q psy17475 176 -GTI-------FA---------------------------PQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHS 220 (346)
Q Consensus 176 -g~~-------~~---------------------------~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~ 220 (346)
|.- +. ...+-+|-.+++.++.---.|+..++...|-.+++|+-.+
T Consensus 100 ~G~PvRaTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e~~~e~~~~yG~is~aS~gaI 179 (502)
T PF05872_consen 100 KGHPVRATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSENAKELSAEYGNISSASIGAI 179 (502)
T ss_pred CCceEEeeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHhhHHHHHHHcCCccHHHHHHH
Confidence 211 11 1235567778888777777788888888888888777655
Q ss_pred H
Q psy17475 221 I 221 (346)
Q Consensus 221 i 221 (346)
.
T Consensus 180 ~ 180 (502)
T PF05872_consen 180 Q 180 (502)
T ss_pred H
Confidence 3
No 30
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=27.38 E-value=2.3e+02 Score=29.07 Aligned_cols=88 Identities=16% Similarity=0.258 Sum_probs=64.0
Q ss_pred eEEEEEecCCC---cHHHHHHHHHhhCC--c-EEEE----EehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCC-
Q psy17475 8 KCFVVGADNVG---SRQFQNIRQSLEGL--G-VVLM----GKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGD- 76 (346)
Q Consensus 8 ~v~iv~~~nv~---s~qlq~iR~~LR~~--~-~~~v----gKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~d- 76 (346)
.+++||.-|.+ ..++.+++.-+... . .+++ .|+.-|+.++.+.. . -+=.|+|||+.|
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~-------~-----~~i~~~I~TKlDE 350 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS-------L-----FPIDGLIFTKLDE 350 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc-------c-----CCcceeEEEcccc
Confidence 67888988876 45667788877753 1 2332 68888888887752 1 234589999964
Q ss_pred ---HHHHHHHHHhcccc-ccccCCCCCCCcEEEcC
Q psy17475 77 ---LNEVREKLLENKVQ-APARNGAIAPCPVTIPA 107 (346)
Q Consensus 77 ---p~ev~k~l~~~k~~-~~Ar~G~iA~~dVvip~ 107 (346)
.+.+..++.+.+.| +|.-.|..-|+||+++.
T Consensus 351 T~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~ 385 (407)
T COG1419 351 TTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVAN 385 (407)
T ss_pred cCchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcC
Confidence 67777777766554 69999999999999876
No 31
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=26.91 E-value=63 Score=32.96 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=47.0
Q ss_pred CCCCcEEEcCCCCCCCCCchhhhhhcCCceE-E-ecceEE-EeeceeEeecC------Cc-----hhHhHHHHHcCCCcc
Q psy17475 98 IAPCPVTIPAQNTGLGPEKTSFFQALSIPTK-I-SKGTIE-IINDVHILKEG------DS-----SREATLLNMLNISPF 163 (346)
Q Consensus 98 iA~~dVvip~G~t~~~P~~~s~fq~LgIptk-i-~kG~I~-I~~d~~v~k~G------e~-----~~~A~LL~~L~I~p~ 163 (346)
++.-++++++| |-+.|...+.|-++||..- . .+=++- |...-.+++.| +. .-.+.+|+.+|..+.
T Consensus 142 i~~G~vil~~G-~~L~p~~i~llas~Gi~~V~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~ 220 (404)
T COG0303 142 VAKGDVILRAG-TRLTPAEIALLASLGIAEVKVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVV 220 (404)
T ss_pred ccCCCEeecCC-CCcCHHHHHHHHhCCCceEEEecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCcee
Confidence 99999999999 7799999999999998762 1 122332 22233444444 33 245888888888777
Q ss_pred eeee
Q psy17475 164 SYGL 167 (346)
Q Consensus 164 ~~~l 167 (346)
.+++
T Consensus 221 ~~gi 224 (404)
T COG0303 221 DLGI 224 (404)
T ss_pred eccc
Confidence 6654
No 32
>TIGR01896 cas_AF1879 CRISPR-associated protein, Csa1 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model describes a particularly strongly conserved family found so only in the APERN subtype of CRISPR/Cas loci and represented by AF1879 from Archaeoglobus fulgidus. This family has four perfectly preserved Cys residues. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa1, for CRISPR/Cas Subtype Protein 1.
Probab=24.50 E-value=3.5e+02 Score=26.21 Aligned_cols=102 Identities=17% Similarity=0.275 Sum_probs=67.1
Q ss_pred cEEEcCCCCCCCCCc--hhhhhhcCCceEEecceEEEeeceeEeecCCc---hhHhHHHHHc-CCCcceeeeeeeEEecC
Q psy17475 102 PVTIPAQNTGLGPEK--TSFFQALSIPTKISKGTIEIINDVHILKEGDS---SREATLLNML-NISPFSYGLIIKMVYDS 175 (346)
Q Consensus 102 dVvip~G~t~~~P~~--~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~---~~~A~LL~~L-~I~p~~~~l~i~~~~~~ 175 (346)
+..|+..+.|+++-. -.++-.+++|.....|+- +..++ .-+|-+|+-. |+.. .+|...-.....
T Consensus 149 E~~vDGs~lGLs~~l~~Da~~~~~~~pVEyK~G~~---------~~~hklQLaaYALllEe~yg~pV-d~G~I~y~~~~~ 218 (271)
T TIGR01896 149 EYNVDGSPLGLSDRLRVDALVGILPVVVEMKVGSY---------QERHELALAGYALAIEADLEVPV-DYGLLVYVNVND 218 (271)
T ss_pred EeccCCccccCccccccchhhcccceeEEEecCCC---------CchhHHHHHHHHHHHHHHHCCCC-cceeEEEEeecc
Confidence 345666677776533 234456888888888871 12345 6678888765 6544 445544433333
Q ss_pred CccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCc
Q psy17475 176 GTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTV 214 (346)
Q Consensus 176 g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~ 214 (346)
..........||++ ++..|.++...+..+..+-.+|-+
T Consensus 219 r~~~~~~~V~I~d~-LR~~v~e~~dei~~iI~~g~~P~p 256 (271)
T TIGR01896 219 GVEIKARLVYISDD-LRTEFLERRDEAIRIIEYGSDPGL 256 (271)
T ss_pred ccccceEEEECCHH-HHHHHHHHHHHHHHHHhCCCCCCC
Confidence 33344556778777 788999999999999888888876
No 33
>PRK14547 rplD 50S ribosomal protein L4; Provisional
Probab=23.95 E-value=90 Score=30.62 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=44.5
Q ss_pred ccccccccCCCC-CCCcEEEcCCCCCCCCCchhhhhhcC-------C----ceEEecceEEEeeceeEeecCCchhHhHH
Q psy17475 87 NKVQAPARNGAI-APCPVTIPAQNTGLGPEKTSFFQALS-------I----PTKISKGTIEIINDVHILKEGDSSREATL 154 (346)
Q Consensus 87 ~k~~~~Ar~G~i-A~~dVvip~G~t~~~P~~~s~fq~Lg-------I----ptki~kG~I~I~~d~~v~k~Ge~~~~A~L 154 (346)
.|---.||.|.+ +|. ...|-+-++|.+.++.++|+ + ..++..|.+.|..|+..+..........+
T Consensus 67 QKGTGrAR~Gs~rsP~---wrGGGvafGPkpR~y~~klNKK~rrlAlrsALS~k~~~~~liVVd~~~~~~~~KTK~~~~~ 143 (298)
T PRK14547 67 QKGTGRARQGSIRAPQ---WRGGGTVHGPRPREYNQRTPKKMRQAALRGALSDRARDNRLIVVESLQDGDPPSTKAVAQA 143 (298)
T ss_pred CCCCcccCcCCccCCc---eeCCeeecCCCCchhhhhcCHHHHHHHHHHHHHHHHhcCCEEEEeCccccCCcCHHHHHHH
Confidence 334457899987 543 23455558887766654443 2 23667899999999753333322777888
Q ss_pred HHHcC
Q psy17475 155 LNMLN 159 (346)
Q Consensus 155 L~~L~ 159 (346)
|+.|+
T Consensus 144 L~~l~ 148 (298)
T PRK14547 144 LSVME 148 (298)
T ss_pred HHhcc
Confidence 88886
No 34
>PLN00208 translation initiation factor (eIF); Provisional
Probab=22.54 E-value=1.1e+02 Score=26.91 Aligned_cols=48 Identities=25% Similarity=0.271 Sum_probs=33.0
Q ss_pred cCCceEEecceEEEe-eceeEe-------ecCCc-----hhHhHHHHHcCCCcceeeeeeeE
Q psy17475 123 LSIPTKISKGTIEII-NDVHIL-------KEGDS-----SREATLLNMLNISPFSYGLIIKM 171 (346)
Q Consensus 123 LgIptki~kG~I~I~-~d~~v~-------k~Ge~-----~~~A~LL~~L~I~p~~~~l~i~~ 171 (346)
.-||.|+.+ .|||. .|++++ .+|+. +.|+.-|+..|.=|..|.+.=..
T Consensus 59 a~IpGKmRK-rIWI~~GD~VlVel~~~d~~KgdIv~ry~~dqvr~Lkk~G~~P~~f~~~~~~ 119 (145)
T PLN00208 59 CHIRGKMRK-KVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 119 (145)
T ss_pred EEEecccee-eEEecCCCEEEEEccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeecccc
Confidence 345666665 56664 355555 34444 89999999999999999874333
No 35
>PF06023 DUF911: Archaeal protein of unknown function (DUF911); InterPro: IPR009260 This family consists of several archaeal strongly conserved proteins whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats). The function of these proteins has not been experimentally determined, but computational analysis has suggested that they may function as nucleases in DNA repair, similar to RecB (IPR004586 from INTERPRO) [].
Probab=22.54 E-value=49 Score=32.28 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=32.8
Q ss_pred CcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhhC
Q psy17475 309 ISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE 346 (346)
Q Consensus 309 I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~~ 346 (346)
=-|+.||+.+.--+.+|..++-+..-|+++ +++.|.|
T Consensus 221 e~PVD~G~lvyv~~~~~~~~~~~~~~I~d~-lR~~FlE 257 (289)
T PF06023_consen 221 EVPVDYGCLVYVSFNGGVRIRWDPVYISDD-LRREFLE 257 (289)
T ss_pred cCCeeeeeEEEEEeCCCceEEEEEEEcChH-HHHHHHH
Confidence 369999999999999999999999999877 8998875
No 36
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=20.85 E-value=1.1e+02 Score=27.22 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=34.7
Q ss_pred CCceEEecceEEEe-eceeEe-------ecCCc-----hhHhHHHHHcCCCcceeeeeeeEEec
Q psy17475 124 SIPTKISKGTIEII-NDVHIL-------KEGDS-----SREATLLNMLNISPFSYGLIIKMVYD 174 (346)
Q Consensus 124 gIptki~kG~I~I~-~d~~v~-------k~Ge~-----~~~A~LL~~L~I~p~~~~l~i~~~~~ 174 (346)
-||.|+.+ .|||. .|++++ .+|+. +.|+.-|+..|.=|..|++.=...+.
T Consensus 60 ~I~GKmRK-~IWI~~GD~VlVel~~yd~~KgdIi~Ry~~devr~Lk~~g~~P~~~~~~~~~~~~ 122 (155)
T PTZ00329 60 HIRGKMRK-RVWINIGDIILVSLRDFQDSKADVILKYTPDEARALKQHGELPETAKINETDIFD 122 (155)
T ss_pred Eeecccee-eEEecCCCEEEEeccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeeccccccC
Confidence 35556655 46654 344444 33444 89999999999999999987766664
Done!